Citrus Sinensis ID: 037288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
Protein Sequence
MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSSLTGATTSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNWS
Secondary Structure (PSIPRED)
ccccccccccccccccEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEEcccccccccEEEEcccccEEEEEEEcccEEEEcccEEEEEcEEEccccccccccccccccEEEccccEEEccccccEEEEEcccccEEEEcccccccEEEEEEEcccccEEEEEEcccccccccccccccccEEEEEccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccccccEEcccccEEccEEEEEEcccEEEEEEEEEEEEEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEcccccccccccccccEEEcccccccccccEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccEEEEccEEEcccccccEEEEEcccccccccccEEEEcccccEEEEEEccccccEEccEEEEcccccccccccccccccccccEEEEccccEEEccccEEEEEEccccccEcccccccccEEEEEcccccccccEEEEcccccccccccccccccccEEEccccccEEEEEEEcccccEEEEEcccEEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEEcccccEccccccEEEEEEccccccccccccccHEEEcccccEEEEEccccEEEEEEEcccccEEEEEcccccEEEEEEEEcccccEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccEEEccccccccccccccEEccccccccccccEEEEEccccEEEEcc
Coil and Loop (DISEMBL)
mpqelpgfyydaeknryfpikgpipgtsrssstaaqkpiskqptratnssltgatTSKLLQARELRGnvfslskgkcnfKEEFQKRLisqpvvwryeatnqtgdiTLEQIElnvqtpegqfrtdVLLTGSVNGFFSLfevgnvgqhahdtvkfipscvwprikdnktesskapehIWRLNKASILMPSSVSCIKlfgkhpscatdggsVRHALITSlgsettggsiyalnldnpldigpnfsiiRRSTMHLVASFKCTvwtadfctnpsqavigtNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRkrqrgcssragrrhripysrlqrndrvtNEQWFELKaniwpshttfmpssisclqslQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERfvmsggedcklrIWSIrsgelvfedkfsnsvpsavcwrtqrsmgpqiegkiheefdlgqrhsweAWIGTQEGLFRMNWS
Flexible Loop (DISEMBL)
MPQELPGFYYDAEKNRYFPIKGPIPGTSRSsstaaqkpiskqptratnssltgaTTSKLLQARELRGNVFSlskgkcnfkeefqkrlisqpvvWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKdnktesskapehIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFrngaivtvdvrkrqrgcssragrrhripysrlqrndrvtnEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVqsyeghvnshtriqlgvdqsERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNWS
Low Complexity Region (SEG)
MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSSLTGATTSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNWS
Disordered region (IsUnstruct)
*******FYYDAEKNRYFP********************************************ELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIK**********EHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ************IPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFR****
Disordered Region (DISOPRED)
*PQELPGFYYDAEKNRYFPI*******************************************ELRGN*FSLSKGKCNFKEEFQKRLISQP*******T*QTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKT*SSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ************EEFDLGQRHSWEAWIGTQEGLFRMNWS
Disordered Region (DISEMBL)
MPQELPGFYYDAEKNRYFPIKGPIP**************************TGATTSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK***********RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNWS
Disordered Region (DISPRO)
*PQELPGFYYDAEKNRYFPIKGPIP****************QP*********GATTSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNWS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSSLTGATTSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	513	2.2.26 [Sep-21-2011]
Q58DC2	494	DDB1- and CUL4-associated	yes	no	0.721	0.748	0.226	1e-13
Q3SXM0	396	DDB1- and CUL4-associated	yes	no	0.247	0.320	0.320	2e-13
Q8WV16	495	DDB1- and CUL4-associated	no	no	0.247	0.256	0.290	7e-12
Q8NA75	395	DDB1- and CUL4-associated	no	no	0.247	0.321	0.320	2e-11
Q17963	376	WD repeat-containing prot	yes	no	0.130	0.178	0.357	7e-05
Q8H0T9	837	Katanin p80 WD40 repeat-c	no	no	0.138	0.084	0.306	0.0002
Q09392	545	Uncharacterized WD repeat	no	no	0.348	0.328	0.226	0.0004
A8X8C6	368	WD repeat-containing prot	N/A	no	0.130	0.182	0.314	0.0005

>sp|Q58DC2|DCAF4_BOVIN DDB1- and CUL4-associated factor 4 OS=Bos taurus GN=DCAF4 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 185/469 (39%), Gaps = 99/469 (21%)

Query: 4   ELPGFYYDAEKNRYFPIKGPIPGTSR----SSSTAAQKPISKQPTRATNS--------SL 51
           +LPG+Y+D EK RYF +   +PG +     +  +  QK + ++  R            + 
Sbjct: 63  DLPGYYFDPEKKRYFRL---LPGHNNCNPLTKESIRQKEMERKRLRLLEEEEQQGKKIAR 119

Query: 52  TGATTSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIE 111
            G   S LLQ  +L    F  +   C    E Q   + +  V + ++++ +   + +   
Sbjct: 120 LGFNASSLLQKSKLG---FLNATSYCRLAHELQVSCMQRKKV-QIQSSDPSALASDQFNL 175

Query: 112 LNVQTPEGQFRT--DVLLTGSVNGFFSL--FEVGNVGQHAHDTVKFIPSCVWPRIKDNKT 167
           +   T   +  T  DV + GS  G  SL   +      H H+ + F           N+ 
Sbjct: 176 IMADTNSDRLFTVNDVKVGGSKYGIISLHGLKTPTFRVHMHENLYFT----------NRK 225

Query: 168 ESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIY 227
            ++     +  L+   +L      C+    + P CAT        L TSL          
Sbjct: 226 VNAMCWASLNHLDSHVLL------CLMGIAETPGCAT-------LLPTSLFVSNHAAG-- 270

Query: 228 ALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETG 287
               D P  +          +  +  ++ C  W+ +   N   +  G +    +  + TG
Sbjct: 271 ----DRPGML---------CSFRIPGAWSC-AWSLNIQANNCFST-GLSRRVLVTSVVTG 315

Query: 288 MASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL 347
                  S SD+L QQ   +  ++  G R+G I  +D+R + +G                
Sbjct: 316 HRQSFGTS-SDVLTQQFAVTAPLLFNGCRSGEIFAIDLRCQNQG---------------- 358

Query: 348 QRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407
                             W +   F  S+++ +Q LQ  +Q  +AS M GT+KL+D R T
Sbjct: 359 ----------------KGWKATCLFHDSAVTSVQILQ-EEQCLMASDMAGTIKLWDLRTT 401

Query: 408 TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
               ++ YEGHVN +  + L V + E  +++ G+DC  RIWS+  G+L+
Sbjct: 402 K--CIRQYEGHVNEYAHLPLHVHEEEGIMVAVGQDCYTRIWSLHDGQLL 448

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Bos taurus (taxid: 9913)

>sp|Q3SXM0|DC4L1_HUMAN DDB1- and CUL4-associated factor 4-like protein 1 OS=Homo sapiens GN=DCAF4L1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 35/162 (21%)

Query: 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT 354
           + SD+LAQQ   +  ++  G R+G I  +D+R R RG   RA R                
Sbjct: 223 TSSDVLAQQFASTAPLLFNGCRSGEIFAIDLRCRNRGKGWRATR---------------- 266

Query: 355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS 414
                            F  S+++ +Q LQ  +Q  +AS M G +KL+D R T    V+ 
Sbjct: 267 ----------------LFHDSAVTSVQILQ-EEQCLMASDMTGKIKLWDLRATK--CVRQ 307

Query: 415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
           YEGHVN    + L V + E  V++ G+DC  RIWS+    L+
Sbjct: 308 YEGHVNESAYLPLHVHEEEGIVVAVGQDCYTRIWSLHDAHLL 349

Homo sapiens (taxid: 9606)

>sp|Q8WV16|DCAF4_HUMAN DDB1- and CUL4-associated factor 4 OS=Homo sapiens GN=DCAF4 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 35/162 (21%)

Query: 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT 354
           + SD+LAQQ      ++  G R+G I  +D+R   +G                       
Sbjct: 323 TNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG----------------------- 359

Query: 355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS 414
                      W +   F  S+++ ++ LQ  +QY +AS M G +KL+D R T    V+ 
Sbjct: 360 ---------KGWKATRLFHDSAVTSVRILQ-DEQYLMASDMAGKIKLWDLRTTK--CVRQ 407

Query: 415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
           YEGHVN +  + L V + E  +++ G+DC  RIWS+    L+
Sbjct: 408 YEGHVNEYAYLPLHVHEEEGILVAVGQDCYTRIWSLHDARLL 449

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q8NA75|DC4L2_HUMAN DDB1- and CUL4-associated factor 4-like protein 2 OS=Homo sapiens GN=DCAF4L2 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 35/162 (21%)

Query: 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT 354
           + SD+LAQQ      ++  G R+G I  +D+R   +G   +A                  
Sbjct: 223 TSSDVLAQQFAIMTPLLFNGCRSGEIFGIDLRCGNQGSGWKA------------------ 264

Query: 355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS 414
                     I  SH     S+++ LQ LQ   Q+ ++S M GT+KL+D R T    V  
Sbjct: 265 ----------ICLSHD----SAVTSLQILQ-DGQFLVSSDMTGTIKLWDLRATK--CVTQ 307

Query: 415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
           YEGHVN+   + + V++ E  V + G+DC  RIWS+R G L+
Sbjct: 308 YEGHVNNSAYLPVHVNEEEGVVAAVGQDCYTRIWSLRHGHLL 349

Homo sapiens (taxid: 9606)

>sp|Q17963|TG125_CAEEL WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=4 SV=1

 Score = 49.3 bits (116), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLR 446
           +Y LAS++D T+KL+D   +    ++ Y GH NS   I      +  ++++SG EDCK+ 
Sbjct: 269 KYILASNLDSTLKLWD--FSKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKIY 326

Query: 447 IWSIRSGELV 456
           IW++++ E+V
Sbjct: 327 IWNLQTREIV 336

Caenorhabditis elegans (taxid: 6239)

>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKL 445
           + ++F + S+D  +K++D R   +G + +Y+GH      ++   D   R+V+SGGED  +
Sbjct: 112 FGEFFASGSLDTNLKIWDIR--KKGCIHTYKGHTRGVNVLRFTPDG--RWVVSGGEDNIV 167

Query: 446 RIWSIRSGELVFEDK 460
           ++W + +G+L+ E K
Sbjct: 168 KVWDLTAGKLLTEFK 182

May participate in a complex which severs microtubules in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Arabidopsis thaliana (taxid: 3702)

>sp|Q09392|YR49_CAEEL Uncharacterized WD repeat-containing protein F47D12.9 OS=Caenorhabditis elegans GN=F47D12.9 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 46/225 (20%)

Query: 256 KCTVWTADFCTNPSQAVIGTNLGAA--MVDMETGMASWVCRSKSDILAQQVIHSGNVVLC 313
           K  +W+  +  N  Q  IG  L +   + ++ T  +  +   K ++L       GN+V  
Sbjct: 334 KGNIWSVGW--NAPQMSIGFGLESCFRVENLLTDRSFLMSSRKRNVLNHCFSADGNLVYM 391

Query: 314 GFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM 373
           G RN  ++  D+R  +                     D +T +    L       +TTF 
Sbjct: 392 GLRNDNVIKSDLRMNR---------------------DHITGQ----LNG---ACNTTF- 422

Query: 374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE 433
              +  L+  +   +  +    D  ++++D R   +  +    GH N+  R+ +  D+ E
Sbjct: 423 ---VRVLEKTR--PECVVTEGFDSIIRIWDFRWP-KNPMMEMHGHSNNCNRLNVFFDKEE 476

Query: 434 RFVMSGGEDCKLRIWSIRSGELVFEDKFSNS----VPSAV---CW 471
           RFV + G D  +R WS+ SG+++   K  N      P AV   CW
Sbjct: 477 RFVFAAGSDGYVRGWSLTSGDMLCSVKTPNHSNPIFPRAVYSDCW 521

Caenorhabditis elegans (taxid: 6239)

>sp|A8X8C6|TG125_CAEBR WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1

 Score = 46.6 bits (109), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLR 446
           +Y L+S++D T+KL+D        ++ Y+GH N+   I      +  ++++SG EDCK+ 
Sbjct: 261 KYILSSNLDNTLKLWD--FGKGKTLKQYQGHENNKYCIFANFSVTGGKWIISGSEDCKIY 318

Query: 447 IWSIRSGELV 456
           +W++++ E+V
Sbjct: 319 VWNLQTKEVV 328

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
359473627	509	PREDICTED: uncharacterized protein LOC10	0.972	0.980	0.591	1e-168
449490692	515	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.978	0.974	0.528	1e-146
449433459	515	PREDICTED: uncharacterized protein LOC10	0.978	0.974	0.527	1e-145
356532597	510	PREDICTED: uncharacterized protein LOC10	0.957	0.962	0.506	1e-135
224057910	471	predicted protein [Populus trichocarpa]	0.830	0.904	0.533	1e-131
356558223	683	PREDICTED: uncharacterized protein LOC10	0.896	0.673	0.497	1e-130
334187728	529	transducin/WD40 domain-containing protei	0.953	0.924	0.450	1e-117
297811881	473	WD-40 repeat family protein [Arabidopsis	0.892	0.968	0.432	1e-108
9755760	467	hypothetical protein [Arabidopsis thalia	0.867	0.952	0.421	1e-106
357111760	508	PREDICTED: uncharacterized protein LOC10	0.964	0.974	0.402	1e-100

>gi|359473627|ref|XP_002265303.2| PREDICTED: uncharacterized protein LOC100266712 [Vitis vinifera] gi|297738186|emb|CBI27387.3| unnamed protein product [Vitis vinifera]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 307/519 (59%), Positives = 369/519 (71%), Gaps = 20/519 (3%)

Query: 2   PQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSSLTGATTSKLLQ 61
           P+ELPGFYYD EKNRYFPIK PIPG+S SSST   KP S   +        G   +KLLQ
Sbjct: 3   PRELPGFYYDVEKNRYFPIKAPIPGSS-SSSTRLNKPPSLPKSGNNICKRIGIRAAKLLQ 61

Query: 62  ARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQF 121
           +REL G+V    KGKCNF++E+ K L SQP+VW+Y+ T++ GD  LEQI  ++ T +GQ 
Sbjct: 62  SRELHGDVIPSKKGKCNFEKEYLKVLASQPLVWKYQETDRIGDGALEQISTDINTSDGQS 121

Query: 122 RTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNK 181
             D+LLTG VNG+ SL+EV  VGQH    VK +P  VWP +   +TE SKA  HIWR   
Sbjct: 122 PKDLLLTGGVNGYLSLYEVAKVGQHFDYGVKCMPDRVWPPVIGKQTECSKAVGHIWRPTG 181

Query: 182 ASILMPSSVSCIKLFGKHPSCATDGGS-VRHALITSLGSETTGGSIYALNLDNPLDIGPN 240
           AS++M SS+SCIK+ GKH  C  D  S ++H LIT+LGSET GGS+Y LNL  PLD   N
Sbjct: 182 ASLVMQSSISCIKMVGKHSPCTIDDQSAIQHVLITTLGSETIGGSVYILNLTRPLDF--N 239

Query: 241 FSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDIL 300
              I R  MH VASF CT+WTAD  +  SQAVIGTN+G A+V+MET + SWVCR+KSD+L
Sbjct: 240 SIPIIRQRMHEVASFNCTIWTADCNSKGSQAVIGTNVGVALVNMETRVPSWVCRTKSDVL 299

Query: 301 AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ------RNDRVT 354
           + Q+  SGNVVLCG RNGA+VTVDVR++Q G  +R   RHR+PY   +      R  +  
Sbjct: 300 SLQLDQSGNVVLCGLRNGAVVTVDVREKQEGAYARH-TRHRVPYPSHRISEASSRTVQKF 358

Query: 355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS 414
           ++QWFELK  I+P  T F+PSSISCL SLQLYDQYFLASSMDG++KLYDHRL  RGAVQS
Sbjct: 359 SKQWFELKGKIYPESTIFLPSSISCLLSLQLYDQYFLASSMDGSMKLYDHRLIQRGAVQS 418

Query: 415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCW-RT 473
           YEGHVNSHTRIQLGVD SERFV SGGED   RIWSI SGEL+FEDKFSNSVP  +CW +T
Sbjct: 419 YEGHVNSHTRIQLGVDPSERFVFSGGEDHNFRIWSITSGELLFEDKFSNSVPLTLCWEQT 478

Query: 474 QRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNW 512
           QR +        H+    GQ H W AWIG++EG+FRM W
Sbjct: 479 QRVL-----DGTHQH---GQMHGWSAWIGSEEGVFRMQW 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490692|ref|XP_004158679.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230256 [Cucumis sativus]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/518 (52%), Positives = 360/518 (69%), Gaps = 16/518 (3%)

Query: 2   PQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRAT---NSSLTGAT-TS 57
           P +LPG+YYDA+KNRYFP+KGPIPG+SR+SS+++  P  K P+ +T   NS L     T 
Sbjct: 4   PPDLPGYYYDAQKNRYFPLKGPIPGSSRASSSSSSAPHHKPPSDSTPTVNSYLKADLRTV 63

Query: 58  KLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTP 117
           KL+QAREL G+V + SK KCNFKE+FQ  L S+PV W+Y  T+  GD  L+++ +NV T 
Sbjct: 64  KLIQARELYGDVIASSKAKCNFKEKFQNLLASKPVFWKYRGTDTMGDSALQEMPINVDTL 123

Query: 118 EGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIW 177
           EGQ  + VLLTG+++G  S F VG   QH    V   P  VWP  ++N+    + P  IW
Sbjct: 124 EGQRESSVLLTGNISGSLSFFGVGGGDQHIGHPVNCCPELVWPSARENQM-FGEVPGDIW 182

Query: 178 RLNKASILMPSSVSCIKLFGKH-PSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLD 236
           +L+ AS+ M S++SCIKLF K  PS   +   ++HALI++LGS+ +GGS+Y LNL  PLD
Sbjct: 183 QLSGASLQMSSNISCIKLFKKRFPSVHDEVSDIQHALISTLGSDVSGGSVYILNLVEPLD 242

Query: 237 IGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK 296
                 +IRR  +H VASF C++WTAD  ++  +AVIGTN+GAA VDM TG  SW+   K
Sbjct: 243 FNRTIPVIRRR-IHEVASFDCSIWTADCQSSGGRAVIGTNIGAASVDMGTGRISWILHGK 301

Query: 297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL-QRNDRVTN 355
           SDI A Q+IHS NVVLCG RNG IVT+D R+RQ     +   RHRIPY  + +RN R ++
Sbjct: 302 SDIFALQLIHSENVVLCGLRNGMIVTIDTRERQE--VGKRLLRHRIPYLPIDRRNSRTSS 359

Query: 356 EQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY 415
           +QW++L  NI PS T  MPSSIS L SLQ  D+YFLASSMDG+VKLYDHRL  RGAVQ+Y
Sbjct: 360 QQWYKLTGNIXPSCTVKMPSSISSLMSLQFDDRYFLASSMDGSVKLYDHRLIQRGAVQTY 419

Query: 416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR 475
           +GH NSHTR+QLGVD +E FV SGGEDCK R+W+I+SG+L+FEDKF ++VPS +CWR   
Sbjct: 420 DGHENSHTRVQLGVDPTETFVTSGGEDCKFRLWNIKSGKLIFEDKFGDAVPSTICWRRAG 479

Query: 476 SMGPQ-IEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNW 512
              P+ ++G +  E      HS  AW+G+Q G+  ++W
Sbjct: 480 GRFPRGLDGYLGCE-----DHSSGAWLGSQAGIHYVSW 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433459|ref|XP_004134515.1| PREDICTED: uncharacterized protein LOC101220880 [Cucumis sativus]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/518 (52%), Positives = 360/518 (69%), Gaps = 16/518 (3%)

Query: 2   PQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRAT---NSSLTGAT-TS 57
           P +LPG+YYDA+KNRYFP+KGPIPG+SR+SS+++  P  K P+ +T   NS L     T 
Sbjct: 4   PPDLPGYYYDAQKNRYFPLKGPIPGSSRASSSSSSAPHHKPPSDSTPTVNSYLKADLRTV 63

Query: 58  KLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTP 117
           KL+QAREL G+V + SK KCNFKE+FQ  L S+PV W+Y  T+  GD  L+++ +NV T 
Sbjct: 64  KLIQARELYGDVIASSKAKCNFKEKFQNLLASKPVFWKYRGTDTMGDSALQEMPINVDTL 123

Query: 118 EGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIW 177
           EGQ  + VLLTG+++G  S F VG   QH    V   P  VWP  ++N+    + P  IW
Sbjct: 124 EGQRESSVLLTGNISGSLSFFGVGGGDQHIGHPVNCCPELVWPSARENQM-FGEVPGDIW 182

Query: 178 RLNKASILMPSSVSCIKLFGKH-PSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLD 236
           +L+ AS+ M S++SCIKLF K  PS   +   ++HALI++LGS+ +GGS+Y LNL  PLD
Sbjct: 183 QLSGASLQMSSNISCIKLFKKRFPSVHDEVSDIQHALISTLGSDVSGGSVYILNLVEPLD 242

Query: 237 IGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK 296
                 +IRR  +H VASF C++WTAD  ++  +AVIGTN+GAA VDM TG  SW+   K
Sbjct: 243 FNRTIPVIRRR-IHEVASFDCSIWTADCQSSGGRAVIGTNIGAASVDMGTGRISWILHGK 301

Query: 297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL-QRNDRVTN 355
           SDI A Q+IHS NVVLCG RNG IVT+D R+RQ     +   RHRIPY  + +RN R ++
Sbjct: 302 SDIFALQLIHSENVVLCGLRNGMIVTIDTRERQE--VGKRLLRHRIPYLPIDRRNSRTSS 359

Query: 356 EQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY 415
           +QW++L  NI+PS T  MPSSIS L SLQ  D+YFLASSMDG+VKLYDHRL  RGAVQ+Y
Sbjct: 360 QQWYKLTGNIFPSCTVKMPSSISSLMSLQFDDRYFLASSMDGSVKLYDHRLIQRGAVQTY 419

Query: 416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR 475
           +GH NSH R+QLGVD +E FV SGGEDCK R+W+I+SG+L+FEDKF ++VPS +CWR   
Sbjct: 420 DGHENSHPRVQLGVDPTETFVTSGGEDCKFRLWNIKSGKLIFEDKFGDAVPSTICWRRAG 479

Query: 476 SMGPQ-IEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNW 512
              P+ ++G +  E      HS  AW+G+Q G+  ++W
Sbjct: 480 GRFPRGLDGYLGCE-----DHSSGAWLGSQAGIHYVSW 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532597|ref|XP_003534858.1| PREDICTED: uncharacterized protein LOC100797740, partial [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/519 (50%), Positives = 344/519 (66%), Gaps = 28/519 (5%)

Query: 4   ELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSSLTGA--------T 55
           ELPGFYYD+EK+RYFPIKGPIPG    SS+    P    P  ++N    G+        T
Sbjct: 9   ELPGFYYDSEKSRYFPIKGPIPG----SSSKPMTPALNSPQTSSNQESGGSCCRKLRNRT 64

Query: 56  TSKLLQARELRGNVFSLSK-GKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNV 114
            SKLL+AREL G+    S+  + NF EEF+K   S+PV+W+Y  T+      LE + ++V
Sbjct: 65  PSKLLRARELDGHCAIASRYCRSNFTEEFRKMQASRPVIWKYRGTDGMRITALEHLRVDV 124

Query: 115 QTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPE 174
           QT  G+  TDVLLTGS NG  S  +VG VG++     K+   CV   +K    E+++  +
Sbjct: 125 QTSAGKTETDVLLTGSTNGSMSFSQVGGVGRNHDGGTKWRADCVKNYVKGRTDENNEVLK 184

Query: 175 HIWRLNKASILMPSSVSCIKLFGKHPSCAT-DGGSVRHALITSLGSETTGGSIYALNLDN 233
            +++ N+A++LM S +S I+L  K  S A  DG  V  AL T+LGSET+GG++Y L+L  
Sbjct: 185 PVFKPNRAALLMSSRISSIRLGPKFSSHAVNDGHIVGRALFTTLGSETSGGTVYTLDLVE 244

Query: 234 PLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVC 293
           PL++GP   +   S +  +ASF+ T+WT+++  N  +AVIGTNLGAA VD+ETG  SW  
Sbjct: 245 PLNLGPGI-LNTWSGLEEIASFRGTIWTSEYDYNRHRAVIGTNLGAASVDLETGTMSWFL 303

Query: 294 RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRV 353
             KSD+ AQQ+++SGNV+LCG RNGAIVTVD R+R+   S R    HRIPY+   +    
Sbjct: 304 HCKSDVFAQQIVNSGNVILCGLRNGAIVTVDSRERRESLSGRL-ITHRIPYASSDKKVVG 362

Query: 354 TNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ 413
           +N++WF+LK +I+PSHT  M SSISCL SLQ  DQYFLASSMDG++KLYD RL  RGAVQ
Sbjct: 363 SNKEWFKLKGDIYPSHTIRMSSSISCLASLQFDDQYFLASSMDGSMKLYDLRLLQRGAVQ 422

Query: 414 SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT 473
            YEGHVNSHTRIQ+GVD SERFVMSGG DCKLR+WSI+SGEL+FEDKFS+S+ S VC++ 
Sbjct: 423 CYEGHVNSHTRIQMGVDPSERFVMSGGNDCKLRLWSIKSGELLFEDKFSDSIISTVCFKA 482

Query: 474 QRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNW 512
           +            EE       S  AW+G+ EGLF M W
Sbjct: 483 E------------EENQYKCDSSQGAWLGSYEGLFYMCW 509

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057910|ref|XP_002299385.1| predicted protein [Populus trichocarpa] gi|222846643|gb|EEE84190.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/480 (53%), Positives = 313/480 (65%), Gaps = 54/480 (11%)

Query: 4   ELPGFYYDAEKNRYFPIKGPIPGTSRSSS--TAAQKPISKQPTRATNSSLTGATTSKLLQ 61
           ELPGFYYD EKNRYFP+KGPIPG+SRSSS    A+KP +     +     TG   S+LLQ
Sbjct: 5   ELPGFYYDKEKNRYFPLKGPIPGSSRSSSSSNKAKKPSTNNTQESNFCRRTGVRISQLLQ 64

Query: 62  ARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQF 121
            REL GNV + SKGKC+F EEF K   S+PVVW+Y +T +  D  ++QI +++ T EGQ 
Sbjct: 65  GRELNGNVITSSKGKCDFVEEFLKIQASKPVVWKYRSTEKIADSAMDQIHIDIHTAEGQT 124

Query: 122 RTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNK 181
             +VL+TG VNG  SLFEVG VG+H H  V+ IP  +WP I++ + E  K P  IWR   
Sbjct: 125 EANVLITGGVNGSLSLFEVGKVGEHNHG-VECIPDRMWPVIEEKRAECGKDPGCIWRPPG 183

Query: 182 ASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNF 241
           AS+ M S++SCIK+ GKH                                     I   F
Sbjct: 184 ASLHMSSNISCIKMCGKHSP-----------------------------------IQRAF 208

Query: 242 SIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILA 301
           S I    MH  A F CT+WTAD   N ++A I TN+GAA+V++ETGM SWVCRSKSD+L+
Sbjct: 209 SAIGE-MMHKTADFNCTIWTADCSYNSNRACIRTNVGAALVNLETGMTSWVCRSKSDVLS 267

Query: 302 QQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFEL 361
           QQ+  SGNVVLCG RNGAI+TVDVR++Q   S R   RHRIPYS L R            
Sbjct: 268 QQLDPSGNVVLCGLRNGAILTVDVREKQERVSDRF-IRHRIPYSSLGR------------ 314

Query: 362 KANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS 421
           + NI+PS T  MPSS+  L SLQ YDQYFLASSMDG   LYD R+T RGAVQSYEGHVNS
Sbjct: 315 QGNIYPSRTILMPSSVCSLVSLQSYDQYFLASSMDGL--LYDQRMTKRGAVQSYEGHVNS 372

Query: 422 HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI 481
           HTR+QLGVDQSERFVM+GGEDC LR+WSI+SG+L+FE+K S+S+ S VCW+   S  P +
Sbjct: 373 HTRLQLGVDQSERFVMAGGEDCSLRLWSIKSGKLLFEEKISDSILSTVCWKRSESKPPAL 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558223|ref|XP_003547407.1| PREDICTED: uncharacterized protein LOC100798753 [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/521 (49%), Positives = 327/521 (62%), Gaps = 61/521 (11%)

Query: 2   PQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSSLTGA------- 54
           P+ELPGFYYD EKNRYFPIKGPIPG    SS+  + P    P  ++N    G+       
Sbjct: 213 PKELPGFYYDPEKNRYFPIKGPIPG----SSSKPKTPALNSPQTSSNQESGGSCCRKLRN 268

Query: 55  -TTSKLLQARELRGNVFSLSK-GKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIEL 112
            T SKLLQAREL G+   +S+  + NF EEF+K   S+PVVW+Y  T+      LE + +
Sbjct: 269 RTLSKLLQARELDGHSVVISRYCRSNFTEEFRKMQASRPVVWKYRGTDGMRITALEHLRV 328

Query: 113 NVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKA 172
           +VQT EGQ  TDVLLTGS NG  S  +VG VG++     K+   CV   +K    E ++ 
Sbjct: 329 DVQTSEGQTETDVLLTGSTNGSMSFSQVGGVGRNYDGGTKWRADCVKNYVKGRTDEHNEV 388

Query: 173 PEHIWRLNKASILMPSSVSCIKLFGKHPSCAT-DGGSVRHALITSLGSETTGGSIYALNL 231
            + +++ N+A++LM S +S I+L  K  S A  DG  V  AL T+LGSET+GGS+Y L+L
Sbjct: 389 LKPVFKPNRAALLMSSRISSIRLGPKCSSHAVNDGHIVGRALFTTLGSETSGGSVYTLDL 448

Query: 232 DNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASW 291
             PL++GP                                  GTNLG A VD+ETG  SW
Sbjct: 449 VEPLNLGP----------------------------------GTNLGGASVDLETGTISW 474

Query: 292 VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND 351
               KSD+ AQQ++ SGNV+LCG RNGAIVTVD R+ +   S R    HRIPY+   +  
Sbjct: 475 FLHCKSDVFAQQIVSSGNVILCGLRNGAIVTVDSRESRESLSGRL-ITHRIPYTSSDKKV 533

Query: 352 RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA 411
             +N++WF+LK +I+PSHT  MPSSISCL SLQ  DQYFLASSMDG+++LYD RL  RGA
Sbjct: 534 GGSNKEWFKLKGDIYPSHTIRMPSSISCLASLQFDDQYFLASSMDGSMRLYDLRLLQRGA 593

Query: 412 VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCW 471
           VQ YEGHVNSHTRIQ+GVD SERFVMSGGEDCKLR+WSI+SGEL+FEDKFS+SV S VC+
Sbjct: 594 VQCYEGHVNSHTRIQIGVDPSERFVMSGGEDCKLRLWSIKSGELLFEDKFSDSVISTVCF 653

Query: 472 RTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNW 512
           + +            EE    +  S  AW+G+ EGLF M W
Sbjct: 654 KAE------------EENQYKRDSSQGAWLGSLEGLFYMCW 682

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187728|ref|NP_197239.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332005035|gb|AED92418.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/530 (45%), Positives = 322/530 (60%), Gaps = 41/530 (7%)

Query: 1   MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATN-SSLTGATTSKL 59
           M  ELPGFYYD EKNRYFPIKGPIPG   SSS+  ++    +P + TN    T     KL
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSRTKQKPEPKPEQETNYQKRTKLKALKL 79

Query: 60  LQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEG 119
           + +REL GNV S++K   NF++E QK   S PVVWRY +T   GD  L+Q +++VQTP G
Sbjct: 80  VYSRELNGNVISVNKKMSNFRDEIQKTQASYPVVWRYGSTEDIGDTALKQFQVDVQTPVG 139

Query: 120 QFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRL 179
             R ++L+ GS  G  S+  V    Q     ++  P  V P  K+N TE  +APEHI R 
Sbjct: 140 LTRKNILVAGSAGGCLSILRVSKDRQVYDGVIECDPVSVLP-CKENDTEEREAPEHILRP 198

Query: 180 NKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGP 239
            +  ++  SS+S I+L G+    + +   V  ALIT+LGS T  GSI+ LN+   ++I  
Sbjct: 199 TQPCLVALSSISSIELIGRS-DASENSHPVNRALITTLGS-TGRGSIFILNVAEEVNI-- 254

Query: 240 NFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDI 299
              +  RS    V+S +CT+WT+D   + S A IGT+LGA +VD+ETG+ S+  RSKSD+
Sbjct: 255 ---LTPRSLQGNVSS-ECTIWTSDCNISGSHAAIGTDLGAGLVDLETGVGSYFLRSKSDV 310

Query: 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRV-TNEQW 358
            A Q   SGN+V CG RNGAIV+VD+R+R      R   RH+I Y    +     T +QW
Sbjct: 311 FALQFHQSGNIVHCGLRNGAIVSVDLRERPGRPFPRL-TRHQIRYQSSSKTGLTSTKKQW 369

Query: 359 FE-----------------LKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL 401
           FE                 L+ NI PSH  +MPSS++CL++L+  DQY +ASSMDGT+KL
Sbjct: 370 FEVLLRSSFLTSHNILFLQLQGNINPSHVIYMPSSLTCLKTLKTSDQYLMASSMDGTIKL 429

Query: 402 YDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK 460
           YD R+  RG  VQ+YEGHVNSHT I+ G+D SERF++SGG+DC  RIWSI+SG+L+ E+K
Sbjct: 430 YDQRMVKRGVGVQTYEGHVNSHTPIEFGIDPSERFILSGGDDCYTRIWSIKSGQLMSENK 489

Query: 461 FSNSVPSAVCWRTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRM 510
           FSNSVPS VCW        + +   H            AW+G++E +F +
Sbjct: 490 FSNSVPSVVCWSADERQRDRKDSIGH-----------GAWLGSREAIFNL 528

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811881|ref|XP_002873824.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319661|gb|EFH50083.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/513 (43%), Positives = 298/513 (58%), Gaps = 55/513 (10%)

Query: 1   MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATN-SSLTGATTSKL 59
           M  ELPGFYYD EKNRYFPIKGPIPG   SSS+  ++    +P + TN    T     KL
Sbjct: 12  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSRTKQKPDPKPEQETNYQKRTKIKALKL 71

Query: 60  LQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEG 119
           + +REL GNV  ++K   NFK+E QK   S PVVWRY +T   GD  L+Q +++VQT  G
Sbjct: 72  VYSRELNGNVIPVNKKMSNFKDEIQKTQASYPVVWRYGSTEDIGDTALKQFQVDVQTSVG 131

Query: 120 QFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRL 179
             R ++L+ GS  G  S+  V    Q     ++  P  V PR K+N TE  +APE+IW+ 
Sbjct: 132 LTRKNILVAGSAGGCLSILRVSKDRQVYDGVIECDPVSVLPR-KENDTEEPEAPEYIWKP 190

Query: 180 NKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGP 239
            +  ++  S++S I+L G+      D     H  +  L + +  G++             
Sbjct: 191 AQPCLVALSTISSIELIGRF-----DASENSHPEVNILITRSLQGNV------------- 232

Query: 240 NFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDI 299
                         S +CT+WTAD   + S A IGT+LGAA+VD+ETG  S+  RSKSD+
Sbjct: 233 --------------SSECTIWTADCNISGSHAAIGTDLGAALVDLETGKGSYFLRSKSDV 278

Query: 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI-PYSRLQRNDRVTNEQW 358
              Q   SGN+V CG RNGAIV+VD+        +R    HR+ P   LQRN+  +    
Sbjct: 279 FTLQFHQSGNIVHCGLRNGAIVSVDLH-------TRYDINHRVKPVKLLQRNNGSSFPHS 331

Query: 359 FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEG 417
             L+ NI PSH  +MPSS++CL++L+  DQY +ASSMDGT  LYD R+  RG  VQ+YEG
Sbjct: 332 ILLQGNINPSHVIYMPSSVTCLKTLKTSDQYLMASSMDGT--LYDQRMVKRGVGVQTYEG 389

Query: 418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM 477
           HVNSHTRI+ G+D SERF+MSGG+DC  RIWSI+SG+L+ E+KFSNSVPS VCW      
Sbjct: 390 HVNSHTRIEFGIDPSERFLMSGGDDCYTRIWSIKSGQLMSENKFSNSVPSVVCWSADERQ 449

Query: 478 GPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRM 510
               +  I          S  AW+G++E +F +
Sbjct: 450 RDHQKDSI----------SHGAWLGSREAIFNL 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9755760|emb|CAC01732.1| hypothetical protein [Arabidopsis thaliana]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/512 (42%), Positives = 294/512 (57%), Gaps = 67/512 (13%)

Query: 1   MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATN-SSLTGATTSKL 59
           M  ELPGFYYD EKNRYFPIKGPIPG   SSS+  ++    +P + TN    T     KL
Sbjct: 20  MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSRTKQKPEPKPEQETNYQKRTKLKALKL 79

Query: 60  LQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEG 119
           + +REL GNV S++K   NF++E QK   S PVVWRY +T   GD  L+Q +++VQTP G
Sbjct: 80  VYSRELNGNVISVNKKMSNFRDEIQKTQASYPVVWRYGSTEDIGDTALKQFQVDVQTPVG 139

Query: 120 QFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRL 179
             R ++L+ GS  G  S+  V    Q     ++  P  V P  K+N TE  +APEHI R 
Sbjct: 140 LTRKNILVAGSAGGCLSILRVSKDRQVYDGVIECDPVSVLP-CKENDTEEREAPEHILRP 198

Query: 180 NKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGP 239
            +  ++  SS+S I+L G+     +D     H                           P
Sbjct: 199 TQPCLVALSSISSIELIGR-----SDASENSH---------------------------P 226

Query: 240 NFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDI 299
             +I+   ++    S +CT+WT+D   + S A IGT+LGA +VD+ETG+ S+  RSKSD+
Sbjct: 227 EVNILTPRSLQGNVSSECTIWTSDCNISGSHAAIGTDLGAGLVDLETGVGSYFLRSKSDV 286

Query: 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWF 359
            A Q   SGN+V CG RNGAIV+VD+R+R    +S                    N  + 
Sbjct: 287 FALQFHQSGNIVHCGLRNGAIVSVDLRERPAFLTSH-------------------NILFL 327

Query: 360 ELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGH 418
           +L+ NI PSH  +MPSS++CL++L+  DQY +ASSMDGT  LYD R+  RG  VQ+YEGH
Sbjct: 328 QLQGNINPSHVIYMPSSLTCLKTLKTSDQYLMASSMDGT--LYDQRMVKRGVGVQTYEGH 385

Query: 419 VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478
           VNSHT I+ G+D SERF++SGG+DC  RIWSI+SG+L+ E+KFSNSVPS VCW       
Sbjct: 386 VNSHTPIEFGIDPSERFILSGGDDCYTRIWSIKSGQLMSENKFSNSVPSVVCWSADERQR 445

Query: 479 PQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRM 510
            + +   H            AW+G++E +F +
Sbjct: 446 DRKDSIGH-----------GAWLGSREAIFNL 466

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111760|ref|XP_003557679.1| PREDICTED: uncharacterized protein LOC100843698 [Brachypodium distachyon]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/519 (40%), Positives = 301/519 (57%), Gaps = 24/519 (4%)

Query: 2   PQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSSLTGATTSKLLQ 61
           P+ELPGFYYDAEKNRYFPI GPIPG ++     +  P        T       T S+LL+
Sbjct: 3   PKELPGFYYDAEKNRYFPITGPIPGAAKRRRPPSPPPPPLADPPLTRRR-KRVTQSELLR 61

Query: 62  ARELRGN--VFSLSKGKCNFKEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEG 119
           ARE+ G   +FS    KC F+++ Q    SQP+ W Y+ T+   D  +E++   VQTP G
Sbjct: 62  AREMYGGGVMFSSGNSKCTFRQQCQHAQASQPLGWSYQGTSSMADKAVEELRTVVQTPSG 121

Query: 120 QFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRL 179
              + VL+TGS+NG   LF +G   Q+  D V+++    W  ++  K        +IW  
Sbjct: 122 LRESKVLVTGSINGTVRLFGLGTALQNFEDEVEYLSELAWTPLRKLKVAMKSGLANIWSP 181

Query: 180 NKASILMPSSVSCIKLFG-KHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIG 238
             A     SS++CIK FG K    AT   SV  AL+ +LGS  +GGS+Y ++L    D+ 
Sbjct: 182 ETAFSNFSSSITCIKKFGHKFRDAATTYSSVGRALVATLGSRGSGGSLYMIDLSLTTDLA 241

Query: 239 PNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSD 298
              S+     +  + S+  TVWTAD  ++ +Q  +G N GAA++++E    SW+   KSD
Sbjct: 242 -MVSLNAYGKIERLGSYNRTVWTADCSSDGTQVALGANNGAALLNLEKRSLSWMYHCKSD 300

Query: 299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQR----GCSSRAGRRHRIPYSRLQRNDRVT 354
           +L+QQ +HSGNVVLCG RNG+IV +DVR+R R    G +S    R  +P        +  
Sbjct: 301 VLSQQFMHSGNVVLCGLRNGSIVAIDVRQRHRNFPTGLASPGTARRTVPMLPATHQGKKK 360

Query: 355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS 414
           + Q  + K+    +    M S++  L +L   + YFL SSMDG++KL+D RL  +GAVQS
Sbjct: 361 SIQADKAKS----TRAISMSSAVCSLVALSSDENYFLGSSMDGSIKLFDLRLIQKGAVQS 416

Query: 415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474
           Y GHVNSHT + L VD SE  +MSGGED  +RIWSI++GE VFE + ++++ +A+CW   
Sbjct: 417 YVGHVNSHTHLPLAVDPSETLLMSGGEDSTVRIWSIKTGEQVFEKRVADTLFTALCW--- 473

Query: 475 RSMGPQ--IEGKIHEEFDLGQRHSWEAWIGTQEGLFRMN 511
               P+  ++      FDL  RHSW AW+G+++GL+ M+
Sbjct: 474 ----PESGLDVDRSSLFDL--RHSWGAWMGSRDGLYYMH 506

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	513
UNIPROTKB|Q58DC2	494	DCAF4 "DDB1- and CUL4-associat	0.171	0.178	0.395	6e-16
RGD|1306241	519	Dcaf4 "DDB1 and CUL4 associate	0.179	0.177	0.347	1.8e-13
UNIPROTKB|Q8WV16	495	DCAF4 "DDB1- and CUL4-associat	0.171	0.177	0.384	3.2e-12
POMBASE|SPAC12G12.10	420	wdr21 "WD repeat protein, huma	0.144	0.176	0.316	9e-07
UNIPROTKB|H3BN58	202	MLST8 "Target of rapamycin com	0.261	0.663	0.258	4.3e-05
UNIPROTKB|Q17QU5	326	MLST8 "Target of rapamycin com	0.261	0.411	0.258	0.00011
UNIPROTKB|Q9BVC4	326	MLST8 "Target of rapamycin com	0.261	0.411	0.258	0.00019
UNIPROTKB|H0YLU1	103	GNB5 "Guanine nucleotide-bindi	0.175	0.873	0.336	0.00027
WB|WBGene00006474	376	wdr-5.1 [Caenorhabditis elegan	0.128	0.175	0.366	0.00032
UNIPROTKB|Q17963	376	tag-125 "WD repeat-containing	0.128	0.175	0.366	0.00032

UNIPROTKB|Q58DC2 DCAF4 "DDB1- and CUL4-associated factor 4" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 6.0e-16, Sum P(3) = 6.0e-16
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:   366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI 425
             W +   F  S+++ +Q LQ  +Q  +AS M GT+KL+D R TT+  ++ YEGHVN +  +
Sbjct:   361 WKATCLFHDSAVTSVQILQ-EEQCLMASDMAGTIKLWDLR-TTK-CIRQYEGHVNEYAHL 417

Query:   426 QLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
              L V + E  +++ G+DC  RIWS+  G+L+
Sbjct:   418 PLHVHEEEGIMVAVGQDCYTRIWSLHDGQLL 448

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

RGD|1306241 Dcaf4 "DDB1 and CUL4 associated factor 4" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 33/95 (34%), Positives = 55/95 (57%)

Query:   362 KANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS 421
             +A  W +   F  S+++ +Q  +  +QY +AS M G +KL+D R T    V+ YEGHVN 
Sbjct:   359 QAKGWKATQIFHDSAVTSVQVFK-EEQYLMASDMAGKIKLWDLRATK--CVRQYEGHVNE 415

Query:   422 HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
             +  + L + + E  +++ G+DC  RIWS+    L+
Sbjct:   416 YAYLPLHMHEEEGILVAVGQDCYTRIWSLHDARLL 450

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|Q8WV16 DCAF4 "DDB1- and CUL4-associated factor 4" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
 Identities = 35/91 (38%), Positives = 56/91 (61%)

Query:   366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI 425
             W +   F  S+++ ++ LQ  +QY +AS M G +KL+D R TT+  V+ YEGHVN +  +
Sbjct:   362 WKATRLFHDSAVTSVRILQ-DEQYLMASDMAGKIKLWDLR-TTK-CVRQYEGHVNEYAYL 418

Query:   426 QLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
              L V + E  +++ G+DC  RIWS+    L+
Sbjct:   419 PLHVHEEEGILVAVGQDCYTRIWSLHDARLL 449

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

POMBASE|SPAC12G12.10 wdr21 "WD repeat protein, human WDR21 family" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 86 (35.3 bits), Expect = 9.0e-07, Sum P(3) = 9.0e-07
 Identities = 25/79 (31%), Positives = 39/79 (49%)

Query:   375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHR-LTTRG---AVQSYEGHVNSHTR-IQLGV 429
             SSI  +Q+L       L S ++  + LYD R L ++    ++ SY GH N   R + L  
Sbjct:   295 SSICSMQNLDFSQPKLLVSGLESKISLYDCRFLQSKKRPQSIMSYMGHSNLLERNLALMK 354

Query:   430 DQSERFVMSGGEDCKLRIW 448
             +++     S G+D  LR W
Sbjct:   355 NENGSIFSSAGDDYVLRFW 373

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0070913 "Ddb1-Wdr21 complex" evidence=IDA

UNIPROTKB|H3BN58 MLST8 "Target of rapamycin complex subunit LST8" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 38/147 (25%), Positives = 72/147 (48%)

Query:   359 FELKANIWPSHTTFMPSSI----SCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRGAVQ 413
             ++     W +H+     ++    S + +L++  D+  +A++    +++YD        + 
Sbjct:    20 YDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPII 79

Query:   414 SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP-SAVCWR 472
             SY+G VN +    +G  +  R++ +GGEDC  RIW +RS  L  +  F  + P + VC  
Sbjct:    80 SYDG-VNKNIA-SVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLH 137

Query:   473 TQRS---MGPQIEGKIHEEFDLGQRHS 496
               ++   +G Q  G IH  +DL   H+
Sbjct:   138 PNQAELIVGDQ-SGAIHI-WDLKTDHN 162

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

UNIPROTKB|Q17QU5 MLST8 "Target of rapamycin complex subunit LST8" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 38/147 (25%), Positives = 72/147 (48%)

Query:   359 FELKANIWPSHTTFMPSSI----SCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRGAVQ 413
             ++     W +H+     ++    S + +L++  D+  +A++    +++YD        + 
Sbjct:    20 YDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRTMIAAAGYQHIRMYDLNSNNPNPII 79

Query:   414 SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP-SAVCWR 472
             SY+G VN +    +G  +  R++ +GGEDC  RIW +RS  L  +  F  + P + VC  
Sbjct:    80 SYDG-VNKNVA-SVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLH 137

Query:   473 TQRS---MGPQIEGKIHEEFDLGQRHS 496
               ++   +G Q  G IH  +DL   H+
Sbjct:   138 PNQAELIVGDQ-SGAIHI-WDLKTDHN 162

GO:0005737 "cytoplasm" evidence=ISS

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|Q9BVC4 MLST8 "Target of rapamycin complex subunit LST8" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
 Identities = 38/147 (25%), Positives = 72/147 (48%)

Query:   359 FELKANIWPSHTTFMPSSI----SCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRGAVQ 413
             ++     W +H+     ++    S + +L++  D+  +A++    +++YD        + 
Sbjct:    20 YDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPII 79

Query:   414 SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP-SAVCWR 472
             SY+G VN +    +G  +  R++ +GGEDC  RIW +RS  L  +  F  + P + VC  
Sbjct:    80 SYDG-VNKNIA-SVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLH 137

Query:   473 TQRS---MGPQIEGKIHEEFDLGQRHS 496
               ++   +G Q  G IH  +DL   H+
Sbjct:   138 PNQAELIVGDQ-SGAIHI-WDLKTDHN 162

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H0YLU1 GNB5 "Guanine nucleotide-binding protein subunit beta-5" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00027, P = 0.00027
 Identities = 34/101 (33%), Positives = 50/101 (49%)

Query:   369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG 428
             HT ++ S+ S   S    D   L +S DGT  L+D  + +   +QS+ GH      + L 
Sbjct:     9 HTNYL-SACSFTNS----DMQILTASGDGTCALWD--VESGQLLQSFHGHGADVLCLDLA 61

Query:   429 VDQSERFVMSGGEDCKLRIWSIRSGELV--FEDKFS--NSV 465
               ++    +SGG D K  +W +RSG+ V  FE   S  NSV
Sbjct:    62 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSV 102

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

WB|WBGene00006474 wdr-5.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
 Identities = 26/71 (36%), Positives = 46/71 (64%)

Query:   388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKL 445
             +Y LAS++D T+KL+D    ++G  ++ Y GH NS   I      +  ++++SG EDCK+
Sbjct:   269 KYILASNLDSTLKLWDF---SKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKI 325

Query:   446 RIWSIRSGELV 456
              IW++++ E+V
Sbjct:   326 YIWNLQTREIV 336

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP

UNIPROTKB|Q17963 tag-125 "WD repeat-containing protein tag-125" [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
 Identities = 26/71 (36%), Positives = 46/71 (64%)

Query:   388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKL 445
             +Y LAS++D T+KL+D    ++G  ++ Y GH NS   I      +  ++++SG EDCK+
Sbjct:   269 KYILASNLDSTLKLWDF---SKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKI 325

Query:   446 RIWSIRSGELV 456
              IW++++ E+V
Sbjct:   326 YIWNLQTREIV 336

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	513
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 390 FLASSMDGTVKLYDHRLTTRGAVQSYEGH---VNSHTRIQLGVDQSERFVMSGGEDCKLR 446
            L+SS DGT+KL+D        + +  GH   VNS     +        + SG ED  +R
Sbjct: 192 LLSSSSDGTIKLWDLSTGK--CLGTLRGHENGVNS-----VAFSPDGYLLASGSEDGTIR 244

Query: 447 IWSIRSGELVFE-DKFSNSVPSAVCW 471
           +W +R+GE V      +NSV +++ W
Sbjct: 245 VWDLRTGECVQTLSGHTNSV-TSLAW 269

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH---VNSHTRIQLGVDQ 431
           S +S +       +   +SS D T+K++D  + T   + +  GH   VNS     +    
Sbjct: 94  SYVSSVAFSP-DGRILSSSSRDKTIKVWD--VETGKCLTTLRGHTDWVNS-----VAFSP 145

Query: 432 SERFVMSGGEDCKLRIWSIRSGELV 456
              FV S  +D  +++W +R+G+ V
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH---VNSHTRIQLGVDQSERFVMSGGED 442
              Y  + S D T++L+D  L T   V++  GH   V+S     +      R + S   D
Sbjct: 62  DGTYLASGSSDKTIRLWD--LETGECVRTLTGHTSYVSS-----VAFSPDGRILSSSSRD 114

Query: 443 CKLRIWSIRSGELVF 457
             +++W + +G+ + 
Sbjct: 115 KTIKVWDVETGKCLT 129

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG 428
            +T    S S + S         + S DGT++L+D R ++   +++  GH +S   +   
Sbjct: 235 RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR-SSSSLLRTLSGHSSSVLSVAFS 293

Query: 429 VDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS 464
            D   + + SG  D  +R+W + +G+L+        
Sbjct: 294 PD--GKLLASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446
                + S DGT++++D  L T   VQ+  GH NS T   L      + + SG  D  +R
Sbjct: 231 GYLLASGSEDGTIRVWD--LRTGECVQTLSGHTNSVT--SLAWSPDGKRLASGSADGTIR 286

Query: 447 IWS 449
           IW 
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446
             +  +SS DGT+KL+D  L T   V +  GH      +          ++S   D  ++
Sbjct: 147 GTFVASSSQDGTIKLWD--LRTGKCVATLTGHTGEVNSVA--FSPDGEKLLSSSSDGTIK 202

Query: 447 IWSIRSGELV 456
           +W + +G+ +
Sbjct: 203 LWDLSTGKCL 212

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI 447
           +     S DGT+K++D  L T   +++ +GH      +            SG  D  +R+
Sbjct: 22  KLLATGSGDGTIKVWD--LETGELLRTLKGHTGPVRDVAA-SADGTYLA-SGSSDKTIRL 77

Query: 448 WSIRSGELVFE 458
           W + +GE V  
Sbjct: 78  WDLETGECVRT 88

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH---VNSHTRIQLGVD 430
             S++ L            SS+DGT+KL+D R      + +  GH   V+S      G  
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LSTLAGHTDPVSSLAFSPDG-- 210

Query: 431 QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCW 471
                + SG  D  +R+W + +G+L+      +S      +
Sbjct: 211 --GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	513
KOG2695	425	consensus WD40 repeat protein [General function pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0296	399	consensus Angio-associated migratory cell protein	99.91
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.91
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.91
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.91
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.91
KOG0266	456	consensus WD40 repeat-containing protein [General	99.91
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.91
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
PTZ00421	493	coronin; Provisional	99.9
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.89
PTZ00420	568	coronin; Provisional	99.89
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG0296	399	consensus Angio-associated migratory cell protein	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.89
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.88
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.88
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.88
KOG0643	327	consensus Translation initiation factor 3, subunit	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG0643	327	consensus Translation initiation factor 3, subunit	99.87
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0641	350	consensus WD40 repeat protein [General function pr	99.86
KOG0289	506	consensus mRNA splicing factor [General function p	99.86
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.85
PTZ00421	493	coronin; Provisional	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.84
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.83
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.82
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.82
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.82
KOG0641	350	consensus WD40 repeat protein [General function pr	99.82
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.82
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.81
KOG0639	705	consensus Transducin-like enhancer of split protei	99.81
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.81
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.8
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.8
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.8
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.8
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.8
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.8
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.79
KOG0639	705	consensus Transducin-like enhancer of split protei	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.79
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.78
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.78
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.77
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.76
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.76
KOG2096	420	consensus WD40 repeat protein [General function pr	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
KOG2048	691	consensus WD40 repeat protein [General function pr	99.75
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.74
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.74
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.74
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.73
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.73
KOG2055	514	consensus WD40 repeat protein [General function pr	99.73
KOG2048	691	consensus WD40 repeat protein [General function pr	99.73
KOG2055	514	consensus WD40 repeat protein [General function pr	99.73
KOG1539	910	consensus WD repeat protein [General function pred	99.72
KOG1273	405	consensus WD40 repeat protein [General function pr	99.72
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.72
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.71
KOG1273	405	consensus WD40 repeat protein [General function pr	99.69
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.69
KOG4328	498	consensus WD40 protein [Function unknown]	99.68
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG0267	825	consensus Microtubule severing protein katanin p80	99.68
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.67
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.67
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.67
KOG0646	476	consensus WD40 repeat protein [General function pr	99.67
KOG1274	933	consensus WD40 repeat protein [General function pr	99.66
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.66
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.65
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.65
KOG4227	609	consensus WD40 repeat protein [General function pr	99.63
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.61
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.61
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.59
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.59
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.57
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.56
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.56
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.56
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.55
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.53
KOG1310	758	consensus WD40 repeat protein [General function pr	99.53
KOG1188	376	consensus WD40 repeat protein [General function pr	99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.51
KOG1188	376	consensus WD40 repeat protein [General function pr	99.5
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.49
KOG0649	325	consensus WD40 repeat protein [General function pr	99.49
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.48
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.48
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.48
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.47
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.47
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.46
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.46
COG2319	466	FOG: WD40 repeat [General function prediction only	99.44
KOG1334	559	consensus WD40 repeat protein [General function pr	99.43
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.41
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.4
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.39
PRK11028	330	6-phosphogluconolactonase; Provisional	99.39
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.39
KOG1963	792	consensus WD40 repeat protein [General function pr	99.38
PRK03629	429	tolB translocation protein TolB; Provisional	99.38
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.36
KOG2321	703	consensus WD40 repeat protein [General function pr	99.35
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.34
PRK11028	330	6-phosphogluconolactonase; Provisional	99.33
COG2319	466	FOG: WD40 repeat [General function prediction only	99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.33
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.32
PRK05137	435	tolB translocation protein TolB; Provisional	99.3
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.29
KOG2139	445	consensus WD40 repeat protein [General function pr	99.29
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.29
PRK04922	433	tolB translocation protein TolB; Provisional	99.29
KOG1963	792	consensus WD40 repeat protein [General function pr	99.27
KOG4227	609	consensus WD40 repeat protein [General function pr	99.27
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.27
KOG2139	445	consensus WD40 repeat protein [General function pr	99.26
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.25
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.24
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.21
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.2
PRK04922	433	tolB translocation protein TolB; Provisional	99.19
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.19
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.17
PRK01742	429	tolB translocation protein TolB; Provisional	99.16
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.16
PRK02889	427	tolB translocation protein TolB; Provisional	99.16
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.15
PRK05137	435	tolB translocation protein TolB; Provisional	99.15
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.1
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.09
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
KOG4547	541	consensus WD40 repeat-containing protein [General	99.08
PRK04792	448	tolB translocation protein TolB; Provisional	99.04
KOG1310	758	consensus WD40 repeat protein [General function pr	99.02
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.99
PRK01029	428	tolB translocation protein TolB; Provisional	98.99
PRK01029	428	tolB translocation protein TolB; Provisional	98.99
PRK03629	429	tolB translocation protein TolB; Provisional	98.96
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.96
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.96
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.93
KOG2315	566	consensus Predicted translation initiation factor	98.93
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.93
PRK00178	430	tolB translocation protein TolB; Provisional	98.91
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.9
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.89
KOG1334	559	consensus WD40 repeat protein [General function pr	98.85
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.83
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.82
KOG2321	703	consensus WD40 repeat protein [General function pr	98.81
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.79
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.79
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.76
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.75
KOG4547	541	consensus WD40 repeat-containing protein [General	98.73
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.67
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.67
KOG2315	566	consensus Predicted translation initiation factor	98.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.65
PRK04792	448	tolB translocation protein TolB; Provisional	98.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.55
PRK04043	419	tolB translocation protein TolB; Provisional	98.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.53
COG4946	668	Uncharacterized protein related to the periplasmic	98.53
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.5
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.44
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.42
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.41
KOG2695	425	consensus WD40 repeat protein [General function pr	98.39
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.37
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.31
COG4946	668	Uncharacterized protein related to the periplasmic	98.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.26
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.21
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.19
KOG2314	698	consensus Translation initiation factor 3, subunit	98.15
KOG2314	698	consensus Translation initiation factor 3, subunit	98.13
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.12
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.1
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.09
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.04
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.03
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.02
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.98
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.98
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.93
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.92
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.81
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.77
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.73
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.7
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.68
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.68
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.6
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.59
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.56
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.56
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.47
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.43
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.4
KOG3621	726	consensus WD40 repeat-containing protein [General	97.36
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.36
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.33
PRK02888	635	nitrous-oxide reductase; Validated	97.31
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.27
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.25
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.18
KOG2395	644	consensus Protein involved in vacuole import and d	97.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.12
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.11
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.03
KOG3621	726	consensus WD40 repeat-containing protein [General	97.0
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.97
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.96
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.94
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.84
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.7
PRK02888	635	nitrous-oxide reductase; Validated	96.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.39
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.34
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.25
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.21
KOG2444	238	consensus WD40 repeat protein [General function pr	96.16
COG3391	381	Uncharacterized conserved protein [Function unknow	96.14
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.14
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.12
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.9
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.54
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.49
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.24
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.01
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.99
PHA02713	557	hypothetical protein; Provisional	94.84
COG3391	381	Uncharacterized conserved protein [Function unknow	94.69
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.68
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.67
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.66
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.66
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.65
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.52
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.44
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.4
PRK13616	591	lipoprotein LpqB; Provisional	94.4
KOG2395	644	consensus Protein involved in vacuole import and d	94.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.89
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.88
PHA02713	557	hypothetical protein; Provisional	93.56
COG5167	776	VID27 Protein involved in vacuole import and degra	93.44
KOG2444	238	consensus WD40 repeat protein [General function pr	93.41
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.91
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.86
PHA03098	534	kelch-like protein; Provisional	92.17
COG4590	733	ABC-type uncharacterized transport system, permeas	91.7
PHA02790	480	Kelch-like protein; Provisional	91.69
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.63
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.37
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.33
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.32
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.96
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.81
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	90.75
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	90.5
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.05
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	89.27
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.92
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.44
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.17
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.14
COG5276	370	Uncharacterized conserved protein [Function unknow	87.89
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.76
PHA03098	534	kelch-like protein; Provisional	87.72
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.19
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.03
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.44
PRK13616	591	lipoprotein LpqB; Provisional	86.42
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.2
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	85.86
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	85.76
PRK10115	686	protease 2; Provisional	85.64
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.21
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	84.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.37
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.89
PHA02790	480	Kelch-like protein; Provisional	83.89
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	83.8
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	83.75
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.08
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.91
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.08
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	81.9
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	81.59
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	80.58

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.1e-42  Score=308.37  Aligned_cols=413  Identities=23%  Similarity=0.247  Sum_probs=287.7

Q ss_pred             CCCCCCccccccccCccccccCCCCCCCCCCcccccCCCCCCCccccccc-ccccchhhhhhhhhcCCceEEecCCchhh
Q 037288            1 MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSS-LTGATTSKLLQARELRGNVFSLSKGKCNF   79 (513)
Q Consensus         1 ~~~~~pg~y~d~~~~~yf~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~l~~~r~~~g~~~~~~~~~~~~   79 (513)
                      |-|+|||||||+||||||||.++-...+++.+++++++++++  ++...+ |++.+...+.-.|+..++...++.-...+
T Consensus         3 ~~p~~pg~yy~~ek~ryf~i~~~~~~~ss~~~tke~~~p~~~--~e~~~qkrTk~kgln~vfnrs~~l~~~qf~~~~~~~   80 (425)
T KOG2695|consen    3 GLPFIPGYYYNSEKKRYFRISSGQSTPSSNIYTKERLKPGKR--FENISQKRTKGKGLNPVFNRSTYLFDRQFSQYPYSC   80 (425)
T ss_pred             CCCCCCcceeccccceeEEccCCCCCCCccchhhhcCCcchh--hhhhhHHhhhhcccccccchhhhhhhhhhhhccchh
Confidence            678999999999999999996522222223455444444443  345555 77777777777888888888888888899


Q ss_pred             HHHHHHHhccCCeEEEEcccccccchhheeeeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccc
Q 037288           80 KEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVW  159 (513)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~  159 (513)
                      +++.++.+++.+++|.+ ... +++.+..+..+.++++.+.+.+    .|+..|.+..-...++.+. +..++..+....
T Consensus        81 rd~~~~~~~~~~v~~~~-~~~-~gs~l~k~~~~~~~t~~~lt~k----~gs~~Gc~~~~~~~~~~~~-e~~v~~~~~~~~  153 (425)
T KOG2695|consen   81 RDDRDYCAKNLKVINLR-QLP-VGTELQKIGWLREVTTIILTSK----NGSILGCCLTPEDKSGVAN-EKYTSEGSIQDF  153 (425)
T ss_pred             HHHHHHHHhhcceeeee-cCC-ccHHHHHhhhhhhccceeeecc----CcceeeeEeeecccccccc-ceeEeccccccc
Confidence            99999999999999999 555 8899999998889999988866    6777777777666555433 344444433333


Q ss_pred             cccccccccccCCCCCccccCcceeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCC
Q 037288          160 PRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGP  239 (513)
Q Consensus       160 ~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  239 (513)
                      |   .++     +. .+|.|-.    +..                     .+.+.|..+......+-.++....-.   .
T Consensus       154 p---~~~-----v~-l~~~~~~----hL~---------------------~~~~~cfv~ls~~~s~e~~~~~s~~~---~  196 (425)
T KOG2695|consen  154 P---LSR-----IG-LSNNPIS----HLV---------------------CNAMQCFVSLSPSLSNEGQFHISTYN---Q  196 (425)
T ss_pred             c---ccc-----cc-ccccCHH----Hhh---------------------hhhHhheeecCCCcccceEeehhhhh---h
Confidence            3   233     55 6775431    111                     12222222222222222121111000   0


Q ss_pred             CcccccCceeEEeccccC-cEEEEEEcC--CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC
Q 037288          240 NFSIIRRSTMHLVASFKC-TVWTADFCT--NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR  316 (513)
Q Consensus       240 ~~~~~~~~~~~~~~~h~~-~V~~~~~s~--~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~  316 (513)
                      ..+-   .....+...+. ..+.++|+-  .|-.+++|.+.+|.+-|+++|....+. .+++|.+++|+..+++++.|++
T Consensus       197 s~pe---~n~~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcR  272 (425)
T KOG2695|consen  197 SLPE---SNNYMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCR  272 (425)
T ss_pred             cccc---CCCCceeeecCCcchhhhhhhccceeeecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEeccc
Confidence            0010   00111111111 224446654  344566778888999999998765544 7889999999999999999999


Q ss_pred             CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          317 NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       317 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      +|.|..+|+|....                                |..++.+.+.|+++++++..+..++++|++.+++
T Consensus       273 ngeI~~iDLR~rnq--------------------------------G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~  320 (425)
T KOG2695|consen  273 NGEIFVIDLRCRNQ--------------------------------GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMT  320 (425)
T ss_pred             CCcEEEEEeeeccc--------------------------------CCCcceEEEEcCcchhhhhhhccccceEeeccCc
Confidence            99999999998743                                2355778999999999998888889999999999


Q ss_pred             CeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe----EEEEE
Q 037288          397 GTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP----SAVCW  471 (513)
Q Consensus       397 g~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v----~~v~~  471 (513)
                      |+|++||+|..+.+ .+++|+||.+....+.+.+++++..++++|.|+..+||.++.|+++.++......+    .+++|
T Consensus       321 gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~  400 (425)
T KOG2695|consen  321 GKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF  400 (425)
T ss_pred             CceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence            99999999954433 59999999998888888889999999999999999999999999999987655433    33333


Q ss_pred             cCCCceEEeeCCCeeeeeccCCcccceeeeeeccceeee
Q 037288          472 RTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRM  510 (513)
Q Consensus       472 ~p~~~~~~t~~~~~~~~~~~~~~~~~~~~~gs~~g~~~~  510 (513)
                      ...               +.......|+|++.++++|-+
T Consensus       401 ~sr---------------~~k~~~g~G~ll~~re~Ly~f  424 (425)
T KOG2695|consen  401 DSR---------------LGKARGGPGLLLAVREDLYCF  424 (425)
T ss_pred             hcc---------------cccccCCCeeEeeeccceecc
Confidence            322               134445788999999998854

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.8e-38  Score=288.26  Aligned_cols=319  Identities=13%  Similarity=0.090  Sum_probs=246.1

Q ss_pred             hhhhhhhhhcCCceEEecCCchhhHHHHHHHhccCCeEE---------------EEcccccccchhheeeeeeeeCCCCc
Q 037288           56 TSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVW---------------RYEATNQTGDITLEQIELNVQTPEGQ  120 (513)
Q Consensus        56 ~~~l~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~g~  120 (513)
                      +.+|..+|+.   +..+|.+|+..+-+.+..+...|.-=               ....++...+.++...+   ++.   
T Consensus       115 p~eL~~AR~~---ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~---fS~---  185 (459)
T KOG0272|consen  115 PVELRVARLW---IANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCS---FSR---  185 (459)
T ss_pred             CHHHHHHHHH---HHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeE---eec---
Confidence            4578888887   77777777766664444443333320               00011122333444333   333   


Q ss_pred             eeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCC
Q 037288          121 FRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHP  200 (513)
Q Consensus       121 ~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~  200 (513)
                       +.+.|+||+.+|.+++|++  +..+....++.+              ..++..+.|+|....+.+              
T Consensus       186 -ds~~laT~swsG~~kvW~~--~~~~~~~~l~gH--------------~~~v~~~~fhP~~~~~~l--------------  234 (459)
T KOG0272|consen  186 -DSKHLATGSWSGLVKVWSV--PQCNLLQTLRGH--------------TSRVGAAVFHPVDSDLNL--------------  234 (459)
T ss_pred             -CCCeEEEeecCCceeEeec--CCcceeEEEecc--------------ccceeeEEEccCCCccce--------------
Confidence             3468999999999999998  332223333333              333777777776211111              


Q ss_pred             ccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eE
Q 037288          201 SCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GA  279 (513)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i  279 (513)
                                       ..+..+|.+.+|.+.+.            ..+..+.+|...|..++|+|+|++|++++-+ +-
T Consensus       235 -----------------at~s~Dgtvklw~~~~e------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW  285 (459)
T KOG0272|consen  235 -----------------ATASADGTVKLWKLSQE------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW  285 (459)
T ss_pred             -----------------eeeccCCceeeeccCCC------------cchhhhhcchhhheeeeecCCCceeeecccccch
Confidence                             12345788877776632            2356699999999999999999999998755 58


Q ss_pred             EEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEe
Q 037288          280 AMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQW  358 (513)
Q Consensus       280 ~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w  358 (513)
                      ++||++++..+.... |...|.+++|++||.++++|+.|..-+|||+|+++.+.   .+.+|..+|.+|+|         
T Consensus       286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im---~L~gH~k~I~~V~f---------  353 (459)
T KOG0272|consen  286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM---FLAGHIKEILSVAF---------  353 (459)
T ss_pred             hhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEE---EecccccceeeEeE---------
Confidence            999999998655544 77789999999999999999999999999999999855   89999999999554         


Q ss_pred             ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEE
Q 037288          359 FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVM  437 (513)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~  437 (513)
                                               +|+|..||||+.|++++|||+|  ....+.++.+|.+.|+.  +.|+| .|.+|+
T Consensus       354 -------------------------sPNGy~lATgs~Dnt~kVWDLR--~r~~ly~ipAH~nlVS~--Vk~~p~~g~fL~  404 (459)
T KOG0272|consen  354 -------------------------SPNGYHLATGSSDNTCKVWDLR--MRSELYTIPAHSNLVSQ--VKYSPQEGYFLV  404 (459)
T ss_pred             -------------------------CCCceEEeecCCCCcEEEeeec--ccccceecccccchhhh--eEecccCCeEEE
Confidence                                     6699999999999999999999  66689999999999988  88998 789999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          438 SGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       438 sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +++.|++++||+..+++++.++.+|++.|.++.+++++..++|++-|
T Consensus       405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D  451 (459)
T KOG0272|consen  405 TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD  451 (459)
T ss_pred             EcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence            99999999999999999999999999999999999999999998877

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=270.38  Aligned_cols=300  Identities=17%  Similarity=0.190  Sum_probs=240.2

Q ss_pred             eeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEE
Q 037288          114 VQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCI  193 (513)
Q Consensus       114 ~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si  193 (513)
                      .++|+|.    .|++|+.|-++|+|++.+....  .              .-+.+.+-+.++.|+|++.-+.        
T Consensus       122 ~fsp~g~----~l~tGsGD~TvR~WD~~TeTp~--~--------------t~KgH~~WVlcvawsPDgk~iA--------  173 (480)
T KOG0271|consen  122 QFSPTGS----RLVTGSGDTTVRLWDLDTETPL--F--------------TCKGHKNWVLCVAWSPDGKKIA--------  173 (480)
T ss_pred             EecCCCc----eEEecCCCceEEeeccCCCCcc--e--------------eecCCccEEEEEEECCCcchhh--------
Confidence            3777664    6999999999999999655422  1              2333344477888888833322        


Q ss_pred             EecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-----CC
Q 037288          194 KLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-----NP  268 (513)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~g  268 (513)
                                               ++..+|.+.+|+..+....           ...+.+|...|.+++|.|     ..
T Consensus       174 -------------------------SG~~dg~I~lwdpktg~~~-----------g~~l~gH~K~It~Lawep~hl~p~~  217 (480)
T KOG0271|consen  174 -------------------------SGSKDGSIRLWDPKTGQQI-----------GRALRGHKKWITALAWEPLHLVPPC  217 (480)
T ss_pred             -------------------------ccccCCeEEEecCCCCCcc-----------cccccCcccceeEEeecccccCCCc
Confidence                                     3446888888887766555           345899999999999976     56


Q ss_pred             CEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288          269 SQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR  346 (513)
Q Consensus       269 ~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  346 (513)
                      ++||+++ |+.++|||+..+.++..+. |..+|+|+.|--+ .+|++|+.|++|++|+...+..   .+.+.+|...|+.
T Consensus       218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~---~r~lkGHahwvN~  293 (480)
T KOG0271|consen  218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL---CRELKGHAHWVNH  293 (480)
T ss_pred             cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH---HHhhcccchheee
Confidence            7888876 5669999999998877665 8899999999643 5899999999999999988776   5699999999999


Q ss_pred             EeeCC---------------------------------------eEEEeE-------eecccCcccceeEeecCCCceEE
Q 037288          347 LQRND---------------------------------------RVTNEQ-------WFELKANIWPSHTTFMPSSISCL  380 (513)
Q Consensus       347 v~~~~---------------------------------------~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~  380 (513)
                      ++.+.                                       ++++|+       |+....+....+...| ..+..-
T Consensus       294 lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~  372 (480)
T KOG0271|consen  294 LALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNH  372 (480)
T ss_pred             eeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheee
Confidence            98772                                       367776       5544433221222233 344444


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288          381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK  460 (513)
Q Consensus       381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~  460 (513)
                      +.|+||+.++|+++.|..|++||.+  ..+.+.+|.||...|+.  ++|+.|.++|++|+.|.++++|++++.++...+.
T Consensus       373 V~fSPd~r~IASaSFDkSVkLW~g~--tGk~lasfRGHv~~VYq--vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp  448 (480)
T KOG0271|consen  373 VSFSPDGRYIASASFDKSVKLWDGR--TGKFLASFRGHVAAVYQ--VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP  448 (480)
T ss_pred             EEECCCccEEEEeecccceeeeeCC--CcchhhhhhhccceeEE--EEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence            6999999999999999999999998  66699999999999977  9999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          461 FSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       461 ~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +|...|.++.|+|++..+++.+.|-.
T Consensus       449 Gh~DEVf~vDwspDG~rV~sggkdkv  474 (480)
T KOG0271|consen  449 GHADEVFAVDWSPDGQRVASGGKDKV  474 (480)
T ss_pred             CCCceEEEEEecCCCceeecCCCceE
Confidence            99999999999999999998887743

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.4e-35  Score=265.26  Aligned_cols=275  Identities=17%  Similarity=0.268  Sum_probs=211.4

Q ss_pred             cCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCC
Q 037288          231 LDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSG  308 (513)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~  308 (513)
                      +..|+.+|++.++..++  ..+.||.++|.|+.|+|+|..|++|+.+ ++++||+.+..+..+.. |...|.|++|+|||
T Consensus        92 vyqpqavfrvrpvtrCs--sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg  169 (480)
T KOG0271|consen   92 VYQPQAVFRVRPVTRCS--SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG  169 (480)
T ss_pred             Eeccchhhcccccceec--cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc
Confidence            34788889999988875  5699999999999999999999999654 59999999998887776 88889999999999


Q ss_pred             cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--------eEEEeE-------eecccCcccceeEeec
Q 037288          309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--------RVTNEQ-------WFELKANIWPSHTTFM  373 (513)
Q Consensus       309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--------~~~s~~-------w~~~~~~~~~~~~~~~  373 (513)
                      ..||+|+.||+|++||..+++..  -+.+.+|...|++++|.|        .+++++       |+...+... .....|
T Consensus       170 k~iASG~~dg~I~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgH  246 (480)
T KOG0271|consen  170 KKIASGSKDGSIRLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGH  246 (480)
T ss_pred             chhhccccCCeEEEecCCCCCcc--cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE-EEeccC
Confidence            99999999999999999988764  468999999999999998        455554       887665432 111233


Q ss_pred             CCCceEEEE---------------------------------------------------EcCCCC--------------
Q 037288          374 PSSISCLQS---------------------------------------------------LQLYDQ--------------  388 (513)
Q Consensus       374 ~~~v~~~~~---------------------------------------------------~~~~~~--------------  388 (513)
                      ..+|+|+.+                                                   |.|.++              
T Consensus       247 T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~  326 (480)
T KOG0271|consen  247 TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE  326 (480)
T ss_pred             ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence            445555543                                                   111122              


Q ss_pred             -----------EEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          389 -----------YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       389 -----------~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                                 .|++|+.|.++.+|+... ..+++..+.+|...|..  +.||||+++|++++.|..|++||.++|+.+.
T Consensus       327 rY~~~~~~~~erlVSgsDd~tlflW~p~~-~kkpi~rmtgHq~lVn~--V~fSPd~r~IASaSFDkSVkLW~g~tGk~la  403 (480)
T KOG0271|consen  327 RYEAVLKDSGERLVSGSDDFTLFLWNPFK-SKKPITRMTGHQALVNH--VSFSPDGRYIASASFDKSVKLWDGRTGKFLA  403 (480)
T ss_pred             HHHHhhccCcceeEEecCCceEEEecccc-cccchhhhhchhhheee--EEECCCccEEEEeecccceeeeeCCCcchhh
Confidence                       255555555555555431 22367788899998877  9999999999999999999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCCceEEeeCCCeeee-eccCCcccceeeeeeccceeeeecC
Q 037288          458 EDKFSNSVPSAVCWRTQRSMGPQIEGKIHEE-FDLGQRHSWEAWIGTQEGLFRMNWS  513 (513)
Q Consensus       458 ~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~~-~~~~~~~~~~~~~gs~~g~~~~~~~  513 (513)
                      +|++|-.+|..++|+.+..++++++.|---. ++.....-..-+-|..|-+|-+.||
T Consensus       404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws  460 (480)
T KOG0271|consen  404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS  460 (480)
T ss_pred             hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence            9999999999999999999999998885521 1121111222345667777766665

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=1.5e-30  Score=257.97  Aligned_cols=197  Identities=16%  Similarity=0.194  Sum_probs=180.9

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ..++.||.++|+.+.|+|+.++|++++++ ++++|.+.+..++..+. |..+|+.++|+|-|.++|+|+.|++-++|...
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            45599999999999999999999999875 59999999998877776 77889999999999999999999999999988


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ...+   ++.+.+|...|.|+                                  .|+|+.+|+++||.|.+|++||+. 
T Consensus       524 ~~~P---lRifaghlsDV~cv----------------------------------~FHPNs~Y~aTGSsD~tVRlWDv~-  565 (707)
T KOG0263|consen  524 HNKP---LRIFAGHLSDVDCV----------------------------------SFHPNSNYVATGSSDRTVRLWDVS-  565 (707)
T ss_pred             cCCc---hhhhcccccccceE----------------------------------EECCcccccccCCCCceEEEEEcC-
Confidence            7655   67999999998885                                  456699999999999999999997 


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                       ....++.|.||.++|++  ++|+|+|++|++|+.||.|.+||+.+++++..+..|.+.|.++.|+.++.+||++++|-.
T Consensus       566 -~G~~VRiF~GH~~~V~a--l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  566 -TGNSVRIFTGHKGPVTA--LAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             -CCcEEEEecCCCCceEE--EEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence             55599999999999988  999999999999999999999999999999999999999999999999999999999876

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=4.2e-28  Score=209.63  Aligned_cols=234  Identities=13%  Similarity=0.121  Sum_probs=187.5

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEE
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQ  302 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l  302 (513)
                      -.+.+|++.+...-          .+.++.+|++.|.++.|..+|+.+++|++++ ++|||++...+.+.+++.++|+++
T Consensus        61 qhvRlyD~~S~np~----------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~v  130 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPN----------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTV  130 (311)
T ss_pred             CeeEEEEccCCCCC----------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceE
Confidence            35666666643321          3678999999999999999999999998765 999999998888999999999999


Q ss_pred             EEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE--------eecccCc----ccce
Q 037288          303 QVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKAN----IWPS  368 (513)
Q Consensus       303 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~----~~~~  368 (513)
                      ..+|+...|++|..+|.|++||+.+.....  .-.+....+|.++...+  .++++.        |++....    +.|.
T Consensus       131 vlhpnQteLis~dqsg~irvWDl~~~~c~~--~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~  208 (311)
T KOG0315|consen  131 VLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV  208 (311)
T ss_pred             EecCCcceEEeecCCCcEEEEEccCCcccc--ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence            999999999999999999999999875432  23455667889988888  444433        8887643    3344


Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                      ..+.....-.-...++|++++||+++.|.+++||+.... -+....+++|...+..  ++||.||.||++|+.|+.+++|
T Consensus       209 ~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWd--c~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  209 HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWD--CAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEe--eeeccCccEEEecCCCCceeec
Confidence            455544433333478999999999999999999998622 2355678899988755  9999999999999999999999


Q ss_pred             eCCCCeEEEEecCCCCCeEEEEEc
Q 037288          449 SIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       449 d~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      ++..++.+..+.+|..+..+++.+
T Consensus       286 ~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  286 DLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ccccCceeeecCCcccccEEEEee
Confidence            999999999998887776666654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1e-28  Score=218.24  Aligned_cols=231  Identities=17%  Similarity=0.148  Sum_probs=196.3

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      .+|++|...|+++.|++|.+.+++++. +.+.|||.-+......+.-+ ..|..++|+|.|+++|+|+.|..+.||++..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            569999999999999999999999875 55999999888777767644 4599999999999999999999999999986


Q ss_pred             Cccc---cccccccccCcCeEEEeeCC--eEEEeE-------eecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEe
Q 037288          328 RQRG---CSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASS  394 (513)
Q Consensus       328 ~~~~---~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s  394 (513)
                      .+..   +..+.+.+|.+.+.++.|-+  .+++++       ||+.+++..... ..|...|.++ .++| +++.|++|+
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~sl-sl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSL-SLSPSDGNTFVSGG  206 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEE-ecCCCCCCeEEecc
Confidence            5221   22457999999999999988  888887       999999865222 2456677776 6777 999999999


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC--CCCeEEEEEc
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS--NSVPSAVCWR  472 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~--~~~v~~v~~~  472 (513)
                      -|+..+|||+|  ...++++|.+|...|..  +.|.|+|.-+++|+.|++.++||++..+.+..+...  ..+|++++|+
T Consensus       207 cD~~aklWD~R--~~~c~qtF~ghesDINs--v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS  282 (343)
T KOG0286|consen  207 CDKSAKLWDVR--SGQCVQTFEGHESDINS--VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS  282 (343)
T ss_pred             cccceeeeecc--CcceeEeecccccccce--EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence            99999999999  77799999999999988  899999999999999999999999999988887643  4679999999


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      ..+.++..+..|+.
T Consensus       283 ~SGRlLfagy~d~~  296 (343)
T KOG0286|consen  283 KSGRLLFAGYDDFT  296 (343)
T ss_pred             ccccEEEeeecCCc
Confidence            99776666555544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.5e-28  Score=217.15  Aligned_cols=196  Identities=18%  Similarity=0.182  Sum_probs=173.6

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ..+.+|++-+.|+.|-.|+.+|.+.+|.+..+||+++++.+..+. |.++|.+++++| +++.+++|+.|+..++||+|.
T Consensus       139 r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  139 RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             eeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            458999999999999998877777788889999999999877766 888999999999 899999999999999999999


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      +..   .+.|.+|...|.+|.|                                  .|+|.-|++|+.|+++++||+|  
T Consensus       219 ~~c---~qtF~ghesDINsv~f----------------------------------fP~G~afatGSDD~tcRlyDlR--  259 (343)
T KOG0286|consen  219 GQC---VQTFEGHESDINSVRF----------------------------------FPSGDAFATGSDDATCRLYDLR--  259 (343)
T ss_pred             cce---eEeecccccccceEEE----------------------------------ccCCCeeeecCCCceeEEEeec--
Confidence            976   5699999999999554                                  5699999999999999999999  


Q ss_pred             CccceEEecCC--CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          408 TRGAVQSYEGH--VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       408 ~~~~~~~~~~h--~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ....+..|...  ..+++.  ++||..|++|++|..|.++.+||.-.++.+..+.+|+..|+++..+|++..++|.+-|.
T Consensus       260 aD~~~a~ys~~~~~~gitS--v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  260 ADQELAVYSHDSIICGITS--VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             CCcEEeeeccCcccCCcee--EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence            66677777632  234444  89999999999999999999999999999999999999999999999999999988774


Q ss_pred             e
Q 037288          486 H  486 (513)
Q Consensus       486 ~  486 (513)
                      .
T Consensus       338 ~  338 (343)
T KOG0286|consen  338 T  338 (343)
T ss_pred             h
Confidence            3

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.6e-29  Score=233.50  Aligned_cols=224  Identities=11%  Similarity=0.080  Sum_probs=196.5

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCc
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      +-+.+|..+.|+.++..|++|+ +|.++||+..+...+.++. |.+.|.++.|+|.  +.-+++|+.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            5567999999999999999997 5569999999887666555 8889999999997  5689999999999999999876


Q ss_pred             cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      .   +..+.+|...|..++|+|   .+.+++       ||+.++... ...-.|...|.++ +|.++|.++++|+.|..-
T Consensus       253 ~---l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~i-af~~DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  253 P---LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSI-AFQPDGSLAATGGLDSLG  327 (459)
T ss_pred             c---hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh-Hhhccccccccee-EecCCCceeeccCccchh
Confidence            5   669999999999999999   666666       888776533 2233455667775 889999999999999999


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceE
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMG  478 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~  478 (513)
                      +|||+|  +..++..+.+|..+|..  ++|+|+|..|++||.|++++|||++..+.+.++..|.+.|+.|+|.|. +.++
T Consensus       328 RvWDlR--tgr~im~L~gH~k~I~~--V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  328 RVWDLR--TGRCIMFLAGHIKEILS--VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             heeecc--cCcEEEEecccccceee--EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence            999999  66799999999999866  999999999999999999999999999999999999999999999995 8999


Q ss_pred             EeeCCCee
Q 037288          479 PQIEGKIH  486 (513)
Q Consensus       479 ~t~~~~~~  486 (513)
                      +|++-|-.
T Consensus       404 ~TasyD~t  411 (459)
T KOG0272|consen  404 VTASYDNT  411 (459)
T ss_pred             EEcccCcc
Confidence            99998866

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=211.19  Aligned_cols=231  Identities=18%  Similarity=0.239  Sum_probs=203.3

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +.+..+|...|.+++.+.|+..+++| +|..+.+||+++|+..+.++ |.+.|..++|+.+..++++|+.|.++++||.|
T Consensus        52 iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR  131 (307)
T KOG0316|consen   52 IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR  131 (307)
T ss_pred             eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence            45688999999999999999988877 55669999999999888877 77889999999999999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      +....+ ++.+....+.|.+|+.+. .|++|+       |+++.+.+.   .-....+|+|+ .++++++..++++.|++
T Consensus       132 S~s~eP-iQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~---sDy~g~pit~v-s~s~d~nc~La~~l~st  206 (307)
T KOG0316|consen  132 SRSFEP-IQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS---SDYFGHPITSV-SFSKDGNCSLASSLDST  206 (307)
T ss_pred             cCCCCc-cchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceee---hhhcCCcceeE-EecCCCCEEEEeeccce
Confidence            998887 899999999999999998 888888       888888754   33456678885 89999999999999999


Q ss_pred             EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCC--C
Q 037288          399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQ--R  475 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~--~  475 (513)
                      +++.|-.  ..+.++.|+||.+.-+.++++++....++++|++||.|++||+.+.+++..+..+..+ +..+.++|.  .
T Consensus       207 lrLlDk~--tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  207 LRLLDKE--TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             eeecccc--hhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence            9999975  4458999999999888888999999999999999999999999999999999988887 899999999  4


Q ss_pred             ceEEeeCCCee
Q 037288          476 SMGPQIEGKIH  486 (513)
Q Consensus       476 ~~~~t~~~~~~  486 (513)
                      .+.|+..+++.
T Consensus       285 f~~A~~~~~~~  295 (307)
T KOG0316|consen  285 FITATGHGDLF  295 (307)
T ss_pred             eeEecCCceec
Confidence            55566666554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2e-28  Score=226.81  Aligned_cols=318  Identities=17%  Similarity=0.147  Sum_probs=241.1

Q ss_pred             ccccchhhhhhhhhcCCceEEecCCchhhHH-HHHHHhccCCeEEEEcccccccchhheeeeeeeeCCCCceeeeeEEec
Q 037288           51 LTGATTSKLLQARELRGNVFSLSKGKCNFKE-EFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTG  129 (513)
Q Consensus        51 ~~~~~~~~l~~~r~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg  129 (513)
                      +.-.++..|.++|+.||+..+  .+...... .++.+-++++.+   +.+...+.+++..+.         . .+.++||
T Consensus       173 ~l~~~aq~ls~~rKkrg~k~p--~~la~~d~~~~~~q~ash~gL---H~t~~pgi~ald~~~---------s-~~~ilTG  237 (506)
T KOG0289|consen  173 KLEDKAQVLSQERKKRGKKLP--EKLATTDELSCLLQVASHTGL---HSTSTPGITALDIIP---------S-SSKILTG  237 (506)
T ss_pred             HHHHHHHHHHHHhhhccccCC--cccccHHHHHHHHhcCCCcce---eccCCCCeeEEeecC---------C-CCcceec
Confidence            444456689999999999999  55555554 456677889988   888888888888777         4 6789999


Q ss_pred             cccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCccccCCCcc
Q 037288          130 SVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSV  209 (513)
Q Consensus       130 ~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~~~~~~  209 (513)
                      |.|..+.+|+.  +..++...+..+         ..+     ++.+..+|........+                     
T Consensus       238 G~d~~av~~d~--~s~q~l~~~~Gh---------~kk-----i~~v~~~~~~~~v~~aS---------------------  280 (506)
T KOG0289|consen  238 GEDKTAVLFDK--PSNQILATLKGH---------TKK-----ITSVKFHKDLDTVITAS---------------------  280 (506)
T ss_pred             CCCCceEEEec--chhhhhhhccCc---------ceE-----EEEEEeccchhheeecC---------------------
Confidence            99999999997  333333334433         333     55555555422222122                     


Q ss_pred             cceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCc
Q 037288          210 RHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGM  288 (513)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~  288 (513)
                                  .+-.            +++|+....++...+..|..+|+.+..+|+|.||+++++++ ....|++++.
T Consensus       281 ------------ad~~------------i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~  336 (506)
T KOG0289|consen  281 ------------ADEI------------IRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS  336 (506)
T ss_pred             ------------Ccce------------EEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence                        1222            33333333334456888999999999999999999998766 6777999999


Q ss_pred             EEEEeeeC-C--CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcc
Q 037288          289 ASWVCRSK-S--DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANI  365 (513)
Q Consensus       289 ~~~~~~~~-~--~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~  365 (513)
                      ++....++ +  .+++.+|+|||.+|.+|..||.|+|||+.++..   +..|.+|.++|.+|.|                
T Consensus       337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i~F----------------  397 (506)
T KOG0289|consen  337 QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAISF----------------  397 (506)
T ss_pred             EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccCCCCCCceeEEEe----------------
Confidence            88777764 3  389999999999999999999999999999886   5599999999999655                


Q ss_pred             cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC-ceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN-SHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~-~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                                        +.+|.+|++++.|+.|++||+|  +...+++|.-... ++.  .++|++.|.+|+.+|.|=.
T Consensus       398 ------------------sENGY~Lat~add~~V~lwDLR--Kl~n~kt~~l~~~~~v~--s~~fD~SGt~L~~~g~~l~  455 (506)
T KOG0289|consen  398 ------------------SENGYWLATAADDGSVKLWDLR--KLKNFKTIQLDEKKEVN--SLSFDQSGTYLGIAGSDLQ  455 (506)
T ss_pred             ------------------ccCceEEEEEecCCeEEEEEeh--hhcccceeeccccccce--eEEEcCCCCeEEeecceeE
Confidence                              5699999999999999999999  5556666653332 343  4899999999999988855


Q ss_pred             EEEEeC--CCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          445 LRIWSI--RSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       445 v~vwd~--~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      |++++-  .++.++..+..|.+..+++.|.....++++++.|-
T Consensus       456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~  498 (506)
T KOG0289|consen  456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA  498 (506)
T ss_pred             EEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence            555552  26778888888888999999999999999888773

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=6.2e-27  Score=221.84  Aligned_cols=331  Identities=12%  Similarity=0.116  Sum_probs=233.1

Q ss_pred             eeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeee---
Q 037288          110 IELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILM---  186 (513)
Q Consensus       110 ~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~---  186 (513)
                      ..+...+|.|.    +++.|...|.||||+.......+.++++-.              .+.+..+.|+++...+..   
T Consensus        62 vtVAkySPsG~----yiASGD~sG~vRIWdtt~~~hiLKnef~v~--------------aG~I~Di~Wd~ds~RI~avGE  123 (603)
T KOG0318|consen   62 VTVAKYSPSGF----YIASGDVSGKVRIWDTTQKEHILKNEFQVL--------------AGPIKDISWDFDSKRIAAVGE  123 (603)
T ss_pred             eEEEEeCCCce----EEeecCCcCcEEEEeccCcceeeeeeeeec--------------ccccccceeCCCCcEEEEEec
Confidence            34566788875    799999999999999855432333333322              233778888877533222   


Q ss_pred             -----------------------cccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCccc
Q 037288          187 -----------------------PSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSI  243 (513)
Q Consensus       187 -----------------------~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  243 (513)
                                             ...|.+..+-+.++....              .+..++.+.+|.=  |+-.      
T Consensus       124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~--------------T~sdDn~v~ffeG--PPFK------  181 (603)
T KOG0318|consen  124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIA--------------TGSDDNTVAFFEG--PPFK------  181 (603)
T ss_pred             CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEE--------------eccCCCeEEEeeC--CCee------
Confidence                                   111223333332222111              1123333333321  1111      


Q ss_pred             ccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee----eCCCeEEEEEecCCcEEEEEeCCC
Q 037288          244 IRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR----SKSDILAQQVIHSGNVVLCGFRNG  318 (513)
Q Consensus       244 ~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~~~~~~l~sg~~dg  318 (513)
                          --.++..|..-|+|+.|+|||.++++. +|+++.+||-.+|+.+..+.    |++.|++++|+||+..|++++.|.
T Consensus       182 ----Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk  257 (603)
T KOG0318|consen  182 ----FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK  257 (603)
T ss_pred             ----eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence                124577899999999999999999865 67889999999999887776    888999999999999999999999


Q ss_pred             eEEEEECCCCcccc----------------------------------------ccccccccCcCeEEEeeCC---eEEE
Q 037288          319 AIVTVDVRKRQRGC----------------------------------------SSRAGRRHRIPYSRLQRND---RVTN  355 (513)
Q Consensus       319 ~i~iwd~~~~~~~~----------------------------------------~~~~~~~h~~~v~~v~~~~---~~~s  355 (513)
                      +++|||+.+.+...                                        .+..+.+|...|+++..++   .+++
T Consensus       258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S  337 (603)
T KOG0318|consen  258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS  337 (603)
T ss_pred             eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence            99999986543311                                        2456789999999999988   6777


Q ss_pred             eE-------eecccCcccce-----------------------------eEe-------------ecCCC----------
Q 037288          356 EQ-------WFELKANIWPS-----------------------------HTT-------------FMPSS----------  376 (513)
Q Consensus       356 ~~-------w~~~~~~~~~~-----------------------------~~~-------------~~~~~----------  376 (513)
                      ++       |+...+.....                             +.+             +...+          
T Consensus       338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~  417 (603)
T KOG0318|consen  338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG  417 (603)
T ss_pred             eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence            76       65544321100                             000             00000          


Q ss_pred             ---------------------------ceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE
Q 037288          377 ---------------------------ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV  429 (513)
Q Consensus       377 ---------------------------v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~  429 (513)
                                                 ....++++|++..+++|+.|+.|++|.+.-...........|.+++++  +++
T Consensus       418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~--vay  495 (603)
T KOG0318|consen  418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD--VAY  495 (603)
T ss_pred             CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE--EEE
Confidence                                       001135789999999999999999999962222244456779999988  899


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          430 DQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       430 s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |||+.+|++|...+.|.+||+.+.+.... +..|.+.|.+++|+|+..++||.+.|-.
T Consensus       496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~  553 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN  553 (603)
T ss_pred             CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence            99999999999999999999999886333 5678999999999999999999999866

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=2.3e-27  Score=205.06  Aligned_cols=242  Identities=10%  Similarity=0.096  Sum_probs=201.6

Q ss_pred             CCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc--EEEEee-eCCCeEEEEEecCCcEEEEE
Q 037288          238 GPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM--ASWVCR-SKSDILAQQVIHSGNVVLCG  314 (513)
Q Consensus       238 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~--~~~~~~-~~~~V~~l~~~~~~~~l~sg  314 (513)
                      ++.|......+..+++-....|+.+.+.|+++.||+++...|++||+.++.  ++..+. |...|+++.|..+|+.+++|
T Consensus        22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg  101 (311)
T KOG0315|consen   22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG  101 (311)
T ss_pred             eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec
Confidence            555666666677888888889999999999999999999999999999876  455565 67889999999999999999


Q ss_pred             eCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEc
Q 037288          315 FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQ  384 (513)
Q Consensus       315 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~  384 (513)
                      +.||+++|||+|...    .+....|..+|.++..+|   .+++|.       ||+..........-.....+.++ ...
T Consensus       102 seDgt~kIWdlR~~~----~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl-~v~  176 (311)
T KOG0315|consen  102 SEDGTVKIWDLRSLS----CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL-TVM  176 (311)
T ss_pred             CCCceEEEEeccCcc----cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE-EEc
Confidence            999999999999854    457778889999999999   777775       99987754433222333455564 678


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCCc----cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEe
Q 037288          385 LYDQYFLASSMDGTVKLYDHRLTTR----GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-ELVFED  459 (513)
Q Consensus       385 ~~~~~l~s~s~dg~i~lwd~~~~~~----~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-~~~~~~  459 (513)
                      ++|.+++.+...|..++|++-....    .++..|+.|.+-+..  +.+|||+++|+++|.|.+++||++.+. +.-..+
T Consensus       177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~--C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l  254 (311)
T KOG0315|consen  177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR--CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL  254 (311)
T ss_pred             CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE--EEECCCCcEEEeecCCceEEEEecCCceeeEEEe
Confidence            8999999999999999999853221    267788999987644  889999999999999999999999988 666678


Q ss_pred             cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          460 KFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       460 ~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .+|...+..++|+.++.+++|.+.|-.
T Consensus       255 ~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  255 TGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             ecCCceEEeeeeccCccEEEecCCCCc
Confidence            899999999999999999999998844

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=3.6e-29  Score=230.19  Aligned_cols=266  Identities=19%  Similarity=0.223  Sum_probs=207.8

Q ss_pred             eeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEE
Q 037288          114 VQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCI  193 (513)
Q Consensus       114 ~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si  193 (513)
                      .=+|+|..    |++|+..|.+.||+.  ....++-.++-+              ...+..+.|+++             
T Consensus       103 ~WtPeGRR----Lltgs~SGEFtLWNg--~~fnFEtilQaH--------------Ds~Vr~m~ws~~-------------  149 (464)
T KOG0284|consen  103 RWTPEGRR----LLTGSQSGEFTLWNG--TSFNFETILQAH--------------DSPVRTMKWSHN-------------  149 (464)
T ss_pred             EEcCCCce----eEeecccccEEEecC--ceeeHHHHhhhh--------------cccceeEEEccC-------------
Confidence            35777764    999999999999997  222222222211              112444455444             


Q ss_pred             EecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEecccc-CcEEEEEEcCCCCEEE
Q 037288          194 KLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFK-CTVWTADFCTNPSQAV  272 (513)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~g~~l~  272 (513)
                           ...               +.+++..|++.+|+..-.             .+..+++|. ..|.+++|+|+...++
T Consensus       150 -----g~w---------------miSgD~gG~iKyWqpnmn-------------nVk~~~ahh~eaIRdlafSpnDskF~  196 (464)
T KOG0284|consen  150 -----GTW---------------MISGDKGGMIKYWQPNMN-------------NVKIIQAHHAEAIRDLAFSPNDSKFL  196 (464)
T ss_pred             -----CCE---------------EEEcCCCceEEecccchh-------------hhHHhhHhhhhhhheeccCCCCceeE
Confidence                 211               124557888888876622             123355554 8999999999888888


Q ss_pred             EEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288          273 IGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN  350 (513)
Q Consensus       273 s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  350 (513)
                      +++|++ |+|||....+....+. |.-.|.|++|+|...+|++|+.|..|++||.+++.+..   ++.+|+.-|.++   
T Consensus       197 t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tlh~HKntVl~~---  270 (464)
T KOG0284|consen  197 TCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAV---  270 (464)
T ss_pred             EecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hhhhccceEEEE---
Confidence            887665 9999998887655555 77779999999999999999999999999999999855   888898888884   


Q ss_pred             CeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEc
Q 037288          351 DRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVD  430 (513)
Q Consensus       351 ~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s  430 (513)
                                                     .|++++++|+++|.|..++++|+|  .-+.++++++|...++.  +.|+
T Consensus       271 -------------------------------~f~~n~N~Llt~skD~~~kv~DiR--~mkEl~~~r~Hkkdv~~--~~Wh  315 (464)
T KOG0284|consen  271 -------------------------------KFNPNGNWLLTGSKDQSCKVFDIR--TMKELFTYRGHKKDVTS--LTWH  315 (464)
T ss_pred             -------------------------------EEcCCCCeeEEccCCceEEEEehh--HhHHHHHhhcchhhhee--eccc
Confidence                                           556689999999999999999998  44578899999999877  8999


Q ss_pred             C-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          431 Q-SERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       431 ~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      | ...+|.+||.||.|..|.+...+++..+ ..|+..|++++|+|-+.+|+|.+.|-.
T Consensus       316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t  373 (464)
T KOG0284|consen  316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT  373 (464)
T ss_pred             cccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc
Confidence            9 5678999999999999999866666664 578899999999999999999887765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-27  Score=208.94  Aligned_cols=218  Identities=15%  Similarity=0.187  Sum_probs=173.9

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-eeCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-RSKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~~~~~V  299 (513)
                      .+-.+.+|.+...+..       -...+..+.||...|..++.+++|++.++++ |+.+++||+.+++....+ .|...|
T Consensus        36 rDk~ii~W~L~~dd~~-------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dV  108 (315)
T KOG0279|consen   36 RDKTIIVWKLTSDDIK-------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDV  108 (315)
T ss_pred             cceEEEEEEeccCccc-------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCce
Confidence            4555556666543221       1223566999999999999999999999885 666999999998765544 588899


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCce
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSIS  378 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~  378 (513)
                      ++++|++|...|++|++|.+|++|++.......   ... ++++.|.++.|+|                           
T Consensus       109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP---------------------------  158 (315)
T KOG0279|consen  109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSP---------------------------  158 (315)
T ss_pred             EEEEecCCCceeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcC---------------------------
Confidence            999999999999999999999999998665321   222 2267777766654                           


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288          379 CLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE  458 (513)
Q Consensus       379 ~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~  458 (513)
                           .++..+|++++.|++|++||++  ..+....+.||.+.++.  +.+||||..+++|+.||.+.+||+..++.+..
T Consensus       159 -----~~~~p~Ivs~s~DktvKvWnl~--~~~l~~~~~gh~~~v~t--~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  159 -----NESNPIIVSASWDKTVKVWNLR--NCQLRTTFIGHSGYVNT--VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             -----CCCCcEEEEccCCceEEEEccC--CcchhhccccccccEEE--EEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence                 1237789999999999999998  55577889999999887  89999999999999999999999999999988


Q ss_pred             ecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288          459 DKFSNSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       459 ~~~~~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      +.+ ..+|.+++|+|+ ..+.+..+..++
T Consensus       230 l~a-~~~v~sl~fspnrywL~~at~~sIk  257 (315)
T KOG0279|consen  230 LEA-FDIVNSLCFSPNRYWLCAATATSIK  257 (315)
T ss_pred             ccC-CCeEeeEEecCCceeEeeccCCceE
Confidence            764 778999999999 455555555555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=6.5e-27  Score=230.25  Aligned_cols=294  Identities=15%  Similarity=0.173  Sum_probs=216.8

Q ss_pred             eeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCC
Q 037288          121 FRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHP  200 (513)
Q Consensus       121 ~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~  200 (513)
                      ...++|++|-.+|.+.+|++  +...+...+...         ..+     +..+.|+-.+.-+.+.+            
T Consensus       275 ~~t~~lvvgFssG~f~Lyel--P~f~lih~LSis---------~~~-----I~t~~~N~tGDWiA~g~------------  326 (893)
T KOG0291|consen  275 KGTNLLVVGFSSGEFGLYEL--PDFNLIHSLSIS---------DQK-----ILTVSFNSTGDWIAFGC------------  326 (893)
T ss_pred             CCceEEEEEecCCeeEEEec--CCceEEEEeecc---------cce-----eeEEEecccCCEEEEcC------------
Confidence            66789999999999999998  554444333322         233     44444433322222222            


Q ss_pred             ccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-E
Q 037288          201 SCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-A  279 (513)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i  279 (513)
                                          ...|.+.+|            .|+..+.+...++|...+.+++++|||+++|+|++++ |
T Consensus       327 --------------------~klgQLlVw------------eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV  374 (893)
T KOG0291|consen  327 --------------------SKLGQLLVW------------EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV  374 (893)
T ss_pred             --------------------CccceEEEE------------EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence                                123455444            4444455666899999999999999999999997665 9


Q ss_pred             EEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccccc-CcCeEEEeeCC--eEE-
Q 037288          280 AMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH-RIPYSRLQRND--RVT-  354 (513)
Q Consensus       280 ~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~~~--~~~-  354 (513)
                      +|||..++-|..++. |.+.|++++|+..|+.+++.+.||+|+.||+...+.   ++++... .....+++..|  .++ 
T Consensus       375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~QfscvavD~sGelV~  451 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQFSCVAVDPSGELVC  451 (893)
T ss_pred             EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCceeeeEEEEcCCCCEEE
Confidence            999999999887776 999999999999999999999999999999988776   4566654 34567777777  444 


Q ss_pred             EeE--------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEE
Q 037288          355 NEQ--------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ  426 (513)
Q Consensus       355 s~~--------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~  426 (513)
                      +|.        |+..+|++. ...-.|.++|.++ +|+|.+..|++++.|.+|++||+-. ..+.+.++. +...+  +.
T Consensus       452 AG~~d~F~IfvWS~qTGqll-DiLsGHEgPVs~l-~f~~~~~~LaS~SWDkTVRiW~if~-s~~~vEtl~-i~sdv--l~  525 (893)
T KOG0291|consen  452 AGAQDSFEIFVWSVQTGQLL-DILSGHEGPVSGL-SFSPDGSLLASGSWDKTVRIWDIFS-SSGTVETLE-IRSDV--LA  525 (893)
T ss_pred             eeccceEEEEEEEeecCeee-ehhcCCCCcceee-EEccccCeEEeccccceEEEEEeec-cCceeeeEe-eccce--eE
Confidence            443        999999865 2233456666665 8999999999999999999999962 223566666 44444  44


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC--------------------CCCCeEEEEEcCCCceEEeeCC
Q 037288          427 LGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF--------------------SNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       427 ~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~--------------------~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      ++|.|+|+-|+++..||.|.+||...+.++..+.+                    ....++.+++++++..+++.+.
T Consensus       526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~  602 (893)
T KOG0291|consen  526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE  602 (893)
T ss_pred             EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence            99999999999999999999999988776644311                    1356899999999655554443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=3.9e-28  Score=228.01  Aligned_cols=253  Identities=18%  Similarity=0.175  Sum_probs=211.5

Q ss_pred             cccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeC
Q 037288          218 GSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSK  296 (513)
Q Consensus       218 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~  296 (513)
                      .++..++.+.+|++.+           ...++.++.+|..+|.+++|+++|..+.+++ |..+++||+++|+++..+...
T Consensus       231 LS~gmD~~vklW~vy~-----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~  299 (503)
T KOG0282|consen  231 LSGGMDGLVKLWNVYD-----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD  299 (503)
T ss_pred             EecCCCceEEEEEEec-----------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence            3445788898888874           2335788999999999999999999888775 566999999999999999888


Q ss_pred             CCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcc
Q 037288          297 SDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANI  365 (513)
Q Consensus       297 ~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~  365 (513)
                      ..++|+.|+||+ +++++|+.|+.|+.||+|+++.   ++.+..|-++|..+.|-+   ++++.+       |+...+..
T Consensus       300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             CCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence            889999999999 8999999999999999999986   569999999999999988   777776       88776654


Q ss_pred             cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                      ............-+ +..+|++.+++.-+.|+.|.++.+...-.. .-+.|+||...-+.+.+.|||||++|++|..||.
T Consensus       377 ik~i~~~~~hsmP~-~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  377 IKNIADPEMHTMPC-LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             chhhcchhhccCcc-eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence            32222222223333 367899999999999999999987522221 5567899998888889999999999999999999


Q ss_pred             EEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCe
Q 037288          445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKI  485 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~  485 (513)
                      +.+||.++-+++..++.|+.++..+.|+|. ...+||++-+-
T Consensus       456 v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  456 VNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG  497 (503)
T ss_pred             EEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc
Confidence            999999999999999999999999999999 67788887553

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=1.7e-26  Score=204.91  Aligned_cols=274  Identities=16%  Similarity=0.169  Sum_probs=213.0

Q ss_pred             eeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccc
Q 037288          111 ELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSV  190 (513)
Q Consensus       111 ~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i  190 (513)
                      ....+.|+|.    .+++||.|..|-+|++..+-++ ...+.              -+.+.+.++-|.++.         
T Consensus        51 ~~~~F~P~gs----~~aSgG~Dr~I~LWnv~gdceN-~~~lk--------------gHsgAVM~l~~~~d~---------  102 (338)
T KOG0265|consen   51 YTIKFHPDGS----CFASGGSDRAIVLWNVYGDCEN-FWVLK--------------GHSGAVMELHGMRDG---------  102 (338)
T ss_pred             EEEEECCCCC----eEeecCCcceEEEEeccccccc-eeeec--------------cccceeEeeeeccCC---------
Confidence            3445777775    6999999999999998544322 11111              122225555554441         


Q ss_pred             eEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCE
Q 037288          191 SCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQ  270 (513)
Q Consensus       191 ~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~  270 (513)
                                         .+++.     ..++..+..|+..+...            +...++|.+-|+.++-+.-|..
T Consensus       103 -------------------s~i~S-----~gtDk~v~~wD~~tG~~------------~rk~k~h~~~vNs~~p~rrg~~  146 (338)
T KOG0265|consen  103 -------------------SHILS-----CGTDKTVRGWDAETGKR------------IRKHKGHTSFVNSLDPSRRGPQ  146 (338)
T ss_pred             -------------------CEEEE-----ecCCceEEEEeccccee------------eehhccccceeeecCccccCCe
Confidence                               12211     12345555555554443            4558999999999997666665


Q ss_pred             E-EEEeCC-eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288          271 A-VIGTNL-GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ  348 (513)
Q Consensus       271 l-~s~s~~-~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  348 (513)
                      + .+|+|+ +++|||+++...+.++..+-.++++.|..++..+++|+-|+.|++||++......   .+.+|.++|+.  
T Consensus       147 lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~--  221 (338)
T KOG0265|consen  147 LVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TLSGHADTITG--  221 (338)
T ss_pred             EEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---EeecccCceee--
Confidence            4 477765 5999999999998888888899999999999999999999999999999888744   88999999988  


Q ss_pred             eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc--ceEEecCCC--CceeE
Q 037288          349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG--AVQSYEGHV--NSHTR  424 (513)
Q Consensus       349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~--~~v~~  424 (513)
                                                      ++.+++|.++++-++|.++++||+|.....  ++..+.+|.  -....
T Consensus       222 --------------------------------lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl  269 (338)
T KOG0265|consen  222 --------------------------------LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL  269 (338)
T ss_pred             --------------------------------EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence                                            466789999999999999999999854333  688888764  34455


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +.++|+|+++.+.+|+.|..+++||..+...+..+.+|.+.|+.++|+|...++.+++.|-
T Consensus       270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence            7889999999999999999999999999999999999999999999999988888887774

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=4.3e-28  Score=223.10  Aligned_cols=195  Identities=15%  Similarity=0.203  Sum_probs=171.8

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      .+++|..+|.++.|+++|.++++|.+++ |++|+..-........|+ ..|.+++|+|....+++++.||+|+|||.+..
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~  212 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP  212 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence            3789999999999999999999997766 999998765544444555 77999999999999999999999999999988


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      +...   .+.+|.-.|.+++|+|                                  ...++++|+.|..|++||.|  +
T Consensus       213 kee~---vL~GHgwdVksvdWHP----------------------------------~kgLiasgskDnlVKlWDpr--S  253 (464)
T KOG0284|consen  213 KEER---VLRGHGWDVKSVDWHP----------------------------------TKGLIASGSKDNLVKLWDPR--S  253 (464)
T ss_pred             chhh---eeccCCCCcceeccCC----------------------------------ccceeEEccCCceeEeecCC--C
Confidence            8744   7899999999977755                                  67789999999999999998  6


Q ss_pred             ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      ..++.++.+|.+.|..  +.|+|++++|+++|.|..++++|+++.+.++++++|...|++++|+|- ..+|++.+.|-.
T Consensus       254 g~cl~tlh~HKntVl~--~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  254 GSCLATLHGHKNTVLA--VKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             cchhhhhhhccceEEE--EEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence            6699999999998766  999999999999999999999999999999999999999999999998 567777776644

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-25  Score=196.15  Aligned_cols=260  Identities=12%  Similarity=0.117  Sum_probs=191.2

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      .++++.++.|-.+-+|++......+-..++           .-+-+...+..+.-++++..                   
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-----------~~~GHsH~v~dv~~s~dg~~-------------------   77 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVR-----------RLTGHSHFVSDVVLSSDGNF-------------------   77 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceee-----------eeeccceEecceEEccCCce-------------------
Confidence            578999999999999999666433211111           11112222333333333111                   


Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAM  281 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~v  281 (513)
                                    ..++..++.+.+|++.+..            ..+.+.+|...|.+++|++|.+.+++|+. .+|++
T Consensus        78 --------------alS~swD~~lrlWDl~~g~------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl  131 (315)
T KOG0279|consen   78 --------------ALSASWDGTLRLWDLATGE------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL  131 (315)
T ss_pred             --------------EEeccccceEEEEEecCCc------------EEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence                          1134467778788877543            34669999999999999999999999975 56999


Q ss_pred             EECCCCcEEEEeee--CCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeE
Q 037288          282 VDMETGMASWVCRS--KSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQ  357 (513)
Q Consensus       282 wd~~~~~~~~~~~~--~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~  357 (513)
                      ||+..+........  ..-|.|+.|+|+  ..+|++++.|++|++||+++.+...   .+.+|.+.++.           
T Consensus       132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v~t-----------  197 (315)
T KOG0279|consen  132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYVNT-----------  197 (315)
T ss_pred             eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccEEE-----------
Confidence            99986554444443  556999999998  5799999999999999999987643   88889888888           


Q ss_pred             eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288          358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM  437 (513)
Q Consensus       358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~  437 (513)
                                             +.++|||...++|+.||.+.+||++  +.+.+.++. |...|..  ++|+|+.-+|+
T Consensus       198 -----------------------~~vSpDGslcasGgkdg~~~LwdL~--~~k~lysl~-a~~~v~s--l~fspnrywL~  249 (315)
T KOG0279|consen  198 -----------------------VTVSPDGSLCASGGKDGEAMLWDLN--EGKNLYSLE-AFDIVNS--LCFSPNRYWLC  249 (315)
T ss_pred             -----------------------EEECCCCCEEecCCCCceEEEEEcc--CCceeEecc-CCCeEee--EEecCCceeEe
Confidence                                   4667899999999999999999998  666777776 6666666  89999987776


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEecCC---------CCCeEEEEEcCCCceEEee
Q 037288          438 SGGEDCKLRIWSIRSGELVFEDKFS---------NSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       438 sg~~Dg~v~vwd~~~~~~~~~~~~~---------~~~v~~v~~~p~~~~~~t~  481 (513)
                      .+. +-.|+|||+.++.++.+++..         .....+++|++++..|.+.
T Consensus       250 ~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g  301 (315)
T KOG0279|consen  250 AAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG  301 (315)
T ss_pred             ecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence            655 556999999999988875422         2235678999996544433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=4.7e-26  Score=213.27  Aligned_cols=267  Identities=15%  Similarity=0.152  Sum_probs=205.1

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      .+.|+||+.||.++||+.....   ...+.+                                +..+|.+++.+++....
T Consensus       247 G~~LatG~~~G~~riw~~~G~l---~~tl~~--------------------------------HkgPI~slKWnk~G~yi  291 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKDGNL---ISTLGQ--------------------------------HKGPIFSLKWNKKGTYI  291 (524)
T ss_pred             CCeEEEeecCcEEEEEecCchh---hhhhhc--------------------------------cCCceEEEEEcCCCCEE
Confidence            5789999999999999984433   122222                                22344444444444222


Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMV  282 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vw  282 (513)
                                     .++..+|.+.+|+..+...            .+.+.-|..+..++.|-.+..+..++.|+.|+|+
T Consensus       292 ---------------lS~~vD~ttilwd~~~g~~------------~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~  344 (524)
T KOG0273|consen  292 ---------------LSGGVDGTTILWDAHTGTV------------KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVC  344 (524)
T ss_pred             ---------------EeccCCccEEEEeccCceE------------EEeeeeccCCccceEEecCceEeecCCCceEEEE
Confidence                           1334567777777653322            3446667777788999877777777788889999


Q ss_pred             ECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecc
Q 037288          283 DMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFEL  361 (513)
Q Consensus       283 d~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~  361 (513)
                      .+....++.++ .|+++|.++.|+|.|.+|++++.|++++||.......   ...+.+|...|..+.|+|          
T Consensus       345 kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~---~~~l~~Hskei~t~~wsp----------  411 (524)
T KOG0273|consen  345 KVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS---VHDLQAHSKEIYTIKWSP----------  411 (524)
T ss_pred             EecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc---hhhhhhhccceeeEeecC----------
Confidence            98877665554 4889999999999999999999999999999877765   448999999999999877          


Q ss_pred             cCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC
Q 037288          362 KANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE  441 (513)
Q Consensus       362 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~  441 (513)
                                  .+++   ...+..+..+++++.|++|++||+.  ...++.+|..|..+|+.  ++|+|+|++|++|+.
T Consensus       412 ------------~g~v---~~n~~~~~~l~sas~dstV~lwdv~--~gv~i~~f~kH~~pVys--vafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  412 ------------TGPV---TSNPNMNLMLASASFDSTVKLWDVE--SGVPIHTLMKHQEPVYS--VAFSPNGRYLASGSL  472 (524)
T ss_pred             ------------CCCc---cCCCcCCceEEEeecCCeEEEEEcc--CCceeEeeccCCCceEE--EEecCCCcEEEecCC
Confidence                        1111   1233457789999999999999996  55599999999999977  999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          442 DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       442 Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ||.|.+|+++++++++.+.. .+.|..++|+.++..+..+..|
T Consensus       473 dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd  514 (524)
T KOG0273|consen  473 DGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASD  514 (524)
T ss_pred             CCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecC
Confidence            99999999999999999887 4459999999997666555444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=6.3e-26  Score=212.44  Aligned_cols=222  Identities=14%  Similarity=0.148  Sum_probs=185.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      ..|++++|+.+|.+||+|+.++ +++|+...+....+-.|+++|+++.|+.+|++|++++.|+++.+||..++..   .+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~---~q  312 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV---KQ  312 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE---EE
Confidence            5899999999999999997665 9999998665555556999999999999999999999999999999988875   34


Q ss_pred             cccccCcCeEEEeeCC--eEEEeEee-----cccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          336 AGRRHRIPYSRLQRND--RVTNEQWF-----ELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~--~~~s~~w~-----~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .+.-|..+-..|+|-.  .+++++-+     ..-+.-.|..++. |+..|.++ .|.|.+.+|++++.|++++||...  
T Consensus       313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al-k~n~tg~LLaS~SdD~TlkiWs~~--  389 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL-KWNPTGSLLASCSDDGTLKIWSMG--  389 (524)
T ss_pred             eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEE-EECCCCceEEEecCCCeeEeeecC--
Confidence            7778888877788865  55555411     1222223445554 45566665 788899999999999999999986  


Q ss_pred             CccceEEecCCCCceeEEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288          408 TRGAVQSYEGHVNSHTRIQLGVDQSE---------RFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       408 ~~~~~~~~~~h~~~v~~~~~~~s~~g---------~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      +..+...+.+|...++.  +.|+|+|         ..|++++.|++|++||+..+.+++++..|..+|.+++|+|++.++
T Consensus       390 ~~~~~~~l~~Hskei~t--~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  390 QSNSVHDLQAHSKEIYT--IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             CCcchhhhhhhccceee--EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence            56689999999998877  7888864         468999999999999999999999999999999999999999999


Q ss_pred             EeeCCCee
Q 037288          479 PQIEGKIH  486 (513)
Q Consensus       479 ~t~~~~~~  486 (513)
                      |+.+.|-.
T Consensus       468 AsGs~dg~  475 (524)
T KOG0273|consen  468 ASGSLDGC  475 (524)
T ss_pred             EecCCCCe
Confidence            99998866

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=1.1e-26  Score=230.73  Aligned_cols=281  Identities=17%  Similarity=0.227  Sum_probs=199.5

Q ss_pred             hccCCeEEEEcccccccchhheeeeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeecccccccccc
Q 037288           87 LISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNK  166 (513)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (513)
                      ..+.|.++-|.-.......++..+.         .+..+|+.|..|..|++|.+......-.......        .+..
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fS---------ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l--------~~~d  425 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFS---------DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDL--------SNID  425 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeec---------CCcchhhccccccEEEEEecchhhhccccchhhh--------cccc
Confidence            3555666666544433333444444         5566999999999999999964221100000000        0111


Q ss_pred             ccccCCCCCccccCcc-----eeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCc
Q 037288          167 TESSKAPEHIWRLNKA-----SILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNF  241 (513)
Q Consensus       167 ~~~~~~~~~~w~p~~~-----~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  241 (513)
                      .++..+....-+++..     ..-+..+|-+.++++..          +.++-|     ..++.+.+|++.         
T Consensus       426 ~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~----------rfLlSc-----SED~svRLWsl~---------  481 (707)
T KOG0263|consen  426 TESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR----------RFLLSC-----SEDSSVRLWSLD---------  481 (707)
T ss_pred             ccccchhhhhccccCCceeEEeecCCCceeeeeecccc----------cceeec-----cCCcceeeeecc---------
Confidence            1111111111111100     11223334444444433          444322     245566556555         


Q ss_pred             ccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCe
Q 037288          242 SIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       242 ~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~  319 (513)
                         ...++....||..+||++.|+|.|-++|+++++ +.++|......+.+++. |-++|.|++|+|+.+++++|+.|.+
T Consensus       482 ---t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t  558 (707)
T KOG0263|consen  482 ---TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT  558 (707)
T ss_pred             ---cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce
Confidence               344567789999999999999999999999765 48999999888877776 8889999999999999999999999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      |++||+.++..   ++.+.||.++|.++                                  .++|+|.+|++|+.||.|
T Consensus       559 VRlWDv~~G~~---VRiF~GH~~~V~al----------------------------------~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  559 VRLWDVSTGNS---VRIFTGHKGPVTAL----------------------------------AFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             EEEEEcCCCcE---EEEecCCCCceEEE----------------------------------EEcCCCceEeecccCCcE
Confidence            99999999976   66899999999995                                  456799999999999999


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      ++||+.  ....+..+.+|.+.+..  +.|+.+|..|++||.|++|++||+..
T Consensus       602 ~iWDl~--~~~~v~~l~~Ht~ti~S--lsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  602 KIWDLA--NGSLVKQLKGHTGTIYS--LSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEEcC--CCcchhhhhcccCceeE--EEEecCCCEEEecCCCCeEEEEEchh
Confidence            999997  55589999999888877  88999999999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.4e-26  Score=207.88  Aligned_cols=212  Identities=13%  Similarity=0.108  Sum_probs=181.8

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ++..+.+|...|.++.|-|.|.++++++ |.+|+.|++.+|-++.++. |...|..++.+.||.++++++.|.++++|-+
T Consensus       185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~  264 (406)
T KOG0295|consen  185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV  264 (406)
T ss_pred             HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence            5667889999999999999999999886 5569999999999999887 5566999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC-eEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                      .+++...   .+.+|..+|.+++|.| ..++.                    +....--...++++.+++.|++|++||+
T Consensus       265 ~t~~~k~---~lR~hEh~vEci~wap~~~~~~--------------------i~~at~~~~~~~~l~s~SrDktIk~wdv  321 (406)
T KOG0295|consen  265 ATKQCKA---ELREHEHPVECIAWAPESSYPS--------------------ISEATGSTNGGQVLGSGSRDKTIKIWDV  321 (406)
T ss_pred             ccchhhh---hhhccccceEEEEecccccCcc--------------------hhhccCCCCCccEEEeecccceEEEEec
Confidence            9887644   8999999999999977 10000                    0000000114679999999999999999


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .  ...++.++.+|.+.|..  ++|+|.|+||+++..|+++++||++++++..++..|..-|+++.|+.+..+++|++-|
T Consensus       322 ~--tg~cL~tL~ghdnwVr~--~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  322 S--TGMCLFTLVGHDNWVRG--VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             c--CCeEEEEEecccceeee--eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence            6  44599999999999987  9999999999999999999999999999999999999999999999998899988877


Q ss_pred             ee
Q 037288          485 IH  486 (513)
Q Consensus       485 ~~  486 (513)
                      ..
T Consensus       398 qt  399 (406)
T KOG0295|consen  398 QT  399 (406)
T ss_pred             ce
Confidence            44

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.4e-26  Score=219.97  Aligned_cols=196  Identities=12%  Similarity=0.126  Sum_probs=168.0

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCC-cEEEEee-eCCCeEEEEEec-CCcEEEEEeCCCeEEEEEC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETG-MASWVCR-SKSDILAQQVIH-SGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~-~~~~~~~-~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~  325 (513)
                      ..+.+|.+-|.|++.||...++.+++|+- |++||-+.+ .+..++. |..-|++++|+| |.+.+++++.|++|++|.+
T Consensus        91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl  170 (794)
T KOG0276|consen   91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL  170 (794)
T ss_pred             EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence            44788999999999999999999998876 999998865 3555555 777799999999 5589999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      .+..+..   ++.+|...|.+++|-+                                -.+..+|++|+.|..|++||..
T Consensus       171 gs~~~nf---Tl~gHekGVN~Vdyy~--------------------------------~gdkpylIsgaDD~tiKvWDyQ  215 (794)
T KOG0276|consen  171 GSPHPNF---TLEGHEKGVNCVDYYT--------------------------------GGDKPYLISGADDLTIKVWDYQ  215 (794)
T ss_pred             CCCCCce---eeeccccCcceEEecc--------------------------------CCCcceEEecCCCceEEEeecc
Confidence            8887754   8999999999988732                                2356799999999999999996


Q ss_pred             CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                        ...|+++++||.+.|..  +.|+|.-.++++|++||+|+||+..+-++..++......+.+++-.+. +.+++..+.+
T Consensus       216 --tk~CV~TLeGHt~Nvs~--v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  216 --TKSCVQTLEGHTNNVSF--VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             --hHHHHHHhhcccccceE--EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence              55599999999999988  899999999999999999999999999998888888889999998887 4544444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=2.7e-26  Score=207.95  Aligned_cols=197  Identities=15%  Similarity=0.210  Sum_probs=178.1

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ..+.+|.+.|.|+++.|...++++|+ |++|+|||+.+|+...++. |...|..+++++-..++++++.|+.|+.||+..
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            45889999999999999999999996 5569999999999877776 888899999999999999999999999999998


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .+.   ++.+.+|-..|.+++.                                  .|.-..|++|+.|..+++||+|  
T Consensus       225 nkv---IR~YhGHlS~V~~L~l----------------------------------hPTldvl~t~grDst~RvWDiR--  265 (460)
T KOG0285|consen  225 NKV---IRHYHGHLSGVYCLDL----------------------------------HPTLDVLVTGGRDSTIRVWDIR--  265 (460)
T ss_pred             hhh---HHHhccccceeEEEec----------------------------------cccceeEEecCCcceEEEeeec--
Confidence            876   5589999998888554                                  4567789999999999999999  


Q ss_pred             CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288          408 TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE  487 (513)
Q Consensus       408 ~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~  487 (513)
                      ....+..+.||.+.|..  +.+.|-+..+++|+.|++|++||++.|+...++.+|.-.|.+++.+|...+||+++.|..+
T Consensus       266 tr~~V~~l~GH~~~V~~--V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik  343 (460)
T KOG0285|consen  266 TRASVHVLSGHTNPVAS--VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIK  343 (460)
T ss_pred             ccceEEEecCCCCccee--EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccce
Confidence            67799999999999977  7777878889999999999999999999999999999999999999999999999988773

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=4.2e-25  Score=224.38  Aligned_cols=274  Identities=16%  Similarity=0.245  Sum_probs=211.0

Q ss_pred             eeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceE
Q 037288          113 NVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSC  192 (513)
Q Consensus       113 ~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~s  192 (513)
                      ..++++|.    .+++++.++.+++|...........              +-..+...+..++|+|++..+..      
T Consensus       165 ~~fs~~g~----~l~~~~~~~~i~~~~~~~~~~~~~~--------------~l~~h~~~v~~~~fs~d~~~l~s------  220 (456)
T KOG0266|consen  165 VDFSPDGR----ALAAASSDGLIRIWKLEGIKSNLLR--------------ELSGHTRGVSDVAFSPDGSYLLS------  220 (456)
T ss_pred             EEEcCCCC----eEEEccCCCcEEEeecccccchhhc--------------cccccccceeeeEECCCCcEEEE------
Confidence            34677775    4999999999999998332210111              11223334778888887332221      


Q ss_pred             EEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEE
Q 037288          193 IKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAV  272 (513)
Q Consensus       193 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~  272 (513)
                                                 +..++.+.+|++.           .....+.++.+|...|++++|+|+|++++
T Consensus       221 ---------------------------~s~D~tiriwd~~-----------~~~~~~~~l~gH~~~v~~~~f~p~g~~i~  262 (456)
T KOG0266|consen  221 ---------------------------GSDDKTLRIWDLK-----------DDGRNLKTLKGHSTYVTSVAFSPDGNLLV  262 (456)
T ss_pred             ---------------------------ecCCceEEEeecc-----------CCCeEEEEecCCCCceEEEEecCCCCEEE
Confidence                                       2245556566552           22235788999999999999999999999


Q ss_pred             EEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC--eEEEe
Q 037288          273 IGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP--YSRLQ  348 (513)
Q Consensus       273 s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~  348 (513)
                      +|+++ +|+|||+.++++...+. |...|.+++|++++++|++++.|+.|++||+.++.... +..+.++..+  ++.  
T Consensus       263 Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~--  339 (456)
T KOG0266|consen  263 SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC-LKLLSGAENSAPVTS--  339 (456)
T ss_pred             EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee-eecccCCCCCCceeE--
Confidence            98655 59999999999888887 77789999999999999999999999999999987321 2244444333  443  


Q ss_pred             eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeE-EEE
Q 037288          349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR-IQL  427 (513)
Q Consensus       349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~-~~~  427 (513)
                                                      +.|+|++.+|++++.|+.+++||++  ....+..+.+|...+.+ .+.
T Consensus       340 --------------------------------~~fsp~~~~ll~~~~d~~~~~w~l~--~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  340 --------------------------------VQFSPNGKYLLSASLDRTLKLWDLR--SGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             --------------------------------EEECCCCcEEEEecCCCeEEEEEcc--CCcceeeecccCCcceeEecc
Confidence                                            5678899999999999999999997  55688999999887433 234


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCe
Q 037288          428 GVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       428 ~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ..++.+.++++|+.|+.|++||+.++..+..+..| ...+..+.|+|...++++.+...
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG  444 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCC
Confidence            55788999999999999999999999999999999 88899999999988888887443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=190.57  Aligned_cols=199  Identities=11%  Similarity=0.077  Sum_probs=171.9

Q ss_pred             eEEeccccCcEEEEEEcCC-CCEEEEEeCC-eEEEEECCCCc---EEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEE
Q 037288          249 MHLVASFKCTVWTADFCTN-PSQAVIGTNL-GAAMVDMETGM---ASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIV  321 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~-g~~l~s~s~~-~i~vwd~~~~~---~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~  321 (513)
                      ++.+.+|.+.|+.++|+|- |..||+|+.+ .|++|+...+.   +...+.  |+..|.+++|+|.|++|++|+.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            5678999999999999997 8999988655 59999998543   333333  888899999999999999999999999


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL  401 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l  401 (513)
                      ||.-..+.... +.++.||...|.+++                                  |+++|++||+++.|..|-|
T Consensus        87 Iw~k~~~efec-v~~lEGHEnEVK~Va----------------------------------ws~sG~~LATCSRDKSVWi  131 (312)
T KOG0645|consen   87 IWKKEDGEFEC-VATLEGHENEVKCVA----------------------------------WSASGNYLATCSRDKSVWI  131 (312)
T ss_pred             EeecCCCceeE-EeeeeccccceeEEE----------------------------------EcCCCCEEEEeeCCCeEEE
Confidence            99888776666 778999999999954                                  4569999999999999999


Q ss_pred             EecCCCCcc---ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEEEecCCCCCeEEEEEcCCC
Q 037288          402 YDHRLTTRG---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR---SGELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       402 wd~~~~~~~---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~---~~~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                      |.+.  ...   ++..++.|...|..  +.|+|...+|+++|+|.+|++|.-.   ..++++++..|...|.+++|+|.+
T Consensus       132 We~d--eddEfec~aVL~~HtqDVK~--V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G  207 (312)
T KOG0645|consen  132 WEID--EDDEFECIAVLQEHTQDVKH--VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG  207 (312)
T ss_pred             EEec--CCCcEEEEeeeccccccccE--EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence            9986  322   88899999999988  9999999999999999999999876   457899999999999999999998


Q ss_pred             ceEEeeCCCee
Q 037288          476 SMGPQIEGKIH  486 (513)
Q Consensus       476 ~~~~t~~~~~~  486 (513)
                      .-+++++.|..
T Consensus       208 ~rl~s~sdD~t  218 (312)
T KOG0645|consen  208 SRLVSCSDDGT  218 (312)
T ss_pred             ceEEEecCCcc
Confidence            77777777655

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=6.8e-25  Score=215.89  Aligned_cols=231  Identities=14%  Similarity=0.124  Sum_probs=190.2

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEE----E-EeeeCCCeEEEEEecCC-cEEEEEeCCCeEEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMAS----W-VCRSKSDILAQQVIHSG-NVVLCGFRNGAIVT  322 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~----~-~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~i  322 (513)
                      +.+.||++.|.+++...+|.+|++|+. .++++|.++.+...    . ...|.+.|.+++++..+ .+|++++.|+++++
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~  438 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL  438 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence            368999999999997778889999975 45999988554322    1 22388899999998766 79999999999999


Q ss_pred             EECCCCcccc--ccc----cccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCC
Q 037288          323 VDVRKRQRGC--SSR----AGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLY  386 (513)
Q Consensus       323 wd~~~~~~~~--~~~----~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~  386 (513)
                      |++...+...  ...    +...|...|.+++.+|   .+.+|+       |++...  ....++..+....-.+.|++.
T Consensus       439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~--~l~~vLsGH~RGvw~V~Fs~~  516 (775)
T KOG0319|consen  439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL--RLLGVLSGHTRGVWCVSFSKN  516 (775)
T ss_pred             ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc--eEEEEeeCCccceEEEEeccc
Confidence            9998732211  011    3457999999999999   677777       888733  334555544444444589999


Q ss_pred             CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP  466 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v  466 (513)
                      .+.++|+|.|++|+||.+.  +..++++|.||...|.  ++.|-.+|+.|+|++.||-|++|++++++++.++..|...|
T Consensus       517 dq~laT~SgD~TvKIW~is--~fSClkT~eGH~~aVl--ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv  592 (775)
T KOG0319|consen  517 DQLLATCSGDKTVKIWSIS--TFSCLKTFEGHTSAVL--RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV  592 (775)
T ss_pred             cceeEeccCCceEEEEEec--cceeeeeecCccceeE--eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence            9999999999999999997  5669999999999874  48898999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCceEEeeCCCee
Q 037288          467 SAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       467 ~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ++++-+|...+++|.++|-.
T Consensus       593 WaL~~~~~~~~~~tgg~Dg~  612 (775)
T KOG0319|consen  593 WALSVSPLLDMFVTGGGDGR  612 (775)
T ss_pred             EEEeecCccceeEecCCCeE
Confidence            99999999889999998866

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5.6e-24  Score=209.73  Aligned_cols=225  Identities=15%  Similarity=0.155  Sum_probs=181.9

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeCC--eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTNL--GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~--~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      .++.+.--..+|..++|+..|.+||.|+.+  ++.||+..+...+...+ |-..+.+++++|||+++++|+.||+|+|||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            456666667899999999999999999765  69999998887655554 777899999999999999999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCC--CceEEEEEcCCCCEEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPS--SISCLQSLQLYDQYFLA  392 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s  392 (513)
                      ...+-+   +.++..|+..|+.+.|+.   .+++.+       ||+......  +++..+.  +..| ++..|.|..+++
T Consensus       379 ~~SgfC---~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf--RTft~P~p~Qfsc-vavD~sGelV~A  452 (893)
T KOG0291|consen  379 TQSGFC---FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF--RTFTSPEPIQFSC-VAVDPSGELVCA  452 (893)
T ss_pred             ccCceE---EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee--eeecCCCceeeeE-EEEcCCCCEEEe
Confidence            998877   459999999999999987   566655       998776643  4444444  4445 477888999999


Q ss_pred             EecCC-eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCeEEEE
Q 037288          393 SSMDG-TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFSNSVPSAVC  470 (513)
Q Consensus       393 ~s~dg-~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~~~~v~~v~  470 (513)
                      |+.|. .|.+|++.  ..+.+-.+.||.++|.+  ++|+|++..|++|+.|.+|++||+-... .+.++. +.+.+.+++
T Consensus       453 G~~d~F~IfvWS~q--TGqllDiLsGHEgPVs~--l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vs  527 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQ--TGQLLDILSGHEGPVSG--LSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVS  527 (893)
T ss_pred             eccceEEEEEEEee--cCeeeehhcCCCCccee--eEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEE
Confidence            99875 59999996  44488889999999987  8899999999999999999999997653 334443 456699999


Q ss_pred             EcCCCceEEeeCC
Q 037288          471 WRTQRSMGPQIEG  483 (513)
Q Consensus       471 ~~p~~~~~~t~~~  483 (513)
                      |.|++.-+|.+..
T Consensus       528 frPdG~elaVaTl  540 (893)
T KOG0291|consen  528 FRPDGKELAVATL  540 (893)
T ss_pred             EcCCCCeEEEEEe
Confidence            9999654443333

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-24  Score=217.92  Aligned_cols=199  Identities=12%  Similarity=0.121  Sum_probs=164.6

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .+..+.||...|.++.|+.++-+|.++.|.+|+||++....++.++.|..-|+||+|+| |.+++++|+.||.|+||++.
T Consensus       361 P~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  361 PFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             chhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence            36679999999999999999888888899999999999999999999999999999999 66999999999999999998


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeec-------CCCceEEEEEcCCCCE
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFM-------PSSISCLQSLQLYDQY  389 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~  389 (513)
                      ..+.    .-...-..-|++++|.|   ..+.|+       |+....++.....+..       ...|+.+.+++.+...
T Consensus       441 d~~V----v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~  516 (712)
T KOG0283|consen  441 DKKV----VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE  516 (712)
T ss_pred             cCee----EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence            7763    24444558899999999   555555       4444433333333322       2268888888777777


Q ss_pred             EEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          390 FLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      +++.+.|..|+|||++  +...+..|+|+.+.-..+...|+.||++|++|++|..|+||++..
T Consensus       517 vLVTSnDSrIRI~d~~--~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  517 VLVTSNDSRIRIYDGR--DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             EEEecCCCceEEEecc--chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            8888999999999998  677899999988776667789999999999999999999999743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=6.2e-24  Score=231.59  Aligned_cols=213  Identities=19%  Similarity=0.293  Sum_probs=170.1

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGMASWVCRSKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~  298 (513)
                      ..+|.+.+|++.+..            .+..+.+|...|++++|+| ++.+|++|+. +.|++||+.++..+..+.+...
T Consensus       552 ~~Dg~v~lWd~~~~~------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~  619 (793)
T PLN00181        552 NFEGVVQVWDVARSQ------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN  619 (793)
T ss_pred             eCCCeEEEEECCCCe------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC
Confidence            357888888876432            3456789999999999997 7889988865 5699999999988888877778


Q ss_pred             eEEEEEe-cCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288          299 ILAQQVI-HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI  377 (513)
Q Consensus       299 V~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v  377 (513)
                      |.+++|+ ++|.+|++|+.||.|++||++.... . +..+.+|...|.++.|                            
T Consensus       620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~-~~~~~~h~~~V~~v~f----------------------------  669 (793)
T PLN00181        620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-P-LCTMIGHSKTVSYVRF----------------------------  669 (793)
T ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-c-ceEecCCCCCEEEEEE----------------------------
Confidence            9999996 4689999999999999999987642 1 3456778777777544                            


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEecCCCC----ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288          378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTT----RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG  453 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~----~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~  453 (513)
                            . ++.+|++++.|+.|++||++...    ..++.++.+|.+.+..  ++|+|++.+|++|+.|+.|++|+....
T Consensus       670 ------~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~--v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        670 ------V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF--VGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             ------e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE--EEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence                  2 57889999999999999997321    2368889999988877  789999999999999999999998776


Q ss_pred             eEEEEe-------------cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          454 ELVFED-------------KFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       454 ~~~~~~-------------~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .++..+             ..+...|.+++|+|++.++++++.+
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d  784 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST  784 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC
Confidence            544332             2234569999999998777776655

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=1.6e-24  Score=197.96  Aligned_cols=230  Identities=16%  Similarity=0.180  Sum_probs=181.1

Q ss_pred             EEeccccCcEEEEEEcCCC---CEEEEEeC-CeEEEEECCCCcEE-----EEeeeCCCeEEEEEecCCcEEEEEeCCCeE
Q 037288          250 HLVASFKCTVWTADFCTNP---SQAVIGTN-LGAAMVDMETGMAS-----WVCRSKSDILAQQVIHSGNVVLCGFRNGAI  320 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g---~~l~s~s~-~~i~vwd~~~~~~~-----~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i  320 (513)
                      ..+.||.++|.+++|....   ..+++++. .++++|..+.+...     ...+|+..|-+++..++|..+++|+.|.+|
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l  217 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML  217 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence            3477888999988886432   24676654 55999988776522     112588999999999999999999999999


Q ss_pred             EEEECCCC-----------------------ccccccccccccCcCeEEEeeCC--eEEEeE-------eecccCcccce
Q 037288          321 VTVDVRKR-----------------------QRGCSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPS  368 (513)
Q Consensus       321 ~iwd~~~~-----------------------~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~  368 (513)
                      .+|+....                       ... .+..+.+|..+|.++.|.+  .+++++       ||+..+...  
T Consensus       218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~-P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~--  294 (423)
T KOG0313|consen  218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRT-PLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLK--  294 (423)
T ss_pred             eecccCCCccccccccchhhhhhhhhhhcccccC-ceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccce--
Confidence            99993110                       112 2667899999999999998  777777       888777654  


Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCCcEE
Q 037288          369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLR  446 (513)
Q Consensus       369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg~v~  446 (513)
                      ..+..+....|+ .+++..++|++|+.|..|++||.|..... ..++|.+|.+.|..  +.|+|.. ..|++|+.|++++
T Consensus       295 ~~~~~~ksl~~i-~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss--vkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  295 STLTTNKSLNCI-SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS--VKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             eeeecCcceeEe-ecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh--eecCCCCceEEEEEecCCeEE
Confidence            344455666665 67789999999999999999999965544 77899999999888  8899965 5688999999999


Q ss_pred             EEeCCCCe-EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          447 IWSIRSGE-LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       447 vwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +||+++.+ ++..+..|...|.++.|+.. ..+++++.|-.
T Consensus       372 lWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~  411 (423)
T KOG0313|consen  372 LWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNK  411 (423)
T ss_pred             EEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcce
Confidence            99999988 99999999999999999966 44555555533

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.94  E-value=3.1e-25  Score=201.02  Aligned_cols=193  Identities=17%  Similarity=0.178  Sum_probs=169.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      +.||-..|..+++|+-..|+.+++++. |+.||++..+.++-+. |-+.|.|++.+|.-.+|++|++|.++++||+|+..
T Consensus       189 ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~  268 (460)
T KOG0285|consen  189 LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA  268 (460)
T ss_pred             ecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc
Confidence            678889999999999999999887655 9999999998776554 88899999999999999999999999999999987


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR  409 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~  409 (513)
                      .   +..+.+|..+|..+.+                                  .+-...+++|+.|++|++||++  ..
T Consensus       269 ~---V~~l~GH~~~V~~V~~----------------------------------~~~dpqvit~S~D~tvrlWDl~--ag  309 (460)
T KOG0285|consen  269 S---VHVLSGHTNPVASVMC----------------------------------QPTDPQVITGSHDSTVRLWDLR--AG  309 (460)
T ss_pred             e---EEEecCCCCcceeEEe----------------------------------ecCCCceEEecCCceEEEeeec--cC
Confidence            6   4589999999988544                                  3345678999999999999998  56


Q ss_pred             cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          410 GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +...++..|...+.+  ++.+|....+++++.|. |+-|++..|..+..+..|.+.|++++.+.++.+++.++...-
T Consensus       310 kt~~tlt~hkksvra--l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~  383 (460)
T KOG0285|consen  310 KTMITLTHHKKSVRA--LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSI  383 (460)
T ss_pred             ceeEeeecccceeeE--EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEE
Confidence            678888888877766  88899999999999875 999999999999999999999999999999999988877765

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.8e-24  Score=216.24  Aligned_cols=235  Identities=13%  Similarity=0.062  Sum_probs=196.7

Q ss_pred             CceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288          246 RSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       246 ~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      ...+..+..|.++|..++|+|++.++++|+|+- |+||+..+.+++.++. |-.-|..+.|++.-..|++++.|.+|+||
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW  120 (1202)
T ss_pred             hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence            334566889999999999999999999999886 9999999999876654 77789999999999999999999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccC---cccce----------------------
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKA---NIWPS----------------------  368 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~---~~~~~----------------------  368 (513)
                      +..++..+.   .+.||...|.|..|+|   .+++++       ||...-   ...+.                      
T Consensus       121 Nwqsr~~ia---vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV  197 (1202)
T KOG0292|consen  121 NWQSRKCIA---VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV  197 (1202)
T ss_pred             eccCCceEE---EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence            999998755   9999999999999999   788887       886432   11111                      


Q ss_pred             --eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          369 --HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       369 --~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                        +.+..++....-++|+|.-.+|++|+.|..|++|.+.  ..+  .+-+..||.+.|.+  +-|+|...+|+|.|+|++
T Consensus       198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn--etKaWEvDtcrgH~nnVss--vlfhp~q~lIlSnsEDks  273 (1202)
T KOG0292|consen  198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN--ETKAWEVDTCRGHYNNVSS--VLFHPHQDLILSNSEDKS  273 (1202)
T ss_pred             eeeeecccccccceEEecCCcceEEecCCcceeeEEEec--cccceeehhhhcccCCcce--EEecCccceeEecCCCcc
Confidence              1111223333335788888999999999999999987  444  67788999999988  899999999999999999


Q ss_pred             EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288          445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE  487 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~  487 (513)
                      |+|||+...+.+++++......+.++-+|...+||.....--.
T Consensus       274 irVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  274 IRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             EEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence            9999999999999998888899999999997777766555443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.1e-24  Score=197.89  Aligned_cols=230  Identities=17%  Similarity=0.138  Sum_probs=184.2

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeC--CCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSK--SDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~--~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .++.+|..+|.-+.||||.+++++|+ +..+.+||+.+|.....+.+.  ..+.+++|.|||..+++|+.|+.|..||+.
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            45889999999999999999888775 555999999999988888755  669999999999999999999999999998


Q ss_pred             CCccccccccccccC-cCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          327 KRQRGCSSRAGRRHR-IPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~-~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      ...    +....+.+ ..|.+++..+   .++...       ++.....  ....+....++++. .++.+++++++.-.
T Consensus       343 gn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--dr~lise~~~its~-~iS~d~k~~LvnL~  415 (519)
T KOG0293|consen  343 GNI----LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--DRGLISEEQPITSF-SISKDGKLALVNLQ  415 (519)
T ss_pred             cch----hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--hhccccccCceeEE-EEcCCCcEEEEEcc
Confidence            664    22344433 3477777766   333222       1111110  11134445566665 78999999999999


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      +..|++||+.  +...++.|.||......+.-+|.- +..++++|++|+.|+||+..+|+++.++.+|...|++|+|+|.
T Consensus       416 ~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  416 DQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             cCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence            9999999997  666889999999888887778864 4589999999999999999999999999999999999999998


Q ss_pred             -CceEEeeCCCeeee
Q 037288          475 -RSMGPQIEGKIHEE  488 (513)
Q Consensus       475 -~~~~~t~~~~~~~~  488 (513)
                       ..|||+.+.|-.-.
T Consensus       494 ~p~m~ASasDDgtIR  508 (519)
T KOG0293|consen  494 DPEMFASASDDGTIR  508 (519)
T ss_pred             CHHHhhccCCCCeEE
Confidence             78999988886533

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=5e-23  Score=196.23  Aligned_cols=210  Identities=19%  Similarity=0.249  Sum_probs=173.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .+|.+.+|++....            .+..+..|...|.++.|++++.++++++ ++.+.+||+.+++....+. |...|
T Consensus        71 ~~~~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i  138 (289)
T cd00200          71 SDKTIRLWDLETGE------------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV  138 (289)
T ss_pred             CCCeEEEEEcCccc------------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence            36788888876432            2345678888999999999999999887 7779999999888776666 77789


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC  379 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~  379 (513)
                      .+++|+|++.++++++.|+.|++||++..+..   ..+..|...+.++                                
T Consensus       139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~--------------------------------  183 (289)
T cd00200         139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV---ATLTGHTGEVNSV--------------------------------  183 (289)
T ss_pred             EEEEEcCcCCEEEEEcCCCcEEEEEccccccc---eeEecCccccceE--------------------------------
Confidence            99999999999999988999999999876653   3555665556553                                


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          380 LQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       380 ~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                        .++++++.+++++.|+.|++||++  ....+..+..|...+..  +.|+|++.++++++.||.|++||+.+++++..+
T Consensus       184 --~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~  257 (289)
T cd00200         184 --AFSPDGEKLLSSSSDGTIKLWDLS--TGKCLGTLRGHENGVNS--VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL  257 (289)
T ss_pred             --EECCCcCEEEEecCCCcEEEEECC--CCceecchhhcCCceEE--EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence              456688889999999999999997  45577778788887766  889999989998888999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          460 KFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       460 ~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ..|...+.+++|+|++.++++.+.+
T Consensus       258 ~~~~~~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         258 SGHTNSVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             cccCCcEEEEEECCCCCEEEEecCC
Confidence            8888899999999997777766655

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=2.6e-22  Score=198.01  Aligned_cols=230  Identities=14%  Similarity=0.151  Sum_probs=202.9

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      .-..+.||...|.++++|.+...+++|+++.+++|+..+.++++++... .+.+..|-|.++++++|..+|.+.+||+.+
T Consensus       365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            4466889999999999999999999999999999999999999998765 899999999999999999999999999998


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccC-----------cccceeEeecCCCceEEEEEcCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKA-----------NIWPSHTTFMPSSISCLQSLQLY  386 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~  386 (513)
                      ...   +.+..+|.++|++++..|   .+++++       |+..--           .+....++...+.+.|+ .++||
T Consensus       444 ~~l---~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v-~~Spd  519 (888)
T KOG0306|consen  444 ASL---VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV-SVSPD  519 (888)
T ss_pred             hhh---hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE-EEcCC
Confidence            876   447889999999999999   788887       775321           11233566678888886 88999


Q ss_pred             CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP  466 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v  466 (513)
                      |++|+++-.|.+|++|-++  +.+...++.||.-+|.+  +.++||++.+++||.|..|++|-+.-|.+-.++-+|+..|
T Consensus       520 gk~LaVsLLdnTVkVyflD--tlKFflsLYGHkLPV~s--mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv  595 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLD--TLKFFLSLYGHKLPVLS--MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV  595 (888)
T ss_pred             CcEEEEEeccCeEEEEEec--ceeeeeeecccccceeE--EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence            9999999999999999997  55567788999999877  8889999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCceEEeeCCCee
Q 037288          467 SAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       467 ~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .+|.|.|...+|-|++.|-.
T Consensus       596 m~V~F~P~~~~FFt~gKD~k  615 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCGKDGK  615 (888)
T ss_pred             eEEEEcccceeEEEecCcce
Confidence            99999999888888888766

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.7e-23  Score=178.71  Aligned_cols=261  Identities=11%  Similarity=0.095  Sum_probs=188.0

Q ss_pred             eeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCccc
Q 037288          124 DVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCA  203 (513)
Q Consensus       124 ~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~  203 (513)
                      .+|++++.|..||+|+......   -...-+         -...+...+.++.|+|.+..+...|               
T Consensus        28 ~ilAscg~Dk~vriw~~~~~~s---~~ck~v---------ld~~hkrsVRsvAwsp~g~~La~aS---------------   80 (312)
T KOG0645|consen   28 VILASCGTDKAVRIWSTSSGDS---WTCKTV---------LDDGHKRSVRSVAWSPHGRYLASAS---------------   80 (312)
T ss_pred             eEEEeecCCceEEEEecCCCCc---EEEEEe---------ccccchheeeeeeecCCCcEEEEee---------------
Confidence            4799999999999999853211   111111         1123334488999999865544443               


Q ss_pred             cCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEE
Q 037288          204 TDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMV  282 (513)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vw  282 (513)
                                        -+..+.+|.-.+.          .-.++..+.||...|.|++|+++|.+||+++.+. |-||
T Consensus        81 ------------------FD~t~~Iw~k~~~----------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW  132 (312)
T KOG0645|consen   81 ------------------FDATVVIWKKEDG----------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW  132 (312)
T ss_pred             ------------------ccceEEEeecCCC----------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence                              1222223322211          1125778999999999999999999999998655 9999


Q ss_pred             ECCCCc---EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC-CCccccccccccccCcCeEEEeeCCeEEEeE
Q 037288          283 DMETGM---ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR-KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQ  357 (513)
Q Consensus       283 d~~~~~---~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~  357 (513)
                      .+..+.   +...++ |...|.-+.|+|...+|++++.|.+|++|+-. ...... ++++.+|..-|.+++|        
T Consensus       133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c-~~tl~g~~~TVW~~~F--------  203 (312)
T KOG0645|consen  133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWEC-VQTLDGHENTVWSLAF--------  203 (312)
T ss_pred             EecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeE-EEEecCccceEEEEEe--------
Confidence            987553   455554 88899999999999999999999999999877 555555 6789999888888554        


Q ss_pred             eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288          358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM  437 (513)
Q Consensus       358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~  437 (513)
                                                ++.|..|++++.|++|+||-++  ..-+    ..|...++.  +.|.  ...|+
T Consensus       204 --------------------------~~~G~rl~s~sdD~tv~Iw~~~--~~~~----~~~sr~~Y~--v~W~--~~~Ia  247 (312)
T KOG0645|consen  204 --------------------------DNIGSRLVSCSDDGTVSIWRLY--TDLS----GMHSRALYD--VPWD--NGVIA  247 (312)
T ss_pred             --------------------------cCCCceEEEecCCcceEeeeec--cCcc----hhcccceEe--eeec--ccceE
Confidence                                      5589999999999999999965  1111    126666665  6666  45799


Q ss_pred             EEeCCCcEEEEeCCCC------eEEE-EecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          438 SGGEDCKLRIWSIRSG------ELVF-EDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       438 sg~~Dg~v~vwd~~~~------~~~~-~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      +++.|+.|++|.-...      +++. .-..|+..|++++|+|. ...+++++.|
T Consensus       248 S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD  302 (312)
T KOG0645|consen  248 SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD  302 (312)
T ss_pred             eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence            9999999999976542      1222 23567888999999996 5666666655

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=6.7e-24  Score=200.82  Aligned_cols=202  Identities=12%  Similarity=0.141  Sum_probs=158.0

Q ss_pred             eEEeccccCcEEEEEEcCCCC--EEEEEeCCeEEEEECCCCc-EEEEeee------CCCeEEEEEecCCcEEEEEeCCCe
Q 037288          249 MHLVASFKCTVWTADFCTNPS--QAVIGTNLGAAMVDMETGM-ASWVCRS------KSDILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~--~l~s~s~~~i~vwd~~~~~-~~~~~~~------~~~V~~l~~~~~~~~l~sg~~dg~  319 (513)
                      +...+||...++|.+|+|..+  +|.++.|++++|||+...+ ....+.+      .-.+++++|++||++||+|+.||.
T Consensus       261 m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS  340 (641)
T KOG0772|consen  261 MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS  340 (641)
T ss_pred             hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence            455789999999999999654  4444556779999998654 3333432      235899999999999999999999


Q ss_pred             EEEEECCCCccccccccccccCc--CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRI--PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      |.+||.+.....+.+..-.+|..  .|++                                  +.|+++|++|++-+.|+
T Consensus       341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Its----------------------------------i~FS~dg~~LlSRg~D~  386 (641)
T KOG0772|consen  341 IQIWDKGSRTVRPVMKVKDAHLPGQDITS----------------------------------ISFSYDGNYLLSRGFDD  386 (641)
T ss_pred             eeeeecCCcccccceEeeeccCCCCceeE----------------------------------EEeccccchhhhccCCC
Confidence            99999876544332233344433  4444                                  46788999999999999


Q ss_pred             eEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEecCCCCCeEEEE
Q 037288          398 TVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE------DCKLRIWSIRSGELVFEDKFSNSVPSAVC  470 (513)
Q Consensus       398 ~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~  470 (513)
                      ++++||+|  +.+ ++.+..+-.+......++|||+.++|++|..      -|++.+||..+-+.++.+......|..+.
T Consensus       387 tLKvWDLr--q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~  464 (641)
T KOG0772|consen  387 TLKVWDLR--QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCL  464 (641)
T ss_pred             ceeeeecc--ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEe
Confidence            99999999  444 7888877776666667999999999999865      57899999999999999888888899999


Q ss_pred             EcCC-CceEEeeCCCee
Q 037288          471 WRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       471 ~~p~-~~~~~t~~~~~~  486 (513)
                      |+|. +.++++++.+..
T Consensus       465 WhpkLNQi~~gsgdG~~  481 (641)
T KOG0772|consen  465 WHPKLNQIFAGSGDGTA  481 (641)
T ss_pred             ecchhhheeeecCCCce
Confidence            9999 777777665544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.2e-22  Score=179.59  Aligned_cols=207  Identities=12%  Similarity=0.101  Sum_probs=164.4

Q ss_pred             cCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288          245 RRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       245 ~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      ....+..+.||...|..++.+|-+..+.+++ |++|++||++..++...+.... -..++|.|+|-++|+|.....|++|
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLY  167 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEE
Confidence            4445678999999999999999778777765 6689999999888776665333 2356799999999999888899999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD  403 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd  403 (513)
                      |+|.-...+ ...+.-..                              ........ +.|+|+|++++.++..+.+++.|
T Consensus       168 D~Rs~dkgP-F~tf~i~~------------------------------~~~~ew~~-l~FS~dGK~iLlsT~~s~~~~lD  215 (311)
T KOG1446|consen  168 DLRSFDKGP-FTTFSITD------------------------------NDEAEWTD-LEFSPDGKSILLSTNASFIYLLD  215 (311)
T ss_pred             EecccCCCC-ceeEccCC------------------------------CCccceee-eEEcCCCCEEEEEeCCCcEEEEE
Confidence            999876544 22221110                              00112222 47899999999999999999999


Q ss_pred             cCCCCccceEEecCCCCce-eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-CCCCeEEEEEcCCCceEEee
Q 037288          404 HRLTTRGAVQSYEGHVNSH-TRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-SNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       404 ~~~~~~~~~~~~~~h~~~v-~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~~t~  481 (513)
                      .-  ......++.++.+.- ..+..+|+||++++++|+.||+|.+|++++++.+..+.+ +.+++.++.|+|...|++|+
T Consensus       216 Af--~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa  293 (311)
T KOG1446|consen  216 AF--DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA  293 (311)
T ss_pred             cc--CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence            86  444777888776543 125689999999999999999999999999999999888 68999999999999999999


Q ss_pred             CCCee
Q 037288          482 EGKIH  486 (513)
Q Consensus       482 ~~~~~  486 (513)
                      +..+.
T Consensus       294 ~s~l~  298 (311)
T KOG1446|consen  294 SSNLV  298 (311)
T ss_pred             CceEE
Confidence            88765

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.2e-24  Score=185.51  Aligned_cols=250  Identities=17%  Similarity=0.221  Sum_probs=189.0

Q ss_pred             EEEEcccccccchhheeeeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCC
Q 037288           93 VWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKA  172 (513)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (513)
                      ...|+-.+.+.|.++.+-.           .+++++++.||+++||++.....               ++..-+++..++
T Consensus        54 ~~s~d~~D~LfdV~Wse~~-----------e~~~~~a~GDGSLrl~d~~~~s~---------------Pi~~~kEH~~EV  107 (311)
T KOG0277|consen   54 CQSYDTEDGLFDVAWSENH-----------ENQVIAASGDGSLRLFDLTMPSK---------------PIHKFKEHKREV  107 (311)
T ss_pred             EEeeecccceeEeeecCCC-----------cceEEEEecCceEEEeccCCCCc---------------chhHHHhhhhhe
Confidence            4445555666666666544           57899999999999999644331               122555666778


Q ss_pred             CCCccccCcceeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEe
Q 037288          173 PEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLV  252 (513)
Q Consensus       173 ~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (513)
                      .++-|++......+.+                                ..+|.+.+|+..-+.            .+.++
T Consensus       108 ~Svdwn~~~r~~~lts--------------------------------SWD~TiKLW~~~r~~------------Sv~Tf  143 (311)
T KOG0277|consen  108 YSVDWNTVRRRIFLTS--------------------------------SWDGTIKLWDPNRPN------------SVQTF  143 (311)
T ss_pred             EEeccccccceeEEee--------------------------------ccCCceEeecCCCCc------------ceEee
Confidence            8888876532222111                                357777777665443            35779


Q ss_pred             ccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCC-CcEEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCC
Q 037288          253 ASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMET-GMASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       253 ~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~-~~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      .+|...|+...|+| .++++++++ |+.+++||++. |+.+.+..|...++|+.|+. +.++|++|+.|+.|++||+++.
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            99999999999999 667888774 56699999875 45555556888999999997 5589999999999999999987


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      +. + +..+.+|.-+|+.+.|+|                                 .....|++++.|-+++|||... .
T Consensus       224 r~-p-l~eL~gh~~AVRkvk~Sp---------------------------------h~~~lLaSasYDmT~riw~~~~-~  267 (311)
T KOG0277|consen  224 RT-P-LFELNGHGLAVRKVKFSP---------------------------------HHASLLASASYDMTVRIWDPER-Q  267 (311)
T ss_pred             cc-c-ceeecCCceEEEEEecCc---------------------------------chhhHhhhccccceEEeccccc-c
Confidence            63 3 778899999999988866                                 2356899999999999999852 1


Q ss_pred             ccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~  450 (513)
                      ...+.++..|+..+..  ++|++ ++.++++.+.|+.++||+.
T Consensus       268 ds~~e~~~~HtEFv~g--~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  268 DSAIETVDHHTEFVCG--LDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhhhccceEEec--cccccccCceeeecccccceeeecc
Confidence            2377888889888766  66665 6789999999999999984

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=5.8e-22  Score=188.32  Aligned_cols=296  Identities=14%  Similarity=0.164  Sum_probs=198.8

Q ss_pred             eEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcccc
Q 037288          125 VLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCAT  204 (513)
Q Consensus       125 ~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~  204 (513)
                      -++||+.|+.|.+|+-  +...+..              ...++...++++-++|++..+...+                
T Consensus       162 Ri~T~sdDn~v~ffeG--PPFKFk~--------------s~r~HskFV~~VRysPDG~~Fat~g----------------  209 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEG--PPFKFKS--------------SFREHSKFVNCVRYSPDGSRFATAG----------------  209 (603)
T ss_pred             EEEeccCCCeEEEeeC--CCeeeee--------------cccccccceeeEEECCCCCeEEEec----------------
Confidence            5789999999999884  3323222              2333344477777777744433222                


Q ss_pred             CCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEE
Q 037288          205 DGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVD  283 (513)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd  283 (513)
                                       .+|.+.+|+=.+.+.+..         +..-.+|++.|++++|+||+..++++ +|.+++|||
T Consensus       210 -----------------sDgki~iyDGktge~vg~---------l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  210 -----------------SDGKIYIYDGKTGEKVGE---------LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             -----------------CCccEEEEcCCCccEEEE---------ecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence                             466666666554433311         11134899999999999999998877 566799999


Q ss_pred             CCCCcEEEEe--------------------------------------------eeCCCeEEEEEecCCcEEEEEeCCCe
Q 037288          284 METGMASWVC--------------------------------------------RSKSDILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       284 ~~~~~~~~~~--------------------------------------------~~~~~V~~l~~~~~~~~l~sg~~dg~  319 (513)
                      +.+++++.++                                            .|...|+++..++++..|++|+.||.
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            9876433222                                            26678999999999999999999999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCC--eEEE------------------------------------------
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTN------------------------------------------  355 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s------------------------------------------  355 (513)
                      |.-||...+.... + .-.+|...|.+++-+.  .+++                                          
T Consensus       344 I~~W~~~~g~~~~-~-~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av  421 (603)
T KOG0318|consen  344 INSWDSGSGTSDR-L-AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV  421 (603)
T ss_pred             EEEEecCCccccc-c-ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence            9999997765421 0 0022332222222111  1111                                          


Q ss_pred             ---------------------------------------eE-------eecccCcccce-eEeecCCCceEEEEEcCCCC
Q 037288          356 ---------------------------------------EQ-------WFELKANIWPS-HTTFMPSSISCLQSLQLYDQ  388 (513)
Q Consensus       356 ---------------------------------------~~-------w~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~  388 (513)
                                                             |+       |.+..+.+... ....|...++++ .++|++.
T Consensus       422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v-aySpd~~  500 (603)
T KOG0318|consen  422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV-AYSPDGA  500 (603)
T ss_pred             EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE-EECCCCc
Confidence                                                   11       33333332222 344556667765 8999999


Q ss_pred             EEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCe
Q 037288          389 YFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFSNSVP  466 (513)
Q Consensus       389 ~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~~~~v  466 (513)
                      +||++...+.|.+||..  +.. ....+.-|+..|.+  ++|+|+..++|+|+.|-.|.||++.... .+.....|...|
T Consensus       501 yla~~Da~rkvv~yd~~--s~~~~~~~w~FHtakI~~--~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV  576 (603)
T KOG0318|consen  501 YLAAGDASRKVVLYDVA--SREVKTNRWAFHTAKINC--VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV  576 (603)
T ss_pred             EEEEeccCCcEEEEEcc--cCceecceeeeeeeeEEE--EEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc
Confidence            99999999999999996  333 33344558888877  9999999999999999999999998754 344456777779


Q ss_pred             EEEEEcCCCceEEeeCCCee
Q 037288          467 SAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       467 ~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +.+.|-.+.. +++++.|-.
T Consensus       577 n~v~wlde~t-vvSsG~Da~  595 (603)
T KOG0318|consen  577 NSVAWLDEST-VVSSGQDAN  595 (603)
T ss_pred             eeEEEecCce-EEeccCcce
Confidence            9999997654 455555543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.3e-24  Score=184.04  Aligned_cols=213  Identities=15%  Similarity=0.142  Sum_probs=172.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC-CCEEEEE-eCCeEEEEECCCCcEEEEee-eCCC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN-PSQAVIG-TNLGAAMVDMETGMASWVCR-SKSD  298 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~  298 (513)
                      .+|++.+|++..+..           +++.++.|...|.+++|++. ++.++++ -|++|++|+...+..+.++. |.+-
T Consensus        81 GDGSLrl~d~~~~s~-----------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~  149 (311)
T KOG0277|consen   81 GDGSLRLFDLTMPSK-----------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC  149 (311)
T ss_pred             cCceEEEeccCCCCc-----------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE
Confidence            588999998542222           36678999999999999984 4444444 58899999999888777766 7777


Q ss_pred             eEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288          299 ILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI  377 (513)
Q Consensus       299 V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v  377 (513)
                      |...+|+|. ++++++++.|+++++||++......   .+..|...|.+++|+.                          
T Consensus       150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~---~i~ah~~Eil~cdw~k--------------------------  200 (311)
T KOG0277|consen  150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM---SIEAHNSEILCCDWSK--------------------------  200 (311)
T ss_pred             EEEEecCCCCCCeEEEccCCceEEEEEecCCCcee---EEEeccceeEeecccc--------------------------
Confidence            999999994 5999999999999999999886533   5888888888877743                          


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe-E
Q 037288          378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGE-L  455 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~-~  455 (513)
                             -+.+.|+||+.|+.|+.||+|.. +.++..+.+|.-.|..  +.|||. -..|++++.|-+++|||...+. .
T Consensus       201 -------y~~~vl~Tg~vd~~vr~wDir~~-r~pl~eL~gh~~AVRk--vk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  201 -------YNHNVLATGGVDNLVRGWDIRNL-RTPLFELNGHGLAVRK--VKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             -------cCCcEEEecCCCceEEEEehhhc-cccceeecCCceEEEE--EecCcchhhHhhhccccceEEecccccchhh
Confidence                   36789999999999999999942 2388899999987766  889986 4688999999999999998544 5


Q ss_pred             EEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          456 VFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       456 ~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      +.+...|..-+..+.|++. +..+|+++-|
T Consensus       271 ~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD  300 (311)
T KOG0277|consen  271 IETVDHHTEFVCGLDWSLFDPGQVASTGWD  300 (311)
T ss_pred             hhhhhccceEEeccccccccCceeeecccc
Confidence            5667888888999999998 6788887766

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=4.1e-22  Score=189.87  Aligned_cols=222  Identities=16%  Similarity=0.202  Sum_probs=182.1

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      .+.+|..+|.+++|+|+++++++++ ++.+++||+.+++...... |...+.++.|+++++.|++++.||.|++||+...
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            4678999999999999999999887 6679999999887555544 6677889999999999999999999999999986


Q ss_pred             ccccccccccccCcCeEEEeeCC--e-EEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND--R-VTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~--~-~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      +.   ...+..|...+.++.|++  . ++++.       |+...++.  ...+. +...+.++ .+++++.++++++.|+
T Consensus        84 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~-~~~~~~~~l~~~~~~~  157 (289)
T cd00200          84 EC---VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--LTTLRGHTDWVNSV-AFSPDGTFVASSSQDG  157 (289)
T ss_pred             cc---eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--EEEeccCCCcEEEE-EEcCcCCEEEEEcCCC
Confidence            54   447788999999999998  3 33333       77664442  22333 44456665 6778888888888899


Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      .|++||++  ....+..+..|...+..  +.|+|+++.+++++.|+.|++||+.+++.+..+..|...+.+++|+|++.+
T Consensus       158 ~i~i~d~~--~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  233 (289)
T cd00200         158 TIKLWDLR--TGKCVATLTGHTGEVNS--VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL  233 (289)
T ss_pred             cEEEEEcc--ccccceeEecCccccce--EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence            99999997  45577788888877766  889999999999999999999999999999988788889999999999777


Q ss_pred             EEeeC
Q 037288          478 GPQIE  482 (513)
Q Consensus       478 ~~t~~  482 (513)
                      +++++
T Consensus       234 ~~~~~  238 (289)
T cd00200         234 LASGS  238 (289)
T ss_pred             EEEEc
Confidence            77765

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=2.4e-22  Score=198.10  Aligned_cols=230  Identities=13%  Similarity=0.171  Sum_probs=193.3

Q ss_pred             EeccccCcEEEEEEc-CCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          251 LVASFKCTVWTADFC-TNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s-~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      .+-|..+.|.++.|- |+.+++|.+++.. ++++++.+..+.....|...|.+++...+|-+|++|+.|.++++|.+++.
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~  397 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN  397 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence            367888899999885 5778999888765 99999999988876779999999997678889999999999999998544


Q ss_pred             cc--ccccccccccCcCeEEEeeCC----eEEEeE-------eecccCccccee--------EeecCCCceEEEEEcCCC
Q 037288          329 QR--GCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSH--------TTFMPSSISCLQSLQLYD  387 (513)
Q Consensus       329 ~~--~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~  387 (513)
                      ..  .. +....+|...|.+++++.    .+++++       |++...+.....        ...|...|.|+ +++|+.
T Consensus       398 ~~~~~~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V-aia~nd  475 (775)
T KOG0319|consen  398 CSKSLC-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV-AIAPND  475 (775)
T ss_pred             cchhhh-hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce-EecCCC
Confidence            32  23 567889999999999976    566666       988773322111        12355677775 899999


Q ss_pred             CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS  467 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~  467 (513)
                      .++||||+|.+.+||++.  +.....++.||...+.+  +.|+|..+.++++|.|++|+||.+.+..++.++.+|.+.|.
T Consensus       476 kLiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~--V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl  551 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWC--VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL  551 (775)
T ss_pred             ceEEecccccceeeeccc--CceEEEEeeCCccceEE--EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence            999999999999999997  66688999999999877  99999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCceEEeeCCCee
Q 037288          468 AVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       468 ~v~~~p~~~~~~t~~~~~~  486 (513)
                      .+.|-.++..+++++.|--
T Consensus       552 ra~F~~~~~qliS~~adGl  570 (775)
T KOG0319|consen  552 RASFIRNGKQLISAGADGL  570 (775)
T ss_pred             eeeeeeCCcEEEeccCCCc
Confidence            9999999888888877654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.91  E-value=1.6e-22  Score=184.26  Aligned_cols=231  Identities=13%  Similarity=0.136  Sum_probs=180.1

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      .+..+..|+..|.+++.+|+.+++++|+ |+...+|++.++.....+ .|+..|+++.|+.||.+||+|+.+|.|+||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            4677999999999999999999999985 556899999999855444 48899999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      .++....   .+...-..+.=+.|+|   .+++|+       |.+...  ...+.+..+..-+..-.|.|+|+.++++..
T Consensus       136 stg~~~~---~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  136 STGGEQW---KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             ccCceEE---EeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEec
Confidence            9887644   5555566778888999   555665       555543  223344444433333477888999999999


Q ss_pred             CCeEEEEecCCC--------------------------------------------------------------------
Q 037288          396 DGTVKLYDHRLT--------------------------------------------------------------------  407 (513)
Q Consensus       396 dg~i~lwd~~~~--------------------------------------------------------------------  407 (513)
                      ||+|++||+...                                                                    
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            999999998642                                                                    


Q ss_pred             -------------------------CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC
Q 037288          408 -------------------------TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS  462 (513)
Q Consensus       408 -------------------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~  462 (513)
                                               ....++..-.|...|+.  +.|.+ ..+|++++.||.|+.||.++|+++.++.+|
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~--l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH  367 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK--LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH  367 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCceEE--EEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence                                     00011222235555544  67766 578999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCceEEeeCCCee
Q 037288          463 NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       463 ~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ...|.+++.+|+..+++|.+.|-.
T Consensus       368 ~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  368 QMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             chheeEEEEcCCCcEEEEecCCCe
Confidence            999999999999888888877744

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.3e-23  Score=203.05  Aligned_cols=227  Identities=15%  Similarity=0.098  Sum_probs=195.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      +..|...|.++++||...++.++ -++.|.|||.++...+..+. ..-+|.+..|-+..+.+++|+.|..|+||+..+.+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            55688999999999999987776 67889999999999888887 66789999999999999999999999999999998


Q ss_pred             cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      .   +..+.+|.+.|++++.+|   .+++++       |+-...- ....++. |...|.++...+.|.+.|++++.|++
T Consensus        89 k---V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   89 K---VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             e---eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce-eeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            7   559999999999999999   777777       5544332 2344443 45578888777778899999999999


Q ss_pred             EEEEecCCCCccceEEecCCCCceeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ--SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~--~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      |++|.+.  +..+..+++||...|.+  +++-+  |..+|++|+.|.+|+|||.++..+++++.+|..-|..++|+|.-.
T Consensus       165 VKVWslg--s~~~nfTl~gHekGVN~--Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp  240 (794)
T KOG0276|consen  165 VKVWSLG--SPHPNFTLEGHEKGVNC--VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP  240 (794)
T ss_pred             EEEEEcC--CCCCceeeeccccCcce--EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence            9999997  55699999999999999  55544  557999999999999999999999999999999999999999988


Q ss_pred             eEEeeCCCee
Q 037288          477 MGPQIEGKIH  486 (513)
Q Consensus       477 ~~~t~~~~~~  486 (513)
                      +++|++.|--
T Consensus       241 iiisgsEDGT  250 (794)
T KOG0276|consen  241 IIISGSEDGT  250 (794)
T ss_pred             EEEEecCCcc
Confidence            8888877654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.4e-23  Score=177.91  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=188.6

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ....+..|+++|.++.|+-+|+|.+++ +|.+|++|+...|.++.++. |..+|..++.+.|...+++|+.|..|.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            355688999999999999999998866 66779999999999999988 6667999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEe
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      .+++.   ++.+.+|...|..+.|+.   .+++|+       ||-+.....|.+.+.. .+.|.++..   .++.+++|+
T Consensus        89 ~TGkv---~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIvaGS  162 (307)
T KOG0316|consen   89 NTGKV---DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVAGS  162 (307)
T ss_pred             ccCee---eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEeec
Confidence            99986   569999999999999998   666776       9988888877777654 456666532   578899999


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe--EEEEEc
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP--SAVCWR  472 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v--~~v~~~  472 (513)
                      .||+++.||+|  ......-+-+|.  |++  ++|++|++.+++++.|+++++.|-.+|+++..+++|...-  ..++++
T Consensus       163 ~DGtvRtydiR--~G~l~sDy~g~p--it~--vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~  236 (307)
T KOG0316|consen  163 VDGTVRTYDIR--KGTLSSDYFGHP--ITS--VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN  236 (307)
T ss_pred             cCCcEEEEEee--cceeehhhcCCc--cee--EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence            99999999998  444555555554  667  8999999999999999999999999999999999886543  345666


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      .....+++++.|-.
T Consensus       237 qsdthV~sgSEDG~  250 (307)
T KOG0316|consen  237 QSDTHVFSGSEDGK  250 (307)
T ss_pred             ccceeEEeccCCce
Confidence            66666666555544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.5e-23  Score=190.70  Aligned_cols=230  Identities=13%  Similarity=0.091  Sum_probs=197.4

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .+.+.+|..+|+.+-|+|+-.++++++++ +|++||..++++...++ |.+.|..|+|+..|.+|++++.|-.+++||..
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence            45588899999999999999999988765 59999999999866665 88889999999999999999999999999998


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      +.. .+ ++.+.+|...|.++.|-|   .+++++       |+...+..  ..++..+.....++....||..+++++.|
T Consensus       181 ~~~-~c-~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c--v~t~~~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  181 TFF-RC-IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC--VKTFPGHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             HHH-HH-HHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee--EEeccCchHhEEEEEecCCeeEEEecCCC
Confidence            742 23 668999999999999998   777777       88877663  45666666677777888899999999999


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS---------------ERFVMSGGEDCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~---------------g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~  461 (513)
                      .+|++|-+.  ...+...+.+|.-.|.+  ++|-|.               +.++.+++.|++|++||+.++.++.++.+
T Consensus       257 qtl~vW~~~--t~~~k~~lR~hEh~vEc--i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g  332 (406)
T KOG0295|consen  257 QTLRVWVVA--TKQCKAELREHEHPVEC--IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG  332 (406)
T ss_pred             ceEEEEEec--cchhhhhhhccccceEE--EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence            999999996  55577888999988888  455332               25899999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCceEEeeCCCee
Q 037288          462 SNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       462 ~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |+..|+.++|+|.+.+++++..|--
T Consensus       333 hdnwVr~~af~p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  333 HDNWVRGVAFSPGGKYILSCADDKT  357 (406)
T ss_pred             ccceeeeeEEcCCCeEEEEEecCCc
Confidence            9999999999999999999887754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.91  E-value=1.2e-24  Score=196.48  Aligned_cols=200  Identities=18%  Similarity=0.260  Sum_probs=149.7

Q ss_pred             cccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCC
Q 037288          241 FSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNG  318 (513)
Q Consensus       241 ~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg  318 (513)
                      |......+...+.||++.|.|+.|  +.+.+++|+ |.+|++||.++|+++.++- |...|..+.|+  ..++++++.|.
T Consensus       222 WD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDr  297 (499)
T KOG0281|consen  222 WDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDR  297 (499)
T ss_pred             eccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCc
Confidence            333344456679999999999999  456888885 5669999999999887665 66779999997  57899999999


Q ss_pred             eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          319 AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       319 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      ++.+||+..+..+.-...+.||..+|..++|                                    +.+++++++.|.+
T Consensus       298 siaVWdm~sps~it~rrVLvGHrAaVNvVdf------------------------------------d~kyIVsASgDRT  341 (499)
T KOG0281|consen  298 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF------------------------------------DDKYIVSASGDRT  341 (499)
T ss_pred             eeEEEeccCchHHHHHHHHhhhhhheeeecc------------------------------------ccceEEEecCCce
Confidence            9999999988754424578999999999888                                    4557777777777


Q ss_pred             EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288          399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      |++|++.  ....+.++.+|...+.|  +.  -.|+++++|+.|.+|++||+..|.+++.+.+|+..|.++.|.....+-
T Consensus       342 ikvW~~s--t~efvRtl~gHkRGIAC--lQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVS  415 (499)
T KOG0281|consen  342 IKVWSTS--TCEFVRTLNGHKRGIAC--LQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS  415 (499)
T ss_pred             EEEEecc--ceeeehhhhccccccee--hh--ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeee
Confidence            7777775  34477777777777655  32  347777777777777777777777777777777777777777665444


Q ss_pred             EeeCCCee
Q 037288          479 PQIEGKIH  486 (513)
Q Consensus       479 ~t~~~~~~  486 (513)
                      ..-+++++
T Consensus       416 GaYDGkik  423 (499)
T KOG0281|consen  416 GAYDGKIK  423 (499)
T ss_pred             ccccceEE
Confidence            44444443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=9.8e-23  Score=207.12  Aligned_cols=196  Identities=15%  Similarity=0.167  Sum_probs=165.3

Q ss_pred             Eeccc-cCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCc--EEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          251 LVASF-KCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGM--ASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       251 ~~~~h-~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~--~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      .+.+| ...|.++.|+++|+.++++ .++.+++|+..+.+  ....+ .|...|.+++|+|++.++++|+.|++|++||+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            34444 7899999999999999987 56669999997766  44443 58888999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      ..... . ++++.+|...|++++|                                  +|+++++++|+.|++|++||++
T Consensus       233 ~~~~~-~-~~~l~gH~~~v~~~~f----------------------------------~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  233 KDDGR-N-LKTLKGHSTYVTSVAF----------------------------------SPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             cCCCe-E-EEEecCCCCceEEEEe----------------------------------cCCCCEEEEecCCCcEEEEecc
Confidence            44422 2 6789999999998655                                  5588999999999999999997


Q ss_pred             CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecCCCC--CeEEEEEcCCCceEEee
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFEDKFSNS--VPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~~--~v~~v~~~p~~~~~~t~  481 (513)
                        ...++..+.+|.+.|+.  ++|++++++|++++.|+.|+|||+.+++  ++..+..+..  +++.++|+|++.++++.
T Consensus       277 --~~~~~~~l~~hs~~is~--~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~  352 (456)
T KOG0266|consen  277 --TGECVRKLKGHSDGISG--LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA  352 (456)
T ss_pred             --CCeEEEeeeccCCceEE--EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence              45599999999999988  8999999999999999999999999999  5666665544  49999999998887777


Q ss_pred             CCCee
Q 037288          482 EGKIH  486 (513)
Q Consensus       482 ~~~~~  486 (513)
                      ..|-.
T Consensus       353 ~~d~~  357 (456)
T KOG0266|consen  353 SLDRT  357 (456)
T ss_pred             cCCCe
Confidence            77733

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.91  E-value=4.5e-23  Score=183.27  Aligned_cols=197  Identities=18%  Similarity=0.264  Sum_probs=166.6

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCC-cEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETG-MASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~-~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      +..+.+|++.|+.+.|+|+|.+||+|+ |..|.+|++... +..+.+ .|.++|+.+.|.+|++.|++++.|.+|+.||.
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            455889999999999999999999885 555999996533 233333 48899999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      ++++.   .+.+.+|..-|.+++-.                                 .....++.+++.|+++++||+|
T Consensus       120 ~tG~~---~rk~k~h~~~vNs~~p~---------------------------------rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  120 ETGKR---IRKHKGHTSFVNSLDPS---------------------------------RRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             cccee---eehhccccceeeecCcc---------------------------------ccCCeEEEecCCCceEEEEeec
Confidence            99987   44889998888775421                                 1245677889999999999999


Q ss_pred             CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                        ++.++++++.. -.+  .++.|..++..+.+|+-|+.|++||++.++.++.+.+|..+|+.+..+|++..+.+.+.|-
T Consensus       164 --~k~~~~t~~~k-yql--tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~  238 (338)
T KOG0265|consen  164 --KKEAIKTFENK-YQL--TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN  238 (338)
T ss_pred             --ccchhhccccc-eeE--EEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc
Confidence              77788877532 223  4489999999999999999999999999999999999999999999999999999999887


Q ss_pred             e
Q 037288          486 H  486 (513)
Q Consensus       486 ~  486 (513)
                      .
T Consensus       239 t  239 (338)
T KOG0265|consen  239 T  239 (338)
T ss_pred             e
Confidence            6

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=4.2e-22  Score=173.80  Aligned_cols=244  Identities=15%  Similarity=0.159  Sum_probs=186.9

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      .++.+.+|+++-..-.          .-....+|.+.|-.++|+| +..+++++ +|++|++||++++++.........=
T Consensus        40 ~dktv~v~n~e~~r~~----------~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en  109 (313)
T KOG1407|consen   40 FDKTVSVWNLERDRFR----------KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN  109 (313)
T ss_pred             cCCceEEEEecchhhh----------hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc
Confidence            4556666666633111          1233789999999999998 45566655 6677999999999999888877777


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE----eecccCcccceeEe
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ----WFELKANIWPSHTT  371 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~----w~~~~~~~~~~~~~  371 (513)
                      .-+.|+|+|.+++.|+.|..|...|.++.+...    -......+..+.|+.    .+++.+    -.+.-..+++...+
T Consensus       110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si  185 (313)
T KOG1407|consen  110 INITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI  185 (313)
T ss_pred             eEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence            778999999999999999999999999876432    223344455666654    333322    11222355566666


Q ss_pred             ec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          372 FM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       372 ~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      .. +....| +.|+|+|++||+|+.|-.+.+||+.  +.-+++.+..+.-+|..  ++|+-||++||+|++|-.|-|=++
T Consensus       186 ~AH~snCic-I~f~p~GryfA~GsADAlvSLWD~~--ELiC~R~isRldwpVRT--lSFS~dg~~lASaSEDh~IDIA~v  260 (313)
T KOG1407|consen  186 KAHPSNCIC-IEFDPDGRYFATGSADALVSLWDVD--ELICERCISRLDWPVRT--LSFSHDGRMLASASEDHFIDIAEV  260 (313)
T ss_pred             ccCCcceEE-EEECCCCceEeeccccceeeccChh--HhhhheeeccccCceEE--EEeccCcceeeccCccceEEeEec
Confidence            54 444444 5899999999999999999999996  55589999989888866  899999999999999999999999


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          451 RSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       451 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      .+|..+..+.. .++-..|+|+|...+||-...|-
T Consensus       261 etGd~~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  261 ETGDRVWEIPC-EGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ccCCeEEEeec-cCCceeEEecCCCceeeEEecCC
Confidence            99999999875 77899999999987776655543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=6.6e-22  Score=215.76  Aligned_cols=225  Identities=13%  Similarity=0.069  Sum_probs=182.9

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCC----c----EEEEeeeCCCeEEEEEecC-CcEEEEEeCCCeEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETG----M----ASWVCRSKSDILAQQVIHS-GNVVLCGFRNGAIV  321 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~----~----~~~~~~~~~~V~~l~~~~~-~~~l~sg~~dg~i~  321 (513)
                      +..|...|.+++|+|+|+++|+|+. +.|+|||+.+.    .    ....+.+...|.+++|++. +.+|++++.||+|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            5569999999999999999998864 56999997542    1    2233445677999999974 68999999999999


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEE
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  390 (513)
                      +||+.+++.   +..+.+|...|.+++|+|    .+++++       |+...+..  ...+.....+.++.+.++++.+|
T Consensus       559 lWd~~~~~~---~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~~~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        559 VWDVARSQL---VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKTKANICCVQFPSESGRSL  633 (793)
T ss_pred             EEECCCCeE---EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEecCCCeEEEEEeCCCCCEE
Confidence            999988765   457889999999999986    567776       99877653  33445556777776657789999


Q ss_pred             EEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEEEecCCC
Q 037288          391 LASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS------GELVFEDKFSN  463 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~------~~~~~~~~~~~  463 (513)
                      ++|+.||.|++||++  ... ++..+.+|...|..  +.|. ++.+|++++.|++|++||+..      .+++..+.+|.
T Consensus       634 atgs~dg~I~iwD~~--~~~~~~~~~~~h~~~V~~--v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~  708 (793)
T PLN00181        634 AFGSADHKVYYYDLR--NPKLPLCTMIGHSKTVSY--VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT  708 (793)
T ss_pred             EEEeCCCeEEEEECC--CCCccceEecCCCCCEEE--EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence            999999999999997  433 67788899998877  6675 678999999999999999974      36788889999


Q ss_pred             CCeEEEEEcCCCceEEeeCCCee
Q 037288          464 SVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       464 ~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..+..++|+|++.++++++.|-.
T Consensus       709 ~~i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        709 NVKNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCE
Confidence            99999999999888888876544

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=1.1e-21  Score=199.71  Aligned_cols=217  Identities=14%  Similarity=0.096  Sum_probs=155.1

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEE-EEEe-CCeEEEEECCCCcEEEEeeeCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQA-VIGT-NLGAAMVDMETGMASWVCRSKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l-~s~s-~~~i~vwd~~~~~~~~~~~~~~~  298 (513)
                      ..+|.+.+|++.+......  ..  ...+..+.+|...|.+++|+|++..+ ++++ |+.|+|||+.+++....+.+...
T Consensus        94 S~DgtIrIWDi~t~~~~~~--~i--~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~  169 (568)
T PTZ00420         94 SEDLTIRVWEIPHNDESVK--EI--KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKK  169 (568)
T ss_pred             eCCCeEEEEECCCCCcccc--cc--ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCc
Confidence            3678889998864322100  00  11244578999999999999998754 5654 66799999999987777777788


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCce
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSIS  378 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~  378 (513)
                      |.+++|+|+|.+|++++.|+.|++||++++..   +..+.+|.+.+....+                             
T Consensus       170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s~~v-----------------------------  217 (568)
T PTZ00420        170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNTKNI-----------------------------  217 (568)
T ss_pred             EEEEEECCCCCEEEEEecCCEEEEEECCCCcE---EEEEecccCCceeEEE-----------------------------
Confidence            99999999999999999999999999998875   3467788776544222                             


Q ss_pred             EEEEEcCCCCEEEEEecCC----eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          379 CLQSLQLYDQYFLASSMDG----TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       379 ~~~~~~~~~~~l~s~s~dg----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      .+..+++++.+|++++.|+    .|+|||++.. ..++..+..+...-..+.....++|.++++|+.|+.|++|++..+.
T Consensus       218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~-~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT-TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC-CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            1123567889999988774    7999999831 2355555433222111123334568889999999999999998775


Q ss_pred             EEE--EecCCCCCeEEEEEcCCC
Q 037288          455 LVF--EDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       455 ~~~--~~~~~~~~v~~v~~~p~~  475 (513)
                      ...  .+. +..++.+++|.|..
T Consensus       297 ~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        297 IRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEeecccc-cCCCccceEEcccc
Confidence            322  222 46778999999973

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=1.2e-22  Score=200.24  Aligned_cols=213  Identities=13%  Similarity=0.181  Sum_probs=181.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCC-----CcE-----
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMET-----GMA-----  289 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~-----~~~-----  289 (513)
                      ...|.+.++++.+...            +.++.+|.+.||.++.+||+..+++|+ |.+|++||..-     |..     
T Consensus       431 ~k~Gel~vfdlaS~~l------------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls  498 (888)
T KOG0306|consen  431 TKNGELQVFDLASASL------------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS  498 (888)
T ss_pred             ccCCceEEEEeehhhh------------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence            3578888887764433            345789999999999999999998875 66799998641     211     


Q ss_pred             ---EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccc
Q 037288          290 ---SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIW  366 (513)
Q Consensus       290 ---~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~  366 (513)
                         .+++.-...|.|++++|||.+|+++--|.+|+||-+++.+.   .-.+.||.-||.+++                  
T Consensus       499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF---flsLYGHkLPV~smD------------------  557 (888)
T KOG0306|consen  499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF---FLSLYGHKLPVLSMD------------------  557 (888)
T ss_pred             eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---eeeecccccceeEEe------------------
Confidence               13344567899999999999999999999999999998876   448999999999965                  


Q ss_pred             ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          367 PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       367 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                                      ++|++++++|||.|.+|++|-+.  -..|-+++-+|.+.|.+  +.|-|+...++++|.|+.|+
T Consensus       558 ----------------IS~DSklivTgSADKnVKiWGLd--FGDCHKS~fAHdDSvm~--V~F~P~~~~FFt~gKD~kvK  617 (888)
T KOG0306|consen  558 ----------------ISPDSKLIVTGSADKNVKIWGLD--FGDCHKSFFAHDDSVMS--VQFLPKTHLFFTCGKDGKVK  617 (888)
T ss_pred             ----------------ccCCcCeEEeccCCCceEEeccc--cchhhhhhhcccCceeE--EEEcccceeEEEecCcceEE
Confidence                            45699999999999999999996  33388899999999877  88899999999999999999


Q ss_pred             EEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          447 IWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       447 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      -||-..-+.++.+.+|...|++++.+|++.++++++.|..
T Consensus       618 qWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  618 QWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             eechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence            9999999999999999999999999999999999999755

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=5.3e-23  Score=184.29  Aligned_cols=227  Identities=11%  Similarity=0.114  Sum_probs=193.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +.-|..+|.|+.|+.|...+|+|+. +.|++|.+.+|.+++.+.  |...|+|+.|+.|+..+++++.|.++++.-+.++
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG  338 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG  338 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence            4456789999999999999999975 559999999999988776  8888999999999999999999999999999999


Q ss_pred             ccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeE-eecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHT-TFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      +.   ++.+.+|...|+...|.+   .+++++       |+..+.++..... ....-++.++..++.+...++++...+
T Consensus       339 K~---LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  339 KC---LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             hh---HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence            87   669999999999999998   777776       8888777553322 223457888888888999999999999


Q ss_pred             eEEEEecCCCCccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          398 TVKLYDHRLTTRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      +|.+.++   +.+.+++|.. ....-..++++.+|.|.|+++.++|+.++.|++.+|++-.++..|+..|..++.+|...
T Consensus       416 tv~imn~---qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN  492 (508)
T KOG0275|consen  416 TVYIMNM---QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN  492 (508)
T ss_pred             eEEEEec---cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence            9999998   5778888853 22222345578899999999999999999999999999999999999999999999988


Q ss_pred             eEEeeCCC
Q 037288          477 MGPQIEGK  484 (513)
Q Consensus       477 ~~~t~~~~  484 (513)
                      ++|+-+.|
T Consensus       493 llAsYsED  500 (508)
T KOG0275|consen  493 LLASYSED  500 (508)
T ss_pred             hhhhhccc
Confidence            88776554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.8e-23  Score=200.20  Aligned_cols=198  Identities=12%  Similarity=0.089  Sum_probs=161.4

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCC--cEEEEee-eCCCeEEEEE-ecCCcEEEEEeCCCeEEEEEC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETG--MASWVCR-SKSDILAQQV-IHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~--~~~~~~~-~~~~V~~l~~-~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      .++.|.+.|+++....+++.|++++.+ +|++|+...+  -+..+++ |...|.|++. .++..++++||.|+.|++||+
T Consensus        68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi  147 (735)
T KOG0308|consen   68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI  147 (735)
T ss_pred             hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence            377899999999999999888877655 5999999877  3555555 7888999999 778899999999999999999


Q ss_pred             CCCcc--cc-----cccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          326 RKRQR--GC-----SSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       326 ~~~~~--~~-----~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      ..+..  ..     +...+. ++...|.++                                  +..+.|..|++|+..+
T Consensus       148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSL----------------------------------A~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  148 NTGTATLVASFNNVTVNSLGSGPKDSIYSL----------------------------------AMNQTGTIIVSGGTEK  193 (735)
T ss_pred             cCcchhhhhhccccccccCCCCCccceeee----------------------------------ecCCcceEEEecCccc
Confidence            97732  11     122222 555555553                                  4445778999999999


Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      .+++||.|  ....+..+.||+..|.+  +-.+.||..++++|.||+|++||+...+++.++..|...|+++.-+|+-..
T Consensus       194 ~lr~wDpr--t~~kimkLrGHTdNVr~--ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  194 DLRLWDPR--TCKKIMKLRGHTDNVRV--LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             ceEEeccc--cccceeeeeccccceEE--EEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence            99999999  66688889999999988  778899999999999999999999999999999999989999999998666


Q ss_pred             EEeeCCCee
Q 037288          478 GPQIEGKIH  486 (513)
Q Consensus       478 ~~t~~~~~~  486 (513)
                      +-+++++-.
T Consensus       270 vYsG~rd~~  278 (735)
T KOG0308|consen  270 VYSGGRDGN  278 (735)
T ss_pred             EEecCCCCc
Confidence            666665544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=1.7e-22  Score=180.13  Aligned_cols=205  Identities=15%  Similarity=0.221  Sum_probs=160.3

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCC------------------cEE-EEeeeCCCeEEEEEecCCc
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETG------------------MAS-WVCRSKSDILAQQVIHSGN  309 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~------------------~~~-~~~~~~~~V~~l~~~~~~~  309 (513)
                      ..+..|+.++.+.+|++||.++|+|+-+ .|+|.|++..                  ..+ .++.|..+|.++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            3478899999999999999999999755 5999998721                  122 3345889999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccccee--EeecCCCc
Q 037288          310 VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSH--TTFMPSSI  377 (513)
Q Consensus       310 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~--~~~~~~~v  377 (513)
                      +|++|++|++|++||+....... .........+|.++.|+|   .++.|.       ||+.+-+.....  .-.|.+.|
T Consensus       186 ILiS~srD~tvKlFDfsK~saKr-A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKR-AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHH-HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            99999999999999998765433 222333467899999999   555554       777766644222  12345566


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      ++ +.+++.+++.++|+.||.|++||--  +..|+.++. +|.+. ...+..|..+|++|++.|.|..|++|.+.++.++
T Consensus       265 ~~-V~Ys~t~~lYvTaSkDG~IklwDGV--S~rCv~t~~~AH~gs-evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  265 TQ-VRYSSTGSLYVTASKDGAIKLWDGV--SNRCVRTIGNAHGGS-EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             eE-EEecCCccEEEEeccCCcEEeeccc--cHHHHHHHHhhcCCc-eeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence            66 4889999999999999999999975  566888885 56544 3445889999999999999999999999998877


Q ss_pred             EEe
Q 037288          457 FED  459 (513)
Q Consensus       457 ~~~  459 (513)
                      .++
T Consensus       341 ~~Y  343 (430)
T KOG0640|consen  341 KEY  343 (430)
T ss_pred             EEE
Confidence            654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=5.7e-23  Score=189.79  Aligned_cols=195  Identities=19%  Similarity=0.210  Sum_probs=152.1

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...++.+|++.|.++.|......+++|+. .+|++||+....+....-..+.+..|..+  ...+++|..|++|++||++
T Consensus       253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R  330 (459)
T KOG0288|consen  253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIR  330 (459)
T ss_pred             hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEecc
Confidence            35679999999999999887766778864 56999999998887776666666766665  6789999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ......   ..+                                  ..+.+++ +.+++++..+++++.|.++.++|+| 
T Consensus       331 s~~~~~---sv~----------------------------------~gg~vtS-l~ls~~g~~lLsssRDdtl~viDlR-  371 (459)
T KOG0288|consen  331 SADKTR---SVP----------------------------------LGGRVTS-LDLSMDGLELLSSSRDDTLKVIDLR-  371 (459)
T ss_pred             CCceee---Eee----------------------------------cCcceee-EeeccCCeEEeeecCCCceeeeecc-
Confidence            887533   222                                  2333344 3667799999999999999999998 


Q ss_pred             CCccceEEecCCCC--ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC--eEEEEEcCCCceEEeeC
Q 037288          407 TTRGAVQSYEGHVN--SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV--PSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       407 ~~~~~~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~~t~~  482 (513)
                       .....++|.+...  ......+.|||++.|+++||.||.|+||++.++++...+....+.  |++++|+|.+..+++++
T Consensus       372 -t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  372 -TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             -cccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence             5555555543211  111234889999999999999999999999999999988765554  99999999977777666


Q ss_pred             CC
Q 037288          483 GK  484 (513)
Q Consensus       483 ~~  484 (513)
                      .+
T Consensus       451 k~  452 (459)
T KOG0288|consen  451 KQ  452 (459)
T ss_pred             CC
Confidence            64

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=2.7e-21  Score=196.03  Aligned_cols=216  Identities=11%  Similarity=0.072  Sum_probs=162.6

Q ss_pred             EeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCc-------EEEE-eeeCCCeEEEEEecCC-cEEEEEeCCCe
Q 037288          251 LVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGM-------ASWV-CRSKSDILAQQVIHSG-NVVLCGFRNGA  319 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~-------~~~~-~~~~~~V~~l~~~~~~-~~l~sg~~dg~  319 (513)
                      .+.+|.+.|++++|+| ++.+|++|++ ++|++||+.++.       .+.. ..|...|.+++|+|++ ++|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3789999999999999 8889998865 559999997652       2333 3488889999999986 79999999999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCC
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQ  388 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  388 (513)
                      |++||+.+++.   +..+.+|...|.+++|++   .+++++       ||.+.++..  ..+. |.+.......+.+++.
T Consensus       150 VrIWDl~tg~~---~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v--~tl~~H~~~~~~~~~w~~~~~  224 (493)
T PTZ00421        150 VNVWDVERGKA---VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV--SSVEAHASAKSQRCLWAKRKD  224 (493)
T ss_pred             EEEEECCCCeE---EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE--EEEecCCCCcceEEEEcCCCC
Confidence            99999998765   447889999999999998   566666       998877643  2332 3333333345666777


Q ss_pred             EEEEEe----cCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecC-
Q 037288          389 YFLASS----MDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKF-  461 (513)
Q Consensus       389 ~l~s~s----~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~-  461 (513)
                      .+++++    .|+.|++||++  ... ++.....+.... .....|++++++|++|+ .|+.|++||+.+++++..... 
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr--~~~~p~~~~~~d~~~~-~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~  301 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTR--KMASPYSTVDLDQSSA-LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS  301 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCC--CCCCceeEeccCCCCc-eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence            777654    47899999998  333 455444343322 22357899999999887 599999999999998877544 


Q ss_pred             CCCCeEEEEEcCC
Q 037288          462 SNSVPSAVCWRTQ  474 (513)
Q Consensus       462 ~~~~v~~v~~~p~  474 (513)
                      +..++.+++|.|.
T Consensus       302 s~~~~~g~~~~pk  314 (493)
T PTZ00421        302 SVEPHKGLCMMPK  314 (493)
T ss_pred             CCCCCcceEeccc
Confidence            3456888888886

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.1e-21  Score=196.60  Aligned_cols=242  Identities=10%  Similarity=0.105  Sum_probs=183.0

Q ss_pred             CCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeC
Q 037288          239 PNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFR  316 (513)
Q Consensus       239 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~  316 (513)
                      ++|......++.++.||-+-|..+.|++.-.++.+++|++ |+||+..++.++.++. |..-|+|.+|+|...++++++.
T Consensus        76 kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL  155 (1202)
T KOG0292|consen   76 KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL  155 (1202)
T ss_pred             EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc
Confidence            3444445557788999999999999999999999998876 9999999999988876 6677999999999999999999


Q ss_pred             CCeEEEEECCCCccc---c----------------------c-cccccccCcCeEEEeeCC---eEEEeE-------eec
Q 037288          317 NGAIVTVDVRKRQRG---C----------------------S-SRAGRRHRIPYSRLQRND---RVTNEQ-------WFE  360 (513)
Q Consensus       317 dg~i~iwd~~~~~~~---~----------------------~-~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~  360 (513)
                      |.+|+|||+..-+..   +                      . -..+.||...|.-++|+|   .+++|+       |..
T Consensus       156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm  235 (1202)
T KOG0292|consen  156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM  235 (1202)
T ss_pred             cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence            999999998532210   0                      0 124678999999999999   788887       887


Q ss_pred             ccCcccceeEe-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE
Q 037288          361 LKANIWPSHTT-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG  439 (513)
Q Consensus       361 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg  439 (513)
                      ...+.+..-+. .|...|.++ .|+|..+++++.+.|++|++||+.  ++..+++|....+...+  ++.+|..+++++|
T Consensus       236 netKaWEvDtcrgH~nnVssv-lfhp~q~lIlSnsEDksirVwDm~--kRt~v~tfrrendRFW~--laahP~lNLfAAg  310 (1202)
T KOG0292|consen  236 NETKAWEVDTCRGHYNNVSSV-LFHPHQDLILSNSEDKSIRVWDMT--KRTSVQTFRRENDRFWI--LAAHPELNLFAAG  310 (1202)
T ss_pred             ccccceeehhhhcccCCcceE-EecCccceeEecCCCccEEEEecc--cccceeeeeccCCeEEE--EEecCCcceeeee
Confidence            77766644444 355667775 788899999999999999999997  66699999755555555  8889999866665


Q ss_pred             eCCCcEEEEeCCCCe----------------EE-------------EEecCC---CCCeEEEEEcCC-CceEEeeCCCee
Q 037288          440 GEDCKLRIWSIRSGE----------------LV-------------FEDKFS---NSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       440 ~~Dg~v~vwd~~~~~----------------~~-------------~~~~~~---~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      - |+-+.||-+....                .+             ..++..   ..++.++.|+|. +.++++++.+..
T Consensus       311 H-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~  389 (1202)
T KOG0292|consen  311 H-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG  389 (1202)
T ss_pred             c-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence            4 5555566554111                11             112222   267889999998 778888644433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.6e-21  Score=191.04  Aligned_cols=250  Identities=15%  Similarity=0.208  Sum_probs=177.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC------------CCCEEEEEeCCeEEEEECCCCcE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT------------NPSQAVIGTNLGAAMVDMETGMA  289 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~------------~g~~l~s~s~~~i~vwd~~~~~~  289 (513)
                      .+.++++|++.++..+-+         ......|...||++.--|            .+.++.+.+|++|++||++.+..
T Consensus       344 ndhSlYvWDvrD~~kvgk---------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn  414 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGK---------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN  414 (1080)
T ss_pred             cCceEEEEeccccccccc---------eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence            467899999987766544         344677888888887654            34455556788999999976310


Q ss_pred             EEE--------------------------------------eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          290 SWV--------------------------------------CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       290 ~~~--------------------------------------~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      -.+                                      +.....+.+++.+|+|++||+|..-|+++|||+.+.+..
T Consensus       415 n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~  494 (1080)
T KOG1408|consen  415 NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT  494 (1080)
T ss_pred             cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh
Confidence            000                                      012235899999999999999999999999999766542


Q ss_pred             cccccccccCcCeEEEeeCC------eEEEeE-------eecccC-----------------------------------
Q 037288          332 CSSRAGRRHRIPYSRLQRND------RVTNEQ-------WFELKA-----------------------------------  363 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~------~~~s~~-------w~~~~~-----------------------------------  363 (513)
                      .   .+.+|...|.++.|+.      .+++++       +|+...                                   
T Consensus       495 ~---~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADk  571 (1080)
T KOG1408|consen  495 C---FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK  571 (1080)
T ss_pred             h---heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence            2   5566666666666654      122222       221111                                   


Q ss_pred             -------------cccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc-eeEEEEE
Q 037288          364 -------------NIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS-HTRIQLG  428 (513)
Q Consensus       364 -------------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~  428 (513)
                                   .+.+..+-.. ...+.. +...|..+++++++.|..|+|||+.  ..+..+.|++..+. -..+.+.
T Consensus       572 simFr~~qk~~~g~~f~r~t~t~~ktTlYD-m~Vdp~~k~v~t~cQDrnirif~i~--sgKq~k~FKgs~~~eG~lIKv~  648 (1080)
T KOG1408|consen  572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYD-MAVDPTSKLVVTVCQDRNIRIFDIE--SGKQVKSFKGSRDHEGDLIKVI  648 (1080)
T ss_pred             hhheehhccccCceeccccccccccceEEE-eeeCCCcceEEEEecccceEEEecc--ccceeeeecccccCCCceEEEE
Confidence                         1111110000 111222 3567788899999999999999997  55588888753322 3346688


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          429 VDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       429 ~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .+|.|-||++.+.|.++.++|..+|+++....+|...|+.+.|.++-..+++..+|-+
T Consensus       649 lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  649 LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence            8999999999999999999999999999999999999999999999777777777766

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=5.2e-22  Score=187.32  Aligned_cols=222  Identities=13%  Similarity=0.140  Sum_probs=179.6

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEe-eeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVC-RSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +..+.+.|++++|..||+++|+|.+.+ |+|+|+.+...++.+ .|..+|..+.|+|++ .++++|+.|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            556778999999999999999997655 999997664444444 488999999999966 68889999999999999987


Q ss_pred             ccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      ..   ...+.+|++.|++.+|+|    .+++|+       ||.+... .....+.|..+|..++++ |.|..+++++. .
T Consensus       144 ~v---~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~l-psgs~iasAgG-n  217 (487)
T KOG0310|consen  144 YV---QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLAL-PSGSLIASAGG-N  217 (487)
T ss_pred             EE---EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEc-CCCCEEEEcCC-C
Confidence            63   338999999999999999    578887       8887765 456777888899988665 57888888885 4


Q ss_pred             eEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC-
Q 037288          398 TVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR-  475 (513)
Q Consensus       398 ~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~-  475 (513)
                      .|++||+-  ..+ .+..+..|...|+|  +.+..++..|++||.|+.|++||+.+.+.++.+.. .++|.+++.+|+. 
T Consensus       218 ~vkVWDl~--~G~qll~~~~~H~KtVTc--L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  218 SVKVWDLT--TGGQLLTSMFNHNKTVTC--LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQ  292 (487)
T ss_pred             eEEEEEec--CCceehhhhhcccceEEE--EEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCc
Confidence            89999995  333 44445559999999  66667899999999999999999999999999887 5689999999984 


Q ss_pred             ceEEeeCCC
Q 037288          476 SMGPQIEGK  484 (513)
Q Consensus       476 ~~~~t~~~~  484 (513)
                      .+++.-+.+
T Consensus       293 t~viGmsnG  301 (487)
T KOG0310|consen  293 TVVIGMSNG  301 (487)
T ss_pred             eEEEecccc
Confidence            444444433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.89  E-value=8.9e-22  Score=180.17  Aligned_cols=167  Identities=19%  Similarity=0.200  Sum_probs=144.2

Q ss_pred             CceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          246 RSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       246 ~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      +..+.++.||+.+|.++.|++.+..+.++-|.+|+.||++++..+..+......+|++.+|..++|++|+.|..+++||.
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             cCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence            34688999999999999999855455455677899999999999988888889999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      |++........+.+|...|.++.|+|                                 .+..+|++|+.|+++++||+|
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp---------------------------------~~~~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSP---------------------------------TNEFQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCC---------------------------------CCceEEEEEecCCeEEEEEec
Confidence            99876554568999999999987765                                 467889999999999999999


Q ss_pred             CCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          406 LTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       406 ~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                        ... ++..+.+|.+.|.+  +.|. ++..|++||.|++|+|+.-
T Consensus       377 --S~k~plydI~~h~DKvl~--vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  377 --STKAPLYDIAGHNDKVLS--VDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             --cCCCcceeeccCCceEEE--Eecc-CCceEEeccCcceEEEecc
Confidence              555 99999999988755  7775 4568999999999999864

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=1.1e-20  Score=192.42  Aligned_cols=199  Identities=9%  Similarity=0.103  Sum_probs=146.5

Q ss_pred             eeEEeccccCcEEEEEEcCC-CCEEEEEe-CCeEEEEECCCCc--------EE-EEeeeCCCeEEEEEecCCc-EEEEEe
Q 037288          248 TMHLVASFKCTVWTADFCTN-PSQAVIGT-NLGAAMVDMETGM--------AS-WVCRSKSDILAQQVIHSGN-VVLCGF  315 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~-g~~l~s~s-~~~i~vwd~~~~~--------~~-~~~~~~~~V~~l~~~~~~~-~l~sg~  315 (513)
                      .+..+.+|...|.+++|+|+ +.+|++|+ |++|+|||+.++.        ++ .+..|...|.+++|+|++. +|++|+
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            46678999999999999996 78898886 4569999997642        12 2234788899999999886 567999


Q ss_pred             CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      .|++|++||+++++...   .+. |...|.+                                  +.|+++|.+|++++.
T Consensus       146 ~DgtIrIWDl~tg~~~~---~i~-~~~~V~S----------------------------------lswspdG~lLat~s~  187 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAF---QIN-MPKKLSS----------------------------------LKWNIKGNLLSGTCV  187 (568)
T ss_pred             CCCeEEEEECCCCcEEE---EEe-cCCcEEE----------------------------------EEECCCCCEEEEEec
Confidence            99999999999876422   221 2233433                                  356789999999999


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEE---EEEcCCCCEEEEEeCCC----cEEEEeCCC-CeEEEEecCC--CCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ---LGVDQSERFVMSGGEDC----KLRIWSIRS-GELVFEDKFS--NSV  465 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~---~~~s~~g~~l~sg~~Dg----~v~vwd~~~-~~~~~~~~~~--~~~  465 (513)
                      |+.|+|||++  ....+.++.+|.+.+....   ..|++++++|+++|.|+    .|+|||+++ ++++..+..+  .+.
T Consensus       188 D~~IrIwD~R--sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~  265 (568)
T PTZ00420        188 GKHMHIIDPR--KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP  265 (568)
T ss_pred             CCEEEEEECC--CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc
Confidence            9999999998  5567888999987654322   34568999999988774    799999995 6666665432  233


Q ss_pred             eEEEEEcCCCceEEeeCCCee
Q 037288          466 PSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       466 v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +......+++.+|+++.+|-.
T Consensus       266 L~p~~D~~tg~l~lsGkGD~t  286 (568)
T PTZ00420        266 LIPHYDESTGLIYLIGKGDGN  286 (568)
T ss_pred             eEEeeeCCCCCEEEEEECCCe
Confidence            333344455787877766654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=6e-23  Score=183.94  Aligned_cols=181  Identities=17%  Similarity=0.199  Sum_probs=154.8

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEe---------eeCCCeEEEEEecCCcEEEEEeCCCeEEE
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVC---------RSKSDILAQQVIHSGNVVLCGFRNGAIVT  322 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~---------~~~~~V~~l~~~~~~~~l~sg~~dg~i~i  322 (513)
                      .+....+-|..|+|||++|++|+-++ |-+||..+|+...-+         -+..+|.|+.|+.|..++++|+.||.|++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            35567889999999999999997555 999999998743322         26778999999999999999999999999


Q ss_pred             EECCCCcccccccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288          323 VDVRKRQRGCSSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL  401 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l  401 (513)
                      |.++++.+   ++.+. +|...|+++                                  .|+.++..+++++.|.++++
T Consensus       290 Wri~tG~C---lRrFdrAHtkGvt~l----------------------------------~FSrD~SqiLS~sfD~tvRi  332 (508)
T KOG0275|consen  290 WRIETGQC---LRRFDRAHTKGVTCL----------------------------------SFSRDNSQILSASFDQTVRI  332 (508)
T ss_pred             EEEecchH---HHHhhhhhccCeeEE----------------------------------EEccCcchhhcccccceEEE
Confidence            99999987   45776 788777774                                  45668999999999999999


Q ss_pred             EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC--CCCCeEEEEEcCC
Q 037288          402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF--SNSVPSAVCWRTQ  474 (513)
Q Consensus       402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~  474 (513)
                      --+.  +.++++.|.||...|+.  ..|.+||.++++++.||+|++|+..+.+++.+++.  .+.+|+.+-.-|.
T Consensus       333 HGlK--SGK~LKEfrGHsSyvn~--a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  333 HGLK--SGKCLKEFRGHSSYVNE--ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             eccc--cchhHHHhcCccccccc--eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence            9996  56699999999999887  88999999999999999999999999999998764  3556777776665

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.89  E-value=2e-21  Score=177.04  Aligned_cols=260  Identities=15%  Similarity=0.207  Sum_probs=195.2

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      ..+|+||+.+|.|.+|.+.+....      +.          -..+...+.-..|+|..                     
T Consensus       118 gtlLATGdmsG~v~v~~~stg~~~------~~----------~~~e~~dieWl~WHp~a---------------------  160 (399)
T KOG0296|consen  118 GTLLATGDMSGKVLVFKVSTGGEQ------WK----------LDQEVEDIEWLKWHPRA---------------------  160 (399)
T ss_pred             ceEEEecCCCccEEEEEcccCceE------EE----------eecccCceEEEEecccc---------------------
Confidence            347999999999999999665422      11          11222334455666651                     


Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAM  281 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~v  281 (513)
                              +++    ..+..+|.+++|.+.+..            ....+.||+.++++=.|.|+|+.++++.+ ++|++
T Consensus       161 --------~il----lAG~~DGsvWmw~ip~~~------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~  216 (399)
T KOG0296|consen  161 --------HIL----LAGSTDGSVWMWQIPSQA------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV  216 (399)
T ss_pred             --------cEE----EeecCCCcEEEEECCCcc------------eeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence                    221    234589999999988541            24568899999999999999999999965 55999


Q ss_pred             EECCCCcEEEEeee--CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc-----ccccccCcCeEEEeeCC---
Q 037288          282 VDMETGMASWVCRS--KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS-----RAGRRHRIPYSRLQRND---  351 (513)
Q Consensus       282 wd~~~~~~~~~~~~--~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~v~~~~---  351 (513)
                      ||..+++++..+..  .....++.++..+..++.|..++.+++-...+++.+...     .....+...+.++.+.|   
T Consensus       217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss  296 (399)
T KOG0296|consen  217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS  296 (399)
T ss_pred             EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence            99999998777662  334788999999999999999999988887766643200     11224555566666655   


Q ss_pred             ---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc
Q 037288          352 ---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS  421 (513)
Q Consensus       352 ---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~  421 (513)
                         ..+.|+       ||.....  ..+...|..+|+.+.+..  ..+|++++.||.|+.||.|  ...++.+|.||...
T Consensus       297 ~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaR--tG~l~~~y~GH~~~  370 (399)
T KOG0296|consen  297 KLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDAR--TGQLKFTYTGHQMG  370 (399)
T ss_pred             ccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC--cchheeeccCceEEeeecc--ccceEEEEecCchh
Confidence               233333       8876655  346677888999987765  7889999999999999999  66699999999999


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          422 HTRIQLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       422 v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      |..  ++++|++++++++|.|++.+||++.
T Consensus       371 Il~--f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  371 ILD--FALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeE--EEEcCCCcEEEEecCCCeEEEEecC
Confidence            866  8899999999999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=2e-21  Score=182.05  Aligned_cols=226  Identities=14%  Similarity=0.176  Sum_probs=172.0

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCcE--------E
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGMA--------S  290 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~~--------~  290 (513)
                      ...+.+.+|+.....+......  ....-..+.+|...-++++|++... .|++| .|.+|.+||+.....        .
T Consensus       144 t~~~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~  221 (422)
T KOG0264|consen  144 TSSGDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT  221 (422)
T ss_pred             CCCCCEEEEEeccCCCcccccc--cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence            4566777777665544432211  2233467999999889999998443 44455 555699999975432        2


Q ss_pred             EEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288          291 WVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH  369 (513)
Q Consensus       291 ~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~  369 (513)
                      .+..|.+.|..++|++-. .++++.+.|+.+.|||+|+....+ .....+|..+|.+++|+|                  
T Consensus       222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~-~~~~~ah~~~vn~~~fnp------------------  282 (422)
T KOG0264|consen  222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP-SHSVKAHSAEVNCVAFNP------------------  282 (422)
T ss_pred             EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC-cccccccCCceeEEEeCC------------------
Confidence            333488889999999854 799999999999999999742222 557889999999988876                  


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 037288          370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIW  448 (513)
Q Consensus       370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vw  448 (513)
                                     .++..||+|+.|++|++||+|.. ..++.++.+|...|..  +.|+|+ ...|++++.|+.+.||
T Consensus       283 ---------------~~~~ilAT~S~D~tV~LwDlRnL-~~~lh~~e~H~dev~~--V~WSPh~etvLASSg~D~rl~vW  344 (422)
T KOG0264|consen  283 ---------------FNEFILATGSADKTVALWDLRNL-NKPLHTFEGHEDEVFQ--VEWSPHNETVLASSGTDRRLNVW  344 (422)
T ss_pred             ---------------CCCceEEeccCCCcEEEeechhc-ccCceeccCCCcceEE--EEeCCCCCceeEecccCCcEEEE
Confidence                           35889999999999999999942 2389999999999866  999996 5788999999999999


Q ss_pred             eCCCC--------------eEEEEecCCCCCeEEEEEcCC-CceEEeeCCCe
Q 037288          449 SIRSG--------------ELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKI  485 (513)
Q Consensus       449 d~~~~--------------~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~  485 (513)
                      |+..-              ++++.=.+|.+.|..+.|+|+ ..++++...|-
T Consensus       345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence            99642              245556788899999999999 56677766663

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=8.8e-21  Score=168.90  Aligned_cols=228  Identities=11%  Similarity=0.083  Sum_probs=167.4

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc--EEEEEeCCCeEEEEECCCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN--VVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~--~l~sg~~dg~i~iwd~~~~  328 (513)
                      ...|.++|.+++|+.||..+++| .|+.+++||+.+++...+-.|..+|.++.|-+..+  .|++|+.|.+|+.||.|..
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            45677999999999999988876 67789999999998888778999999999998765  8999999999999999987


Q ss_pred             ccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcc-cceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANI-WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      .... ...|+   +.+.+++.-. .++.+.       +.+..+.. .....-...-.+.|+.+|. +...++.|+-+|.+
T Consensus       148 ~pv~-t~~LP---eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv  222 (347)
T KOG0647|consen  148 NPVA-TLQLP---ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRV  222 (347)
T ss_pred             Ceee-eeecc---ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceE
Confidence            7644 12222   3344544433 222221       44433221 1111222344567776665 56666999999999


Q ss_pred             EEEecCCCCccceEEecCCCC------ceeE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          400 KLYDHRLTTRGAVQSYEGHVN------SHTR-IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~------~v~~-~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      -+..+.......-.+|+.|..      .|+. -.++|+|.-..|+++|.||+..+||-.....+.+...|..+|++++|+
T Consensus       223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence            999887322234556776753      1333 348999998899999999999999999999999988999999999999


Q ss_pred             CCCceEEeeCCC
Q 037288          473 TQRSMGPQIEGK  484 (513)
Q Consensus       473 p~~~~~~t~~~~  484 (513)
                      .++.+||-.-+-
T Consensus       303 ~~G~ifaYA~gY  314 (347)
T KOG0647|consen  303 RNGSIFAYALGY  314 (347)
T ss_pred             CCCCEEEEEeec
Confidence            998877755443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=7.1e-22  Score=176.64  Aligned_cols=254  Identities=15%  Similarity=0.180  Sum_probs=195.5

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +..+.||.+.||.++.......+.+++ |.+.+||.+++|.++..+. |.+.|.+++|++.+.++++++.|++-.||...
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            345889999999999987777777775 5569999999999988876 88889999999999999999999999999721


Q ss_pred             ----CCcc---------------------------------ccccccccccCcCeEEEeeCC---eEEEeE-------ee
Q 037288          327 ----KRQR---------------------------------GCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WF  359 (513)
Q Consensus       327 ----~~~~---------------------------------~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~  359 (513)
                          .++.                                 ...+..+.+|...|.+.+|-.   ++++++       ||
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD  300 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence                0000                                 002556889999999999976   888888       66


Q ss_pred             cccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288          360 ELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSERFVM  437 (513)
Q Consensus       360 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~  437 (513)
                      +.++...  ..+. |....+.+ +-+|..+++++++.|-+.++||+|  .. ..+..|+||...|+.  ..|..+. .++
T Consensus       301 VEtge~v--~~LtGHd~ELtHc-stHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS--~vF~~dd-~vV  372 (481)
T KOG0300|consen  301 VETGEVV--NILTGHDSELTHC-STHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTS--VVFNTDD-RVV  372 (481)
T ss_pred             eccCcee--ccccCcchhcccc-ccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeE--EEEecCC-cee
Confidence            6666543  2222 33334443 567788999999999999999998  43 378899999999988  6776665 489


Q ss_pred             EEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCceE-EeeCCCeeeeeccCCcccceeeeeeccceeeee
Q 037288          438 SGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSMG-PQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMN  511 (513)
Q Consensus       438 sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~-~t~~~~~~~~~~~~~~~~~~~~~gs~~g~~~~~  511 (513)
                      +|+.|.+|+|||+++. .++.++.. +++++.++.+....++ +.-+....+.|++.....-...-.++.|+.||.
T Consensus       373 SgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV  447 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV  447 (481)
T ss_pred             ecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence            9999999999999985 46667665 6789999998886444 333333346677766666677778999999997

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.88  E-value=3.3e-23  Score=187.21  Aligned_cols=188  Identities=14%  Similarity=0.159  Sum_probs=151.3

Q ss_pred             CCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEE----EeeeCCCeEEEEEecCCcEEE
Q 037288          238 GPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASW----VCRSKSDILAQQVIHSGNVVL  312 (513)
Q Consensus       238 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~----~~~~~~~V~~l~~~~~~~~l~  312 (513)
                      +++|.+....++.++.+|...|..+.|+  ..++++++ |.++.+||+.....+.    +.+|...|..++|+  .++|+
T Consensus       259 vrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIV  334 (499)
T KOG0281|consen  259 VRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV  334 (499)
T ss_pred             EEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEE
Confidence            3445555555567789999999999996  34666665 5569999998775332    23488899999996  56999


Q ss_pred             EEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE
Q 037288          313 CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA  392 (513)
Q Consensus       313 sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  392 (513)
                      +++.|.+|++|++.+.+.   ++++.+|...|.|+.+                                    .++++++
T Consensus       335 sASgDRTikvW~~st~ef---vRtl~gHkRGIAClQY------------------------------------r~rlvVS  375 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEF---VRTLNGHKRGIACLQY------------------------------------RDRLVVS  375 (499)
T ss_pred             EecCCceEEEEeccceee---ehhhhcccccceehhc------------------------------------cCeEEEe
Confidence            999999999999999887   5589999888877544                                    6899999


Q ss_pred             EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---------EEEEecCCC
Q 037288          393 SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE---------LVFEDKFSN  463 (513)
Q Consensus       393 ~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~---------~~~~~~~~~  463 (513)
                      |+.|.+|++||+.  ...++..++||..-|.+  +.|+  .+.+++|+.||+|+|||+.++.         ++.++..|.
T Consensus       376 GSSDntIRlwdi~--~G~cLRvLeGHEeLvRc--iRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs  449 (499)
T KOG0281|consen  376 GSSDNTIRLWDIE--CGACLRVLEGHEELVRC--IRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS  449 (499)
T ss_pred             cCCCceEEEEecc--ccHHHHHHhchHHhhhh--eeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence            9999999999996  55599999999999988  5554  7789999999999999998765         334456678


Q ss_pred             CCeEEEEEcCC
Q 037288          464 SVPSAVCWRTQ  474 (513)
Q Consensus       464 ~~v~~v~~~p~  474 (513)
                      +.|..+.|...
T Consensus       450 gRVFrLQFD~f  460 (499)
T KOG0281|consen  450 GRVFRLQFDEF  460 (499)
T ss_pred             ceeEEEeecce
Confidence            88999998755

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=8.7e-21  Score=185.78  Aligned_cols=245  Identities=13%  Similarity=0.148  Sum_probs=190.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeee-CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          259 VWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRS-KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      .+-++|+ ..+.+|+|....|.+|+..+++...+... ...|+++.|+++|.+|++|..+|.|.|||..+.+..   ..+
T Consensus       180 ~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~---~~~  255 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT---RTL  255 (484)
T ss_pred             hhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---ccc
Confidence            3456777 56688888888899999999997766664 677999999999999999999999999999888764   478


Q ss_pred             cc-cCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          338 RR-HRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       338 ~~-h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      .+ |...|.+++|+. .+.+|+       +|++..+.... ...++..-.|-..+++++.+||+|+.|+.+.|||..  .
T Consensus       256 ~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~--~  332 (484)
T KOG0305|consen  256 RGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL--S  332 (484)
T ss_pred             cCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCC--C
Confidence            88 999999999999 555555       77776665444 355455555556899999999999999999999996  6


Q ss_pred             ccceEEecCCCCceeEEEEEEcCC-CCEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGE--DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ..+...+..|.+.|..  ++|+|- ..+||+|+.  |++|++||+.+++.+..+.. .+-|+.+.|++...-+++..+.-
T Consensus       333 ~~p~~~~~~H~aAVKA--~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  333 PEPKFTFTEHTAAVKA--LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             ccccEEEeccceeeeE--eeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCC
Confidence            6689999999999987  888884 568888654  99999999999999998765 56799999999964444444433


Q ss_pred             ee---eeccCCcccceeeeeeccceeeeecC
Q 037288          486 HE---EFDLGQRHSWEAWIGTQEGLFRMNWS  513 (513)
Q Consensus       486 ~~---~~~~~~~~~~~~~~gs~~g~~~~~~~  513 (513)
                      ..   ...+........+.|+...+++|.||
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S  440 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALS  440 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEEC
Confidence            32   11222333334466777777766664

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.88  E-value=1.9e-21  Score=168.60  Aligned_cols=227  Identities=16%  Similarity=0.191  Sum_probs=194.2

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      +-++.+|.++||...++.+....|+++ |-+.++||.-+|..+..+.|+.-|.+++|+.|.+.|++|+.+..++|||++.
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~  131 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR  131 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence            567999999999999999888888775 5568999999999999999999999999999999999999999999999987


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      .+..  ...+.+|.+.|..+-|..   .|++..       ||.+++..  .+.+..+..+.++ .++++|++|.++. .+
T Consensus       132 p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~--v~sL~~~s~VtSl-Evs~dG~ilTia~-gs  205 (334)
T KOG0278|consen  132 PKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE--VQSLEFNSPVTSL-EVSQDGRILTIAY-GS  205 (334)
T ss_pred             CCCC--chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE--EEEEecCCCCcce-eeccCCCEEEEec-Cc
Confidence            7643  568999999999999987   677755       99998875  4566777888886 7788888776654 67


Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCc
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~  476 (513)
                      .|++||..  ..+.++.++... .|..  .+.+|+..++++|++|..++.||..+++.+..+ ++|-++|.+|.|+|++.
T Consensus       206 sV~Fwdak--sf~~lKs~k~P~-nV~S--ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  206 SVKFWDAK--SFGLLKSYKMPC-NVES--ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             eeEEeccc--cccceeeccCcc-cccc--ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence            89999987  556787777443 3444  778899999999999999999999999999886 88999999999999999


Q ss_pred             eEEeeCCCee
Q 037288          477 MGPQIEGKIH  486 (513)
Q Consensus       477 ~~~t~~~~~~  486 (513)
                      ++|+.+.|--
T Consensus       281 ~yAsGSEDGT  290 (334)
T KOG0278|consen  281 LYASGSEDGT  290 (334)
T ss_pred             eeeccCCCce
Confidence            9888877755

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.88  E-value=3e-21  Score=168.98  Aligned_cols=233  Identities=15%  Similarity=0.140  Sum_probs=185.0

Q ss_pred             ceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-----CCeE
Q 037288          247 STMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-----NGAI  320 (513)
Q Consensus       247 ~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-----dg~i  320 (513)
                      +.+-++.||+++|||++..-+.+.+++|+ |.++++||+++|+++.......+|..+.|+++|++++....     .+.|
T Consensus        43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v  122 (327)
T KOG0643|consen   43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFV  122 (327)
T ss_pred             ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence            35778999999999999999999999995 56699999999999999999999999999999998877744     4899


Q ss_pred             EEEECCCCc-----cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcC
Q 037288          321 VTVDVRKRQ-----RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQL  385 (513)
Q Consensus       321 ~iwd~~~~~-----~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~  385 (513)
                      .++|++...     ..+ +..+..+...++..-|.|   .+++|.       ||++.+.......-.|...|..+ .+++
T Consensus       123 ~~fdi~~~~~~~~s~ep-~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~  200 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEP-YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDL-QFSR  200 (327)
T ss_pred             EEEEccCChhhhcccCc-eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccc-cccC
Confidence            999998443     112 556778889999999999   677776       99999876555555566677776 7889


Q ss_pred             CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CC-cEE------------EEeCC
Q 037288          386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DC-KLR------------IWSIR  451 (513)
Q Consensus       386 ~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg-~v~------------vwd~~  451 (513)
                      +..+|++++.|.+-++||.+  ....+++|.. ..++.+  .+++|-..+++.||. +. .|.            +|++-
T Consensus       201 d~T~FiT~s~Dttakl~D~~--tl~v~Kty~t-e~PvN~--aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i  275 (327)
T KOG0643|consen  201 DRTYFITGSKDTTAKLVDVR--TLEVLKTYTT-ERPVNT--AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI  275 (327)
T ss_pred             CcceEEecccCccceeeecc--ceeeEEEeee-cccccc--eecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence            99999999999999999998  5558888873 445666  788897777666553 31 222            23333


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          452 SGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       452 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..+.+...++|-+||++|+|+|++..+++.+.|-.
T Consensus       276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             HHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence            33455667899999999999999998888887755

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.87  E-value=1.6e-20  Score=176.01  Aligned_cols=249  Identities=12%  Similarity=0.143  Sum_probs=176.2

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      .++++|++.+|.+-||+..+........-.+.|+....  ...+    +..+.+|++..                     
T Consensus       137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~----eg~glsWn~~~---------------------  189 (422)
T KOG0264|consen  137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEK----EGYGLSWNRQQ---------------------  189 (422)
T ss_pred             CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecc----ccccccccccc---------------------
Confidence            46888999999999999876543311110222211111  1111    25667886651                     


Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCe-EE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLG-AA  280 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i~  280 (513)
                                 -..+.++..++.+.+|++......-+   .  ......+.+|...|..++|++ +..++++++|++ +.
T Consensus       190 -----------~g~Lls~~~d~~i~lwdi~~~~~~~~---~--~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~  253 (422)
T KOG0264|consen  190 -----------EGTLLSGSDDHTICLWDINAESKEDK---V--VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM  253 (422)
T ss_pred             -----------ceeEeeccCCCcEEEEeccccccCCc---c--ccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence                       12223344566777777765443211   1  113456899999999999999 455777777665 89


Q ss_pred             EEECCCC--cEEEEe-eeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288          281 MVDMETG--MASWVC-RSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       281 vwd~~~~--~~~~~~-~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~  356 (513)
                      |||++++  ++.... .|.++|.|++|+| ++.+||+|+.|++|.+||+|+... + +.++.+|...|..|.|+|     
T Consensus       254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~-lh~~e~H~dev~~V~WSP-----  326 (422)
T KOG0264|consen  254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-P-LHTFEGHEDEVFQVEWSP-----  326 (422)
T ss_pred             EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-C-ceeccCCCcceEEEEeCC-----
Confidence            9999953  333333 3888999999999 458999999999999999998865 3 778999999999988866     


Q ss_pred             EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc---------c---ceEEecCCCCceeE
Q 037288          357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR---------G---AVQSYEGHVNSHTR  424 (513)
Q Consensus       357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~---------~---~~~~~~~h~~~v~~  424 (513)
                                                  .....||+++.|+.+.+||+.....         +   .+..-.||...|..
T Consensus       327 ----------------------------h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D  378 (422)
T KOG0264|consen  327 ----------------------------HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD  378 (422)
T ss_pred             ----------------------------CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence                                        3577899999999999999963211         1   24555789998866


Q ss_pred             EEEEEcCCCCE-EEEEeCCCcEEEEeCC
Q 037288          425 IQLGVDQSERF-VMSGGEDCKLRIWSIR  451 (513)
Q Consensus       425 ~~~~~s~~g~~-l~sg~~Dg~v~vwd~~  451 (513)
                        ++|+|+..+ |+|.+.|+.+.||.+.
T Consensus       379 --fsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  379 --FSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             --ccCCCCCCeEEEEecCCceEEEeecc
Confidence              899998876 5678899999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.87  E-value=4.6e-20  Score=161.66  Aligned_cols=224  Identities=12%  Similarity=0.085  Sum_probs=180.7

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      .++||..+++.+.++.+|.+|.+++.+. ..||-...|+.+-++. |.+.|+|++.+.+...+++|+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            3889999999999999999999887554 8999888888887776 8899999999999999999999999999999999


Q ss_pred             ccccccccccccCcCeEEEeeCC---eEEEeE------------eecccCc-----ccceeEeecCCCceEEEEEcCCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------------WFELKAN-----IWPSHTTFMPSSISCLQSLQLYDQ  388 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------------w~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~  388 (513)
                      +...    .-....+|..++|+.   .++...            ++++...     -.|...+..++.-...+.|.|-++
T Consensus        85 k~la----~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   85 KQLA----TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             cEEE----EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            8643    223456889999988   333332            5555322     123444545444444467899999


Q ss_pred             EEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288          389 YFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS  467 (513)
Q Consensus       389 ~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~  467 (513)
                      +|++|..||.|.+||++  ... .+..-+.|...++.  +.+++|..++++|+.|.+-++||+.+-+++.++.. +.||+
T Consensus       161 ~ii~Ghe~G~is~~da~--~g~~~v~s~~~h~~~Ind--~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN  235 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDAR--TGKELVDSDEEHSSKIND--LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVN  235 (327)
T ss_pred             EEEEecCCCcEEEEEcc--cCceeeechhhhcccccc--ccccCCcceEEecccCccceeeeccceeeEEEeee-ccccc
Confidence            99999999999999998  433 67777889888877  88999999999999999999999999999999876 67899


Q ss_pred             EEEEcCCCceEEeeCC
Q 037288          468 AVCWRTQRSMGPQIEG  483 (513)
Q Consensus       468 ~v~~~p~~~~~~t~~~  483 (513)
                      +.+++|....++-.++
T Consensus       236 ~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGG  251 (327)
T ss_pred             ceecccccceEEecCC
Confidence            9999997544444333

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.87  E-value=2.9e-20  Score=188.75  Aligned_cols=224  Identities=18%  Similarity=0.272  Sum_probs=181.7

Q ss_pred             eEE-eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          249 MHL-VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       249 ~~~-~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      +.. +.+|.+.|+++++..-+.++++|+ |.++++||..+|.+...+. |.+.|.++..  ...++++|+.|.+|++|++
T Consensus       241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEec
Confidence            344 899999999999988788999997 6779999999999999888 7788888875  4577888999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      .++..   +..+.+|..+|.++..+. .+++|+       |+...++......- |...|.++ .+... ..+++|+.|+
T Consensus       319 ~n~~~---l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl-~~~~~-~~~~Sgs~D~  392 (537)
T KOG0274|consen  319 TNGAC---LNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSL-IVDSE-NRLLSGSLDT  392 (537)
T ss_pred             cCcce---EEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEE-EecCc-ceEEeeeecc
Confidence            98876   457777999999999988 778877       88887765533333 67778886 44332 8999999999


Q ss_pred             eEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-CCCCeEEEEEcCCC
Q 037288          398 TVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-SNSVPSAVCWRTQR  475 (513)
Q Consensus       398 ~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~~  475 (513)
                      .|++||++  .. +++.++.+|..-+..  +  ...+++|++++.|++|++||..++++++++.. |.+.|..+++....
T Consensus       393 ~IkvWdl~--~~~~c~~tl~~h~~~v~~--l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~  466 (537)
T KOG0274|consen  393 TIKVWDLR--TKRKCIHTLQGHTSLVSS--L--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEE  466 (537)
T ss_pred             ceEeecCC--chhhhhhhhcCCcccccc--c--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcce
Confidence            99999998  55 699999999987754  3  34588999999999999999999999999988 56789999888333


Q ss_pred             ceEEeeCCCee
Q 037288          476 SMGPQIEGKIH  486 (513)
Q Consensus       476 ~~~~t~~~~~~  486 (513)
                      .+.++..+.+.
T Consensus       467 il~s~~~~~~~  477 (537)
T KOG0274|consen  467 ILCSSDDGSVK  477 (537)
T ss_pred             EEEEecCCeeE
Confidence            33333333333

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=4.1e-20  Score=166.02  Aligned_cols=226  Identities=15%  Similarity=0.147  Sum_probs=170.0

Q ss_pred             cCcEEEEEEc-------CCCCEEEEEeCCe-EEEEECCCCcEEEEee---eCCC---eEEEEEecCCcEEEEEeCCCeEE
Q 037288          256 KCTVWTADFC-------TNPSQAVIGTNLG-AAMVDMETGMASWVCR---SKSD---ILAQQVIHSGNVVLCGFRNGAIV  321 (513)
Q Consensus       256 ~~~V~~~~~s-------~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~---~~~~---V~~l~~~~~~~~l~sg~~dg~i~  321 (513)
                      ...|+...|-       |+..++|+.+.+. |++||..+|+....+.   |...   ..+++|+|||..|++| ....|+
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir  182 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR  182 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence            3578888875       5677888777665 9999999998776654   4443   4799999999999988 678999


Q ss_pred             EEEC-CCCccccccccc-----cccCcCeEEEeeCC----eEEEeEeecccC-----cccceeE-eecCCCceEEEEEcC
Q 037288          322 TVDV-RKRQRGCSSRAG-----RRHRIPYSRLQRND----RVTNEQWFELKA-----NIWPSHT-TFMPSSISCLQSLQL  385 (513)
Q Consensus       322 iwd~-~~~~~~~~~~~~-----~~h~~~v~~v~~~~----~~~s~~w~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~  385 (513)
                      ++|+ |.++... +...     .+..+.|.+++|+|    .+..|+|..+.+     ...|... ..+.+.|+.+ .|.+
T Consensus       183 vFdt~RpGr~c~-vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL-~~~e  260 (406)
T KOG2919|consen  183 VFDTSRPGRDCP-VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL-QWCE  260 (406)
T ss_pred             EeeccCCCCCCc-chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE-Eecc
Confidence            9999 4444322 2222     33478899999999    444555322211     1122233 3456677776 6778


Q ss_pred             CCCEEEEEec-CCeEEEEecCCCCcc-ceEEecCCCC-ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecC
Q 037288          386 YDQYFLASSM-DGTVKLYDHRLTTRG-AVQSYEGHVN-SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELVFEDKF  461 (513)
Q Consensus       386 ~~~~l~s~s~-dg~i~lwd~~~~~~~-~~~~~~~h~~-~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~  461 (513)
                      +|+.|.+|+. |..|..||+|  ... ++..+..|.. .-..+-++..|++++|++|+.||.|++||+++ +..+..+..
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR--~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~  338 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIR--YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN  338 (406)
T ss_pred             CcCeecccccCCCeEEEEeeh--hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence            9999999886 7899999999  444 7777887865 22234477789999999999999999999998 887888888


Q ss_pred             CCCCeEEEEEcCCCceEEeeCCCee
Q 037288          462 SNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       462 ~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +...++.|+++|--.++||+++...
T Consensus       339 ~sd~vNgvslnP~mpilatssGqr~  363 (406)
T KOG2919|consen  339 YSDTVNGVSLNPIMPILATSSGQRI  363 (406)
T ss_pred             ccccccceecCcccceeeeccCcee
Confidence            8889999999999999999988766

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=9.3e-21  Score=177.98  Aligned_cols=231  Identities=16%  Similarity=0.180  Sum_probs=186.5

Q ss_pred             CCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEe
Q 037288          238 GPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGF  315 (513)
Q Consensus       238 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~  315 (513)
                      ..+|++.++..++...--.++|.|++-+|+|.+++.|+ .+.+++|.+.+|..+.++. |-..|+|+.|+-||.+|++|+
T Consensus        63 l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs  142 (476)
T KOG0646|consen   63 LHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS  142 (476)
T ss_pred             ccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC
Confidence            34455554433332333457899999999999999884 5669999999999877665 778899999999999999999


Q ss_pred             CCCeEEEEECC-------CCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCcccceeEeecCCC
Q 037288          316 RNGAIVTVDVR-------KRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIWPSHTTFMPSS  376 (513)
Q Consensus       316 ~dg~i~iwd~~-------~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~~~~~~~~~~~  376 (513)
                      .||.|.+|++-       +....+ +..+..|.-+|+.+...+     ++++.+       |++..+.+.  ..+..+..
T Consensus       143 kDg~V~vW~l~~lv~a~~~~~~~p-~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--lti~fp~s  219 (476)
T KOG0646|consen  143 KDGAVLVWLLTDLVSADNDHSVKP-LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--LTITFPSS  219 (476)
T ss_pred             CCccEEEEEEEeecccccCCCccc-eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--EEEecCCc
Confidence            99999999862       222233 678999999999988766     777777       999988754  44555677


Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEecCCCC--------------ccceEEecCCCC--ceeEEEEEEcCCCCEEEEEe
Q 037288          377 ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT--------------RGAVQSYEGHVN--SHTRIQLGVDQSERFVMSGG  440 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~--------------~~~~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~  440 (513)
                      +.++ .++|.+..+.+|+.+|.|.+.++....              ...+..+.||.+  .|++  ++++-||..|++|+
T Consensus       220 i~av-~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc--Lais~DgtlLlSGd  296 (476)
T KOG0646|consen  220 IKAV-ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC--LAISTDGTLLLSGD  296 (476)
T ss_pred             ceeE-EEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE--EEEecCccEEEeeC
Confidence            7775 889999999999999999998876332              114567889998  7877  77788899999999


Q ss_pred             CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .||.|+|||+.+.++++++....++|+.+.+.|-
T Consensus       297 ~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  297 EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             CCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            9999999999999999998877889999999765

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.2e-19  Score=152.63  Aligned_cols=193  Identities=16%  Similarity=0.179  Sum_probs=152.5

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCC------cEEEEeeeCCCeEEEEEecC----CcEEEEEeC-CCe
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETG------MASWVCRSKSDILAQQVIHS----GNVVLCGFR-NGA  319 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~------~~~~~~~~~~~V~~l~~~~~----~~~l~sg~~-dg~  319 (513)
                      .+-|.+.|+|.+|+|+|.++++|+++. |++..++..      ..+.+--|.+.|..++|-.+    |.+|++++. |..
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            456889999999999999999998765 877654432      23333448889999999754    357777653 666


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      |++-|...++.   +..+.+|.+-|.++                                   ++-++-+|++|+.|.+|
T Consensus       165 iy~tdc~~g~~---~~a~sghtghilal-----------------------------------yswn~~m~~sgsqdkti  206 (350)
T KOG0641|consen  165 IYITDCGRGQG---FHALSGHTGHILAL-----------------------------------YSWNGAMFASGSQDKTI  206 (350)
T ss_pred             EEEeecCCCCc---ceeecCCcccEEEE-----------------------------------EEecCcEEEccCCCceE
Confidence            77767766665   56888888877662                                   34478999999999999


Q ss_pred             EEEecCCCCccceEEecC--CC-----CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          400 KLYDHRLTTRGAVQSYEG--HV-----NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~--h~-----~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      ++||+|  -..++.++..  |.     ..|.  .++++|.|++|++|-.|....+||++.+..++.+-.|.+.|+++.|+
T Consensus       207 rfwdlr--v~~~v~~l~~~~~~~glessava--av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs  282 (350)
T KOG0641|consen  207 RFWDLR--VNSCVNTLDNDFHDGGLESSAVA--AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS  282 (350)
T ss_pred             EEEeee--ccceeeeccCcccCCCcccceeE--EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC
Confidence            999999  4446666531  22     2343  48899999999999999999999999999999999999999999999


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      |...++.|++-|..
T Consensus       283 p~a~yllt~syd~~  296 (350)
T KOG0641|consen  283 PGAHYLLTCSYDMK  296 (350)
T ss_pred             CCceEEEEecccce
Confidence            99988888887766

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.86  E-value=3.5e-20  Score=172.47  Aligned_cols=199  Identities=9%  Similarity=0.192  Sum_probs=163.7

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +..+.||...|+.+.++++...+++++ |..|+||.......... ..|..+|+.+..+|.|.+|++++.|++..+.|++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            566899999999999999999888885 55599999876654443 3489999999999999999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ++.... ...-......+++                                  ..|+|||..|.+|+.||.|++||+. 
T Consensus       334 ~g~~lt-~vs~~~s~v~~ts----------------------------------~~fHpDgLifgtgt~d~~vkiwdlk-  377 (506)
T KOG0289|consen  334 SGSQLT-VVSDETSDVEYTS----------------------------------AAFHPDGLIFGTGTPDGVVKIWDLK-  377 (506)
T ss_pred             CCcEEE-EEeeccccceeEE----------------------------------eeEcCCceEEeccCCCceEEEEEcC-
Confidence            987532 0000001111222                                  4788999999999999999999996 


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCe
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                       +...+..|.+|.++|..  +.|+.+|-||++++.|+.|++||++.-+...++... ...+.+++|.+.+.+++..+.++
T Consensus       378 -s~~~~a~Fpght~~vk~--i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l  454 (506)
T KOG0289|consen  378 -SQTNVAKFPGHTGPVKA--ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL  454 (506)
T ss_pred             -CccccccCCCCCCceeE--EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee
Confidence             44488899999999988  899999999999999999999999998888776543 23699999999999998888887


Q ss_pred             e
Q 037288          486 H  486 (513)
Q Consensus       486 ~  486 (513)
                      .
T Consensus       455 ~  455 (506)
T KOG0289|consen  455 Q  455 (506)
T ss_pred             E
Confidence            6

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.8e-20  Score=160.98  Aligned_cols=216  Identities=11%  Similarity=0.082  Sum_probs=159.9

Q ss_pred             eEEeccccCcEEEEEEcC--CCCEEEEEe-CCeEEEEECCCCcEEEEe---eeCCCeEEEEEecCC--cEEEEEeCCCeE
Q 037288          249 MHLVASFKCTVWTADFCT--NPSQAVIGT-NLGAAMVDMETGMASWVC---RSKSDILAQQVIHSG--NVVLCGFRNGAI  320 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~--~g~~l~s~s-~~~i~vwd~~~~~~~~~~---~~~~~V~~l~~~~~~--~~l~sg~~dg~i  320 (513)
                      +.+|.||.++|+.++|..  -|.+||+++ |+.|.||.-+.++-....   .|.+.|++++|.|.+  -+|++|+.||.|
T Consensus        49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            345899999999999976  899999886 666999999888533322   278889999999864  799999999999


Q ss_pred             EEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      .|.+.+....-.+-+...+|...|+++.|.|..+.|.            .+.+.       .. ..-+.|++|+.|..|+
T Consensus       129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~------------~~~~~-------~~-~~~krlvSgGcDn~Vk  188 (299)
T KOG1332|consen  129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS------------LVDQG-------PA-AKVKRLVSGGCDNLVK  188 (299)
T ss_pred             EEEEEcCCCCccchhhhhccccccceeeecCcCCCcc------------ccccC-------cc-cccceeeccCCcccee
Confidence            9999987732222456789999999999977111110            00000       00 0135799999999999


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC--eE-EEEecCCCCCeEEEEEcC
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE----RFVMSGGEDCKLRIWSIRSG--EL-VFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g----~~l~sg~~Dg~v~vwd~~~~--~~-~~~~~~~~~~v~~v~~~p  473 (513)
                      ||+........-.+|++|.+.|..  ++|.|.-    .+|+++++||+|.||-....  +. ...+..-..++..+.|+.
T Consensus       189 iW~~~~~~w~~e~~l~~H~dwVRD--VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~  266 (299)
T KOG1332|consen  189 IWKFDSDSWKLERTLEGHKDWVRD--VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL  266 (299)
T ss_pred             eeecCCcchhhhhhhhhcchhhhh--hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec
Confidence            999973222355569999999877  8888863    57999999999999976532  11 111233356799999999


Q ss_pred             CCceEEeeCCCee
Q 037288          474 QRSMGPQIEGKIH  486 (513)
Q Consensus       474 ~~~~~~t~~~~~~  486 (513)
                      .+.+|+-+++|..
T Consensus       267 sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  267 SGNILAVSGGDNK  279 (299)
T ss_pred             cccEEEEecCCcE
Confidence            9999999888866

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2e-19  Score=161.14  Aligned_cols=251  Identities=13%  Similarity=0.141  Sum_probs=181.5

Q ss_pred             ceeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEE
Q 037288          182 ASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWT  261 (513)
Q Consensus       182 ~~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  261 (513)
                      ..-.+..+|+++.+++....                 ++..+..+.+|++....            .+..+..|.+.|++
T Consensus        38 ~~~aH~~sitavAVs~~~~a-----------------SGssDetI~IYDm~k~~------------qlg~ll~Hagsita   88 (362)
T KOG0294|consen   38 AFSAHAGSITALAVSGPYVA-----------------SGSSDETIHIYDMRKRK------------QLGILLSHAGSITA   88 (362)
T ss_pred             cccccccceeEEEecceeEe-----------------ccCCCCcEEEEeccchh------------hhcceeccccceEE
Confidence            34456677888888765533                 23445566666665332            24558889999999


Q ss_pred             EEEcCCCC--EEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          262 ADFCTNPS--QAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       262 ~~~s~~g~--~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      +.|.++-.  .|.+|++++ |.+|+...-.++..++ |...|+.++.+|.|++.++.+.|+.++.||+-.++... +..+
T Consensus        89 L~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-v~~L  167 (362)
T KOG0294|consen   89 LKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-VLNL  167 (362)
T ss_pred             EEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce-eecc
Confidence            99998664  677776554 9999999888877776 77889999999999999999999999999998887543 2222


Q ss_pred             cccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          338 RRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       338 ~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      .   ..-+.|.|.|   .++.+.      |......+.  ..+..+..+.|+.+.  ++..|++|..|+.|.+||..  +
T Consensus       168 ~---~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~--~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~d--s  238 (362)
T KOG0294|consen  168 K---NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVF--REIENPKRILCATFL--DGSELLVGGDNEWISLKDTD--S  238 (362)
T ss_pred             C---CcceeeEEcCCCCEEEEEeccEEEEEecccHhHh--hhhhccccceeeeec--CCceEEEecCCceEEEeccC--C
Confidence            2   1223378887   444443      444433322  222333455565443  68899999999999999986  4


Q ss_pred             ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEecCCCCCeEEEEEc
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-----ELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-----~~~~~~~~~~~~v~~v~~~  472 (513)
                      ..+...+.+|.+.|..+..--.|++.+|+++|.||.|+|||++..     +++..+.. +..++|+...
T Consensus       239 ~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  239 DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence            558999999999998865555788999999999999999999876     56666655 4456665543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.5e-20  Score=177.61  Aligned_cols=222  Identities=16%  Similarity=0.184  Sum_probs=181.7

Q ss_pred             cCcEEEEEEcCCC-CEEEEEeCCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc
Q 037288          256 KCTVWTADFCTNP-SQAVIGTNLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS  333 (513)
Q Consensus       256 ~~~V~~~~~s~~g-~~l~s~s~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  333 (513)
                      .+.|..++|+|.. .-+|+.+.-++.||+..+.....++ +.+..|.++.|-.||.++++|...|.|++||+.+...   
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i---  102 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI---  102 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH---
Confidence            3689999999944 4677777778999999887766644 4778899999999999999999999999999655332   


Q ss_pred             cccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288          334 SRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY  402 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw  402 (513)
                      ++.+.+|..++..+.|+|    .+++|+       |++.+... ......|.+.|.|..+.+-+++.+++|+.||.|++|
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            779999999999999999    566666       88887774 334446678889987777778899999999999999


Q ss_pred             ecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          403 DHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       403 d~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      |+|... ..+.++. |..+|..  +.+-|.|..|++++ ...|+|||+.+ ++++.....|.-.|+|+++..++.-|.++
T Consensus       182 DtR~~~-~~v~eln-hg~pVe~--vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~  256 (487)
T KOG0310|consen  182 DTRSLT-SRVVELN-HGCPVES--VLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG  256 (487)
T ss_pred             EeccCC-ceeEEec-CCCceee--EEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec
Confidence            999422 4677776 8888877  77889999999887 45799999995 55555555588889999999999999999


Q ss_pred             CCCee
Q 037288          482 EGKIH  486 (513)
Q Consensus       482 ~~~~~  486 (513)
                      +-|-+
T Consensus       257 sLD~~  261 (487)
T KOG0310|consen  257 SLDRH  261 (487)
T ss_pred             ccccc
Confidence            88877

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.9e-21  Score=190.49  Aligned_cols=188  Identities=13%  Similarity=0.199  Sum_probs=152.4

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCe-EEEEECCC---CcEEEEe-eeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcc
Q 037288          258 TVWTADFCT-NPSQAVIGTNLG-AAMVDMET---GMASWVC-RSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQR  330 (513)
Q Consensus       258 ~V~~~~~s~-~g~~l~s~s~~~-i~vwd~~~---~~~~~~~-~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~  330 (513)
                      .+..+.|+. +.++||+++..+ |.+||+..   .+.+..+ .|...+.+++|++.. ++|++|+.||+|++||+|..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            566788875 567888886555 89999987   3333333 488889999999865 8999999999999999998876


Q ss_pred             ccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc
Q 037288          331 GCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG  410 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~  410 (513)
                      ..   ++.+....|+.|.|+|                                 ..++.|+++...|.+++||+|  ...
T Consensus       169 ~~---t~~~nSESiRDV~fsp---------------------------------~~~~~F~s~~dsG~lqlWDlR--qp~  210 (839)
T KOG0269|consen  169 KS---TFRSNSESIRDVKFSP---------------------------------GYGNKFASIHDSGYLQLWDLR--QPD  210 (839)
T ss_pred             cc---cccccchhhhceeecc---------------------------------CCCceEEEecCCceEEEeecc--Cch
Confidence            43   6677777788777654                                 358899999999999999999  444


Q ss_pred             -ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288          411 -AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       411 -~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                       +...+.+|.++|.+  +.|+|++.|||+||.|+.|+|||+.+++  .+.++. ...+|..|.|-|. ...||++..-..
T Consensus       211 r~~~k~~AH~GpV~c--~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~d  287 (839)
T KOG0269|consen  211 RCEKKLTAHNGPVLC--LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVD  287 (839)
T ss_pred             hHHHHhhcccCceEE--EeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhcccc
Confidence             88889999999877  9999999999999999999999998654  344443 3678999999999 567888776655

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.1e-19  Score=180.40  Aligned_cols=258  Identities=12%  Similarity=0.186  Sum_probs=183.0

Q ss_pred             eeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceee-ecccce
Q 037288          113 NVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASIL-MPSSVS  191 (513)
Q Consensus       113 ~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~-~~s~i~  191 (513)
                      -..+|+|.    .|.+.+.||.|++|+.......                                |.  .+. ....|.
T Consensus        19 i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~--------------------------------P~--ti~~~g~~v~   60 (933)
T KOG1274|consen   19 ICYDPDGE----FICTCGSDGDIRKWKTNSDEEE--------------------------------PE--TIDISGELVS   60 (933)
T ss_pred             EEEcCCCC----EEEEecCCCceEEeecCCcccC--------------------------------Cc--hhhccCceeE
Confidence            34677776    5889999999999997433200                                00  111 233444


Q ss_pred             EEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEE
Q 037288          192 CIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQA  271 (513)
Q Consensus       192 si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l  271 (513)
                      +|.....+                 +..+..++.+.+|...++...            ..+...+-++.+++++.+|.++
T Consensus        61 ~ia~~s~~-----------------f~~~s~~~tv~~y~fps~~~~------------~iL~Rftlp~r~~~v~g~g~~i  111 (933)
T KOG1274|consen   61 SIACYSNH-----------------FLTGSEQNTVLRYKFPSGEED------------TILARFTLPIRDLAVSGSGKMI  111 (933)
T ss_pred             EEeecccc-----------------eEEeeccceEEEeeCCCCCcc------------ceeeeeeccceEEEEecCCcEE
Confidence            44443332                 122334666666666544332            2255667899999999999999


Q ss_pred             EEEeCCe-EEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEee
Q 037288          272 VIGTNLG-AAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR  349 (513)
Q Consensus       272 ~s~s~~~-i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  349 (513)
                      |.|+++. |++.++.+......+ .|+++|.++.|+|.+++||+.+.||+|++||+.++....++..+....+       
T Consensus       112 aagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-------  184 (933)
T KOG1274|consen  112 AAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-------  184 (933)
T ss_pred             EeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-------
Confidence            9999887 999998887655554 4899999999999999999999999999999998865431111111111       


Q ss_pred             CCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC--CCCceeEEEE
Q 037288          350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG--HVNSHTRIQL  427 (513)
Q Consensus       350 ~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~  427 (513)
                                            .....+++..+|+|++..|+....|+.|++|+..  .......+..  +...+  ..+
T Consensus       185 ----------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~--~we~~f~Lr~~~~ss~~--~~~  238 (933)
T KOG1274|consen  185 ----------------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK--GWELQFKLRDKLSSSKF--SDL  238 (933)
T ss_pred             ----------------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccC--Cceeheeecccccccce--EEE
Confidence                                  1124566778999998888888999999999986  4445555543  33334  448


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          428 GVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       428 ~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .|+|+|+|||+++.||.|.|||+.+.+.    ......|++++|.|+
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPN  281 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCC
Confidence            9999999999999999999999998332    223456999999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.6e-20  Score=186.23  Aligned_cols=197  Identities=15%  Similarity=0.187  Sum_probs=154.8

Q ss_pred             EeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCcEEEEeeeCC-CeEEEEEec-CCcEEEEEeCCCeEEEEECC
Q 037288          251 LVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGMASWVCRSKS-DILAQQVIH-SGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~-~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .+..|+..|++++|++ ...+|++|+. ++|++||++......++...+ .|..|+|+| .++.++++...|.+++||+|
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            3788999999999998 4557778865 559999999888766666554 499999998 56899999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      .... + ...+.+|.++|.++.|                                  +|++.+||||+.|+.|+|||+..
T Consensus       208 qp~r-~-~~k~~AH~GpV~c~nw----------------------------------hPnr~~lATGGRDK~vkiWd~t~  251 (839)
T KOG0269|consen  208 QPDR-C-EKKLTAHNGPVLCLNW----------------------------------HPNREWLATGGRDKMVKIWDMTD  251 (839)
T ss_pred             Cchh-H-HHHhhcccCceEEEee----------------------------------cCCCceeeecCCCccEEEEeccC
Confidence            8864 2 5689999999999666                                  45999999999999999999963


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCE-EEEEeC--CCcEEEEeCCCCe-EEEEecCCCCCeEEEEEcCC-CceEEee
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERF-VMSGGE--DCKLRIWSIRSGE-LVFEDKFSNSVPSAVCWRTQ-RSMGPQI  481 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~-l~sg~~--Dg~v~vwd~~~~~-~~~~~~~~~~~v~~v~~~p~-~~~~~t~  481 (513)
                      ...+++.++. -..++..  +.|-|+..+ |++++.  |-.|+|||++-.- +..++..|...++.++|... ...+-++
T Consensus       252 ~~~~~~~tIn-Tiapv~r--VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~  328 (839)
T KOG0269|consen  252 SRAKPKHTIN-TIAPVGR--VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC  328 (839)
T ss_pred             CCccceeEEe-ecceeee--eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence            3333555554 2344555  888887654 555553  7889999998764 55668889999999999875 6677777


Q ss_pred             CCCee
Q 037288          482 EGKIH  486 (513)
Q Consensus       482 ~~~~~  486 (513)
                      +.|--
T Consensus       329 sKD~t  333 (839)
T KOG0269|consen  329 SKDGT  333 (839)
T ss_pred             cCccH
Confidence            76644

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.2e-20  Score=186.50  Aligned_cols=197  Identities=12%  Similarity=0.132  Sum_probs=149.1

Q ss_pred             eeEEec-cccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCC--------------------------------C------
Q 037288          248 TMHLVA-SFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMET--------------------------------G------  287 (513)
Q Consensus       248 ~~~~~~-~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~--------------------------------~------  287 (513)
                      ..+.+. +|.++||++.|++||+|||+|+.++ |+||.+..                                .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            345566 8999999999999999999998776 89997654                                0      


Q ss_pred             ----------------------cEEE-EeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCe
Q 037288          288 ----------------------MASW-VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPY  344 (513)
Q Consensus       288 ----------------------~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  344 (513)
                                            +++. +.+|.++|+.|.|+. .++|++++.|.+|++|++.......            
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~------------  404 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLK------------  404 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceee------------
Confidence                                  0000 113778899999985 4688899999999999998776432            


Q ss_pred             EEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeE
Q 037288          345 SRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR  424 (513)
Q Consensus       345 ~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~  424 (513)
                                               ++.|.+.|+|+.+.+-|.+||++|+.||.|+||++-   ...+.-+..-..-|+.
T Consensus       405 -------------------------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~---d~~Vv~W~Dl~~lITA  456 (712)
T KOG0283|consen  405 -------------------------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS---DKKVVDWNDLRDLITA  456 (712)
T ss_pred             -------------------------EEecCCeeEEEEecccCCCcEeecccccceEEeecC---cCeeEeehhhhhhhee
Confidence                                     444555555554455689999999999999999995   4434444444466776


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--CC------CCCeEEEEEcCCC--ceEEeeCCCeee
Q 037288          425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK--FS------NSVPSAVCWRTQR--SMGPQIEGKIHE  487 (513)
Q Consensus       425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~--~~------~~~v~~v~~~p~~--~~~~t~~~~~~~  487 (513)
                        ++|.|||++.+.|+.+|.+++|++...++.....  .+      ...|+++.|.|..  .+|+|+...-.+
T Consensus       457 --vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR  527 (712)
T KOG0283|consen  457 --VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR  527 (712)
T ss_pred             --EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence              8999999999999999999999999888776632  11      2379999999883  377776655443

>PTZ00421 coronin; Provisional

Probab=99.85  E-value=2.1e-19  Score=182.28  Aligned_cols=188  Identities=13%  Similarity=0.085  Sum_probs=140.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEE--------------EEeeeCCCeEEEEEec-CCcEEEEEeCCCeE
Q 037288          257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMAS--------------WVCRSKSDILAQQVIH-SGNVVLCGFRNGAI  320 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~--------------~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i  320 (513)
                      ..|.....++++..+++++++. +..|+...+..+              .+..|.+.|++++|+| ++++|++|+.|++|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            3455555555654444444333 345554333211              2345888999999999 88999999999999


Q ss_pred             EEEECCCCccc----cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-CCEEEEEec
Q 037288          321 VTVDVRKRQRG----CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-DQYFLASSM  395 (513)
Q Consensus       321 ~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~  395 (513)
                      ++||+......    ..+..+.+|...|.+++|                                  +|+ +++|++|+.
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f----------------------------------~P~~~~iLaSgs~  146 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF----------------------------------HPSAMNVLASAGA  146 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEe----------------------------------CcCCCCEEEEEeC
Confidence            99999765321    114467778887777655                                  444 478999999


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQ  474 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~  474 (513)
                      |+.|+|||+.  ....+..+.+|...|..  ++|+|+|.+|++|+.|++|+|||+++++.+..+..|.+. +..+.|.++
T Consensus       147 DgtVrIWDl~--tg~~~~~l~~h~~~V~s--la~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        147 DMVVNVWDVE--RGKAVEVIKCHSDQITS--LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             CCEEEEEECC--CCeEEEEEcCCCCceEE--EEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence            9999999997  45578889999998877  899999999999999999999999999999998887654 457889988


Q ss_pred             CceEEeeC
Q 037288          475 RSMGPQIE  482 (513)
Q Consensus       475 ~~~~~t~~  482 (513)
                      ...+++.+
T Consensus       223 ~~~ivt~G  230 (493)
T PTZ00421        223 KDLIITLG  230 (493)
T ss_pred             CCeEEEEe
Confidence            65555543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=3e-20  Score=170.10  Aligned_cols=226  Identities=16%  Similarity=0.230  Sum_probs=163.9

Q ss_pred             CCCccEEEEecCCCCCCCCC----cccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCc----EE
Q 037288          221 TTGGSIYALNLDNPLDIGPN----FSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGM----AS  290 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~----~~  290 (513)
                      ...|.+.+|++......+..    .+-.....++++.+|...=++++|||-.. .|++| .-..|++|...+|.    ..
T Consensus       172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~  251 (440)
T KOG0302|consen  172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR  251 (440)
T ss_pred             cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence            35678888776544322211    11133446899999999999999999322 24444 34569999988875    33


Q ss_pred             EEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288          291 WVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH  369 (513)
Q Consensus       291 ~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~  369 (513)
                      .+..|...|-.++|+|.. .+|++|+.||+|+|||+|.+.... .....+|...|..|.|+.                  
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~-~~~~kAh~sDVNVISWnr------------------  312 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA-AVSTKAHNSDVNVISWNR------------------  312 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc-eeEeeccCCceeeEEccC------------------
Confidence            445588899999999976 799999999999999999986554 333477888887766643                  


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEE
Q 037288          370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRI  447 (513)
Q Consensus       370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~v  447 (513)
                                      ...+||+|+.||+++|||+|..+.+ ++.+|+-|..+|++  +.|+|. ...|+++|.|..|.+
T Consensus       313 ----------------~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts--ieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  313 ----------------REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS--IEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             ----------------CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE--EEeccccCceEEeccCCCcEEE
Confidence                            4558999999999999999965555 89999999999988  889985 467889999999999


Q ss_pred             EeCCCCe-------------------EEEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          448 WSIRSGE-------------------LVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       448 wd~~~~~-------------------~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      ||+.-..                   +++.-. ....+..+.|+++ .-++++...+
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~d  430 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAID  430 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEeccc
Confidence            9985321                   222211 1334777889888 4444444444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=1.8e-19  Score=157.46  Aligned_cols=226  Identities=9%  Similarity=0.039  Sum_probs=174.0

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE---eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEEC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV---CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~---~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~  325 (513)
                      .+++|...|.+++|+.+|..|++|+ |+++.+|+++..+....   ..|.+.|-.++|+|.. .++++++.|.+|++||+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            3788999999999999999999985 55699999987753332   2377789999999854 79999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      +..++..   ......+. ..+.|+|   .++.+.       .|.++.+..  ......-.+..+.+ ..++++|.....
T Consensus        95 r~~k~~~---~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~--~~~~~~~e~ne~~w-~~~nd~Fflt~G  167 (313)
T KOG1407|consen   95 RSGKCTA---RIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIV--NEEQFKFEVNEISW-NNSNDLFFLTNG  167 (313)
T ss_pred             ccCcEEE---EeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEeccccee--ehhcccceeeeeee-cCCCCEEEEecC
Confidence            9998754   32222222 3455666   444443       344443322  12222333444434 456677776677


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                      .|+|.|....  ..++++++++|...  |+++.|+|+|+++|+|+.|..+.+||+..--+++.+..++-+|+.+.|+-++
T Consensus       168 lG~v~ILsyp--sLkpv~si~AH~sn--CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg  243 (313)
T KOG1407|consen  168 LGCVEILSYP--SLKPVQSIKAHPSN--CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG  243 (313)
T ss_pred             CceEEEEecc--ccccccccccCCcc--eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence            8999999876  66799999999954  6779999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeCCCeee
Q 037288          476 SMGPQIEGKIHE  487 (513)
Q Consensus       476 ~~~~t~~~~~~~  487 (513)
                      .|+|+.+.|..-
T Consensus       244 ~~lASaSEDh~I  255 (313)
T KOG1407|consen  244 RMLASASEDHFI  255 (313)
T ss_pred             ceeeccCccceE
Confidence            999999988663

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.6e-21  Score=189.26  Aligned_cols=226  Identities=15%  Similarity=0.148  Sum_probs=191.8

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      ...|...|.++..-..++.+++|+++. +-+|.+.....+.. ..|.++|-++.|+++..+|++|+.+|+|++||+...+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            567888999999877888999998776 66998876655444 5699999999999999999999999999999999887


Q ss_pred             cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      .   +++|.+|...+.+++|+|   .++.|+       ||.+...  +.+....+..+..+..|+|+|.+++.++.|..+
T Consensus       104 ~---vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv  178 (825)
T KOG0267|consen  104 I---VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV  178 (825)
T ss_pred             h---hhhhhccccCcceeeeccceEEeccccccccceehhhhccC--ceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence            6   669999999999999999   343444       7776544  344555466677777999999999999999999


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                      +|||+.  ....+..|..|...+..  +.|+|.+-++++||.|++|++||+++-+.+...+.....|.+++|+|++..+.
T Consensus       179 ki~d~~--agk~~~ef~~~e~~v~s--le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  179 KIWDLT--AGKLSKEFKSHEGKVQS--LEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             eeeccc--ccccccccccccccccc--cccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence            999997  56688999999999877  77999999999999999999999999999988877778899999999988888


Q ss_pred             eeCCCee
Q 037288          480 QIEGKIH  486 (513)
Q Consensus       480 t~~~~~~  486 (513)
                      ++...-.
T Consensus       255 ~G~q~sl  261 (825)
T KOG0267|consen  255 SGEQISL  261 (825)
T ss_pred             cCchhhh
Confidence            7766544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=7.5e-19  Score=164.96  Aligned_cols=218  Identities=13%  Similarity=0.143  Sum_probs=170.1

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcc
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQR  330 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~  330 (513)
                      .+|...+.+++.++||++||+|.-+. |.||+.++.+.+..+. |.+.|.+++|-...+.+++++.|..|++|++.....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            48999999999999999999997655 8899999999877755 888899999988778999999999999999988765


Q ss_pred             ccccccccccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          331 GCSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                         +.++.+|.+.|.+|+-..  +.++.+        |.+.....  .....+.+.+.|+..+  +...|++|++||.|.
T Consensus       279 ---vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~I--n~~HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  279 ---VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIA  351 (479)
T ss_pred             ---HHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEe--cccceeeccCCceEE
Confidence               559999999999998876  444433        87743221  1111234467777665  467899999999999


Q ss_pred             EEecCCCCccceEEec-CCC-----------CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecCCCC
Q 037288          401 LYDHRLTTRGAVQSYE-GHV-----------NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG----ELVFEDKFSNS  464 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~-~h~-----------~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~----~~~~~~~~~~~  464 (513)
                      +|++-  +..++.+.. +|.           ..++.  ++..|...++++|+.+|.|++|-+.++    +++..+.. .+
T Consensus       352 LWs~~--KKkplf~~~~AHgv~~~~~~~~~~~Wits--la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~G  426 (479)
T KOG0299|consen  352 LWSLL--KKKPLFTSRLAHGVIPELDPVNGNFWITS--LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VG  426 (479)
T ss_pred             Eeeec--ccCceeEeeccccccCCccccccccceee--eEecccCceEEecCCCCceEEEEecCCccccceeeeccc-cc
Confidence            99996  455666553 231           13444  777899999999999999999999887    56666663 66


Q ss_pred             CeEEEEEcCCCc-eEEeeC
Q 037288          465 VPSAVCWRTQRS-MGPQIE  482 (513)
Q Consensus       465 ~v~~v~~~p~~~-~~~t~~  482 (513)
                      .|++++|++++. ++|+.+
T Consensus       427 fVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  427 FVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EEEEEEEccCCCEEEEecc
Confidence            799999999976 455433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.84  E-value=1.7e-19  Score=185.72  Aligned_cols=248  Identities=12%  Similarity=0.137  Sum_probs=179.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCC----------C---
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMET----------G---  287 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~----------~---  287 (513)
                      .+|.+.+|+...-......+...-...+.....|.+.|.|+.|++||++||+|+|+. |.||....          |   
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~  114 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK  114 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence            455555777664332222233322234566889999999999999999999999988 78998762          1   


Q ss_pred             -----cEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEe-E-
Q 037288          288 -----MASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNE-Q-  357 (513)
Q Consensus       288 -----~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~-~-  357 (513)
                           ++..++ .|.++|..++|+|++.+|++++.|++|.+||.++.+.   ++.+.+|.+.|..+.|.|  ++++. + 
T Consensus       115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~---~~vl~~H~s~VKGvs~DP~Gky~ASqsd  191 (942)
T KOG0973|consen  115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL---LKVLRGHQSLVKGVSWDPIGKYFASQSD  191 (942)
T ss_pred             ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee---eeeeecccccccceEECCccCeeeeecC
Confidence                 133333 4889999999999999999999999999999999865   669999999999999999  44443 3 


Q ss_pred             ------eecccCcccceeEeecC------CCceEEEEEcCCCCEEEEEec----CCeEEEEecCCCCccceEEecCCCCc
Q 037288          358 ------WFELKANIWPSHTTFMP------SSISCLQSLQLYDQYFLASSM----DGTVKLYDHRLTTRGAVQSYEGHVNS  421 (513)
Q Consensus       358 ------w~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~s~----dg~i~lwd~~~~~~~~~~~~~~h~~~  421 (513)
                            |....-.+  .+.+..+      ..-..-..|+|||++|++...    -.++.|.+-.  ....-..|-||..+
T Consensus       192 Drtikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~--tWk~~~~LvGH~~p  267 (942)
T KOG0973|consen  192 DRTLKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG--TWKVDKDLVGHSAP  267 (942)
T ss_pred             CceEEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC--CceeeeeeecCCCc
Confidence                  66333111  1111110      111122478999999998643    3457777754  44467788999999


Q ss_pred             eeEEEEEEcCC-----CC------------EEEEEeCCCcEEEEeCCCCeEEEEec-CCCCCeEEEEEcCCCceE
Q 037288          422 HTRIQLGVDQS-----ER------------FVMSGGEDCKLRIWSIRSGELVFEDK-FSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       422 v~~~~~~~s~~-----g~------------~l~sg~~Dg~v~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~  478 (513)
                      +++  +.|+|.     .+            .+|+|+.|++|-||.....+++.... .-+..|..++|+|++..+
T Consensus       268 ~ev--vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~L  340 (942)
T KOG0973|consen  268 VEV--VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSL  340 (942)
T ss_pred             eEE--EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeE
Confidence            888  888772     11            67899999999999998888887743 235679999999996433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.84  E-value=1e-19  Score=161.47  Aligned_cols=164  Identities=16%  Similarity=0.237  Sum_probs=135.0

Q ss_pred             eccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecC---CcEEEEEeCCCeEEEEECC
Q 037288          252 VASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHS---GNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~---~~~l~sg~~dg~i~iwd~~  326 (513)
                      -.+|+..|.++.|-| |.-.+.+++ |.+++|||..+-+....+..++.|.+-+++|-   .-+||+|.+|-.|++.|+.
T Consensus        97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            357888999999999 444555554 66799999999999998999999999999984   3689999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ++....   .+.+|++.|.++.|+|                                 ..+-.|++|+.||.|++||+|.
T Consensus       177 SGs~sH---~LsGHr~~vlaV~Wsp---------------------------------~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  177 SGSFSH---TLSGHRDGVLAVEWSP---------------------------------SSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             CCccee---eeccccCceEEEEecc---------------------------------CceeEEEecCCCceEEEEEeec
Confidence            998755   8999999999988865                                 2455788999999999999984


Q ss_pred             CCccceEEe--------------cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          407 TTRGAVQSY--------------EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       407 ~~~~~~~~~--------------~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      . .++...+              ..|.+.+..  ++|+.++.++++++.|..+++|+..+|+
T Consensus       221 a-sgcf~~lD~hn~k~~p~~~~n~ah~gkvng--la~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  221 A-SGCFRVLDQHNTKRPPILKTNTAHYGKVNG--LAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             c-cceeEEeecccCccCccccccccccceeee--eeecccchhhhhccCccceEEeecccCc
Confidence            2 1244443              345566666  8999999999999999999999998876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.3e-18  Score=153.16  Aligned_cols=267  Identities=13%  Similarity=0.104  Sum_probs=196.3

Q ss_pred             ccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC
Q 037288          188 SSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN  267 (513)
Q Consensus       188 s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~  267 (513)
                      +.|+++++++..          ..+++..     .+|.+.+|+.....             +.....|..++.+++|.++
T Consensus        14 d~IS~v~f~~~~----------~~LLvss-----WDgslrlYdv~~~~-------------l~~~~~~~~plL~c~F~d~   65 (323)
T KOG1036|consen   14 DGISSVKFSPSS----------SDLLVSS-----WDGSLRLYDVPANS-------------LKLKFKHGAPLLDCAFADE   65 (323)
T ss_pred             hceeeEEEcCcC----------CcEEEEe-----ccCcEEEEeccchh-------------hhhheecCCceeeeeccCC
Confidence            557777776333          3333222     58889888877431             2224568899999999987


Q ss_pred             CCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEE
Q 037288          268 PSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL  347 (513)
Q Consensus       268 g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v  347 (513)
                      ...+..+.|+.|+.+|+.++....+-.|..+|.|+.+++....+++|+.|++|++||.+......   ++ .....|.++
T Consensus        66 ~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~---~~-d~~kkVy~~  141 (323)
T KOG1036|consen   66 STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG---TF-DQGKKVYCM  141 (323)
T ss_pred             ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---cc-ccCceEEEE
Confidence            77777778999999999999988888899999999999988999999999999999999744321   22 233489999


Q ss_pred             eeCC-eEEEeE-------eecccCcccc-eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc--cceEEec
Q 037288          348 QRND-RVTNEQ-------WFELKANIWP-SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR--GAVQSYE  416 (513)
Q Consensus       348 ~~~~-~~~s~~-------w~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~--~~~~~~~  416 (513)
                      +... .++.|.       ||++.-.... ...-...-.+.|+..++ ++.-+++++-||.|.+=.+...+.  ..-..|+
T Consensus       142 ~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFk  220 (323)
T KOG1036|consen  142 DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK  220 (323)
T ss_pred             eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence            8887 666654       8888755432 11222233566766665 777788899999998876652111  1334566


Q ss_pred             CCCCc-------eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288          417 GHVNS-------HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE  487 (513)
Q Consensus       417 ~h~~~-------v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~  487 (513)
                      .|...       +..-+++|+|--+.|+|||.||.|.+||+.+.+.+..+..-...|.+++|+.++.+||.+..-..+
T Consensus       221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye  298 (323)
T KOG1036|consen  221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYE  298 (323)
T ss_pred             eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhh
Confidence            66431       122348999998899999999999999999999999887666779999999998888877766554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=6.9e-18  Score=151.88  Aligned_cols=226  Identities=12%  Similarity=0.076  Sum_probs=182.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeC--CCeEEEEECCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFR--NGAIVTVDVRK  327 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~--dg~i~iwd~~~  327 (513)
                      +......|.+++|+++|.++++++ |+.++|||..+++.+.++.++ -.|..+.|....+.++.++.  |.+|+..++.+
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence            344567999999999999998865 558999999999998888754 45888889877777766666  89999999998


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      .+.   ++.+.||...|.+++.+|   .+++++       ||++..+...    ........+.+++|+|-+||++...+
T Consensus        90 Nky---lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   90 NKY---LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             Cce---EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce----EEecCCCcceeECCCCcEEEEecCCC
Confidence            886   669999999999999999   788887       9998655332    22223344568999999999999888


Q ss_pred             eEEEEecCCCCccceEEecCC---CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC---eEEEEE
Q 037288          398 TVKLYDHRLTTRGAVQSYEGH---VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV---PSAVCW  471 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h---~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~---v~~v~~  471 (513)
                      .|++||+|....++..++.-.   ....+.  +.|+|||++|+.+...+.+++.|.-+|....++..+...   .-..+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~--l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTD--LEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceee--eEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            999999998777787777543   333444  899999999999999999999999999999887655322   367899


Q ss_pred             cCCCceEEeeCCCee
Q 037288          472 RTQRSMGPQIEGKIH  486 (513)
Q Consensus       472 ~p~~~~~~t~~~~~~  486 (513)
                      .|++.++.+++.|-.
T Consensus       241 tPds~Fvl~gs~dg~  255 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGT  255 (311)
T ss_pred             CCCCcEEEEecCCCc
Confidence            999888777777544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.83  E-value=1.9e-19  Score=169.87  Aligned_cols=260  Identities=14%  Similarity=0.151  Sum_probs=190.9

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEe-------
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKL-------  195 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~-------  195 (513)
                      ..+|+.|++||.|+||++.... ........+         +..     +.+++|+..+.++...+--..+++       
T Consensus       227 ~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH---------~k~-----Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~  291 (503)
T KOG0282|consen  227 GHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGH---------RKP-----VRDASFNNCGTSFLSASFDRFLKLWDTETGQ  291 (503)
T ss_pred             eeEEEecCCCceEEEEEEecCc-ceehhhhcc---------hhh-----hhhhhccccCCeeeeeecceeeeeeccccce
Confidence            5689999999999999995532 111222222         222     677788777655443332222222       


Q ss_pred             ------cCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC
Q 037288          196 ------FGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS  269 (513)
Q Consensus       196 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~  269 (513)
                            .+..+.+..++|.+.+.+++.+    .++.+..|++.+++.            ++++..|-+.|.++.|-++|+
T Consensus       292 ~~~~f~~~~~~~cvkf~pd~~n~fl~G~----sd~ki~~wDiRs~kv------------vqeYd~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  292 VLSRFHLDKVPTCVKFHPDNQNIFLVGG----SDKKIRQWDIRSGKV------------VQEYDRHLGAILDITFVDEGR  355 (503)
T ss_pred             EEEEEecCCCceeeecCCCCCcEEEEec----CCCcEEEEeccchHH------------HHHHHhhhhheeeeEEccCCc
Confidence                  2455667788888755555444    677888888776553            345778889999999999999


Q ss_pred             EEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288          270 QAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR  346 (513)
Q Consensus       270 ~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  346 (513)
                      .+++++|+. ++||+...+..+....  ..-...|+..+|+++++++-+.|..|.++.+...-....-+.+.+|..+=.+
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            999888765 9999999887665544  3334678899999999999999999999987654332223467777544333


Q ss_pred             EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEE
Q 037288          347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ  426 (513)
Q Consensus       347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~  426 (513)
                                                      +-+.|+|||.+|++|+.||.+.+||.+  ....+..+++|...+..  
T Consensus       436 --------------------------------~~v~fSpDG~~l~SGdsdG~v~~wdwk--t~kl~~~lkah~~~ci~--  479 (503)
T KOG0282|consen  436 --------------------------------CQVDFSPDGRTLCSGDSDGKVNFWDWK--TTKLVSKLKAHDQPCIG--  479 (503)
T ss_pred             --------------------------------eeEEEcCCCCeEEeecCCccEEEeech--hhhhhhccccCCcceEE--
Confidence                                            225789999999999999999999997  56688899999877655  


Q ss_pred             EEEcCCC-CEEEEEeCCCcEEEEe
Q 037288          427 LGVDQSE-RFVMSGGEDCKLRIWS  449 (513)
Q Consensus       427 ~~~s~~g-~~l~sg~~Dg~v~vwd  449 (513)
                      +.|+|.. ..+|+++.||.|++|+
T Consensus       480 v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  480 VDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEecCCCcceeEecccCceeEecC
Confidence            8999964 6799999999999996

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=2.6e-19  Score=164.00  Aligned_cols=251  Identities=12%  Similarity=0.098  Sum_probs=166.7

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      ..+.++-+..|.|.+|+++.....+...-...++....++-+...+..+-...+|+|-.                     
T Consensus       165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~---------------------  223 (440)
T KOG0302|consen  165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK---------------------  223 (440)
T ss_pred             cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc---------------------
Confidence            34667778999999999965443322222222222222222333333445566776631                     


Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAA  280 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~  280 (513)
                                 ...++++++.+.+.+|...+     ..|.+.+.+    +.+|+..|-.+.|||... .||+| .|+.|+
T Consensus       224 -----------~g~LlsGDc~~~I~lw~~~~-----g~W~vd~~P----f~gH~~SVEDLqWSptE~~vfaScS~DgsIr  283 (440)
T KOG0302|consen  224 -----------TGRLLSGDCVKGIHLWEPST-----GSWKVDQRP----FTGHTKSVEDLQWSPTEDGVFASCSCDGSIR  283 (440)
T ss_pred             -----------ccccccCccccceEeeeecc-----CceeecCcc----ccccccchhhhccCCccCceEEeeecCceEE
Confidence                       11123444555566655442     234444444    778999999999999544 67766 577899


Q ss_pred             EEECCCC---cEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeE
Q 037288          281 MVDMETG---MASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQ  357 (513)
Q Consensus       281 vwd~~~~---~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~  357 (513)
                      |||++.+   .++.+..|.+.|..|.|+..-.+|++|+.||+++|||+|+-+....+..+.-|..+|++|.|+|      
T Consensus       284 IWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p------  357 (440)
T KOG0302|consen  284 IWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP------  357 (440)
T ss_pred             EEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc------
Confidence            9999988   4566666999999999998888999999999999999998775544668888999999988865      


Q ss_pred             eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc--------------cceEEecCCCCcee
Q 037288          358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR--------------GAVQSYEGHVNSHT  423 (513)
Q Consensus       358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~--------------~~~~~~~~h~~~v~  423 (513)
                                                 .+...|++++.|.+|.+||+.....              -+-+-+-.|.+.-.
T Consensus       358 ---------------------------~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke  410 (440)
T KOG0302|consen  358 ---------------------------HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE  410 (440)
T ss_pred             ---------------------------ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH
Confidence                                       3566788999999999999864211              01122223433222


Q ss_pred             EEEEEEcCC-CCEEEEEeCCCcEEEE
Q 037288          424 RIQLGVDQS-ERFVMSGGEDCKLRIW  448 (513)
Q Consensus       424 ~~~~~~s~~-g~~l~sg~~Dg~v~vw  448 (513)
                      .-.+.|++. ..+|++.+.|| +.||
T Consensus       411 ~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  411 VKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             hhhheeccCCCCeEEEecccc-eeEE
Confidence            233778775 46788888888 3444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2e-18  Score=154.91  Aligned_cols=202  Identities=9%  Similarity=0.052  Sum_probs=152.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeee-CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRS-KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      -..|.-.|..+-...++.+|++++.++ |.+|++. |+.+..+.. ...-+..+.+|+|++|++++....|++|.+--.+
T Consensus       183 ~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k  261 (420)
T KOG2096|consen  183 ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK  261 (420)
T ss_pred             chhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence            345777788888888899999998776 9999999 877766663 3446777899999999999999999999863221


Q ss_pred             -----cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          330 -----RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       330 -----~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                           ....+..+.+|...|...                                  +|+++...+++.+.||++++||.
T Consensus       262 dG~fqev~rvf~LkGH~saV~~~----------------------------------aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  262 DGTFQEVKRVFSLKGHQSAVLAA----------------------------------AFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             Ccchhhhhhhheeccchhheeee----------------------------------eeCCCcceeEEEecCCcEEEeec
Confidence                 111244678898888884                                  55678999999999999999997


Q ss_pred             CCC--Cc---cceEEe--cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCc
Q 037288          405 RLT--TR---GAVQSY--EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       405 ~~~--~~---~~~~~~--~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~  476 (513)
                      ..-  ..   ..+++.  .-|...-..+++..+|+|+.|+.+. ..+++++..++|+..-++ +.|+..|.+++|++++.
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~  386 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK  386 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence            521  11   122222  1122222235689999999776644 567999999999877765 46888999999999999


Q ss_pred             eEEeeCCCeeeee
Q 037288          477 MGPQIEGKIHEEF  489 (513)
Q Consensus       477 ~~~t~~~~~~~~~  489 (513)
                      +++|++..+.+.+
T Consensus       387 ~~atcGdr~vrv~  399 (420)
T KOG2096|consen  387 YIATCGDRYVRVI  399 (420)
T ss_pred             EEeeecceeeeee
Confidence            9999999988643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.82  E-value=5.3e-18  Score=169.74  Aligned_cols=221  Identities=17%  Similarity=0.207  Sum_probs=173.9

Q ss_pred             cEEEEEEcCC-----CCEEEEEe-CCeEEEEECCCCcE-EEEeeeC------CCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          258 TVWTADFCTN-----PSQAVIGT-NLGAAMVDMETGMA-SWVCRSK------SDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       258 ~V~~~~~s~~-----g~~l~s~s-~~~i~vwd~~~~~~-~~~~~~~------~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      +|..+++...     .+.+++.- +..++.|+...... ..++.+.      ..+++++.++.|++.+.|...|.|-+|+
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN  476 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence            5666665431     12333333 33488999887664 4445544      5689999999999999999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      +.++-....+..-+.|..+|+.++...   .+++++       |+..+..+  ...+.....+.++ .++.....++++.
T Consensus       477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l--~~~l~l~~~~~~i-v~hr~s~l~a~~~  553 (910)
T KOG1539|consen  477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL--KKSLRLGSSITGI-VYHRVSDLLAIAL  553 (910)
T ss_pred             cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce--eeeeccCCCccee-eeeehhhhhhhhc
Confidence            998865442333479999999999877   466655       88877763  3455566666666 4455677889999


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .|-.|.++|..  ....++.|.||.+.++.  ++|||||+||++++.|++|++||+.++.++-.+.. +.+++.+.|+|+
T Consensus       554 ddf~I~vvD~~--t~kvvR~f~gh~nritd--~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPn  628 (910)
T KOG1539|consen  554 DDFSIRVVDVV--TRKVVREFWGHGNRITD--MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPN  628 (910)
T ss_pred             CceeEEEEEch--hhhhhHHhhccccceee--eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCC
Confidence            99999999996  55588999999999988  99999999999999999999999999999988765 678999999999


Q ss_pred             CceEEeeCCCee
Q 037288          475 RSMGPQIEGKIH  486 (513)
Q Consensus       475 ~~~~~t~~~~~~  486 (513)
                      +.++||...|..
T Consensus       629 gD~LAT~Hvd~~  640 (910)
T KOG1539|consen  629 GDFLATVHVDQN  640 (910)
T ss_pred             CCEEEEEEecCc
Confidence            999999988843

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.82  E-value=5.6e-19  Score=153.40  Aligned_cols=164  Identities=18%  Similarity=0.271  Sum_probs=135.2

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      ..+.+|.+.|..+-|+...+.+.++ .|++|++||..++..+..+..+..|+++..+++|.+|.++ .-+.|.+||..+-
T Consensus       137 ~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf  215 (334)
T KOG0278|consen  137 KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF  215 (334)
T ss_pred             hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccc
Confidence            4588999999999999877766665 4566999999999999999999999999999999987666 5678999999877


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      ....                                     ..+++-.|.+ ..++|+...|++|+.|+.++.||..  .
T Consensus       216 ~~lK-------------------------------------s~k~P~nV~S-ASL~P~k~~fVaGged~~~~kfDy~--T  255 (334)
T KOG0278|consen  216 GLLK-------------------------------------SYKMPCNVES-ASLHPKKEFFVAGGEDFKVYKFDYN--T  255 (334)
T ss_pred             ccee-------------------------------------eccCcccccc-ccccCCCceEEecCcceEEEEEecc--C
Confidence            6432                                     2223333433 4788999999999999999999996  4


Q ss_pred             ccceEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          409 RGAVQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       409 ~~~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      ...+..+ ++|.++|.+  +.|+|+|...++|++||+|+||.+..++..
T Consensus       256 geEi~~~nkgh~gpVhc--VrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  256 GEEIGSYNKGHFGPVHC--VRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CceeeecccCCCCceEE--EEECCCCceeeccCCCceEEEEEecCCCch
Confidence            4466665 899999877  899999999999999999999998776644

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.9e-18  Score=168.21  Aligned_cols=221  Identities=16%  Similarity=0.133  Sum_probs=180.0

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          256 KCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ...|+++.|+++|.+||+|. ++.|.|||..+.+.+..+.  |...|-+++|+  +..+.+|+.|+.|..+|++..+...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            78999999999999999995 5569999998887666555  67779999998  7899999999999999999988654


Q ss_pred             ccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEE
Q 037288          333 SSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVK  400 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~  400 (513)
                        ..+.+|...|..+.|++   .+++|+       ||...... ......|...|..+.+.+....+||+|+  .|++|+
T Consensus       295 --~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~  371 (484)
T KOG0305|consen  295 --STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK  371 (484)
T ss_pred             --hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence              35899999999999999   666666       88843332 3445567778888877777788999875  599999


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG--GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg--~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      +||..  ....+..... ...|..  +.|++..+-|+++  -.++.|.||+..+.+++..+.+|...|..++++|++..+
T Consensus       372 fwn~~--~g~~i~~vdt-gsQVcs--L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i  446 (484)
T KOG0305|consen  372 FWNTN--TGARIDSVDT-GSQVCS--LIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI  446 (484)
T ss_pred             EEEcC--CCcEeccccc-CCceee--EEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence            99996  4446655542 334544  8999998766653  447789999999999999999999999999999999998


Q ss_pred             EeeCCCee
Q 037288          479 PQIEGKIH  486 (513)
Q Consensus       479 ~t~~~~~~  486 (513)
                      ++.+.|--
T Consensus       447 ~t~a~DET  454 (484)
T KOG0305|consen  447 VTGAADET  454 (484)
T ss_pred             EEecccCc
Confidence            88888844

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.3e-17  Score=141.27  Aligned_cols=288  Identities=16%  Similarity=0.145  Sum_probs=197.1

Q ss_pred             eeCCCCceeeeeEEeccccCeEEEEEeeccc--ccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccce
Q 037288          114 VQTPEGQFRTDVLLTGSVNGFFSLFEVGNVG--QHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVS  191 (513)
Q Consensus       114 ~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~  191 (513)
                      .+-|.|.    +-+.|+...++|+...-...  ....+.....|...   .+.++-+.+.+...+|+|.+..+...+.-.
T Consensus        39 ~fhp~g~----lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~---~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   39 AFHPAGG----LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL---CKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             EecCCCc----eEEeccCCceEEEEccccccCcccccccccCCCeEE---eeeccccCccEEEEEecCccCeEEecCCCc
Confidence            3556654    57889999999987652211  11111112222222   236666677888899999866655554322


Q ss_pred             EEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC----C
Q 037288          192 CIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT----N  267 (513)
Q Consensus       192 si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~----~  267 (513)
                      .|++.+                               ++.++-+..         -.-..+.-|.+.|..++|-.    .
T Consensus       112 ~ik~l~-------------------------------fn~dt~~~~---------g~dle~nmhdgtirdl~fld~~~s~  151 (350)
T KOG0641|consen  112 TIKVLP-------------------------------FNADTCNAT---------GHDLEFNMHDGTIRDLAFLDDPESG  151 (350)
T ss_pred             eEEEEe-------------------------------ccccccccc---------CcceeeeecCCceeeeEEecCCCcC
Confidence            222211                               111111110         01234777999999999964    3


Q ss_pred             CCEEEEEe--CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc--ccCc
Q 037288          268 PSQAVIGT--NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR--RHRI  342 (513)
Q Consensus       268 g~~l~s~s--~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~h~~  342 (513)
                      +.+|++++  |..|.+-|..+|+....+. |.+.|.++ ++-+|-++++|+.|.+|++||++....+.   ++.  -|.+
T Consensus       152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~---~l~~~~~~~  227 (350)
T KOG0641|consen  152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN---TLDNDFHDG  227 (350)
T ss_pred             ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceee---eccCcccCC
Confidence            55787764  3447888888888665554 78888887 35578999999999999999999876543   221  1111


Q ss_pred             CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCce
Q 037288          343 PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH  422 (513)
Q Consensus       343 ~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v  422 (513)
                      ..                             .++....++..|.|++|++|-.|....+||+|  -...++.|..|...|
T Consensus       228 gl-----------------------------essavaav~vdpsgrll~sg~~dssc~lydir--g~r~iq~f~phsadi  276 (350)
T KOG0641|consen  228 GL-----------------------------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIR--GGRMIQRFHPHSADI  276 (350)
T ss_pred             Cc-----------------------------ccceeEEEEECCCcceeeeccCCCceEEEEee--CCceeeeeCCCccce
Confidence            11                             11222235788999999999999999999998  666999999999998


Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          423 TRIQLGVDQSERFVMSGGEDCKLRIWSIRSG----ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       423 ~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      .+  +.|+|...++++++.|..|++-|+...    -++.....|...+..+.|+|...-|++++.|-
T Consensus       277 r~--vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk  341 (350)
T KOG0641|consen  277 RC--VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK  341 (350)
T ss_pred             eE--EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence            87  889999999999999999999998642    23444567788899999999988888877763

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.82  E-value=5.2e-19  Score=167.91  Aligned_cols=239  Identities=12%  Similarity=0.079  Sum_probs=177.3

Q ss_pred             cccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcE----EEEee--eCCCeEEEEEecCCcEEEEEe
Q 037288          243 IIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMA----SWVCR--SKSDILAQQVIHSGNVVLCGF  315 (513)
Q Consensus       243 ~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~----~~~~~--~~~~V~~l~~~~~~~~l~sg~  315 (513)
                      ..+..+-..+.+|+..|.++++.|.|..+++|+ |-.|++||+.....    .+.+.  -...|.+++|++.|..|++.+
T Consensus       154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence            345556677899999999999999999999996 55699999975431    11222  234599999999999888888


Q ss_pred             CCCeEEEEECCCCcc---------ccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecC-
Q 037288          316 RNGAIVTVDVRKRQR---------GCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMP-  374 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~-  374 (513)
                      .....+++|-.....         +..+..-.+|...+++.+|+|    .+++++       |++....- ....+++. 
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~  312 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKP  312 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeecc
Confidence            889999999764432         112456689999999999999    788887       88875442 12223221 


Q ss_pred             ----C-CceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc-eEEecCCCC--ceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          375 ----S-SISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA-VQSYEGHVN--SHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       375 ----~-~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~-~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                          . .+++ +.|+++++.||+|..||.|.+||.+.....+ +..-.+|..  .+++  +.||+||++|++-|.|++++
T Consensus       313 ~~g~Rv~~ts-C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its--i~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  313 AGGKRVPVTS-CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS--ISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             CCCcccCcee-eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE--EEeccccchhhhccCCCcee
Confidence                1 2333 4799999999999999999999987333333 334467877  6666  99999999999999999999


Q ss_pred             EEeCCCC-eEEEEecCC--CCCeEEEEEcCCCceEEeeCCCe
Q 037288          447 IWSIRSG-ELVFEDKFS--NSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       447 vwd~~~~-~~~~~~~~~--~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +||++.. +++.+..+-  .-+-+.++|+|+..+++|+..-.
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~  431 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP  431 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence            9999875 455554322  34568899999977776665433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=6.3e-19  Score=163.10  Aligned_cols=228  Identities=14%  Similarity=0.204  Sum_probs=167.5

Q ss_pred             eeEEeccccCeEEEEEeeccccc--ccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCc
Q 037288          124 DVLLTGSVNGFFSLFEVGNVGQH--AHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPS  201 (513)
Q Consensus       124 ~~l~tg~~~G~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~  201 (513)
                      .+|++.+-+-.+++|++.++...  +..++.                 ..+.+++|.|++..+...+             
T Consensus       282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~-----------------~S~~sc~W~pDg~~~V~Gs-------------  331 (519)
T KOG0293|consen  282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLG-----------------FSVSSCAWCPDGFRFVTGS-------------  331 (519)
T ss_pred             CeEEecCchHheeeccCCcchhhhhcccCcC-----------------CCcceeEEccCCceeEecC-------------
Confidence            45777777778999999776533  222222                 2278899999954444332             


Q ss_pred             cccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEE-EEeCCeEE
Q 037288          202 CATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAV-IGTNLGAA  280 (513)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~-s~s~~~i~  280 (513)
                                          .++.+..|+++...  ...|.-..          ...|++++..+||+++. ++.|..|+
T Consensus       332 --------------------~dr~i~~wdlDgn~--~~~W~gvr----------~~~v~dlait~Dgk~vl~v~~d~~i~  379 (519)
T KOG0293|consen  332 --------------------PDRTIIMWDLDGNI--LGNWEGVR----------DPKVHDLAITYDGKYVLLVTVDKKIR  379 (519)
T ss_pred             --------------------CCCcEEEecCCcch--hhcccccc----------cceeEEEEEcCCCcEEEEEeccccee
Confidence                                34555666665221  11111111          14799999999999777 45677799


Q ss_pred             EEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeec
Q 037288          281 MVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFE  360 (513)
Q Consensus       281 vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~  360 (513)
                      +++.++.........+.+|++++.+.|++++++--.+..+++||+.....   ++.+.||+..-.-|.            
T Consensus       380 l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---v~kY~Ghkq~~fiIr------------  444 (519)
T KOG0293|consen  380 LYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---VRKYFGHKQGHFIIR------------  444 (519)
T ss_pred             eechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH---HHHhhcccccceEEE------------
Confidence            99999887776777888999999999999999999999999999996654   558888865432211            


Q ss_pred             ccCcccceeEeecCCCceEEEEEc-CCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC-CCEEEE
Q 037288          361 LKANIWPSHTTFMPSSISCLQSLQ-LYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMS  438 (513)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~s  438 (513)
                                          .+|- .+..++++|+.|+.|+||+..  ...++.++.||...|.+  ++|+|. ...+|+
T Consensus       445 --------------------SCFgg~~~~fiaSGSED~kvyIWhr~--sgkll~~LsGHs~~vNc--VswNP~~p~m~AS  500 (519)
T KOG0293|consen  445 --------------------SCFGGGNDKFIASGSEDSKVYIWHRI--SGKLLAVLSGHSKTVNC--VSWNPADPEMFAS  500 (519)
T ss_pred             --------------------eccCCCCcceEEecCCCceEEEEEcc--CCceeEeecCCcceeeE--EecCCCCHHHhhc
Confidence                                0222 255789999999999999987  66699999999999888  999995 467899


Q ss_pred             EeCCCcEEEEeCCC
Q 037288          439 GGEDCKLRIWSIRS  452 (513)
Q Consensus       439 g~~Dg~v~vwd~~~  452 (513)
                      ||.||+|+||....
T Consensus       501 asDDgtIRIWg~~~  514 (519)
T KOG0293|consen  501 ASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCeEEEecCCc
Confidence            99999999998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.81  E-value=1.5e-18  Score=164.19  Aligned_cols=246  Identities=13%  Similarity=0.143  Sum_probs=194.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee--e-CC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR--S-KS  297 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~--~-~~  297 (513)
                      ..||+.+|++..+...   .|+....    ...-..-|.++.+.|||+.|++|+.. ++.|||+..........  . .-
T Consensus       438 GkgcVKVWdis~pg~k---~PvsqLd----cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssap  510 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNK---SPVSQLD----CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP  510 (705)
T ss_pred             CCCeEEEeeccCCCCC---Ccccccc----ccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcch
Confidence            3689999999877443   3333322    22345689999999999999998775 49999998776433333  2 23


Q ss_pred             CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccc
Q 037288          298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWP  367 (513)
Q Consensus       298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~  367 (513)
                      ...+++.+||.++.++++.||.|.|||+.+...   ++.|.+|.+.+.||+.++   ++-+|+       ||++++....
T Consensus       511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~---VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL---VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             hhhhhhcCCccceeeeeccCCcEEEEEccccee---eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence            478999999999999999999999999998876   669999999999999997   777876       9999876543


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEE
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI  447 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~v  447 (513)
                      .+.+  .+.|.++ -+.|++.+|++|-.++.+.+-...   ...-..+.-|...|  +++.|.+.|+|+++.|.|+-+..
T Consensus       588 qhdF--~SQIfSL-g~cP~~dWlavGMens~vevlh~s---kp~kyqlhlheScV--LSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  588 QHDF--SSQIFSL-GYCPTGDWLAVGMENSNVEVLHTS---KPEKYQLHLHESCV--LSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             hhhh--hhhheec-ccCCCccceeeecccCcEEEEecC---CccceeecccccEE--EEEEecccCceeeecCchhhhhh
Confidence            3222  3455554 567899999999999999888864   22333455577666  45889999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          448 WSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       448 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |.+.-|..++..+. .++|.++..+-+..+++|.+++-+
T Consensus       660 wrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  660 WRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             ccCccccceeeccc-cCcceeeeeccCceEEEecCCCcc
Confidence            99999998888775 567999999999999999999855

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.81  E-value=2.9e-18  Score=168.44  Aligned_cols=189  Identities=17%  Similarity=0.153  Sum_probs=155.2

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ++..+.+|+..|.|++...++. +++| -|.++++|-...-... ...|+..|+++++-|++ .+++|+.|.+|++|.-.
T Consensus        93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~  169 (745)
T KOG0301|consen   93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG  169 (745)
T ss_pred             chhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC
Confidence            3567999999999999988888 5566 5788999987533222 34599999999999887 88999999999999663


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                        +.   ++++.+|.+.|+.+++                                 +  ++..|++++.||.|++|++  
T Consensus       170 --~~---l~tf~gHtD~VRgL~v---------------------------------l--~~~~flScsNDg~Ir~w~~--  207 (745)
T KOG0301|consen  170 --TL---LKTFSGHTDCVRGLAV---------------------------------L--DDSHFLSCSNDGSIRLWDL--  207 (745)
T ss_pred             --ch---hhhhccchhheeeeEE---------------------------------e--cCCCeEeecCCceEEEEec--
Confidence              22   6699999999999665                                 1  3556899999999999998  


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                       ...++..+.||++.+++  ++...++..++++|+|++++||+..  ++.+.+......|+++++-+++.+++.++.+.-
T Consensus       208 -~ge~l~~~~ghtn~vYs--is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~V  282 (745)
T KOG0301|consen  208 -DGEVLLEMHGHTNFVYS--ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRV  282 (745)
T ss_pred             -cCceeeeeeccceEEEE--EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceE
Confidence             56799999999999988  5556778899999999999999976  888888877778999999988777666666555

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=9.3e-18  Score=148.77  Aligned_cols=240  Identities=12%  Similarity=0.134  Sum_probs=170.5

Q ss_pred             cCCCcccceeeeeccccCCC---ccEEEEecCCCCCCCCCcccccCceeEEec-cccCcEEEEEEcCCCCEEEEEeCCeE
Q 037288          204 TDGGSVRHALITSLGSETTG---GSIYALNLDNPLDIGPNFSIIRRSTMHLVA-SFKCTVWTADFCTNPSQAVIGTNLGA  279 (513)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~s~~g~~l~s~s~~~i  279 (513)
                      +++|..+.++.+.+......   -+..+|.+..+.......++   +++..+. .+-+.|.|+.|.|++..+++-.+..|
T Consensus        70 as~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl---E~v~~Ldteavg~i~cvew~Pns~klasm~dn~i  146 (370)
T KOG1007|consen   70 ASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL---ECVASLDTEAVGKINCVEWEPNSDKLASMDDNNI  146 (370)
T ss_pred             hcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh---hHhhcCCHHHhCceeeEEEcCCCCeeEEeccCce
Confidence            34555555555444322222   34555666644333111111   1222233 45569999999999999999899999


Q ss_pred             EEEECCCCcE-EEEee------eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288          280 AMVDMETGMA-SWVCR------SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN  350 (513)
Q Consensus       280 ~vwd~~~~~~-~~~~~------~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  350 (513)
                      .+|++..+.. +..+.      +....++-+|+|  ||+.+++. .|+++..||+|+.+..  ...-.+|...|..++|+
T Consensus       147 ~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~--~sI~dAHgq~vrdlDfN  223 (370)
T KOG1007|consen  147 VLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN--NSIEDAHGQRVRDLDFN  223 (370)
T ss_pred             EEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh--cchhhhhcceeeeccCC
Confidence            9999987764 22221      344578889998  67888776 5899999999987653  23445788888888886


Q ss_pred             CeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEE
Q 037288          351 DRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGV  429 (513)
Q Consensus       351 ~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~  429 (513)
                      |                                 ....+|++|+.||.|++||.|  ... +++++.+|...|.+  +.|
T Consensus       224 p---------------------------------nkq~~lvt~gDdgyvriWD~R--~tk~pv~el~~HsHWvW~--VRf  266 (370)
T KOG1007|consen  224 P---------------------------------NKQHILVTCGDDGYVRIWDTR--KTKFPVQELPGHSHWVWA--VRF  266 (370)
T ss_pred             C---------------------------------CceEEEEEcCCCccEEEEecc--CCCccccccCCCceEEEE--EEe
Confidence            6                                 245678999999999999999  444 99999999988866  888


Q ss_pred             cCC-CCEEEEEeCCCcEEEEeCCCC-----------------------------eEEEEecCCCCCeEEEEEcCC-CceE
Q 037288          430 DQS-ERFVMSGGEDCKLRIWSIRSG-----------------------------ELVFEDKFSNSVPSAVCWRTQ-RSMG  478 (513)
Q Consensus       430 s~~-g~~l~sg~~Dg~v~vwd~~~~-----------------------------~~~~~~~~~~~~v~~v~~~p~-~~~~  478 (513)
                      +|. +.+|++||.|..|.+|...+-                             -++.++..|+..|.+++|+.. +.+|
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF  346 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF  346 (370)
T ss_pred             cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence            885 678999999999999965311                             133456778889999999976 7888


Q ss_pred             EeeCCCee
Q 037288          479 PQIEGKIH  486 (513)
Q Consensus       479 ~t~~~~~~  486 (513)
                      |+-+-|-.
T Consensus       347 ASLSYDGR  354 (370)
T KOG1007|consen  347 ASLSYDGR  354 (370)
T ss_pred             EEeccCce
Confidence            88765543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.81  E-value=2.2e-18  Score=175.08  Aligned_cols=217  Identities=16%  Similarity=0.210  Sum_probs=176.6

Q ss_pred             ecc-ccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEE--eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          252 VAS-FKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWV--CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       252 ~~~-h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~--~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      +.+ |...+.+..|+  ..++.++++ .+|++||..++..+..  ..|.+.|.++++..-+.++++|+.|.++++||..+
T Consensus       203 ~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  203 LLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             ecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            444 56678888887  456666655 5588999999986655  44889999999987679999999999999999999


Q ss_pred             CccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      +....   .+.+|...|.+++..+ .+++|+       |++..+...  .++. |..+|.++..   ++.++++|+.|++
T Consensus       281 g~C~~---~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l--~l~~~h~~~V~~v~~---~~~~lvsgs~d~~  352 (537)
T KOG0274|consen  281 GECTH---SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL--NLLRGHTGPVNCVQL---DEPLLVSGSYDGT  352 (537)
T ss_pred             CcEEE---EecCCCceEEEEEccCceEeeccCCceEEEEeccCcceE--EEeccccccEEEEEe---cCCEEEEEecCce
Confidence            98854   8999999999999999 666655       888877654  3444 7788888744   4899999999999


Q ss_pred             EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCce
Q 037288          399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      |++||++  ..+++.++.+|...|++  +.+++. ..+++|+.|++|++||+.+. +++.++.+|.+.+..+.+..+  +
T Consensus       353 v~VW~~~--~~~cl~sl~gH~~~V~s--l~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~--~  425 (537)
T KOG0274|consen  353 VKVWDPR--TGKCLKSLSGHTGRVYS--LIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN--F  425 (537)
T ss_pred             EEEEEhh--hceeeeeecCCcceEEE--EEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccc--e
Confidence            9999998  56699999999999988  566554 89999999999999999999 999999999988866655544  5


Q ss_pred             EEeeCCCe
Q 037288          478 GPQIEGKI  485 (513)
Q Consensus       478 ~~t~~~~~  485 (513)
                      +++++.|-
T Consensus       426 Lvs~~aD~  433 (537)
T KOG0274|consen  426 LVSSSADG  433 (537)
T ss_pred             eEeccccc
Confidence            55555443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.80  E-value=2.6e-18  Score=153.59  Aligned_cols=168  Identities=18%  Similarity=0.212  Sum_probs=135.9

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcE---EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMA---SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~---~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      .+.++..|.+.|++++|+|....|++|+. ++|+++|+.....   ...+....+|.++.|+|.|.+|++|..-.++++|
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            36778999999999999999999999975 5599999976532   2334456679999999999999999999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  393 (513)
                      |+.+.+.......-..|.+.|+++.+++   .+++++       ||...+++.....-.|.+.-.|...|..+++|++++
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS  323 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS  323 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence            9998876543445568999999999999   677777       888877766555556666666667899999999999


Q ss_pred             ecCCeEEEEecCCCCccceEEecC
Q 037288          394 SMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       394 s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                      ++|..+++|.+.  ...++..|.|
T Consensus       324 G~DS~vkLWEi~--t~R~l~~YtG  345 (430)
T KOG0640|consen  324 GKDSTVKLWEIS--TGRMLKEYTG  345 (430)
T ss_pred             CCcceeeeeeec--CCceEEEEec
Confidence            999999999996  3345655543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=8.1e-18  Score=150.16  Aligned_cols=221  Identities=10%  Similarity=0.051  Sum_probs=163.4

Q ss_pred             ccCcEEEEEEcCC-CCEEEEE-eCCeEEEEECCC-CcEE--EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          255 FKCTVWTADFCTN-PSQAVIG-TNLGAAMVDMET-GMAS--WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       255 h~~~V~~~~~s~~-g~~l~s~-s~~~i~vwd~~~-~~~~--~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      -.+.|.+++|||. ..++++| -|++||+|+++. |..+  ....|.++|++++|+.||..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            4478999999994 4455444 488899999986 3432  234488999999999999999999999999999999986


Q ss_pred             cccccccccccCcCeEEEeeCC-----eEEEeEeeccc-----CcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND-----RVTNEQWFELK-----ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~w~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                          +..+..|..+|..+.|-+     .+++|+||..-     ....+..++.+++.+.++-.   ...+++++..+..|
T Consensus       106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i  178 (347)
T KOG0647|consen  106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHI  178 (347)
T ss_pred             ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcE
Confidence                557889999999999977     57888854321     13336677788888777633   35678899999999


Q ss_pred             EEEecCCCCccceEEecCCCCce--eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecCCC---------CCe
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSH--TRIQLGVDQSERFVMSGGEDCKLRIWSIRSG--ELVFEDKFSN---------SVP  466 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v--~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~--~~~~~~~~~~---------~~v  466 (513)
                      .+|+++..    ...++.+..+.  ...+++..+|..-.+.|+-.|.+-|..+..+  +.-++++.|.         ..|
T Consensus       179 ~vynL~n~----~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  179 AVYNLENP----PTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             EEEEcCCC----cchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence            99999621    12222222211  1123555566666699999999999999887  4444455553         258


Q ss_pred             EEEEEcCCCceEEeeCCCee
Q 037288          467 SAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       467 ~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ++++|+|..-.|+|.++|-.
T Consensus       255 Nsi~FhP~hgtlvTaGsDGt  274 (347)
T KOG0647|consen  255 NSIAFHPVHGTLVTAGSDGT  274 (347)
T ss_pred             cceEeecccceEEEecCCce
Confidence            89999999888888888866

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.4e-17  Score=155.86  Aligned_cols=222  Identities=15%  Similarity=0.148  Sum_probs=160.4

Q ss_pred             CccEEEEecCCCCCCCCCccccc---------CceeEEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEE
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIR---------RSTMHLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASW  291 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~  291 (513)
                      +-.|-+|+++-.+.++....+..         ...-..-.+|++.|.+++|+.+-+ .||+|+ |.+|++||+.++++..
T Consensus       201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~  280 (463)
T KOG0270|consen  201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS  280 (463)
T ss_pred             CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence            45777888876555443333221         011223457999999999998655 677775 6679999999999998


Q ss_pred             Eee-eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288          292 VCR-SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH  369 (513)
Q Consensus       292 ~~~-~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~  369 (513)
                      ++. |...|.+++|+|.. .+|++|+.|++|.+.|.|.....                                    ..
T Consensus       281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s------------------------------------~~  324 (463)
T KOG0270|consen  281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS------------------------------------GK  324 (463)
T ss_pred             ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc------------------------------------Cc
Confidence            888 66679999999965 89999999999999999974331                                    12


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEE
Q 037288          370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRI  447 (513)
Q Consensus       370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~v  447 (513)
                      .++..+.|..+.+-......|++++.||.|+-+|+|  +. .++.++++|.++|.+  +++++. ..+|++++.|+.|++
T Consensus       325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R--~~~~~vwt~~AHd~~ISg--l~~n~~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR--NPGKPVWTLKAHDDEISG--LSVNIQTPGLLSTASTDKVVKL  400 (463)
T ss_pred             eEEeccceEEEEecCCCceeEEEecCCceEEeeecC--CCCCceeEEEeccCCcce--EEecCCCCcceeeccccceEEE
Confidence            333444555555555667889999999999999999  44 499999999999998  555553 568899999999999


Q ss_pred             EeCCCCeE--EEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          448 WSIRSGEL--VFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       448 wd~~~~~~--~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      |++..-..  +..-...-+...+.++.|+ ..++|.++..
T Consensus       401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k  440 (463)
T KOG0270|consen  401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK  440 (463)
T ss_pred             EeecCCCCcccccccccccceeecccCCCcceEEEecCcc
Confidence            99875443  3332222344677788888 4445544444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=6.4e-18  Score=151.63  Aligned_cols=223  Identities=10%  Similarity=0.078  Sum_probs=170.2

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEE-eeeCCCeEEEEEecCC--cEEEEEeCCCeEEEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWV-CRSKSDILAQQVIHSG--NVVLCGFRNGAIVTVD  324 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~--~~l~sg~~dg~i~iwd  324 (513)
                      ++.+.+|..++.+++.  ++.++|+| +|++|+|||+.+...+.. +.|.+.|+++.|.+.-  +.|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            4568899999999998  68999988 567799999998875544 4588889999999876  4899999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC----eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      ......   +..+.+|.+.|+.++.+|    .+..|.      |++..++.-....+.+  ... ++.|+|.|.+|+.+.
T Consensus       114 ~~~W~~---~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at-~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  114 VGSWEL---LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KAT-LVSWSPQGDHFVVSG  187 (362)
T ss_pred             cCCeEE---eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cce-eeEEcCCCCEEEEEe
Confidence            988755   669999999999999999    233333      9988877543333332  222 257789999999988


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc--
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR--  472 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~--  472 (513)
                      .+ .|-+|.+.  .......+..   +...+++.| -++..|++|+.|+.|.+||..+..++..+..|...|-++.+-  
T Consensus       188 ~~-~i~i~q~d--~A~v~~~i~~---~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  188 RN-KIDIYQLD--NASVFREIEN---PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN  260 (362)
T ss_pred             cc-EEEEEecc--cHhHhhhhhc---cccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec
Confidence            77 68899885  3223333321   122233444 357789999999999999999999999999999999999853  


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      |.+.+++|.+.|-.
T Consensus       261 ~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  261 PEHEYLVTASSDGF  274 (362)
T ss_pred             CCceEEEEeccCce
Confidence            44677777766654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=6.9e-18  Score=158.53  Aligned_cols=227  Identities=13%  Similarity=0.134  Sum_probs=180.1

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEE----EE---------------eeeCCCeEEEEEecCC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMAS----WV---------------CRSKSDILAQQVIHSG  308 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~----~~---------------~~~~~~V~~l~~~~~~  308 (513)
                      +..+..|.-+|.+++++|+..+..+++ +++|.-|++.++...    ..               ..|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            455788999999999999999988875 556888999887622    00               1355679999999999


Q ss_pred             cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCce
Q 037288          309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSIS  378 (513)
Q Consensus       309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~  378 (513)
                      ++|++|+.|..|.|||.++.+.   ++.+.+|.+.|.+++|-.   .+++++       |.+...... ...+.|++.|.
T Consensus       215 kylatgg~d~~v~Iw~~~t~eh---v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v-etlyGHqd~v~  290 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEH---VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV-ETLYGHQDGVL  290 (479)
T ss_pred             cEEEecCCCceEEEecCcccch---hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH-HHHhCCcccee
Confidence            9999999999999999999987   458999999999999976   777776       776544332 23455677888


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288          379 CLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE  458 (513)
Q Consensus       379 ~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~  458 (513)
                      .+-+++ -++.+-+|+.|.++++|++.   ......|.+|.+.+.+  ++|- +..++++|+.||.|.+|++...+++++
T Consensus       291 ~IdaL~-reR~vtVGgrDrT~rlwKi~---eesqlifrg~~~sidc--v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~  363 (479)
T KOG0299|consen  291 GIDALS-RERCVTVGGRDRTVRLWKIP---EESQLIFRGGEGSIDC--VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFT  363 (479)
T ss_pred             eechhc-ccceEEeccccceeEEEecc---ccceeeeeCCCCCeee--EEEe-cccceeeccCCceEEEeeecccCceeE
Confidence            876665 56777778899999999993   4445568889888877  5553 456899999999999999999999988


Q ss_pred             ec-CC-----------CCCeEEEEEcCCCceEEeeCCCee
Q 037288          459 DK-FS-----------NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       459 ~~-~~-----------~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .. .|           ..+|++++-.|...++|+++.+-+
T Consensus       364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~  403 (479)
T KOG0299|consen  364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC  403 (479)
T ss_pred             eeccccccCCccccccccceeeeEecccCceEEecCCCCc
Confidence            53 12           127899999999999999986655

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=1.4e-18  Score=158.41  Aligned_cols=244  Identities=13%  Similarity=0.045  Sum_probs=191.7

Q ss_pred             ccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC
Q 037288          217 LGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK  296 (513)
Q Consensus       217 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~  296 (513)
                      +.++..+|.+.+|++.+.            .++.++..|.+.|..+++.. +..+.+|.|.+|+.|-++. .+..++..+
T Consensus        82 ~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~  147 (433)
T KOG0268|consen   82 VASGSCDGEVKIWNLSQR------------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGK  147 (433)
T ss_pred             hhccccCceEEEEehhhh------------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeecc
Confidence            345678899988887633            34566999999999999987 6667677788899999875 577778888


Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcc
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANI  365 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~  365 (513)
                      +.+..++-+..++.++++|.  .|.|||..-..+   ++.+.--...|.++.|+|   .++.++        +|.+.+..
T Consensus       148 s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P---v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P  222 (433)
T KOG0268|consen  148 SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP---VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP  222 (433)
T ss_pred             ccccccccccccccccccCc--eeeecccccCCc---cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence            88999998888889999875  599999976665   558888888999999999   444333        88888775


Q ss_pred             cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                      .....+.+  .-.. .+|+|++-.|++|+.|..++.||+|  ... ++..+.+|.+.|..  ++|+|.|+-+++||.|.+
T Consensus       223 l~KVi~~m--RTN~-IswnPeafnF~~a~ED~nlY~~DmR--~l~~p~~v~~dhvsAV~d--VdfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  223 LKKVILTM--RTNT-ICWNPEAFNFVAANEDHNLYTYDMR--NLSRPLNVHKDHVSAVMD--VDFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             cceeeeec--cccc-eecCccccceeeccccccceehhhh--hhcccchhhcccceeEEE--eccCCCcchhccccccce
Confidence            54333333  2222 4678899999999999999999999  433 88899999998755  999999999999999999


Q ss_pred             EEEEeCCCCeEEEEec-CCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          445 LRIWSIRSGELVFEDK-FSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |+||.+..++---.+- -....|.+|.|+.+..++++++.+-.
T Consensus       296 IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n  338 (433)
T KOG0268|consen  296 IRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN  338 (433)
T ss_pred             EEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence            9999998876443321 12355999999999888887776644

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.80  E-value=3.1e-18  Score=176.55  Aligned_cols=203  Identities=10%  Similarity=0.135  Sum_probs=150.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEe---CCeEEEEECCCC------------cEEE-EeeeCCCeEEEEEecCCcEEEEEeCCCe
Q 037288          256 KCTVWTADFCTNPSQAVIGT---NLGAAMVDMETG------------MASW-VCRSKSDILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~------------~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~dg~  319 (513)
                      +..|.+++.+|+|..+|+|+   |++++||+.+.-            +.+. ...|.+.|.|+.|+|||.+||+|+.|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            45799999999999999987   566889976421            1122 2238889999999999999999999999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee-EeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH-TTFMPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      |.||+........ +..-.+-...+..           |       +... ...|+..|..+ .|+|++.+|++++.|++
T Consensus        93 v~iW~~~~~~~~~-~fgs~g~~~~vE~-----------w-------k~~~~l~~H~~DV~Dv-~Wsp~~~~lvS~s~Dns  152 (942)
T KOG0973|consen   93 VMIWERAEIGSGT-VFGSTGGAKNVES-----------W-------KVVSILRGHDSDVLDV-NWSPDDSLLVSVSLDNS  152 (942)
T ss_pred             EEEeeecccCCcc-cccccccccccce-----------e-------eEEEEEecCCCcccee-ccCCCccEEEEecccce
Confidence            9999987411000 0000000000000           0       0011 11244455554 67889999999999999


Q ss_pred             EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC------CCCeEEEEEc
Q 037288          399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS------NSVPSAVCWR  472 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~------~~~v~~v~~~  472 (513)
                      |.+||.+  ....+..+++|...|..  +.|+|-|+||++=+.|++|+||++.+....+.+..+      ..-+..+.|+
T Consensus       153 Viiwn~~--tF~~~~vl~~H~s~VKG--vs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  153 VIIWNAK--TFELLKVLRGHQSLVKG--VSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             EEEEccc--cceeeeeeecccccccc--eEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence            9999998  55689999999999988  999999999999999999999998887777765433      3357889999


Q ss_pred             CCCceEEeeC
Q 037288          473 TQRSMGPQIE  482 (513)
Q Consensus       473 p~~~~~~t~~  482 (513)
                      |++.++++..
T Consensus       229 PDG~~las~n  238 (942)
T KOG0973|consen  229 PDGHHLASPN  238 (942)
T ss_pred             CCcCeecchh
Confidence            9999888765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.3e-18  Score=150.76  Aligned_cols=199  Identities=12%  Similarity=0.106  Sum_probs=160.6

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcE---E-EEeeeCCCeEEEEEec--CCcEEEEEeCCCeEEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMA---S-WVCRSKSDILAQQVIH--SGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~---~-~~~~~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd  324 (513)
                      -..|.+.|.++...--|..||++ +|++|+|+.++.+..   + .+..|.++|.-++|..  .|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            45788999998888889999987 566799999876542   2 2334999999999986  789999999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                      -.+++... ......|...|++|+|.|                                +..|-.|++++.||.|.+.+.
T Consensus        87 e~~g~w~k-~~e~~~h~~SVNsV~wap--------------------------------heygl~LacasSDG~vsvl~~  133 (299)
T KOG1332|consen   87 EENGRWTK-AYEHAAHSASVNSVAWAP--------------------------------HEYGLLLACASSDGKVSVLTY  133 (299)
T ss_pred             cCCCchhh-hhhhhhhcccceeecccc--------------------------------cccceEEEEeeCCCcEEEEEE
Confidence            98887655 667788999999988854                                345778999999999999999


Q ss_pred             CCCCcc--ceEEecCCCCceeEEEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCCe--EEEEecCCCCCe
Q 037288          405 RLTTRG--AVQSYEGHVNSHTRIQLGVDQS---E-----------RFVMSGGEDCKLRIWSIRSGE--LVFEDKFSNSVP  466 (513)
Q Consensus       405 ~~~~~~--~~~~~~~h~~~v~~~~~~~s~~---g-----------~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~~~v  466 (513)
                      +.. ..  ..+....|.-.|..  ++|.|.   |           +.|++||.|..|+||+..+++  .-.++..|...|
T Consensus       134 ~~~-g~w~t~ki~~aH~~Gvns--Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV  210 (299)
T KOG1332|consen  134 DSS-GGWTTSKIVFAHEIGVNS--VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV  210 (299)
T ss_pred             cCC-CCccchhhhhccccccce--eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence            832 12  34455789888877  777774   4           569999999999999998864  334488999999


Q ss_pred             EEEEEcCC----CceEEeeCCCee
Q 037288          467 SAVCWRTQ----RSMGPQIEGKIH  486 (513)
Q Consensus       467 ~~v~~~p~----~~~~~t~~~~~~  486 (513)
                      +.++|.|.    ...+|+++.|-.
T Consensus       211 RDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  211 RDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             hhhhhccccCCCceeeEEecCCCc
Confidence            99999998    357888888766

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.79  E-value=2.4e-18  Score=162.91  Aligned_cols=197  Identities=11%  Similarity=0.140  Sum_probs=153.9

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc---EEEEe---eeCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM---ASWVC---RSKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~---~~~~~---~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      ....|..-|.+++++...+.+.+|+.+.|+|||+....   ++..+   ....-|.++...|||+.|++|+.-.++.|||
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            45679999999999999999999999999999997542   23222   2445699999999999999999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                      +....... -..+....-.                                  +-..+.+||.+...++..||.|.|||+
T Consensus       494 LAapTpri-kaeltssapa----------------------------------CyALa~spDakvcFsccsdGnI~vwDL  538 (705)
T KOG0639|consen  494 LAAPTPRI-KAELTSSAPA----------------------------------CYALAISPDAKVCFSCCSDGNIAVWDL  538 (705)
T ss_pred             ccCCCcch-hhhcCCcchh----------------------------------hhhhhcCCccceeeeeccCCcEEEEEc
Confidence            98775421 0011111111                                  112467889999999999999999999


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE--------------------------
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE--------------------------  458 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~--------------------------  458 (513)
                      +  ....++.|+||.+...+  +.+++||..|.+||.|++|+.||++++..+..                          
T Consensus       539 h--nq~~VrqfqGhtDGasc--Idis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens  614 (705)
T KOG0639|consen  539 H--NQTLVRQFQGHTDGASC--IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS  614 (705)
T ss_pred             c--cceeeecccCCCCCcee--EEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC
Confidence            8  55589999999999988  78899999999999999999999987653321                          


Q ss_pred             --------------ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          459 --------------DKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       459 --------------~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                                    +..|++.|.++.|.+.+..|++.+.|-.
T Consensus       615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl  656 (705)
T KOG0639|consen  615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  656 (705)
T ss_pred             cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh
Confidence                          2334677888888888888888777744

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.79  E-value=2.6e-17  Score=155.70  Aligned_cols=209  Identities=13%  Similarity=0.155  Sum_probs=166.1

Q ss_pred             ccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCC
Q 037288          219 SETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKS  297 (513)
Q Consensus       219 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~  297 (513)
                      ++...|++.+|++...            -+...+.+|+..|+++.++....+||++++++ |.|..+.++.....+.+.+
T Consensus        96 sgG~~~~Vkiwdl~~k------------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s  163 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRAK------------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS  163 (673)
T ss_pred             ccCcCceeeehhhHHH------------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence            4456677777776622            22345889999999999999999999999887 9999999998777777663


Q ss_pred             -C-eEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          298 -D-ILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       298 -~-V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                       . |.-+.|++.. .+|.+++.+|.|.+||+....+.  +.-...|..|...|+|+|                       
T Consensus       164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~--~~~~~~HsAP~~gicfsp-----------------------  218 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI--FHASEAHSAPCRGICFSP-----------------------  218 (673)
T ss_pred             CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc--cchhhhccCCcCcceecC-----------------------
Confidence             3 7789999977 57888899999999999877654  345677888888877755                       


Q ss_pred             CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-C
Q 037288          375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-G  453 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~  453 (513)
                                .+..+|++.++|..|.+||++  .......+. ...+...  ++|.++|.+|++|...|.|..||++. .
T Consensus       219 ----------sne~l~vsVG~Dkki~~yD~~--s~~s~~~l~-y~~Plst--vaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  219 ----------SNEALLVSVGYDKKINIYDIR--SQASTDRLT-YSHPLST--VAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             ----------CccceEEEecccceEEEeecc--cccccceee-ecCCcce--eeecCCceEEEeecCCceEEEEecccCC
Confidence                      367788999999999999998  444444443 2223334  89999999999999999999999986 4


Q ss_pred             eEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          454 ELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       454 ~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                      .++.++..|...|++++|-|...++.
T Consensus       284 ~Pv~v~sah~~sVt~vafq~s~tvlt  309 (673)
T KOG4378|consen  284 APVAVRSAHDASVTRVAFQPSPTVLT  309 (673)
T ss_pred             CCceEeeecccceeEEEeeecceeee
Confidence            58888889999999999998874443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=3.1e-18  Score=166.96  Aligned_cols=198  Identities=18%  Similarity=0.156  Sum_probs=159.3

Q ss_pred             eeEEeccccCcEEEEEE-cCCCCEEEEEe-CCeEEEEECCCCcE--EEEe----------eeCCCeEEEEEecCCcEEEE
Q 037288          248 TMHLVASFKCTVWTADF-CTNPSQAVIGT-NLGAAMVDMETGMA--SWVC----------RSKSDILAQQVIHSGNVVLC  313 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~-s~~g~~l~s~s-~~~i~vwd~~~~~~--~~~~----------~~~~~V~~l~~~~~~~~l~s  313 (513)
                      ++.++..|++-|.|+++ -++..++|+|+ |+.|.+||++++..  +..+          ++...|++++-++.|.+|++
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            56779999999999999 77888888886 55699999998732  1111          35667999999999999999


Q ss_pred             EeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288          314 GFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       314 g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  393 (513)
                      |+..+.+++||.++.+...   .+.||+..|..+                                  ..+.+|..++++
T Consensus       189 Ggtek~lr~wDprt~~kim---kLrGHTdNVr~l----------------------------------l~~dDGt~~ls~  231 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVL----------------------------------LVNDDGTRLLSA  231 (735)
T ss_pred             cCcccceEEecccccccee---eeeccccceEEE----------------------------------EEcCCCCeEeec
Confidence            9999999999999998754   888999998883                                  556799999999


Q ss_pred             ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          394 SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       394 s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                      +.||+|++||++  ...++.++..|...|..  +..+|+=.++++|+.||.|..=|+++......+-..+.+|..+..+.
T Consensus       232 sSDgtIrlWdLg--qQrCl~T~~vH~e~VWa--L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~  307 (735)
T KOG0308|consen  232 SSDGTIRLWDLG--QQRCLATYIVHKEGVWA--LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE  307 (735)
T ss_pred             CCCceEEeeecc--ccceeeeEEeccCceEE--EeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc
Confidence            999999999998  67799999999999766  77789999999999999999999998432222222355666666652


Q ss_pred             --CCceEEeeCCCee
Q 037288          474 --QRSMGPQIEGKIH  486 (513)
Q Consensus       474 --~~~~~~t~~~~~~  486 (513)
                        +...++|...++.
T Consensus       308 ~~~~~WvtTtds~I~  322 (735)
T KOG0308|consen  308 HDNSVWVTTTDSSIK  322 (735)
T ss_pred             ccCCceeeeccccce
Confidence              3446666666666

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=8.4e-19  Score=181.49  Aligned_cols=226  Identities=17%  Similarity=0.183  Sum_probs=166.9

Q ss_pred             eccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEEeCCe-EEEEECCCCcEEEEe
Q 037288          216 SLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIGTNLG-AAMVDMETGMASWVC  293 (513)
Q Consensus       216 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s~~~-i~vwd~~~~~~~~~~  293 (513)
                      +..++..+|.+.+|+...-      ..-.....+.....|++.|..++|++... +||+|++++ |.|||+...+.-...
T Consensus        82 lIaGG~edG~I~ly~p~~~------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~  155 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASI------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP  155 (1049)
T ss_pred             eeeccccCCceEEecchhh------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence            3446678999999987642      11112223555778999999999999655 999997655 999999875433323


Q ss_pred             ---eeCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCc--CeEEEeeCCeEEEeEeecccCcccc
Q 037288          294 ---RSKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI--PYSRLQRNDRVTNEQWFELKANIWP  367 (513)
Q Consensus       294 ---~~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~s~~w~~~~~~~~~  367 (513)
                         ...+.|.+++|+.. .++|++++.+|.+.|||+|..+.+.   .+..|..  .+..+.|+|                
T Consensus       156 ~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii---~ls~~~~~~~~S~l~WhP----------------  216 (1049)
T KOG0307|consen  156 GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII---KLSDTPGRMHCSVLAWHP----------------  216 (1049)
T ss_pred             CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc---ccccCCCccceeeeeeCC----------------
Confidence               24567999999964 4789999999999999999886533   4444433  334444433                


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCC
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDC  443 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg  443 (513)
                                       .+...+++++.|   -.|.+||+|. ...+++++++|...+..  +.|.+.+ .+|++++.|+
T Consensus       217 -----------------~~aTql~~As~dd~~PviqlWDlR~-assP~k~~~~H~~Gils--lsWc~~D~~lllSsgkD~  276 (1049)
T KOG0307|consen  217 -----------------DHATQLLVASGDDSAPVIQLWDLRF-ASSPLKILEGHQRGILS--LSWCPQDPRLLLSSGKDN  276 (1049)
T ss_pred             -----------------CCceeeeeecCCCCCceeEeecccc-cCCchhhhcccccceee--eccCCCCchhhhcccCCC
Confidence                             234456666654   4599999994 23389999999999866  8888866 8999999999


Q ss_pred             cEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288          444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      .|.+|+..+++.+..+......+..+.|+|. ..+++...-+-+
T Consensus       277 ~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  277 RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence            9999999999999999888999999999998 335555544433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=3.6e-18  Score=155.83  Aligned_cols=177  Identities=11%  Similarity=0.130  Sum_probs=136.5

Q ss_pred             cccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC
Q 037288          241 FSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG  318 (513)
Q Consensus       241 ~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg  318 (513)
                      |......++..+.--.+.|.++.|+|... .|++| +|++|.|||++++.++...-....-..|+|+|.+-.+.+|..|.
T Consensus       172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~  251 (433)
T KOG0268|consen  172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH  251 (433)
T ss_pred             cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence            33333334455566667899999999554 66666 78889999999999888777777788999999888899999999


Q ss_pred             eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          319 AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       319 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      .++.||++..+. + +....+|..+|.+++|                                  +|.|+-|++||.|.+
T Consensus       252 nlY~~DmR~l~~-p-~~v~~dhvsAV~dVdf----------------------------------sptG~EfvsgsyDks  295 (433)
T KOG0268|consen  252 NLYTYDMRNLSR-P-LNVHKDHVSAVMDVDF----------------------------------SPTGQEFVSGSYDKS  295 (433)
T ss_pred             cceehhhhhhcc-c-chhhcccceeEEEecc----------------------------------CCCcchhccccccce
Confidence            999999998764 2 6788888888888665                                  558999999999999


Q ss_pred             EEEEecCCCCccceEEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          399 VKLYDHRLTTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      |+||..+  ....--.|. --...|  +++.||.|.+++++||.|+.|++|.....+.+.
T Consensus       296 IRIf~~~--~~~SRdiYhtkRMq~V--~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  296 IRIFPVN--HGHSRDIYHTKRMQHV--FCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEEeecC--CCcchhhhhHhhhhee--eEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            9999987  322211121 011234  448999999999999999999999876655443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.78  E-value=2.7e-18  Score=159.11  Aligned_cols=226  Identities=14%  Similarity=0.074  Sum_probs=179.8

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc--EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM--ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~--~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      ....+..|.+.|..+.|-++...|++|+ |..|++|++..++  .+.++. ..+.|++++|.+++..+++++.|+.+++|
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence            4556889999999999999988888775 5559999988766  333333 55679999999999999999999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  393 (513)
                      ++.+.+.   ..+|.+|.+.|+++.|..   .+++|+       ||+......  +++...+.+..+++   .+..+++|
T Consensus       247 nvd~~r~---~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~--kt~l~~S~cnDI~~---~~~~~~Sg  318 (459)
T KOG0288|consen  247 NVDSLRL---RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS--KTVLPGSQCNDIVC---SISDVISG  318 (459)
T ss_pred             eccchhh---hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee--ccccccccccceEe---cceeeeec
Confidence            9999886   449999999999999977   688888       888875532  33333333333322   26678899


Q ss_pred             ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC----CCCeEEE
Q 037288          394 SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS----NSVPSAV  469 (513)
Q Consensus       394 s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~----~~~v~~v  469 (513)
                      ..|++|++||+|  ...+..+...+. .|+.  +..+++|..|++++.|.++.+.|+++.+....+...    .+..+.+
T Consensus       319 H~DkkvRfwD~R--s~~~~~sv~~gg-~vtS--l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  319 HFDKKVRFWDIR--SADKTRSVPLGG-RVTS--LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV  393 (459)
T ss_pred             ccccceEEEecc--CCceeeEeecCc-ceee--EeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence            999999999998  555777777665 6777  777889999999999999999999999988876433    3448999


Q ss_pred             EEcCCCceEEeeCCCee
Q 037288          470 CWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       470 ~~~p~~~~~~t~~~~~~  486 (513)
                      +|+|++.++++++.|-.
T Consensus       394 vfSpd~~YvaAGS~dgs  410 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGS  410 (459)
T ss_pred             EECCCCceeeeccCCCc
Confidence            99999999888887754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=3.2e-17  Score=147.04  Aligned_cols=196  Identities=16%  Similarity=0.177  Sum_probs=155.3

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ++..+.+|...|.+++|-..|+.+++++ |.+..+||+++|..+..+. |....+.++-+|..+++++++.|.+.++||+
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF  343 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF  343 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence            4667899999999999999999999886 6779999999999887765 8888999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      +..  ++.+..|.+|...|+++.|+                                   -+..+++|+.|.+|++||++
T Consensus       344 Rea--I~sV~VFQGHtdtVTS~vF~-----------------------------------~dd~vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  344 REA--IQSVAVFQGHTDTVTSVVFN-----------------------------------TDDRVVSGSDDRTVKVWDLR  386 (481)
T ss_pred             hhh--cceeeeecccccceeEEEEe-----------------------------------cCCceeecCCCceEEEeeec
Confidence            933  33377899999999986552                                   35678999999999999998


Q ss_pred             CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE----ecCCCCCeEEEEEcCCC--ceEE
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE----DKFSNSVPSAVCWRTQR--SMGP  479 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~----~~~~~~~v~~v~~~p~~--~~~~  479 (513)
                      .+ ..++.++.. ..++..  ++++..+..|+.--.+..|++||+....+.+-    -.+|...|++++|..+.  .-+.
T Consensus       387 NM-RsplATIRt-dS~~NR--vavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf  462 (481)
T KOG0300|consen  387 NM-RSPLATIRT-DSPANR--VAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF  462 (481)
T ss_pred             cc-cCcceeeec-CCccce--eEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccc
Confidence            32 237777763 334444  66777788888888899999999976553332    35677889999999773  2344


Q ss_pred             eeCCC
Q 037288          480 QIEGK  484 (513)
Q Consensus       480 t~~~~  484 (513)
                      +++-|
T Consensus       463 tcGFD  467 (481)
T KOG0300|consen  463 TCGFD  467 (481)
T ss_pred             ccccc
Confidence            44433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.77  E-value=3.4e-17  Score=160.97  Aligned_cols=249  Identities=14%  Similarity=0.161  Sum_probs=186.9

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEE---EeeeCCCeEE-EEEec-CCcEEEEEeCCCeEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASW---VCRSKSDILA-QQVIH-SGNVVLCGFRNGAIVT  322 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~---~~~~~~~V~~-l~~~~-~~~~l~sg~~dg~i~i  322 (513)
                      ...+.+|...|..++..+.. .+++++ |+++++|+-..++.+.   ...+.+-|.+ +++.+ ++-.+++|+.|.+|.+
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence            35689999999999986655 455555 6779999987665433   2335555555 77775 4456999999999999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCC--eEEEeEeecccCcccc----eeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQWFELKANIWP----SHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~w~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      |.+.+..+   +..+.+|...|.+++...  .+++|+||........    .....|...|-.+..++.+  .++||+.|
T Consensus        86 ~~~~~~~P---~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaD  160 (745)
T KOG0301|consen   86 FKLSQAEP---LYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN--TYVTGSAD  160 (745)
T ss_pred             EecCCCCc---hhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC--cEEeccCc
Confidence            99988876   559999999999999665  7799999865432221    1234567778887777643  89999999


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      .+|++|.-    ...+++|.+|.+.|..  +++-+++ .+++++.||.|++|++ +|+.+.+..+|.+-|.++....+..
T Consensus       161 KtIklWk~----~~~l~tf~gHtD~VRg--L~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~  232 (745)
T KOG0301|consen  161 KTIKLWKG----GTLLKTFSGHTDCVRG--LAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG  232 (745)
T ss_pred             ceeeeccC----Cchhhhhccchhheee--eEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC
Confidence            99999984    4589999999999988  6665554 5789999999999998 8899999999999999999777767


Q ss_pred             eEEeeCCCeeeeec----------cCCcccce--------eeeeeccceeeee
Q 037288          477 MGPQIEGKIHEEFD----------LGQRHSWE--------AWIGTQEGLFRMN  511 (513)
Q Consensus       477 ~~~t~~~~~~~~~~----------~~~~~~~~--------~~~gs~~g~~~~~  511 (513)
                      .++|++.|-.-+++          .-...-|+        -.+|.-||..|+.
T Consensus       233 ~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf  285 (745)
T KOG0301|consen  233 LIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF  285 (745)
T ss_pred             eEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence            77777766552111          11222343        3468899988863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.76  E-value=3.3e-17  Score=159.62  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=144.7

Q ss_pred             EeccccCcEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCcE-------EEE---------------------eeeCCCeE
Q 037288          251 LVASFKCTVWTADFCTNP-SQAVIGT-NLGAAMVDMETGMA-------SWV---------------------CRSKSDIL  300 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g-~~l~s~s-~~~i~vwd~~~~~~-------~~~---------------------~~~~~~V~  300 (513)
                      .+.||...|.+++|.+.. ..+++|+ |+.|.|||++....       ...                     ..+...|.
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence            488999999999999954 5777886 45599999864310       000                     00223344


Q ss_pred             E---EEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288          301 A---QQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS  376 (513)
Q Consensus       301 ~---l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~  376 (513)
                      +   +-+..|...||+++. |+.|+|||++.............+.-+                        .+ -+..-.
T Consensus       219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~------------------------t~-skrs~G  273 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP------------------------TH-SKRSVG  273 (720)
T ss_pred             eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc------------------------Cc-ccceee
Confidence            4   445578888888888 999999999987643211111111000                        00 000112


Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-E
Q 037288          377 ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-L  455 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~  455 (513)
                      ++++ .....|.+|.+.+.|+.|.+||++.....++..+.++...-....-..+|++.+|++|+.|...++|.+.+.+ .
T Consensus       274 ~~nL-~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~  352 (720)
T KOG0321|consen  274 QVNL-ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP  352 (720)
T ss_pred             eEEE-EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence            3333 4556678888888899999999986555688888888776555556779999999999999999999998865 4


Q ss_pred             EEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288          456 VFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       456 ~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      ...+.+|.-.|++++|.|. -.-++|+..|..
T Consensus       353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~  384 (720)
T KOG0321|consen  353 PALLLGHTREVTTVRWLPSATTPVATCSDDFR  384 (720)
T ss_pred             hhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence            4457788889999999998 344555566655

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.76  E-value=1.8e-17  Score=162.95  Aligned_cols=194  Identities=12%  Similarity=0.104  Sum_probs=150.6

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEec---CCcEEEEEeCCCeEEEEECC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIH---SGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~---~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +..-...+.+++.+|+|++||+|..+ .++|+++..-+...++. |.+.|.|+.|+.   ..++||++++|..|.|||+.
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            34445689999999999999999655 49999998877665555 899999999984   23799999999999999996


Q ss_pred             CCccccccccccccCcCeEEEeeCC-----eEEEeE--------------------------------------------
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ--------------------------------------------  357 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~--------------------------------------------  357 (513)
                      ..-. . ++++.+|...|++|.|.-     ++++++                                            
T Consensus       535 rny~-l-~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  535 RNYD-L-VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccc-h-hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            5432 2 679999999999998854     444443                                            


Q ss_pred             ----------eecccCcccceeEeec--CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEE
Q 037288          358 ----------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI  425 (513)
Q Consensus       358 ----------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~  425 (513)
                                |+...++......-.+  .+.... +.+.|.|.|+++...|.++.++|.-  ...++..+.||...|+. 
T Consensus       613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK-v~lDPSgiY~atScsdktl~~~Df~--sgEcvA~m~GHsE~VTG-  688 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-VILDPSGIYLATSCSDKTLCFVDFV--SGECVAQMTGHSEAVTG-  688 (1080)
T ss_pred             EEecccceEEEeccccceeeeecccccCCCceEE-EEECCCccEEEEeecCCceEEEEec--cchhhhhhcCcchheee-
Confidence                      2222222211111111  123333 3678999999999999999999997  66699999999999999 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          426 QLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                       +.|.+|.++|++.+.||.|.||.+..
T Consensus       689 -~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  689 -VKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             -eeecccchhheeecCCceEEEEECch
Confidence             88999999999999999999998853

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-16  Score=143.86  Aligned_cols=232  Identities=13%  Similarity=0.140  Sum_probs=154.2

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCc-----EEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGM-----ASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVT  322 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~-----~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~i  322 (513)
                      ..+++|.+.|++++|+.||++||++++ +.|++|+++.-.     +++..-.-+.-+.+.|+||-. ++++.-...++++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            448999999999999999999998855 559999987642     111111122468899999984 5566666778999


Q ss_pred             EECCCCcccc---cccc------ccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEE
Q 037288          323 VDVRKRQRGC---SSRA------GRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSL  383 (513)
Q Consensus       323 wd~~~~~~~~---~~~~------~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~  383 (513)
                      |.+...+...   ....      -.-|...+..+....   .+.+++       |++. |+...  .+.....-....+.
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~--~idtnq~~n~~aav  236 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ--SIDTNQSSNYDAAV  236 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee--eeccccccccceee
Confidence            9775433211   0000      112344444444433   455555       8877 54332  22222222334678


Q ss_pred             cCCCCEEEEEecCCeEEEEecCCCCcc------ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----
Q 037288          384 QLYDQYFLASSMDGTVKLYDHRLTTRG------AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-----  452 (513)
Q Consensus       384 ~~~~~~l~s~s~dg~i~lwd~~~~~~~------~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-----  452 (513)
                      +|+|+++++++..-.|++|.+-....+      .+..++||...|..  ++|+++...+++.+.||+++|||+.-     
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~--~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA--AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee--eeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            999999999999999999987543333      45678999999877  99999999999999999999999742     


Q ss_pred             --CeEEEEe----cCCCCCeEEEEEcCCCceEE-eeCCCee
Q 037288          453 --GELVFED----KFSNSVPSAVCWRTQRSMGP-QIEGKIH  486 (513)
Q Consensus       453 --~~~~~~~----~~~~~~v~~v~~~p~~~~~~-t~~~~~~  486 (513)
                        .+.+.+.    ...++....++.+|++..|| +.+.+++
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~  355 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLK  355 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceE
Confidence              2333332    12233345789999965554 4444544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=1.4e-16  Score=143.79  Aligned_cols=233  Identities=9%  Similarity=0.131  Sum_probs=159.5

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCC-CEEEEEeCCe-EEEEECCCCcEEEEee----e
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNP-SQAVIGTNLG-AAMVDMETGMASWVCR----S  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~s~s~~~-i~vwd~~~~~~~~~~~----~  295 (513)
                      ..|.+.+.++-+...            ...+.+|...|+.+.++|+. +++++++.+. |++||+++..++..+.    |
T Consensus       113 ~~GvIrVid~~~~~~------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH  180 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQC------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH  180 (385)
T ss_pred             ceeEEEEEecchhhh------------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc
Confidence            567777666654333            34589999999999999965 5777887665 9999999999999886    8


Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccce--eEeec
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPS--HTTFM  373 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~--~~~~~  373 (513)
                      ...|.+++|+++|..|++++.|.++++|++...+....+...         +.|++.-...-+. ......|.  .+--|
T Consensus       181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s---------~~~~~~~t~~pfp-t~~~~fp~fst~diH  250 (385)
T KOG1034|consen  181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS---------ITYSPNKTTRPFP-TPKTHFPDFSTTDIH  250 (385)
T ss_pred             cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh---------cccCCCCccCcCC-ccccccccccccccc
Confidence            889999999999999999999999999999855421101100         1111100000000 00000011  12234


Q ss_pred             CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC---------Ccc---ceEEecCCCCceeEEEEEEcCCCCEEEEEeC
Q 037288          374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT---------TRG---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE  441 (513)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~---------~~~---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~  441 (513)
                      ...|.|+.+|   |+++++-+-++.|..|.....         ...   .+..+.-....+..+.++|+|-+++|+.|.+
T Consensus       251 rnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  251 RNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             cchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence            5566666665   688999898999999987211         111   3455555666777888999999999999999


Q ss_pred             CCcEEEEeCCCCeEEE--EecC--CCCCeEEEEEcCCCceEE
Q 037288          442 DCKLRIWSIRSGELVF--EDKF--SNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       442 Dg~v~vwd~~~~~~~~--~~~~--~~~~v~~v~~~p~~~~~~  479 (513)
                      .|.|++||++..++..  ++.+  ....|...+|+.++.+++
T Consensus       328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv  369 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV  369 (385)
T ss_pred             CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence            9999999999876532  2222  256799999999965433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=1.1e-16  Score=150.43  Aligned_cols=232  Identities=12%  Similarity=0.068  Sum_probs=163.4

Q ss_pred             eEEeccccCcEEEEEEcCCCC--EEEEEeC-CeEEEEECCCCc-----EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCe
Q 037288          249 MHLVASFKCTVWTADFCTNPS--QAVIGTN-LGAAMVDMETGM-----ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGA  319 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~--~l~s~s~-~~i~vwd~~~~~-----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~  319 (513)
                      .....-|.+.|.+++|+|...  ++|+|.. |+|-+||+.+.+     ......|..+|.++.|+|.. ..+++.+.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            344677889999999999544  5666654 449999996332     33344588889999999966 78999999999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCE
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQY  389 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  389 (513)
                      |++-|+....... +-.+......+..++|+.   .++.+.       ||.+.+.-......-|...|.++...+-...+
T Consensus       259 iR~~D~~~~i~e~-v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~  337 (498)
T KOG4328|consen  259 IRLQDFEGNISEE-VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF  337 (498)
T ss_pred             eeeeeecchhhHH-HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence            9999998775433 334444566777888876   455544       66666553322233344477777555556788


Q ss_pred             EEEEecCCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEecCCC
Q 037288          390 FLASSMDGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR----SGELVFEDKFSN  463 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~----~~~~~~~~~~~~  463 (513)
                      ||+++.|++++|||+|....+  ++.....|...|..  ..|||++..|++.+.|+.|+|||..    .-+++.++.+..
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~s--AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~  415 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNS--AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN  415 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecccccceeee--eEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence            999999999999999954433  23444568888877  8999998889999999999999983    344444544322


Q ss_pred             ---C--CeEEEEEcCCCceEEeeCC
Q 037288          464 ---S--VPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       464 ---~--~v~~v~~~p~~~~~~t~~~  483 (513)
                         .  .....+|.|+..+++....
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             cccccccchhheeCCCccEEEEecc
Confidence               1  1345689998666665443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.8e-16  Score=152.68  Aligned_cols=266  Identities=17%  Similarity=0.142  Sum_probs=185.0

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      .+.|+.+-.+|.|.||++....   .....++         .  .+.+.+...+|.+.+..+                  
T Consensus        37 S~~lAvsRt~g~IEiwN~~~~w---~~~~vi~---------g--~~drsIE~L~W~e~~RLF------------------   84 (691)
T KOG2048|consen   37 SNQLAVSRTDGNIEIWNLSNNW---FLEPVIH---------G--PEDRSIESLAWAEGGRLF------------------   84 (691)
T ss_pred             CCceeeeccCCcEEEEccCCCc---eeeEEEe---------c--CCCCceeeEEEccCCeEE------------------
Confidence            3459999999999999985543   2112211         1  223347778886441111                  


Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAM  281 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~v  281 (513)
                                      +...+|.+.-|++.+....            ..+....++||+++.+|.+..++.|+|++ +..
T Consensus        85 ----------------S~g~sg~i~EwDl~~lk~~------------~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~  136 (691)
T KOG2048|consen   85 ----------------SSGLSGSITEWDLHTLKQK------------YNIDSNGGAIWSIAINPENTILAIGCDDGVLYD  136 (691)
T ss_pred             ----------------eecCCceEEEEecccCcee------------EEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence                            1124677777887755444            33666778999999999999999998777 455


Q ss_pred             EECCCCcEEEE---eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc--ccccCcCeEEEeeCCeEEEe
Q 037288          282 VDMETGMASWV---CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA--GRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       282 wd~~~~~~~~~---~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~s~  356 (513)
                      ++...+.....   .+.++.|.+++|+|++..|++|+.||.|++||...+.... +.+  +.+-...=..+         
T Consensus       137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~i---------  206 (691)
T KOG2048|consen  137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTI---------  206 (691)
T ss_pred             EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-EeeecccccccCCceE---------
Confidence            56666554322   2256889999999999999999999999999999887543 111  00000000011         


Q ss_pred             EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEE
Q 037288          357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV  436 (513)
Q Consensus       357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l  436 (513)
                                          +-++..+  ....+++|...|+|++||..  ....++.+..|...|.+  ++.++++..+
T Consensus       207 --------------------VWSv~~L--rd~tI~sgDS~G~V~FWd~~--~gTLiqS~~~h~adVl~--Lav~~~~d~v  260 (691)
T KOG2048|consen  207 --------------------VWSVLFL--RDSTIASGDSAGTVTFWDSI--FGTLIQSHSCHDADVLA--LAVADNEDRV  260 (691)
T ss_pred             --------------------EEEEEEe--ecCcEEEecCCceEEEEccc--CcchhhhhhhhhcceeE--EEEcCCCCeE
Confidence                                1222334  35578999999999999986  34488888999988866  8888999999


Q ss_pred             EEEeCCCcEEEEeCCCCeE----EEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          437 MSGGEDCKLRIWSIRSGEL----VFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       437 ~sg~~Dg~v~vwd~~~~~~----~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +++|.|+.|..+...+.+.    ......|...|.+++..++  .+.+++.|..
T Consensus       261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~  312 (691)
T KOG2048|consen  261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT  312 (691)
T ss_pred             EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence            9999999999998877643    2224567778999998888  6666676666

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.74  E-value=3.5e-15  Score=141.81  Aligned_cols=238  Identities=13%  Similarity=0.081  Sum_probs=175.6

Q ss_pred             CCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEEe---e--eCCCeEEEEEecCC
Q 037288          235 LDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLGAAMVDMETGMASWVC---R--SKSDILAQQVIHSG  308 (513)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~~---~--~~~~V~~l~~~~~~  308 (513)
                      +....+|.|+...........++.|..++|+| +.+++++++.+.+..|+.+.+......   +  .+.-|.|++|.++|
T Consensus       179 ~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng  258 (626)
T KOG2106|consen  179 PHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG  258 (626)
T ss_pred             ccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC
Confidence            34467788887766666777888999999999 555777888888999999988654433   2  23459999999998


Q ss_pred             cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE-------eecccCccc---------ceeE
Q 037288          309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANIW---------PSHT  370 (513)
Q Consensus       309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~---------~~~~  370 (513)
                      . +++|..+|.|.||+.+..+...   ...+|.+.|.++..-.  .+++|.       |+-.-....         +.++
T Consensus       259 d-viTgDS~G~i~Iw~~~~~~~~k---~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRt  334 (626)
T KOG2106|consen  259 D-VITGDSGGNILIWSKGTNRISK---QVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRT  334 (626)
T ss_pred             C-EEeecCCceEEEEeCCCceEEe---EeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeE
Confidence            7 5699999999999998776533   4449999999998876  777766       773222111         1111


Q ss_pred             eec------------------------------CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC
Q 037288          371 TFM------------------------------PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN  420 (513)
Q Consensus       371 ~~~------------------------------~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~  420 (513)
                      +..                              .+..-. .+.+|+.++|++++.|+.+++|+-    .+++-+.. -..
T Consensus       335 v~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg-la~hps~~q~~T~gqdk~v~lW~~----~k~~wt~~-~~d  408 (626)
T KOG2106|consen  335 VAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG-LATHPSKNQLLTCGQDKHVRLWND----HKLEWTKI-IED  408 (626)
T ss_pred             EecCCCcEEEeeccceEEEeeecCCceEEEEecccceee-EEcCCChhheeeccCcceEEEccC----CceeEEEE-ecC
Confidence            110                              001111 245778889999999999999992    33333322 123


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          421 SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       421 ~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +..+  ++|+|.| .|+.|...|...+.|.++..++..-.. ++++++++|+|++.++|-.+.|-+
T Consensus       409 ~~~~--~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  409 PAEC--ADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             ceeE--eeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence            3334  8999999 999999999999999999777776555 889999999999999999888877

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1e-16  Score=155.03  Aligned_cols=196  Identities=13%  Similarity=0.144  Sum_probs=153.0

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe----CCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT----NLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s----~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      +.....|...|..+.||..|.||++..    +..|.|.++.......-+ ..++.|.++.|+|....|++++. ..|+||
T Consensus       514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY  592 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY  592 (733)
T ss_pred             eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence            455678999999999999999999653    234899999877654444 46777999999999988888865 579999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      |+..+..   ++.+......|..++.+|   .++.++      |.-..-..++.+++.++..+..-+++++.-.+|++|+
T Consensus       593 dL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~s  669 (733)
T KOG0650|consen  593 DLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS  669 (733)
T ss_pred             ehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence            9987654   557778888999999999   777777      6555555556666766555444468888999999999


Q ss_pred             cCCeEEEEecCCC----Ccc---ceEEecCCCCc--eeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          395 MDGTVKLYDHRLT----TRG---AVQSYEGHVNS--HTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       395 ~dg~i~lwd~~~~----~~~---~~~~~~~h~~~--v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                      .||++.|+--+..    ++.   +++.+.+|...  ...+.+.|+|...||+++|.||+|++|
T Consensus       670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            9999999853321    222   67888899644  345678899999999999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.74  E-value=6.7e-15  Score=142.24  Aligned_cols=204  Identities=11%  Similarity=0.008  Sum_probs=139.6

Q ss_pred             EEEEEEcCCCCEEEEE-e-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC-eEEEEECCCCccccccc
Q 037288          259 VWTADFCTNPSQAVIG-T-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG-AIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~-s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~  335 (513)
                      +..++|+|+++.++++ . ++.+++||+.+++.+..+.+...+.+++|+|+|.+++++..++ .+.+||.++.....   
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~---  151 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD---  151 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE---
Confidence            4678999999977644 3 5669999999988777776556688999999999999888775 56778987765422   


Q ss_pred             cccccCcCeEEEeeCC---eEE-EeE-------eecccCcccceeEeecC----CC--ceEEEEEcCCCCEEEE-EecCC
Q 037288          336 AGRRHRIPYSRLQRND---RVT-NEQ-------WFELKANIWPSHTTFMP----SS--ISCLQSLQLYDQYFLA-SSMDG  397 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~---~~~-s~~-------w~~~~~~~~~~~~~~~~----~~--v~~~~~~~~~~~~l~s-~s~dg  397 (513)
                      .+. .......+.|++   .++ ++.       |+...++..........    ..  ... ..++++++++++ .+.++
T Consensus       152 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~s~dg~~~~~~~~~~~  229 (300)
T TIGR03866       152 NVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG-IKLTKDGKTAFVALGPAN  229 (300)
T ss_pred             EEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc-eEECCCCCEEEEEcCCCC
Confidence            221 223446788887   343 321       87776653322221110    11  122 357899998654 44567


Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                      .|.+||++  ....+..+. +...+..  ++|+|+|++|+++ +.+|.|.+||+.+++++..+... ...+.++++|
T Consensus       230 ~i~v~d~~--~~~~~~~~~-~~~~~~~--~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       230 RVAVVDAK--TYEVLDYLL-VGQRVWQ--LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             eEEEEECC--CCcEEEEEE-eCCCcce--EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            89999996  333444333 3334444  8899999999886 46899999999999999998764 4568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.73  E-value=8.3e-15  Score=139.32  Aligned_cols=270  Identities=13%  Similarity=0.109  Sum_probs=184.6

Q ss_pred             EEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccc-cCcEEEEEEcCCCCEE
Q 037288          193 IKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASF-KCTVWTADFCTNPSQA  271 (513)
Q Consensus       193 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~s~~g~~l  271 (513)
                      ++.+.+-...+.+||....++++..     .|++..|.+......       +..  ..+..+ +..|.|++|.++|+.+
T Consensus       196 vk~sne~v~~a~FHPtd~nliit~G-----k~H~~Fw~~~~~~l~-------k~~--~~fek~ekk~Vl~v~F~engdvi  261 (626)
T KOG2106|consen  196 VKTSNEVVFLATFHPTDPNLIITCG-----KGHLYFWTLRGGSLV-------KRQ--GIFEKREKKFVLCVTFLENGDVI  261 (626)
T ss_pred             ceeccceEEEEEeccCCCcEEEEeC-----CceEEEEEccCCceE-------EEe--eccccccceEEEEEEEcCCCCEE
Confidence            3444555567778888666655554     678888865432221       111  223332 2689999999999988


Q ss_pred             EEEeCCeEEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE----
Q 037288          272 VIGTNLGAAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR----  346 (513)
Q Consensus       272 ~s~s~~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~----  346 (513)
                      ..-+++.|.||+..+.+.... ..|++.|.++....+|.+|- |+.|..|..||-.-.+ .. -..++...++|+.    
T Consensus       262 TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k-~r-~~elPe~~G~iRtv~e~  338 (626)
T KOG2106|consen  262 TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK-LR-ETELPEQFGPIRTVAEG  338 (626)
T ss_pred             eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccc-cc-cccCchhcCCeeEEecC
Confidence            766888899999987764443 35889999999999998665 9999999999932221 11 1123333344433    


Q ss_pred             -----------------------------------EeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEE
Q 037288          347 -----------------------------------LQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQ  381 (513)
Q Consensus       347 -----------------------------------v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~  381 (513)
                                                         ++-+|   .+++++       |+  .  -++.-+.....++.|. 
T Consensus       339 ~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~--~k~~wt~~~~d~~~~~-  413 (626)
T KOG2106|consen  339 KGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D--HKLEWTKIIEDPAECA-  413 (626)
T ss_pred             CCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C--CceeEEEEecCceeEe-
Confidence                                               33333   334333       44  1  1122233334455554 


Q ss_pred             EEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEE-e
Q 037288          382 SLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFE-D  459 (513)
Q Consensus       382 ~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~-~  459 (513)
                      .|+|.| .+|.|+..|...+.|..   ...+.++.....++.+  +.|+|+|.+||.|+.|+.|+||-+.... .... -
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e---~~~lv~~~~d~~~ls~--v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~  487 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTE---TQDLVTIHTDNEQLSV--VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG  487 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecc---cceeEEEEecCCceEE--EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence            788999 99999999999999985   3433333333666666  8999999999999999999999987643 3322 3


Q ss_pred             cCCCCCeEEEEEcCCCceEEeeCCCeeeeec
Q 037288          460 KFSNSVPSAVCWRTQRSMGPQIEGKIHEEFD  490 (513)
Q Consensus       460 ~~~~~~v~~v~~~p~~~~~~t~~~~~~~~~~  490 (513)
                      +.+.++|+.+.|++++.++.+.+.|++-.|+
T Consensus       488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            4566999999999999999999999996554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.73  E-value=1.9e-16  Score=140.81  Aligned_cols=197  Identities=12%  Similarity=0.117  Sum_probs=144.4

Q ss_pred             EeccccCcEEEEEEcC-CCCEEEEE-eCCeEEEEECCCCc----------EEEEe------eeCCCeEEEEEec-CCcEE
Q 037288          251 LVASFKCTVWTADFCT-NPSQAVIG-TNLGAAMVDMETGM----------ASWVC------RSKSDILAQQVIH-SGNVV  311 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~-~g~~l~s~-s~~~i~vwd~~~~~----------~~~~~------~~~~~V~~l~~~~-~~~~l  311 (513)
                      ....|.+.|+++...+ .|+++++| +|+.|.+||++.-.          .....      .|+-.|.++.|-| |.-++
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3667899999999988 78999988 56669999997542          01111      1556799999998 55799


Q ss_pred             EEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288          312 LCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       312 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  391 (513)
                      .+++.|.++++||..+.+...   .+. -.+.|.+-+++|                               ....-.++|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp-------------------------------~a~sHcLiA  162 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSP-------------------------------MAMSHCLIA  162 (397)
T ss_pred             ecccccceEEEeecccceeeE---Eee-cCceeehhhcCh-------------------------------hhhcceEEE
Confidence            999999999999999876533   110 011122222211                               111245678


Q ss_pred             EEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCC-eEEEEe----------
Q 037288          392 ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERF-VMSGGEDCKLRIWSIRSG-ELVFED----------  459 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~-l~sg~~Dg~v~vwd~~~~-~~~~~~----------  459 (513)
                      +|..|-.|++.|+.  +....+++.||.+.|..  +.|+|...| |++|+.||.|++||++.. -+...+          
T Consensus       163 ~gtr~~~VrLCDi~--SGs~sH~LsGHr~~vla--V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~  238 (397)
T KOG4283|consen  163 AGTRDVQVRLCDIA--SGSFSHTLSGHRDGVLA--VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI  238 (397)
T ss_pred             EecCCCcEEEEecc--CCcceeeeccccCceEE--EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence            88999999999996  55589999999999855  999998766 578999999999999754 222222          


Q ss_pred             ----cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          460 ----KFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       460 ----~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                          ..|.+.|+++||..++..+++.+.|-.
T Consensus       239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ccccccccceeeeeeecccchhhhhccCccc
Confidence                345678999999999998888887766

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.4e-16  Score=147.22  Aligned_cols=233  Identities=12%  Similarity=0.146  Sum_probs=174.1

Q ss_pred             ccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC
Q 037288          188 SSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN  267 (513)
Q Consensus       188 s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~  267 (513)
                      +.|+|+++.+..          ..++++.     .+|.+.+|.++..     ..+     .++.+.--..+|.++.|.|+
T Consensus       214 ~~I~sv~FHp~~----------plllvaG-----~d~~lrifqvDGk-----~N~-----~lqS~~l~~fPi~~a~f~p~  268 (514)
T KOG2055|consen  214 GGITSVQFHPTA----------PLLLVAG-----LDGTLRIFQVDGK-----VNP-----KLQSIHLEKFPIQKAEFAPN  268 (514)
T ss_pred             CCceEEEecCCC----------ceEEEec-----CCCcEEEEEecCc-----cCh-----hheeeeeccCccceeeecCC
Confidence            446666654444          4444444     4788888887732     222     24455556689999999999


Q ss_pred             CC-EEEEEeCCe-EEEEECCCCcEEEEee---eC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccC
Q 037288          268 PS-QAVIGTNLG-AAMVDMETGMASWVCR---SK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHR  341 (513)
Q Consensus       268 g~-~l~s~s~~~-i~vwd~~~~~~~~~~~---~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~  341 (513)
                      |. .+++++... +..||+.+.+...+..   +. ..+.....++++++|+..+..|.|.+.-..+++.+.         
T Consensus       269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~---------  339 (514)
T KOG2055|consen  269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT---------  339 (514)
T ss_pred             CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh---------
Confidence            99 666666655 8999999887655433   33 247788899999999999999999998877776533         


Q ss_pred             cCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc
Q 037288          342 IPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS  421 (513)
Q Consensus       342 ~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~  421 (513)
                                                  .++..+.+..+ .|+.+++.|++++.+|.|.+||++  +..+++.+. ..+.
T Consensus       340 ----------------------------s~KieG~v~~~-~fsSdsk~l~~~~~~GeV~v~nl~--~~~~~~rf~-D~G~  387 (514)
T KOG2055|consen  340 ----------------------------SFKIEGVVSDF-TFSSDSKELLASGGTGEVYVWNLR--QNSCLHRFV-DDGS  387 (514)
T ss_pred             ----------------------------eeeeccEEeeE-EEecCCcEEEEEcCCceEEEEecC--CcceEEEEe-ecCc
Confidence                                        44445555554 556789999999999999999998  666888887 3455


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          422 HTRIQLGVDQSERFVMSGGEDCKLRIWSIRS------GELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       422 v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~------~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +....++.+++|.|||+|+..|.|.|||..+      .+++..+..-...|+.++|+++..++|-++....
T Consensus       388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k  458 (514)
T KOG2055|consen  388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK  458 (514)
T ss_pred             cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc
Confidence            6667789999999999999999999999653      4677777666778999999999877776666555

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.1e-15  Score=150.09  Aligned_cols=236  Identities=12%  Similarity=0.120  Sum_probs=174.2

Q ss_pred             cccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccc-cCcEEEEEEc
Q 037288          187 PSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASF-KCTVWTADFC  265 (513)
Q Consensus       187 ~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~s  265 (513)
                      |+.|.|+.++.+.          ..+     ..+.++|.+-+|++...-..           ...+.++ ...|-.++|+
T Consensus        25 Ps~I~slA~s~kS----------~~l-----AvsRt~g~IEiwN~~~~w~~-----------~~vi~g~~drsIE~L~W~   78 (691)
T KOG2048|consen   25 PSEIVSLAYSHKS----------NQL-----AVSRTDGNIEIWNLSNNWFL-----------EPVIHGPEDRSIESLAWA   78 (691)
T ss_pred             ccceEEEEEeccC----------Cce-----eeeccCCcEEEEccCCCcee-----------eEEEecCCCCceeeEEEc
Confidence            6778888887655          221     23457888888887742211           1224444 4689999999


Q ss_pred             CCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCe
Q 037288          266 TNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPY  344 (513)
Q Consensus       266 ~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  344 (513)
                      +.++++.++.++.|.-||+.++++...+. ..+.|++++.+|.+..++.|+.||.+..++...+.... -+.|...++.|
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~r~l~rq~sRv  157 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-KRSLMRQKSRV  157 (691)
T ss_pred             cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-EeecccccceE
Confidence            99999999999999999999999888777 44569999999999999999999988777777665433 22333334444


Q ss_pred             EEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE--Ee---cCCC
Q 037288          345 SRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ--SY---EGHV  419 (513)
Q Consensus       345 ~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~--~~---~~h~  419 (513)
                      .++                                  .|++++..+++|+.||.|++||...  ...+.  +.   ....
T Consensus       158 Lsl----------------------------------sw~~~~~~i~~Gs~Dg~Iriwd~~~--~~t~~~~~~~~d~l~k  201 (691)
T KOG2048|consen  158 LSL----------------------------------SWNPTGTKIAGGSIDGVIRIWDVKS--GQTLHIITMQLDRLSK  201 (691)
T ss_pred             EEE----------------------------------EecCCccEEEecccCceEEEEEcCC--CceEEEeeeccccccc
Confidence            443                                  5667899999999999999999963  22222  11   1112


Q ss_pred             -CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          420 -NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       420 -~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                       .++-.+++.|-.+ ..|++|..-|+|.+||...+.+++....|.+.|.+++-.++...+.+++.|-.
T Consensus       202 ~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  202 REPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK  268 (691)
T ss_pred             CCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence             3333455655544 47999999999999999999999999999999999999999776666666644

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=6.7e-16  Score=145.26  Aligned_cols=187  Identities=11%  Similarity=0.097  Sum_probs=144.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      ..+.....++++++|+..+..+ |.+.-..+++.+..+.-.+.|..+.|+.|+..|++.+.+|.|.+||++......   
T Consensus       304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~---  380 (514)
T KOG2055|consen  304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH---  380 (514)
T ss_pred             chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE---
Confidence            4677888999999999776554 999999999999999999999999999999999999999999999999885432   


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE-EEEEcCCCCEEEEEecCCeEEEEecCCC----Ccc
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC-LQSLQLYDQYFLASSMDGTVKLYDHRLT----TRG  410 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~s~dg~i~lwd~~~~----~~~  410 (513)
                                                        .+...+.+.. ..+.+.++.+||+|+..|.|.|||....    ..+
T Consensus       381 ----------------------------------rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  381 ----------------------------------RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             ----------------------------------EEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence                                              2222222211 1356789999999999999999996421    122


Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecCC---CCCeEEEEEcCCCceEEeeC
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE--DCKLRIWSIRSGELVFEDKFS---NSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~~t~~  482 (513)
                      ++.++..-...|+.  +.|++|..+|+.+|.  +..+++-.+.+......+...   -+.|++++|+|.+-++|-+.
T Consensus       427 Pik~~dNLtt~Its--l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  427 PIKTVDNLTTAITS--LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             chhhhhhhheeeee--eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            67777666667766  899999999877765  778999999888877766543   35599999999855555443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.72  E-value=5.7e-15  Score=148.30  Aligned_cols=296  Identities=15%  Similarity=0.122  Sum_probs=203.3

Q ss_pred             eeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCccc
Q 037288          124 DVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCA  203 (513)
Q Consensus       124 ~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~  203 (513)
                      +.++.|+..|.+.||++.+....     + .                            .-.+.+.|++|.-++..    
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~v-----~-~----------------------------f~~~~s~IT~ieqsPaL----  214 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKVV-----Y-T----------------------------FQEFFSRITAIEQSPAL----  214 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcEE-----E-E----------------------------ecccccceeEeccCCcc----
Confidence            57889999999999999554311     1 1                            01122555655543322    


Q ss_pred             cCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCE-EEEEeC-CeEEE
Q 037288          204 TDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQ-AVIGTN-LGAAM  281 (513)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~-l~s~s~-~~i~v  281 (513)
                            ..     ++.+..+|.+.++++......            ..++--.+.|..++|..||.. +|+|.. |.+.+
T Consensus       215 ------DV-----VaiG~~~G~ViifNlK~dkil------------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~  271 (910)
T KOG1539|consen  215 ------DV-----VAIGLENGTVIIFNLKFDKIL------------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF  271 (910)
T ss_pred             ------eE-----EEEeccCceEEEEEcccCcEE------------EEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence                  22     233446888888887743332            223333489999999999985 455544 55999


Q ss_pred             EECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc-cccccccCcCeEEEeeCC----eEE
Q 037288          282 VDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS-SRAGRRHRIPYSRLQRND----RVT  354 (513)
Q Consensus       282 wd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~----~~~  354 (513)
                      ||++..+.+....  |.+.|....|.|...++++++.|..+++|-.+++...+. ++.-.||..|..+|.|..    .++
T Consensus       272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il  351 (910)
T KOG1539|consen  272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL  351 (910)
T ss_pred             EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence            9999988777665  778899999999999999999999999886654443221 344567888777777653    222


Q ss_pred             EeE------------------------------------------------------------------------eeccc
Q 037288          355 NEQ------------------------------------------------------------------------WFELK  362 (513)
Q Consensus       355 s~~------------------------------------------------------------------------w~~~~  362 (513)
                      +.+                                                                        |+.+.
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            221                                                                        33322


Q ss_pred             CcccceeEeecC------CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe---cCCCCceeEEEEEEcCCC
Q 037288          363 ANIWPSHTTFMP------SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY---EGHVNSHTRIQLGVDQSE  433 (513)
Q Consensus       363 ~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~---~~h~~~v~~~~~~~s~~g  433 (513)
                      ... ..+.+...      ..+.+ ++.++.|++.+.|+..|.|-+|++.  +.-...+|   ..|..+|+.  ++.+.-+
T Consensus       432 ~~~-G~~~L~~~~~~~~~~~~~a-v~vs~CGNF~~IG~S~G~Id~fNmQ--SGi~r~sf~~~~ah~~~V~g--la~D~~n  505 (910)
T KOG1539|consen  432 KTS-GRHVLDPKRFKKDDINATA-VCVSFCGNFVFIGYSKGTIDRFNMQ--SGIHRKSFGDSPAHKGEVTG--LAVDGTN  505 (910)
T ss_pred             ccc-ccEEecCccccccCcceEE-EEEeccCceEEEeccCCeEEEEEcc--cCeeecccccCccccCceeE--EEecCCC
Confidence            211 11122111      23333 4678899999999999999999995  33356667   489999988  6777778


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeE-----------------------------------------EEEecCCCCCeEEEEEc
Q 037288          434 RFVMSGGEDCKLRIWSIRSGEL-----------------------------------------VFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       434 ~~l~sg~~Dg~v~vwd~~~~~~-----------------------------------------~~~~~~~~~~v~~v~~~  472 (513)
                      +.+++++.||.+++||.....+                                         ++.+.+|...|++++|+
T Consensus       506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS  585 (910)
T ss_pred             ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence            8999999999999999875542                                         22345678899999999


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      |++..+++...|-.
T Consensus       586 ~DgrWlisasmD~t  599 (910)
T KOG1539|consen  586 PDGRWLISASMDST  599 (910)
T ss_pred             CCCcEEEEeecCCc
Confidence            99998888888655

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.7e-16  Score=141.18  Aligned_cols=220  Identities=15%  Similarity=0.118  Sum_probs=154.0

Q ss_pred             EEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc
Q 037288          259 VWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  336 (513)
                      ..|+.|++.|.+||+|. +|.|.|||+.|....+++. |..+|++++|++||+.|++++.|..|.+||+..+....   .
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~---r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK---R  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee---E
Confidence            78999999999999985 6669999999988666665 88899999999999999999999999999999987532   2


Q ss_pred             ccccCcCeEEEeeCC----eEEEeEeec-----ccC----cccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288          337 GRRHRIPYSRLQRND----RVTNEQWFE-----LKA----NIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD  403 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~----~~~s~~w~~-----~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd  403 (513)
                       .....+|+...|+|    ..++.-.+.     .-+    ...+...-...+...+...|.+.|+++++|...|.+.++|
T Consensus       103 -irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  103 -IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             -EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence             23467888888888    223222111     001    1111000000111122235888999999999999999999


Q ss_pred             cCCCCccceEEecCCC-CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eEE--EEecC--CCCCeEEEEE
Q 037288          404 HRLTTRGAVQSYEGHV-NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-------ELV--FEDKF--SNSVPSAVCW  471 (513)
Q Consensus       404 ~~~~~~~~~~~~~~h~-~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-------~~~--~~~~~--~~~~v~~v~~  471 (513)
                      ..  ...++..++--. ..+..  +.|+..|++|+.-+.|..|+.|+++.-       ++-  +.+..  ....=.+++|
T Consensus       182 a~--t~e~vas~rits~~~IK~--I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf  257 (405)
T KOG1273|consen  182 AE--TLECVASFRITSVQAIKQ--IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF  257 (405)
T ss_pred             cc--hheeeeeeeechheeeeE--EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence            97  455777776444 44544  777888999999999999999998621       111  11111  1223457889


Q ss_pred             cCCCceEEeeCCCee
Q 037288          472 RTQRSMGPQIEGKIH  486 (513)
Q Consensus       472 ~p~~~~~~t~~~~~~  486 (513)
                      +.++.++..+....|
T Consensus       258 s~dgeYv~a~s~~aH  272 (405)
T KOG1273|consen  258 SGDGEYVCAGSARAH  272 (405)
T ss_pred             cCCccEEEeccccce
Confidence            999777666666555

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2e-15  Score=135.37  Aligned_cols=230  Identities=12%  Similarity=0.092  Sum_probs=165.5

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc----EEEEee-eCCCeEEEEEec--CCcEEEEEeCCCeEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM----ASWVCR-SKSDILAQQVIH--SGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~----~~~~~~-~~~~V~~l~~~~--~~~~l~sg~~dg~i~iw  323 (513)
                      ..+|.+-|.++.|.+.|+.+|+|+ |.+|+|||.....    +....+ |.+.|..+.|.+  -|+++|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            357889999999999999999885 5669999976544    222223 888899999986  47999999999999999


Q ss_pred             ECCCC-------ccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccC------------cccceeEee
Q 037288          324 DVRKR-------QRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKA------------NIWPSHTTF  372 (513)
Q Consensus       324 d~~~~-------~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~------------~~~~~~~~~  372 (513)
                      .=...       +... ..++...+..|+.|.|.|     .+++++       |+....            +........
T Consensus        89 EE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            64211       1222 456778899999999999     455554       333221            101111111


Q ss_pred             cCCCceEEEEEcC---CCCEEEEEecC-----CeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCC-C---CEEEE
Q 037288          373 MPSSISCLQSLQL---YDQYFLASSMD-----GTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQS-E---RFVMS  438 (513)
Q Consensus       373 ~~~~v~~~~~~~~---~~~~l~s~s~d-----g~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~-g---~~l~s  438 (513)
                      ......|+ .+++   ...+||+|+.+     +.++||......++  .+.++.+|..+|+.  ++|.|+ |   ..|++
T Consensus       168 ~~~~~~Cv-sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d--i~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  168 NKQPCFCV-SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD--ISWAPNIGRSYHLLAV  244 (361)
T ss_pred             ccCcceEE-eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee--eeeccccCCceeeEEE
Confidence            22333444 4443   35688888866     57899977532222  56778899999988  888886 2   46899


Q ss_pred             EeCCCcEEEEeCCCC--------------------eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          439 GGEDCKLRIWSIRSG--------------------ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       439 g~~Dg~v~vwd~~~~--------------------~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ++.|| |+||.+...                    +.+..+..|.+.|..++|+-.+.++++++.|-.
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~  311 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC  311 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence            99999 999998731                    245557889999999999999999999999977

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.1e-15  Score=135.42  Aligned_cols=221  Identities=10%  Similarity=0.037  Sum_probs=163.5

Q ss_pred             cCcEEEEEEcCCCC-EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          256 KCTVWTADFCTNPS-QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       256 ~~~V~~~~~s~~g~-~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      .+.|..+.|+|.+. +|+++-|+.+++||+........+.|..++++++|.+ ...+++|+.||.|+.+|+.++..    
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~----   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE----   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----
Confidence            46899999998665 5556679999999999988888889999999999985 56789999999999999998863    


Q ss_pred             ccccccCcCeEEEeeCC---eEEEeEeecccCccc-----ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          335 RAGRRHRIPYSRLQRND---RVTNEQWFELKANIW-----PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~---~~~s~~w~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ..+-.|..+|.+|.+.+   .+++|+||..-.-..     ....+.....|.+   .+-.++.|++|+.|..|.+||+|.
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~---~~v~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYC---MDVSGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEE---EeccCCEEEEeecCceEEEEEccc
Confidence            36778999999999997   899999664322111     1122222334444   455789999999999999999994


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecCC---------CCCeEEEEEcC
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG----ELVFEDKFS---------NSVPSAVCWRT  473 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~----~~~~~~~~~---------~~~v~~v~~~p  473 (513)
                      ... +.+..+ ..-.+...++++-|++.=.++++-||.|.+=.+...    +.-..++.|         -.||++++|+|
T Consensus       165 ~~~-~~q~re-S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  165 LDE-PFQRRE-SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccc-hhhhcc-ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            321 222111 221222344677787777888999999988766655    333445555         24799999999


Q ss_pred             CCceEEeeCCCee
Q 037288          474 QRSMGPQIEGKIH  486 (513)
Q Consensus       474 ~~~~~~t~~~~~~  486 (513)
                      -...|||.+.|-.
T Consensus       243 ~~~tfaTgGsDG~  255 (323)
T KOG1036|consen  243 IHGTFATGGSDGI  255 (323)
T ss_pred             ccceEEecCCCce
Confidence            9999999998866

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.3e-15  Score=134.23  Aligned_cols=233  Identities=12%  Similarity=0.109  Sum_probs=157.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      +.+|..+|.+++||++|+.|++++. ..|.+||+..|.++..+...++|+.+.|+|.. +..++.-.+..-.+.++..+.
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~  140 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK  140 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence            6788899999999999999998864 56999999999999999999999999999955 555555555556666666543


Q ss_pred             cccccccc-cccCcC-eEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          330 RGCSSRAG-RRHRIP-YSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       330 ~~~~~~~~-~~h~~~-v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      ... +..- .+.... -.+..|.+   .+++|.       ++..+-++.....+.....|..+ .++..|..|+.-+.|.
T Consensus       141 h~~-Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I-~~s~~g~~liiNtsDR  218 (405)
T KOG1273|consen  141 HSV-LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI-IVSRKGRFLIINTSDR  218 (405)
T ss_pred             eee-ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE-EEeccCcEEEEecCCc
Confidence            211 1110 111111 11223444   667765       33333333322222222344443 6788999999999999


Q ss_pred             eEEEEecCCCCc----c---ceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecCCC-CCeEE
Q 037288          398 TVKLYDHRLTTR----G---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSIRSGELVFEDKFSN-SVPSA  468 (513)
Q Consensus       398 ~i~lwd~~~~~~----~---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~~~~~~~~~~~~~-~~v~~  468 (513)
                      .|+.|+++....    +   +.+.++.-.+...--+++|+.+|.|+++|+. -..++||.-..|.+++.+.+.. .....
T Consensus       219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~D  298 (405)
T KOG1273|consen  219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLD  298 (405)
T ss_pred             eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheee
Confidence            999999862111    1   2233332223222234789999999988775 4569999999999999997765 55788


Q ss_pred             EEEcCCCceEEeeCCCee
Q 037288          469 VCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       469 v~~~p~~~~~~t~~~~~~  486 (513)
                      +.|+|-..++++...+.-
T Consensus       299 V~whp~rp~i~si~sg~v  316 (405)
T KOG1273|consen  299 VNWHPVRPIIASIASGVV  316 (405)
T ss_pred             cccccceeeeeeccCCce
Confidence            999999888888766644

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.69  E-value=4.4e-14  Score=136.50  Aligned_cols=237  Identities=9%  Similarity=0.039  Sum_probs=155.7

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEE-EEEe-CCeEEEEECCCCcEEEEeeeCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQA-VIGT-NLGAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l-~s~s-~~~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      .+|.+.+|++.+..            .+..+..+ ..+.+++|+|++..+ +++. ++.|++||+.+++....+.....+
T Consensus         9 ~d~~v~~~d~~t~~------------~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~   75 (300)
T TIGR03866         9 KDNTISVIDTATLE------------VTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP   75 (300)
T ss_pred             CCCEEEEEECCCCc------------eEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence            46677777765432            12334444 346789999999876 4543 566999999998877666544556


Q ss_pred             EEEEEecCCcEEEEE-eCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccc
Q 037288          300 LAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWP  367 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~  367 (513)
                      ..++|+|+++.++++ ..|+.|++||+++.+..   ..+.. ...+.++.|+|   .++++.        |+...+... 
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~---~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~-  150 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVL---AEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV-  150 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE---eEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE-
Confidence            788999999876554 56899999999876542   23332 23457788888   344333        344333221 


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEE-ecCCeEEEEecCCCCccceEEecCC-----CCceeEEEEEEcCCCCEEEE-Ee
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLAS-SMDGTVKLYDHRLTTRGAVQSYEGH-----VNSHTRIQLGVDQSERFVMS-GG  440 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~lwd~~~~~~~~~~~~~~h-----~~~v~~~~~~~s~~g~~l~s-g~  440 (513)
                       ..........+ ..+++++++|+++ ..++.|++||+.  ....+..+..+     ........++|+|++++++. .+
T Consensus       151 -~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       151 -DNVLVDQRPRF-AEFTADGKELWVSSEIGGTVSVIDVA--TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             -EEEEcCCCccE-EEECCCCCEEEEEcCCCCEEEEEEcC--cceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence             12222333334 4788999988655 469999999997  33344444322     12222334789999998654 45


Q ss_pred             CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      .++.|.+||+.+++.+..+.. ...+.+++|+|++..+++.
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEE
Confidence            577899999999988776543 4568999999997665544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.68  E-value=6.6e-15  Score=138.56  Aligned_cols=275  Identities=13%  Similarity=0.103  Sum_probs=193.6

Q ss_pred             EecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCC--CEE
Q 037288          194 KLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNP--SQA  271 (513)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g--~~l  271 (513)
                      ++......++.+||....-+   +..++..|.+.+|++.....        ....+..+..|..+|.++.|+|..  +.+
T Consensus       183 kv~~~Rit~l~fHPt~~~~l---va~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKL---VAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             EecccceEEEEecccCcceE---EEEccCCCcEEEEecCCCCC--------ccCceEEeccCCccccceEecCCChhhee
Confidence            33444444445555533222   23467889999999862211        122466788999999999999943  466


Q ss_pred             EEEeCCeEEEEECCCCcEEEEeee---CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288          272 VIGTNLGAAMVDMETGMASWVCRS---KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ  348 (513)
Q Consensus       272 ~s~s~~~i~vwd~~~~~~~~~~~~---~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  348 (513)
                      +++.||+|++-|++++....++..   ...+.+++|+.+...++.|..=|...+||+|.+...  +..+.-|...|.+++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~--~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE--YENLRLHKKKITSVA  329 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc--chhhhhhhcccceee
Confidence            677899999999998753333332   233688889888777777777779999999988752  457788989999999


Q ss_pred             eCC----eEEEeE-------eecccCcccce---eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC--Cccce
Q 037288          349 RND----RVTNEQ-------WFELKANIWPS---HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT--TRGAV  412 (513)
Q Consensus       349 ~~~----~~~s~~-------w~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~--~~~~~  412 (513)
                      ++|    .+++++       ||.+.-..+..   .+..|...|.+ +.|+|.+-.|++.+.|..|+|||....  ...+.
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~s-AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~  408 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNS-AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL  408 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeee-eEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence            999    667776       99987766653   34445555555 589999888999999999999997311  11244


Q ss_pred             EEec---CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC-Ce-EEEEEcCCCc-eEEeeC
Q 037288          413 QSYE---GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS-VP-SAVCWRTQRS-MGPQIE  482 (513)
Q Consensus       413 ~~~~---~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~-~v-~~v~~~p~~~-~~~t~~  482 (513)
                      .++.   .+....+.+...|+|+..++++|-.-..|-|+|-..++.+..+..... .| .-..|+|-+. +++.++
T Consensus       409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~  484 (498)
T KOG4328|consen  409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN  484 (498)
T ss_pred             ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence            4443   122344556789999999999999999999999999998888644332 33 4468999966 444333

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.68  E-value=4e-15  Score=145.28  Aligned_cols=257  Identities=16%  Similarity=0.151  Sum_probs=158.3

Q ss_pred             CCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEEC
Q 037288          206 GGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDM  284 (513)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~  284 (513)
                      +|...|++..    +..+|.+.+++......     .+..+ .+.....|.+.|.++.|-|-...|+++ +|.++++||+
T Consensus        60 ~~n~eHiLav----adE~G~i~l~dt~~~~f-----r~ee~-~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   60 APNKEHILAV----ADEDGGIILFDTKSIVF-----RLEER-QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             CCCccceEEE----ecCCCceeeecchhhhc-----chhhh-hhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence            4454555433    34788888877653221     11111 234467899999999999955566666 5667999999


Q ss_pred             CCCcEEEE---eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccc----ccccccccCcCeEEEeeCCeEEEe
Q 037288          285 ETGMASWV---CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGC----SSRAGRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       285 ~~~~~~~~---~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~s~  356 (513)
                      .++++...   ++|...|.+++|.|.. .+|++|++||.|.|||++......    .......|...-.-  -.|  +..
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp--skp--~~k  205 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP--SKP--LKK  205 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC--Cch--hhc
Confidence            99886543   5699999999999966 799999999999999998765211    00111223221000  000  000


Q ss_pred             E---eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCcc----ce--EEecCC-CCceeEE
Q 037288          357 Q---WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRG----AV--QSYEGH-VNSHTRI  425 (513)
Q Consensus       357 ~---w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~----~~--~~~~~h-~~~v~~~  425 (513)
                      .   |..        ......+.|+. +.| .|...||+++. |+.|++||+|.....    +.  ..+..| ...+-..
T Consensus       206 r~~k~kA--------~s~ti~ssvTv-v~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~  275 (720)
T KOG0321|consen  206 RIRKWKA--------ASNTIFSSVTV-VLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV  275 (720)
T ss_pred             ccccccc--------ccCceeeeeEE-EEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence            0   000        00001112332 333 48889999888 999999999954321    22  222223 1133334


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecCCC--CCeEEEEEcCCCceEEeeCCCee
Q 037288          426 QLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFEDKFSN--SVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~--~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .+..+..|.+|++.+.|+.|++||+.+-.  ++..+.++.  .--..-..+|++..+++...+-+
T Consensus       276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~  340 (720)
T KOG0321|consen  276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ  340 (720)
T ss_pred             EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence            57778889999999999999999998643  333443332  11223456788888888877765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=1.9e-14  Score=128.09  Aligned_cols=194  Identities=15%  Similarity=0.239  Sum_probs=140.4

Q ss_pred             cccCcEEEEEEcC-CCCEEEEEeCC-eEEEEECCCCc----EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECC
Q 037288          254 SFKCTVWTADFCT-NPSQAVIGTNL-GAAMVDMETGM----ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       254 ~h~~~V~~~~~s~-~g~~l~s~s~~-~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~  326 (513)
                      .|..++++.+|+. +.+++.+++=+ +..|||++++.    ...++.|..+|..++|...+ +++++.+.||.|++||+|
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            4567999999997 67788777644 58999999973    34567799999999999876 799999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-CeEEEEecC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-GTVKLYDHR  405 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~lwd~~  405 (513)
                      .......+-.-.....+.                                 ..+.+...+.+++|+-.+| ..|.|.|+|
T Consensus       228 ~leHSTIIYE~p~~~~pL---------------------------------lRLswnkqDpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPL---------------------------------LRLSWNKQDPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             ccccceEEecCCCCCCcc---------------------------------eeeccCcCCchHHhhhhcCCceEEEEEec
Confidence            876422000000111222                                 2223334567788876654 569999999


Q ss_pred             CCCccceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe------EEEEecCCCCCeEEEEEcCC-Cce
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGE------LVFEDKFSNSVPSAVCWRTQ-RSM  477 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~------~~~~~~~~~~~v~~v~~~p~-~~~  477 (513)
                      .+ ..++..+++|.+.|..  ++|.|. ..+|+++|.|..+.+||+.+.-      ++..+. .++.|+.+.|++. +..
T Consensus       275 ~P-~tpva~L~~H~a~VNg--IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dw  350 (364)
T KOG0290|consen  275 VP-CTPVARLRNHQASVNG--IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDW  350 (364)
T ss_pred             CC-CcceehhhcCcccccc--eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCE
Confidence            42 2388999999999988  888885 5789999999999999997532      333344 3667999999977 445


Q ss_pred             EEeeCCC
Q 037288          478 GPQIEGK  484 (513)
Q Consensus       478 ~~t~~~~  484 (513)
                      ++-+.++
T Consensus       351 iai~~~k  357 (364)
T KOG0290|consen  351 IAICFGK  357 (364)
T ss_pred             EEEEecC
Confidence            5544443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=6.1e-17  Score=159.84  Aligned_cols=194  Identities=19%  Similarity=0.276  Sum_probs=163.0

Q ss_pred             EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEE
Q 037288          279 AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTN  355 (513)
Q Consensus       279 i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s  355 (513)
                      +++||.+.     ...|...|.++..-..++.+++|+.|..+-+|.+.....   +..+.+|..+|.++.|+.   .+.+
T Consensus        16 Lr~~~~~~-----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~---i~S~~~hespIeSl~f~~~E~Llaa   87 (825)
T KOG0267|consen   16 LRVWDTRE-----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA---ITSLTGHESPIESLTFDTSERLLAA   87 (825)
T ss_pred             cccccchh-----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch---hheeeccCCcceeeecCcchhhhcc
Confidence            66777652     234677788888867789999999999999999977665   347999999999999998   3444


Q ss_pred             eE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEE
Q 037288          356 EQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG  428 (513)
Q Consensus       356 ~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~  428 (513)
                      |+       ||+..++..- ....|...+.++ .|+|.+.+++.|+.|+.+++||+|  ..+|.+.+.+|...+.+  +.
T Consensus        88 gsasgtiK~wDleeAk~vr-tLtgh~~~~~sv-~f~P~~~~~a~gStdtd~~iwD~R--k~Gc~~~~~s~~~vv~~--l~  161 (825)
T KOG0267|consen   88 GSASGTIKVWDLEEAKIVR-TLTGHLLNITSV-DFHPYGEFFASGSTDTDLKIWDIR--KKGCSHTYKSHTRVVDV--LR  161 (825)
T ss_pred             cccCCceeeeehhhhhhhh-hhhccccCccee-eeccceEEeccccccccceehhhh--ccCceeeecCCcceeEE--Ee
Confidence            43       9998776432 122344556665 599999999999999999999998  77899999999998877  88


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          429 VDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       429 ~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |+|+|+|+++|++|.+++|||+..|+.+.+|+.|...+..+.|+|...++++.+.|--
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t  219 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT  219 (825)
T ss_pred             ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence            9999999999999999999999999999999999999999999999999999888855

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=2.3e-15  Score=141.21  Aligned_cols=179  Identities=17%  Similarity=0.141  Sum_probs=135.6

Q ss_pred             CCCEEEEEeCC-eEEEEECCCCc---EEEEe-------------------eeCCCeEEEEEecCC-cEEEEEeCCCeEEE
Q 037288          267 NPSQAVIGTNL-GAAMVDMETGM---ASWVC-------------------RSKSDILAQQVIHSG-NVVLCGFRNGAIVT  322 (513)
Q Consensus       267 ~g~~l~s~s~~-~i~vwd~~~~~---~~~~~-------------------~~~~~V~~l~~~~~~-~~l~sg~~dg~i~i  322 (513)
                      -|+++|.|.-+ .|.|||+.-..   +..++                   .|...|.+++|+..- ++||+|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            36799999754 59999986321   11111                   266678899998754 89999999999999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY  402 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw  402 (513)
                      ||+.++++..   .+..|.+.|.++.|+|                                 ....+|++|+.|++|.+.
T Consensus       271 WD~~~g~p~~---s~~~~~k~Vq~l~wh~---------------------------------~~p~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  271 WDVDTGKPKS---SITHHGKKVQTLEWHP---------------------------------YEPSVLLSGSYDGTVALK  314 (463)
T ss_pred             EEcCCCCcce---ehhhcCCceeEEEecC---------------------------------CCceEEEeccccceEEee
Confidence            9999998744   6667778887776644                                 467899999999999999


Q ss_pred             ecCCCCcc-ceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCC-CceE
Q 037288          403 DHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQ-RSMG  478 (513)
Q Consensus       403 d~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~-~~~~  478 (513)
                      |+|..... ..-.+.   +.|..  +.|+|. ...++++..||+|+-+|++.. +++.+++.|+++|.++++++. ..++
T Consensus       315 D~R~~~~s~~~wk~~---g~VEk--v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  315 DCRDPSNSGKEWKFD---GEVEK--VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             eccCccccCceEEec---cceEE--EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence            99932111 222333   34555  778775 456778889999999999985 999999999999999999998 5667


Q ss_pred             EeeCCCee
Q 037288          479 PQIEGKIH  486 (513)
Q Consensus       479 ~t~~~~~~  486 (513)
                      +|.+.+--
T Consensus       390 ~t~s~d~~  397 (463)
T KOG0270|consen  390 STASTDKV  397 (463)
T ss_pred             eeccccce
Confidence            77665544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=2.5e-15  Score=145.59  Aligned_cols=230  Identities=9%  Similarity=0.052  Sum_probs=166.2

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCc--EEEEEeCCCeEEEEE
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGN--VVLCGFRNGAIVTVD  324 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~--~l~sg~~dg~i~iwd  324 (513)
                      +-..+.||++.|.++...|.|.+|++|++++ |+||.+.||++++.....+.|.||+|+|.+.  +||++-.+ .+.|-+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn  470 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN  470 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence            4567899999999999999999999998765 9999999999999999999999999999873  55555433 355555


Q ss_pred             CCCCcccc----------------------------------ccccccccCcCeEEEeeCC--eEEEeE-----------
Q 037288          325 VRKRQRGC----------------------------------SSRAGRRHRIPYSRLQRND--RVTNEQ-----------  357 (513)
Q Consensus       325 ~~~~~~~~----------------------------------~~~~~~~h~~~v~~v~~~~--~~~s~~-----------  357 (513)
                      ..-+....                                  .+.....|...|..+.|+.  .+++..           
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            43221000                                  0112234566777788877  222221           


Q ss_pred             eecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEE
Q 037288          358 WFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV  436 (513)
Q Consensus       358 w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l  436 (513)
                      .++....  ....+.. .+.+.+ +.|+|...+|++++.. .|++||+-  ....++.+......+..  ++++|.|..|
T Consensus       551 HQLSK~~--sQ~PF~kskG~vq~-v~FHPs~p~lfVaTq~-~vRiYdL~--kqelvKkL~tg~kwiS~--msihp~GDnl  622 (733)
T KOG0650|consen  551 HQLSKRK--SQSPFRKSKGLVQR-VKFHPSKPYLFVATQR-SVRIYDLS--KQELVKKLLTGSKWISS--MSIHPNGDNL  622 (733)
T ss_pred             Eeccccc--ccCchhhcCCceeE-EEecCCCceEEEEecc-ceEEEehh--HHHHHHHHhcCCeeeee--eeecCCCCeE
Confidence            1211111  1112222 233444 5889999999998864 89999995  43366666655555555  8889999999


Q ss_pred             EEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          437 MSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       437 ~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +.|+.|+.+..+|+.-. ++.+++..|...+++|+|++...+|+++..|-.
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            99999999999999754 677889999999999999999988888887544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.67  E-value=2.2e-15  Score=133.79  Aligned_cols=161  Identities=15%  Similarity=0.129  Sum_probs=130.6

Q ss_pred             cccCcEEEEEEcC--CCCEEEEEeCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCC
Q 037288          254 SFKCTVWTADFCT--NPSQAVIGTNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       254 ~h~~~V~~~~~s~--~g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +|+....+-+|+|  +|..+++.++.++..||+++..+...+.  |...|..++|+|+. .+|++|+.||.|++||.|..
T Consensus       168 e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             cccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            3667888899998  8999999999999999999988777665  66779999999987 68999999999999999987


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC-
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT-  407 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~-  407 (513)
                      +. + ++.+.+|...|.++.|+|                                 ...+++++|+.|..|.+|..... 
T Consensus       248 k~-p-v~el~~HsHWvW~VRfn~---------------------------------~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  248 KF-P-VQELPGHSHWVWAVRFNP---------------------------------EHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             Cc-c-ccccCCCceEEEEEEecC---------------------------------ccceEEEecCCCceeEEEeccccc
Confidence            64 3 789999999999998876                                 23567777777777777754321 


Q ss_pred             --------------------------CccceEEecCCCCceeEEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 037288          408 --------------------------TRGAVQSYEGHVNSHTRIQLGVDQSERFV-MSGGEDCKLRIWSIR  451 (513)
Q Consensus       408 --------------------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l-~sg~~Dg~v~vwd~~  451 (513)
                                                ..+.+.+|..|.+.|++  ++|+.-+.|+ ++-++||.+.|=++.
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~--~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA--LAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEE--EeeccCCCeeEEEeccCceEEeecCC
Confidence                                      22356789999999988  8898766664 677899999887664

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.67  E-value=1.6e-14  Score=142.31  Aligned_cols=231  Identities=10%  Similarity=0.094  Sum_probs=169.6

Q ss_pred             eccccCcEEEEEEcCCCC-EEEEEeCCeEEEEECCCCcEEEE----ee----eCCCeEEEEEecCCcEEEEEeCCCeEEE
Q 037288          252 VASFKCTVWTADFCTNPS-QAVIGTNLGAAMVDMETGMASWV----CR----SKSDILAQQVIHSGNVVLCGFRNGAIVT  322 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~-~l~s~s~~~i~vwd~~~~~~~~~----~~----~~~~V~~l~~~~~~~~l~sg~~dg~i~i  322 (513)
                      +.||++-|+++.|+|.+. +|.+.+|.++.+|...+..-++.    ++    .....+...|+|+++.+++-+..|-.++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            679999999999999995 55555788899997665532221    11    2334889999999999999999999999


Q ss_pred             EECCCCc-cccccccccccCcCeEEEeeCC---eEEEeEeecc------cCcccceeE----eecCCCceEEEEEcCCCC
Q 037288          323 VDVRKRQ-RGCSSRAGRRHRIPYSRLQRND---RVTNEQWFEL------KANIWPSHT----TFMPSSISCLQSLQLYDQ  388 (513)
Q Consensus       323 wd~~~~~-~~~~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~------~~~~~~~~~----~~~~~~v~~~~~~~~~~~  388 (513)
                      |...... ... .....||.+.|..++|+|   .+++.+-|..      -++...-+.    -.|....+|+.... ...
T Consensus       343 Wkt~d~~~w~~-~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~  420 (764)
T KOG1063|consen  343 WKTKDKTFWTQ-EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDL  420 (764)
T ss_pred             EeccCccceee-ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCc
Confidence            9833322 222 447789999999999999   5666652211      111111122    23445677775554 366


Q ss_pred             EEEEEecCCeEEEEecCCC-------------------------------------------------------------
Q 037288          389 YFLASSMDGTVKLYDHRLT-------------------------------------------------------------  407 (513)
Q Consensus       389 ~l~s~s~dg~i~lwd~~~~-------------------------------------------------------------  407 (513)
                      .|++|.....+++|+....                                                             
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence            7888888888999976421                                                             


Q ss_pred             -------------CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEecCCCCCeEEE
Q 037288          408 -------------TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGELVFEDKFSNSVPSAV  469 (513)
Q Consensus       408 -------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~~~~~~~~~~~v~~v  469 (513)
                                   ....++.+-||...|++  ++.+|+|+++++++..     ..|++|+..+...++.+..|.-.|+.+
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~--l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYA--LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEE--EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                         00012445688888877  8889999999999864     358999999999999999999999999


Q ss_pred             EEcCCCceEEeeCCCee
Q 037288          470 CWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       470 ~~~p~~~~~~t~~~~~~  486 (513)
                      +|+|++.++++.++|-.
T Consensus       579 ~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             EECCCCcEEEEeecCce
Confidence            99999999999998866

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.7e-15  Score=139.38  Aligned_cols=182  Identities=17%  Similarity=0.162  Sum_probs=145.7

Q ss_pred             CCCEEEEEeCC--eEEEEECCCCcEEE-EeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC
Q 037288          267 NPSQAVIGTNL--GAAMVDMETGMASW-VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP  343 (513)
Q Consensus       267 ~g~~l~s~s~~--~i~vwd~~~~~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  343 (513)
                      ++.+++++.-.  .+.+|.+....... ...-++.|.|++-+|+|.+|+.|+..|.+++|.+.++..   +..+.+|..+
T Consensus        49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---L~v~~aHYQ~  125 (476)
T KOG0646|consen   49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---LNVLSAHYQS  125 (476)
T ss_pred             chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH---HHHHHhhccc
Confidence            34677777543  38999987654333 333678899999999999999999999999999999987   4578899998


Q ss_pred             eEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC-------CCccceEEec
Q 037288          344 YSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL-------TTRGAVQSYE  416 (513)
Q Consensus       344 v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~-------~~~~~~~~~~  416 (513)
                      |+++.                                  |+.||.+|++|+.||.|.+|++-.       ....++..|.
T Consensus       126 ITcL~----------------------------------fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~  171 (476)
T KOG0646|consen  126 ITCLK----------------------------------FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS  171 (476)
T ss_pred             eeEEE----------------------------------EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence            88854                                  456999999999999999997631       1233888999


Q ss_pred             CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEE-eeCCCee
Q 037288          417 GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGP-QIEGKIH  486 (513)
Q Consensus       417 ~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~-t~~~~~~  486 (513)
                      .|.-+|+.+.+.+.+....|+++|.|.++++||+..|.++.++.. ..++.+++..|. ..+++ +.++.+.
T Consensus       172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~  242 (476)
T KOG0646|consen  172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIF  242 (476)
T ss_pred             cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEE
Confidence            999999997777776667899999999999999999999998776 567999999998 34444 4444444

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.3e-14  Score=145.61  Aligned_cols=191  Identities=17%  Similarity=0.183  Sum_probs=153.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          255 FKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      +...|.+++..  +.+|++|++ ++|.+|.+..++.-.+ .+..-++.+++|+.+|++++.|+.|-.|++-++...... 
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-  131 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-  131 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-
Confidence            77788888874  447777755 5699999998876533 346778999999999999999999999999999887764 


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~  412 (513)
                        ..+.+|..+|.++.                                  ++|++++||+.+-||.|++||+.  +....
T Consensus       132 --~~lrgh~apVl~l~----------------------------------~~p~~~fLAvss~dG~v~iw~~~--~~~~~  173 (933)
T KOG1274|consen  132 --KVLRGHDAPVLQLS----------------------------------YDPKGNFLAVSSCDGKVQIWDLQ--DGILS  173 (933)
T ss_pred             --eeecccCCceeeee----------------------------------EcCCCCEEEEEecCceEEEEEcc--cchhh
Confidence              48899999999855                                  45699999999999999999996  33344


Q ss_pred             EEecCC------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--CCCCCeEEEEEcCCCceEEeeCCC
Q 037288          413 QSYEGH------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK--FSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       413 ~~~~~h------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +++.+-      ...-.+..++|+|+|..++..+.|+.|++|+..+++....+.  .+.+.++.++|+|++.++|++..+
T Consensus       174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~  253 (933)
T KOG1274|consen  174 KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD  253 (933)
T ss_pred             hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC
Confidence            444321      111224558999998889999999999999999999988874  345559999999999999999887


Q ss_pred             ee
Q 037288          485 IH  486 (513)
Q Consensus       485 ~~  486 (513)
                      -.
T Consensus       254 g~  255 (933)
T KOG1274|consen  254 GQ  255 (933)
T ss_pred             Cc
Confidence            65

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.66  E-value=7.1e-15  Score=143.95  Aligned_cols=211  Identities=13%  Similarity=0.140  Sum_probs=150.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  336 (513)
                      .|+.++|-|||..|+.++++.+.+||...|.....++ |+..|.|++|+.||..+++|+.|..|.+|...-...     -
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-----L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-----L   88 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-----e
Confidence            8999999999999999999999999999998877776 888899999999999999999999999998654432     2


Q ss_pred             ccccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          337 GRRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      -..|.+.|.|+.|+|   .+++++      |........   ..+....+.+ .+|..||++|+.|-.||+|.+-+-.-.
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~---K~kss~R~~~-CsWtnDGqylalG~~nGTIsiRNk~gE  164 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS---KHKSSSRIIC-CSWTNDGQYLALGMFNGTISIRNKNGE  164 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH---hhhhheeEEE-eeecCCCcEEEEeccCceEEeecCCCC
Confidence            257999999999999   666766      665443321   1122334444 478889999999999999988753210


Q ss_pred             CccceEEecCCCCceeE--------------------------------------------EEEEEcCCCCEEEEEeCCC
Q 037288          408 TRGAVQSYEGHVNSHTR--------------------------------------------IQLGVDQSERFVMSGGEDC  443 (513)
Q Consensus       408 ~~~~~~~~~~h~~~v~~--------------------------------------------~~~~~s~~g~~l~sg~~Dg  443 (513)
                      ....+..--|...+|..                                            .++.+-++|.+++.||.|+
T Consensus       165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence            00011111111111111                                            1233445677788888888


Q ss_pred             cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288          444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      .+.+|- +.|-.+.++...+..|+.|+..|++..+
T Consensus       245 ~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v  278 (1081)
T KOG1538|consen  245 QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYV  278 (1081)
T ss_pred             ceEEEe-ecCeEEeeccccceeEEEEEEccCCceE
Confidence            887775 5677777776677788888888885433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.7e-14  Score=129.38  Aligned_cols=270  Identities=9%  Similarity=0.070  Sum_probs=169.8

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      +.-++|++.|+.++||+...+...    ..++        .+-+.+.+.+-.+.|-+.                      
T Consensus        25 GRRmAtCSsDq~vkI~d~~~~s~~----W~~T--------s~Wrah~~Si~rV~WAhP----------------------   70 (361)
T KOG2445|consen   25 GRRMATCSSDQTVKIWDSTSDSGT----WSCT--------SSWRAHDGSIWRVVWAHP----------------------   70 (361)
T ss_pred             CceeeeccCCCcEEEEeccCCCCc----eEEe--------eeEEecCCcEEEEEecCc----------------------
Confidence            356899999999999997444322    2222        123333444555566221                      


Q ss_pred             ccCCCccc-ceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC--CCCEEEEE-eCCe
Q 037288          203 ATDGGSVR-HALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT--NPSQAVIG-TNLG  278 (513)
Q Consensus       203 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~g~~l~s~-s~~~  278 (513)
                           .-. .+..|.     .++.+.+|.-........-..|.   ...++......|+++.|.|  -|-.+|++ +|+.
T Consensus        71 -----EfGqvvA~cS-----~Drtv~iWEE~~~~~~~~~~~Wv---~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~  137 (361)
T KOG2445|consen   71 -----EFGQVVATCS-----YDRTVSIWEEQEKSEEAHGRRWV---RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI  137 (361)
T ss_pred             -----cccceEEEEe-----cCCceeeeeecccccccccceeE---EEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence                 112 222222     25566665542111111111122   2344666778999999999  46677766 5666


Q ss_pred             EEEEECCCCc------EEEEee--------eCCCeEEEEEecCC---cEEEEEeCC-----CeEEEEECCCCc-cccccc
Q 037288          279 AAMVDMETGM------ASWVCR--------SKSDILAQQVIHSG---NVVLCGFRN-----GAIVTVDVRKRQ-RGCSSR  335 (513)
Q Consensus       279 i~vwd~~~~~------~~~~~~--------~~~~V~~l~~~~~~---~~l~sg~~d-----g~i~iwd~~~~~-~~~~~~  335 (513)
                      ++||+.-..-      ....++        +.....|+.|+|..   .+|+.|+.+     +.++||...... .-..+.
T Consensus       138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva  217 (361)
T KOG2445|consen  138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA  217 (361)
T ss_pred             EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence            9999764331      111111        55668999999853   688888766     588999876554 222266


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC--------
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT--------  407 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~--------  407 (513)
                      .+.+|.++|++|+|.|                              ..-..-++||+++.|| |+||.+...        
T Consensus       218 ~L~d~~dpI~di~wAP------------------------------n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee  266 (361)
T KOG2445|consen  218 ELPDHTDPIRDISWAP------------------------------NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE  266 (361)
T ss_pred             hcCCCCCcceeeeecc------------------------------ccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence            8899999999999977                              1112346899999999 999998621        


Q ss_pred             --C--------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEEEecCCCCCeEEEEEcC
Q 037288          408 --T--------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR---SGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       408 --~--------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~---~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                        .        -..+..+.+|.+.|..  +.|+-.|..|++.|.||+|++|...   ..++...++... .+....|.+
T Consensus       267 ~~~~~~~~~l~v~~vs~~~~H~~~VWr--v~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~-~~~~~~~~~  342 (361)
T KOG2445|consen  267 VLAPDLMTDLPVEKVSELDDHNGEVWR--VRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEG-SVTKPDFSQ  342 (361)
T ss_pred             ccCCCCccccceEEeeeccCCCCceEE--EEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccC-CCCCccccc
Confidence              0        0134567789988866  8888899999999999999999653   345666665533 244444443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.65  E-value=7.1e-15  Score=135.88  Aligned_cols=194  Identities=13%  Similarity=0.090  Sum_probs=144.9

Q ss_pred             EeccccCcEEEEEEcC-CCCEEEEEeCCe-EEEEECCCCc--------EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCe
Q 037288          251 LVASFKCTVWTADFCT-NPSQAVIGTNLG-AAMVDMETGM--------ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGA  319 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i~vwd~~~~~--------~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~  319 (513)
                      ...||+.+|..++|+| +...||+|++++ |.||++-.+-        ...+..|...|--++|+|.. ++|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3789999999999999 566888999876 9999986542        34445588889999999976 89999999999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      |.+||+.+++...   ++. |.+.|.++                                  .|+.+|.+|++.+.|..|
T Consensus       156 v~iWnv~tgeali---~l~-hpd~i~S~----------------------------------sfn~dGs~l~TtckDKkv  197 (472)
T KOG0303|consen  156 VSIWNVGTGEALI---TLD-HPDMVYSM----------------------------------SFNRDGSLLCTTCKDKKV  197 (472)
T ss_pred             EEEEeccCCceee---ecC-CCCeEEEE----------------------------------EeccCCceeeeeccccee
Confidence            9999999987533   344 66666664                                  556699999999999999


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCe---EEEEecCCCCCeEEEEEcC
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIRSGE---LVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~~~~---~~~~~~~~~~~v~~v~~~p  473 (513)
                      +|||.|  ....+..-.+|.+.- ..++.|-.+|.++.+|-   .+..+-+||..+-+   .+.++.. .+.|.---|.|
T Consensus       198 Rv~dpr--~~~~v~e~~~heG~k-~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~  273 (472)
T KOG0303|consen  198 RVIDPR--RGTVVSEGVAHEGAK-PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDP  273 (472)
T ss_pred             EEEcCC--CCcEeeecccccCCC-cceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecC
Confidence            999998  555777667787653 33466778888554443   37789999876533   3334444 34466667788


Q ss_pred             C-CceEEeeCCCee
Q 037288          474 Q-RSMGPQIEGKIH  486 (513)
Q Consensus       474 ~-~~~~~t~~~~~~  486 (513)
                      + ..+++.+-+|-.
T Consensus       274 dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  274 DTSIVYLCGKGDSS  287 (472)
T ss_pred             CCCEEEEEecCCcc
Confidence            8 666666666654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.2e-14  Score=131.27  Aligned_cols=234  Identities=14%  Similarity=0.112  Sum_probs=163.8

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCC------CcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMET------GMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAI  320 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~------~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i  320 (513)
                      ..+.+|.+.|+++.|+.++++|++|+|+. +++|+++.      .+++.+..  |.+.|+|++|+.....|++|+.+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            34789999999999999999999998876 99998753      34555555  55789999999888999999999999


Q ss_pred             EEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccc--ceeEeecCCCceEEEEEcCCCC
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIW--PSHTTFMPSSISCLQSLQLYDQ  388 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~  388 (513)
                      ...|+.+.+.+. +..-....+.|..++.+|   .+++.+       |+.+.....  +......+....++.+.+....
T Consensus       130 I~HDiEt~qsi~-V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIY-VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             Eeeecccceeee-eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence            999999887654 334444567999999999   333333       998876522  2222222444445433334466


Q ss_pred             EEEEEecCCeEEEEecCCCCcc------------------------------------------------ceEEecCCC-
Q 037288          389 YFLASSMDGTVKLYDHRLTTRG------------------------------------------------AVQSYEGHV-  419 (513)
Q Consensus       389 ~l~s~s~dg~i~lwd~~~~~~~------------------------------------------------~~~~~~~h~-  419 (513)
                      +|++++..+-+-+||.|+....                                                ++..+. |. 
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~  287 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNP  287 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCC
Confidence            7888888999999999863110                                                011111 11 


Q ss_pred             ----CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----C------------------eEEEEecCCCCCeEEEEEc
Q 037288          420 ----NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-----G------------------ELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       420 ----~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-----~------------------~~~~~~~~~~~~v~~v~~~  472 (513)
                          +..+..+++|- +..-+++|+.+-.|++|.+..     |                  +.+..+++|.+.++.|.|+
T Consensus       288 ~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~  366 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS  366 (609)
T ss_pred             Ccceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence                11111223443 234489999999999998742     1                  1344578999999999999


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      |...++++++-...
T Consensus       367 ~H~~~l~SSGVE~~  380 (609)
T KOG4227|consen  367 QHNNLLVSSGVENS  380 (609)
T ss_pred             CCcceEeccchhhh
Confidence            99999988876543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=2.9e-15  Score=155.60  Aligned_cols=194  Identities=13%  Similarity=0.129  Sum_probs=144.7

Q ss_pred             CcEEEEEEcCCCCE----EEEEeC-CeEEEEECCC---CcE---EE-EeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEE
Q 037288          257 CTVWTADFCTNPSQ----AVIGTN-LGAAMVDMET---GMA---SW-VCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTV  323 (513)
Q Consensus       257 ~~V~~~~~s~~g~~----l~s~s~-~~i~vwd~~~---~~~---~~-~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iw  323 (513)
                      ..-+.++|.+.|..    ||.|.+ |+|.+||...   +..   +. .-.|++.|..++|++.. ++||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            57789999987765    776655 4599999765   221   22 22389999999999965 699999999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD  403 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd  403 (513)
                      |+...+.-.   .+.                               .....+.|.++.|.....+.|++++.+|.+.|||
T Consensus       145 Dlnn~~tP~---~~~-------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  145 DLNKPETPF---TPG-------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             ccCCcCCCC---CCC-------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence            999865422   110                               0112233444444445577899999999999999


Q ss_pred             cCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCC---cEEEEeCCCC-eEEEEecCCCCCeEEEEEcCC-Cce
Q 037288          404 HRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDC---KLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQ-RSM  477 (513)
Q Consensus       404 ~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg---~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~-~~~  477 (513)
                      +|  ..+++..+..|.+...+-.+.|+|+. ..|++++.|.   .|.+||++.. .+++++.+|...|.++.|++. ..+
T Consensus       191 lr--~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~l  268 (1049)
T KOG0307|consen  191 LR--KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRL  268 (1049)
T ss_pred             cc--CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchh
Confidence            99  66677778777775555569999986 3455555543   6999999874 577888899999999999998 599


Q ss_pred             EEeeCCCee
Q 037288          478 GPQIEGKIH  486 (513)
Q Consensus       478 ~~t~~~~~~  486 (513)
                      ++|++.|..
T Consensus       269 llSsgkD~~  277 (1049)
T KOG0307|consen  269 LLSSGKDNR  277 (1049)
T ss_pred             hhcccCCCC
Confidence            999999977

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=3.2e-14  Score=146.12  Aligned_cols=189  Identities=20%  Similarity=0.216  Sum_probs=130.9

Q ss_pred             EEEEEcCC-CCEEEEEeCCeEEEEECCCCcEEEEee--eCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          260 WTADFCTN-PSQAVIGTNLGAAMVDMETGMASWVCR--SKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       260 ~~~~~s~~-g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      .-++|... |.++++|.-..|+|||.+......-+.  ....|+++.-+. .|++|++|..||.|++||.|.......+.
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            34566664 445555544559999999887666554  344477776553 46999999999999999999876543244


Q ss_pred             cccccCcC--eEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecCCeEEEEecCCCCccce
Q 037288          336 AGRRHRIP--YSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       336 ~~~~h~~~--v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~~~~~  412 (513)
                      ....|...  |..+                                  .+.++|- .|++|+.||.|++||+|+......
T Consensus      1249 ~~R~h~~~~~Iv~~----------------------------------slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHL----------------------------------SLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred             eecccCCcccceeE----------------------------------EeecCCCcceeeeccCCeEEEEecccCccccc
Confidence            55566554  4443                                  3344443 499999999999999996433333


Q ss_pred             EEecCCC--C-ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-------CCCCeEEEEEcCCCceEEeeC
Q 037288          413 QSYEGHV--N-SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-------SNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       413 ~~~~~h~--~-~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      .++..|-  + ..++  +.++++...+|+|+. +.|+||++.. +++..++.       ..+.+.+++|||...++|.+.
T Consensus      1295 ~~iv~~~~yGs~lTa--l~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTA--LTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             ceeeeccccCcccee--eeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence            3344443  3 2555  888999999999998 9999999754 44444332       245689999999988888776


Q ss_pred             CCee
Q 037288          483 GKIH  486 (513)
Q Consensus       483 ~~~~  486 (513)
                      .|..
T Consensus      1371 ~Ds~ 1374 (1387)
T KOG1517|consen 1371 ADST 1374 (1387)
T ss_pred             CCce
Confidence            6643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.61  E-value=3.6e-13  Score=132.96  Aligned_cols=218  Identities=10%  Similarity=0.076  Sum_probs=152.6

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEE-EEe----eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMAS-WVC----RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~-~~~----~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      +.||.+.|.+++|+|.|.+|.+.+ |.+-|++---..+.. ..+    -|.-+++|++|-+....+++|.....+++|+.
T Consensus       357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a  436 (764)
T KOG1063|consen  357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA  436 (764)
T ss_pred             cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence            789999999999999999888665 556888755422211 111    16778999999876667888888888888875


Q ss_pred             C-------------------------------------------CCcc------------------------------cc
Q 037288          326 R-------------------------------------------KRQR------------------------------GC  332 (513)
Q Consensus       326 ~-------------------------------------------~~~~------------------------------~~  332 (513)
                      .                                           ++..                              -+
T Consensus       437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP  516 (764)
T KOG1063|consen  437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP  516 (764)
T ss_pred             cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence            2                                           0000                              00


Q ss_pred             ccccccccCcCeEEEeeCC--eEEEeE-------------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecC
Q 037288          333 SSRAGRRHRIPYSRLQRND--RVTNEQ-------------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~--~~~s~~-------------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      .+..+.||...|.+++.+|  .+++.+             |....  ......+. |.=.|+. ..|+|+|++|++.+.|
T Consensus       517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~HsLTVT~-l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGHSLTVTR-LAFSPDGRYLLSVSRD  593 (764)
T ss_pred             hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hhhhheecccceEEEE-EEECCCCcEEEEeecC
Confidence            2456788999999999998  444433             33222  22222233 3334455 5899999999999999


Q ss_pred             CeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEE--ecCCCCCeEEEE
Q 037288          397 GTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG--ELVFE--DKFSNSVPSAVC  470 (513)
Q Consensus       397 g~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~--~~~~~--~~~~~~~v~~v~  470 (513)
                      .++.+|........  .....+.|..-|.  +++|+|++.+++++|.|.+|+||.....  +.+..  ...++.+|++++
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIW--dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~  671 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIW--DCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA  671 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEE--EcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence            99999987421111  2334677887664  4999999999999999999999999887  44433  234577899999


Q ss_pred             EcCC
Q 037288          471 WRTQ  474 (513)
Q Consensus       471 ~~p~  474 (513)
                      |.|-
T Consensus       672 ~~~~  675 (764)
T KOG1063|consen  672 YLPV  675 (764)
T ss_pred             eecc
Confidence            9886

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.61  E-value=4.3e-14  Score=125.84  Aligned_cols=199  Identities=12%  Similarity=0.076  Sum_probs=146.4

Q ss_pred             ccccCcEEEEEEcCCCC----EEEEEeCCeEEEEECCCC--cE--EEE------eeeCCCeEEEEEec-CCcEEEEEeCC
Q 037288          253 ASFKCTVWTADFCTNPS----QAVIGTNLGAAMVDMETG--MA--SWV------CRSKSDILAQQVIH-SGNVVLCGFRN  317 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~----~l~s~s~~~i~vwd~~~~--~~--~~~------~~~~~~V~~l~~~~-~~~~l~sg~~d  317 (513)
                      ..|..+++.+.|.|+..    -+.+.+++.+++|.+...  +.  ...      .++..++++.+|+. +-++|.+.+-|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            56888999999999763    233445568999988742  21  111      12556799999997 56899999999


Q ss_pred             CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      .++.|||+..+.....-..+.+|..+|..|+|..                                 ..-+.||+.+.||
T Consensus       173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~---------------------------------~s~~~FASvgaDG  219 (364)
T KOG0290|consen  173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK---------------------------------GSRDVFASVGADG  219 (364)
T ss_pred             CeEEEEEEeeccccceeeEEEecCcceeEEEecc---------------------------------CccceEEEecCCC
Confidence            9999999998733221225778888888877721                                 2356899999999


Q ss_pred             eEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCC-CCEEEEEeCC-CcEEEEeCCCC-eEEEEecCCCCCeEEEEEcC
Q 037288          398 TVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGED-CKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       398 ~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~D-g~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p  473 (513)
                      .|++||+|  ... ..-.|+.....-.-++++|++. -+++++-..| ..|.|-|++.. .++..+..|.+.|++++|.|
T Consensus       220 SvRmFDLR--~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP  297 (364)
T KOG0290|consen  220 SVRMFDLR--SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP  297 (364)
T ss_pred             cEEEEEec--ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence            99999999  444 3444554443334577888875 4677775554 46999999974 57888999999999999999


Q ss_pred             C-CceEEeeCCCee
Q 037288          474 Q-RSMGPQIEGKIH  486 (513)
Q Consensus       474 ~-~~~~~t~~~~~~  486 (513)
                      . ...++|++.|..
T Consensus       298 hS~~hictaGDD~q  311 (364)
T KOG0290|consen  298 HSSSHICTAGDDCQ  311 (364)
T ss_pred             CCCceeeecCCcce
Confidence            9 677888887766

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=4.8e-14  Score=133.88  Aligned_cols=217  Identities=14%  Similarity=0.118  Sum_probs=151.3

Q ss_pred             cEEEEEEcCCCCEEEE--EeCCeEEEEECCC--CcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          258 TVWTADFCTNPSQAVI--GTNLGAAMVDMET--GMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s--~s~~~i~vwd~~~--~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      .+..+.|+....+++.  ++|..|++|.-..  ++...+-. ....-+|++......++++|+..+.|+|||++....  
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~--  113 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI--  113 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH--
Confidence            4889999876654332  2344578885432  22222211 222345665555668999999999999999995543  


Q ss_pred             ccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecC-CCceEEEEEcCCCC-EEEEEecCCeEE
Q 037288          333 SSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMP-SSISCLQSLQLYDQ-YFLASSMDGTVK  400 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~-~l~s~s~dg~i~  400 (513)
                       .+.+.+|...|+++.++.   .+++++       .....+.  ...++.++ +....++.+++..+ +|.+++.+|.|.
T Consensus       114 -hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  114 -HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             -hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--cccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence             568999999999999987   566555       1111111  23345554 44455667777765 455789999999


Q ss_pred             EEecCCCCccceEEe-cCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288          401 LYDHRLTTRGAVQSY-EGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       401 lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      +||..  ...++..+ +.|..+...  ++|+|. +.+|++.|.|..|.+||.+.......+.. +.|.+.|+|.+++.+|
T Consensus       191 lwDv~--g~sp~~~~~~~HsAP~~g--icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L  265 (673)
T KOG4378|consen  191 LWDVQ--GMSPIFHASEAHSAPCRG--ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYL  265 (673)
T ss_pred             EEecc--CCCcccchhhhccCCcCc--ceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEE
Confidence            99985  33355444 678887666  888885 56789999999999999998887777765 6789999999998777


Q ss_pred             EeeCCC
Q 037288          479 PQIEGK  484 (513)
Q Consensus       479 ~t~~~~  484 (513)
                      +.+...
T Consensus       266 ~aG~s~  271 (673)
T KOG4378|consen  266 CAGNSK  271 (673)
T ss_pred             EeecCC
Confidence            665544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.7e-13  Score=119.14  Aligned_cols=213  Identities=18%  Similarity=0.139  Sum_probs=144.3

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc------EEEEee-
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM------ASWVCR-  294 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~------~~~~~~-  294 (513)
                      ..|.+.++++.+..+-.. .+-. +..+...++|..+|+.++|+  ..+|.+|+|+.|+-|.-....      .++... 
T Consensus        30 ~~G~iav~sl~sl~s~sa-~~~g-k~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~  105 (325)
T KOG0649|consen   30 LFGDIAVLSLKSLDSGSA-EPPG-KLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKI  105 (325)
T ss_pred             CCCeEEEEEehhhhcccc-CCCC-CcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcC
Confidence            456666666554433211 1111 22466679999999999998  568889999889887544321      111111 


Q ss_pred             --eC-----CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288          295 --SK-----SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP  367 (513)
Q Consensus       295 --~~-----~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~  367 (513)
                        +.     -+|.++...|..+-|+.++.|+.++.||+.+++...   .+.+|++.|.++.-                  
T Consensus       106 P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYvH~vv~------------------  164 (325)
T KOG0649|consen  106 PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYVHSVVG------------------  164 (325)
T ss_pred             ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCcceeeeeee------------------
Confidence              22     348999999988766677799999999999998744   89999998887432                  


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc--e----eEEEEEEcCCCCEEEEEeC
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS--H----TRIQLGVDQSERFVMSGGE  441 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~--v----~~~~~~~s~~g~~l~sg~~  441 (513)
                                      ......+++|+.||++++||++  +.+.++++....++  .    ..+-.+..-++.||++|+ 
T Consensus       165 ----------------R~~~~qilsG~EDGtvRvWd~k--t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-  225 (325)
T KOG0649|consen  165 ----------------RNANGQILSGAEDGTVRVWDTK--TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-  225 (325)
T ss_pred             ----------------cccCcceeecCCCccEEEEecc--ccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-
Confidence                            2234568999999999999998  45566655422211  0    011134455688998877 


Q ss_pred             CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          442 DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       442 Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                      .-.+.+|++++.++...+.. ..++..+.|-.+-.+.+
T Consensus       226 Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~  262 (325)
T KOG0649|consen  226 GPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIG  262 (325)
T ss_pred             CCceeEEeccCCCceEEEec-ccceeEeeeecceEEEe
Confidence            45699999999998888765 45688888887644333

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.59  E-value=1e-13  Score=128.36  Aligned_cols=155  Identities=14%  Similarity=0.173  Sum_probs=122.4

Q ss_pred             eeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCcccc----ccccccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288          293 CRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGC----SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP  367 (513)
Q Consensus       293 ~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~  367 (513)
                      ..|.++|..++|+| +.+.||+|+.|.+|.||++-.+....    .+..|.+|...|--++|+|                
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP----------------  141 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP----------------  141 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc----------------
Confidence            35899999999999 45899999999999999987654322    1446777877777776655                


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEE
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI  447 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~v  447 (513)
                                       .-.+.|++++.|..|.+||+.  ....+.++. |.+.|+.  ++|+-||.+|++.+.|..|+|
T Consensus       142 -----------------tA~NVLlsag~Dn~v~iWnv~--tgeali~l~-hpd~i~S--~sfn~dGs~l~TtckDKkvRv  199 (472)
T KOG0303|consen  142 -----------------TAPNVLLSAGSDNTVSIWNVG--TGEALITLD-HPDMVYS--MSFNRDGSLLCTTCKDKKVRV  199 (472)
T ss_pred             -----------------cchhhHhhccCCceEEEEecc--CCceeeecC-CCCeEEE--EEeccCCceeeeecccceeEE
Confidence                             235788999999999999997  444666677 9988766  899999999999999999999


Q ss_pred             EeCCCCeEEEEecCCCC-CeEEEEEcCCCceEEeeCCCe
Q 037288          448 WSIRSGELVFEDKFSNS-VPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       448 wd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ||.++++++.+-..|.+ ....+.|-.++.++.|.-...
T Consensus       200 ~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~  238 (472)
T KOG0303|consen  200 IDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRM  238 (472)
T ss_pred             EcCCCCcEeeecccccCCCcceeEEeccCceeeeccccc
Confidence            99999999999866654 355566777766666554443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=3.9e-15  Score=149.21  Aligned_cols=226  Identities=15%  Similarity=0.145  Sum_probs=162.1

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +..+.+|.++|+|+.|...|.++++|+|+. ++||..+++.+..... |.+.|+.++.+....++++++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            445889999999999999999999999988 8999999999887776 77889999999888999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEe------Eeecc-cCcccceeEee-cCCCceEEEEEcCCC-----------
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNE------QWFEL-KANIWPSHTTF-MPSSISCLQSLQLYD-----------  387 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~------~w~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~-----------  387 (513)
                      .+..   +..+.+|++.|++++|+|.-.++      -||.+ .....+-.... ......+...+..++           
T Consensus       263 ~~~p---vsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  263 DGAP---VSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             CCch---HHHHhccccceeeeccCccccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            8876   55999999999999999922111      17766 21111100000 000111111111122           


Q ss_pred             --------------------------CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEe
Q 037288          388 --------------------------QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGG  440 (513)
Q Consensus       388 --------------------------~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~  440 (513)
                                                .+.+++-.+..+++|++.  ....++.+.+|...+..  +.++|-+ ...++++
T Consensus       340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~--~g~l~H~l~ghsd~~yv--Ld~Hpfn~ri~msag  415 (1113)
T KOG0644|consen  340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY--TGQLLHNLMGHSDEVYV--LDVHPFNPRIAMSAG  415 (1113)
T ss_pred             cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc--cchhhhhhcccccceee--eeecCCCcHhhhhcc
Confidence                                      223333344556667764  34466677788888877  8888855 5567999


Q ss_pred             CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      .||...|||+-.|.+++.+....+.+...+|++++..++-+
T Consensus       416 ~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  416 YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             CCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence            99999999999998888765445557778888886544433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.57  E-value=1.3e-13  Score=124.66  Aligned_cols=178  Identities=12%  Similarity=0.077  Sum_probs=133.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEEC-CCCcE---EEEee-----eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCC
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDM-ETGMA---SWVCR-----SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~-~~~~~---~~~~~-----~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~  327 (513)
                      +..+++|+|||.+|.+|-...|+++|+ +.|+-   ..++.     ..+-+.|++|+|-. ..+++|+....+-||.-..
T Consensus       160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            567899999999999999999999999 55541   11111     24558999999955 6999999999998888777


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEeecCC--CceEEEEEcCCCCEEEEEe
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTFMPS--SISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~s  394 (513)
                      +.+   +..+-+|.+.|+.+.|.+   .+++|.        ||++.........-.+-.  ...-..-+.|.++.|++|+
T Consensus       240 ~~p---l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~  316 (406)
T KOG2919|consen  240 RRP---LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD  316 (406)
T ss_pred             CCc---eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC
Confidence            765   558889999999999999   888887        999876533222222211  1111234678999999999


Q ss_pred             cCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCC
Q 037288          395 MDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGED  442 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D  442 (513)
                      .||.|++||+.  ..+ .+..+..|...+..  ++++|--.++++++..
T Consensus       317 tdG~V~vwdlk--~~gn~~sv~~~~sd~vNg--vslnP~mpilatssGq  361 (406)
T KOG2919|consen  317 TDGSVRVWDLK--DLGNEVSVTGNYSDTVNG--VSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCccEEEEecC--CCCCcccccccccccccc--eecCcccceeeeccCc
Confidence            99999999996  423 56777778877777  7888887777776653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.56  E-value=4.5e-14  Score=124.16  Aligned_cols=228  Identities=13%  Similarity=0.091  Sum_probs=152.6

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      .+.+++|...|+++.|..+++++ +| .-+-|++|++.+.+....++  +...|+.++--|+ ..+.+-++|+.+.+|++
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~rL~-sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANERLM-SGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI   84 (323)
T ss_pred             eeEeccccchheehhhccchhhh-cccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence            56788999999999998888744 55 44559999999998776666  4556999998887 45677789999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC-eEEEeE----e----ecccCcc---------c-----ceeEeecCCCceEEEE
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ----W----FELKANI---------W-----PSHTTFMPSSISCLQS  382 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~----w----~~~~~~~---------~-----~~~~~~~~~~v~~~~~  382 (513)
                      .....      ...|.-.+.++.|.+ .++...    |    +-+....         .     +.......+.+.|..+
T Consensus        85 a~s~~------i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   85 AYSAF------ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             cCcce------EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            87543      335566677777777 333332    1    1111000         0     0001111234444432


Q ss_pred             EcCCCC--EEEEEecCCeEEEEecCCCCc--------cceEEecCCCCc-------------------------------
Q 037288          383 LQLYDQ--YFLASSMDGTVKLYDHRLTTR--------GAVQSYEGHVNS-------------------------------  421 (513)
Q Consensus       383 ~~~~~~--~l~s~s~dg~i~lwd~~~~~~--------~~~~~~~~h~~~-------------------------------  421 (513)
                      -...+.  ++++|-.+|.|.+||+...+.        ..+..+..|..+                               
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            222333  455777899999999974200        001011111111                               


Q ss_pred             ---------------eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          422 ---------------HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       422 ---------------v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                                     +..  +.+-||++.++++|.|+.||||+.++..++..++.|.+.|++++|+|+..++|..+.|-.
T Consensus       239 gslq~~~e~~lknpGv~g--vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSG--VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             CcccccceEEecCCCccc--eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence                           122  445689999999999999999999999999999999999999999999777777666643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.56  E-value=1.7e-13  Score=124.11  Aligned_cols=161  Identities=17%  Similarity=0.198  Sum_probs=128.0

Q ss_pred             eccccCcEEEEEEcC-----CCCEEEEEeCCeEEEEECCCCcEEEEe---e---eCCCeEEEEEecCC----cEEEEEeC
Q 037288          252 VASFKCTVWTADFCT-----NPSQAVIGTNLGAAMVDMETGMASWVC---R---SKSDILAQQVIHSG----NVVLCGFR  316 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~-----~g~~l~s~s~~~i~vwd~~~~~~~~~~---~---~~~~V~~l~~~~~~----~~l~sg~~  316 (513)
                      ...|+.+|..++|++     +.+.+|+.+.+.+.+|.....--+..+   .   +......++|+-|.    .++++|+.
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            567889999999985     345677777788888876543222222   2   45567888888643    47899999


Q ss_pred             CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          317 NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       317 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      -|.|+|.|+.+++.   .+.+.+|...|..+.++|                                 .+.++++++|.|
T Consensus       114 ~GvIrVid~~~~~~---~~~~~ghG~sINeik~~p---------------------------------~~~qlvls~SkD  157 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQC---SKNYRGHGGSINEIKFHP---------------------------------DRPQLVLSASKD  157 (385)
T ss_pred             eeEEEEEecchhhh---ccceeccCccchhhhcCC---------------------------------CCCcEEEEecCC
Confidence            99999999998876   448889988888876654                                 357899999999


Q ss_pred             CeEEEEecCCCCccceEEe---cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          397 GTVKLYDHRLTTRGAVQSY---EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~---~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      ..|++|+++  +..++..|   .||.+.|..  ++|+++|.+|+++|.|.++++|++..
T Consensus       158 ~svRlwnI~--~~~Cv~VfGG~egHrdeVLS--vD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  158 HSVRLWNIQ--TDVCVAVFGGVEGHRDEVLS--VDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ceEEEEecc--CCeEEEEecccccccCcEEE--EEEcCCCCeeeccCCcceEEEEecCh
Confidence            999999997  55577666   689988755  99999999999999999999999974

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=2e-13  Score=132.03  Aligned_cols=245  Identities=12%  Similarity=0.131  Sum_probs=164.7

Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAM  281 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~v  281 (513)
                      ..+||...+++.+     ..+|.+.+|++..  .  ..........+.++.+|.++|.|++..+++..+.+|+ |++|+.
T Consensus       300 l~~~~sep~lit~-----sed~~lk~WnLqk--~--~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  300 LAFHPSEPVLITA-----SEDGTLKLWNLQK--A--KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             hhcCCCCCeEEEe-----ccccchhhhhhcc--c--CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence            3344554555433     3588888888832  1  1112223346889999999999999999999999885 666999


Q ss_pred             EECCCC-------c----EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288          282 VDMETG-------M----ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN  350 (513)
Q Consensus       282 wd~~~~-------~----~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  350 (513)
                      |++...       .    .-.+.+|...|+.+++++....|++++.||+++.|+...... .++..-.. .+.-.++++.
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e-~g~Plsvd~~  448 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKE-HGYPLSVDRT  448 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccc-cCCcceEeec
Confidence            965421       1    123445889999999999988999999999999999877665 21222222 2333444443


Q ss_pred             C-----eEEE---eEeecccCcccceeEe------ecC---CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE
Q 037288          351 D-----RVTN---EQWFELKANIWPSHTT------FMP---SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ  413 (513)
Q Consensus       351 ~-----~~~s---~~w~~~~~~~~~~~~~------~~~---~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~  413 (513)
                      .     .+.+   +.+....-.......+      ..+   ..+.- +...|.....+++..|+.|+++|..  ...++.
T Consensus       449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~-vVs~~~~~~~~~~hed~~Ir~~dn~--~~~~l~  525 (577)
T KOG0642|consen  449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK-VVSHPTADITFTAHEDRSIRFFDNK--TGKILH  525 (577)
T ss_pred             cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce-EEecCCCCeeEecccCCceeccccc--ccccch
Confidence            3     1111   1111111111000011      111   12333 3456677899999999999999986  445888


Q ss_pred             EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC
Q 037288          414 SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN  463 (513)
Q Consensus       414 ~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~  463 (513)
                      ....|...+++  +++.|+|-+|++|+.||.+++|.+....++.....|.
T Consensus       526 s~~a~~~svts--lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  526 SMVAHKDSVTS--LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             heeeccceecc--eeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            88999999888  8889999999999999999999998888877765543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.55  E-value=3.4e-13  Score=132.34  Aligned_cols=194  Identities=13%  Similarity=0.172  Sum_probs=136.7

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCC--------cEEEEe--------------------------
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETG--------MASWVC--------------------------  293 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~--------~~~~~~--------------------------  293 (513)
                      ++++++|.+.|+|++|+.||+.+|+|+.+ .|.+|+-.-.        ..+...                          
T Consensus        46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~  125 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS  125 (1081)
T ss_pred             ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence            57799999999999999999999999654 5899975421        011100                          


Q ss_pred             --e--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--------eEEEeEeec-
Q 037288          294 --R--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--------RVTNEQWFE-  360 (513)
Q Consensus       294 --~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--------~~~s~~w~~-  360 (513)
                        +  ....|.+++|..||.+++.|-.||+|.+-+-....... +..--+...+|.+++|+|        .+....|.. 
T Consensus       126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~-I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK-IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE-EeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence              0  12357889999999999999999999998655444433 556667899999999999        222222432 


Q ss_pred             -----ccCcccc-eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC
Q 037288          361 -----LKANIWP-SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER  434 (513)
Q Consensus       361 -----~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~  434 (513)
                           ..|+... .+.+  .-...|+ .+-++|.+++.|+.|+.+++|--   +.-.+.+.-.....+  +.+...|++.
T Consensus       205 LSFy~LsG~~Igk~r~L--~FdP~Ci-sYf~NGEy~LiGGsdk~L~~fTR---~GvrLGTvg~~D~WI--WtV~~~PNsQ  276 (1081)
T KOG1538|consen  205 LSFYQLSGKQIGKDRAL--NFDPCCI-SYFTNGEYILLGGSDKQLSLFTR---DGVRLGTVGEQDSWI--WTVQAKPNSQ  276 (1081)
T ss_pred             eEEEEecceeecccccC--CCCchhh-eeccCCcEEEEccCCCceEEEee---cCeEEeeccccceeE--EEEEEccCCc
Confidence                 2222211 1111  1123343 55679999999999999999974   333555555445555  4488899999


Q ss_pred             EEEEEeCCCcEEEEeCC
Q 037288          435 FVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       435 ~l~sg~~Dg~v~vwd~~  451 (513)
                      .++.|+.||+|-.|++-
T Consensus       277 ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  277 YVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eEEEEEccCeeehhhhH
Confidence            99999999999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.53  E-value=7.1e-14  Score=129.89  Aligned_cols=192  Identities=14%  Similarity=0.172  Sum_probs=142.2

Q ss_pred             CcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCc------EEE----EeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          257 CTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGM------ASW----VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       257 ~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~------~~~----~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      .+|..+.|.++.. .+++|+ |..|++|-+..+.      .+.    +.+|+..|+++.|+|+|.+|++|+.+|.|.+|-
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            5899999999776 888774 5569999776542      121    123888999999999999999999999999997


Q ss_pred             CCCCccc-------------cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288          325 VRKRQRG-------------CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       325 ~~~~~~~-------------~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  391 (513)
                      ...-...             ...+.+.+|...|..                                 + +|++++++++
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd---------------------------------L-~Ws~d~~~l~  139 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD---------------------------------L-AWSPDSNFLV  139 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhh---------------------------------h-hccCCCceee
Confidence            6621110             001223334444433                                 3 5677999999


Q ss_pred             EEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----------
Q 037288          392 ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK-----------  460 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~-----------  460 (513)
                      +++.|..+++||++  ....+..+.+|...+..  ++|+|.++++++-+.|...+.+++...+.++...           
T Consensus       140 s~s~dns~~l~Dv~--~G~l~~~~~dh~~yvqg--vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVH--AGQLLAILDDHEHYVQG--VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             eeeccceEEEEEec--cceeEeeccccccccce--eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence            99999999999998  56688888999988877  8999999999999999988888776544333211           


Q ss_pred             --------CC----CCCeEEEEEcCCCceEEeeCCCee
Q 037288          461 --------FS----NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       461 --------~~----~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                              .|    .+-...++|+|++.++++-.+-+.
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~  253 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK  253 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence                    11    123566789999998888877766

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.7e-13  Score=128.34  Aligned_cols=187  Identities=10%  Similarity=0.058  Sum_probs=131.2

Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEECCCCcE-EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          260 WTADFCTNPSQAVIGT-NLGAAMVDMETGMA-SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~-~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      .+++|+.+|..+++|+ |+.+|||+..+... .....|+..|.++.|+|||++|++-+.| ..+||+.+++....   ..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---RK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---hc
Confidence            7899999999999884 66699999665554 3444589999999999999999999999 99999999885433   22


Q ss_pred             cc--cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-----CEEEEEecCCeEEEEecCCCCcc
Q 037288          338 RR--HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-----QYFLASSMDGTVKLYDHRLTTRG  410 (513)
Q Consensus       338 ~~--h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~s~s~dg~i~lwd~~~~~~~  410 (513)
                      ..  -...+..+                                  -|+.++     ..++.....+.|..||+...+..
T Consensus       224 t~~~k~~~~~~c----------------------------------RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~  269 (398)
T KOG0771|consen  224 TPFSKDEMFSSC----------------------------------RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS  269 (398)
T ss_pred             CCcccchhhhhc----------------------------------eecccCCCceEEEEEecCCCCceeEEEeeeeccc
Confidence            21  11111111                                  222233     22233334566777776432221


Q ss_pred             ---ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          411 ---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       411 ---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                         ...+...-.+.+++  ++++++|++++.|+.||.|-|++..+.+.++-. +.|...|+.+.|+|+...+++.+.+..
T Consensus       270 ~~l~~~~~~~~~~siSs--l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~  347 (398)
T KOG0771|consen  270 NFLRLRKKIKRFKSISS--LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE  347 (398)
T ss_pred             cccchhhhhhccCccee--EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence               11111112234555  889999999999999999999999998887765 568889999999999777776665544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.6e-13  Score=131.95  Aligned_cols=203  Identities=16%  Similarity=0.123  Sum_probs=140.3

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecC--CcEEEEEeCCCeEEEEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHS--GNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd  324 (513)
                      ..+.||++.|+|++|+.+|.+|++|+|+. +.|||....+.+..+.  |...|++++|-|.  ..++++|..|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            45899999999999999999999999998 9999998888777665  8888999999994  47999999999999999


Q ss_pred             CCCCcccc-------ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecC
Q 037288          325 VRKRQRGC-------SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMD  396 (513)
Q Consensus       325 ~~~~~~~~-------~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~d  396 (513)
                      +...+...       +...+..|...|..                                 + +..|++ +.|.+++.|
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKr---------------------------------i-a~~p~~PhtfwsasED  169 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKR---------------------------------I-ATAPNGPHTFWSASED  169 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhh---------------------------------e-ecCCCCCceEEEecCC
Confidence            98543211       01223333333322                                 2 223444 889999999


Q ss_pred             CeEEEEecCCCCcc-----ceEEe-cCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC--------Ce-------
Q 037288          397 GTVKLYDHRLTTRG-----AVQSY-EGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRS--------GE-------  454 (513)
Q Consensus       397 g~i~lwd~~~~~~~-----~~~~~-~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~--------~~-------  454 (513)
                      |+|+-+|+|.+...     +...+ .-+...+...++.++|. ..+|+.|+.|-..++||.+.        +.       
T Consensus       170 GtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~  249 (758)
T KOG1310|consen  170 GTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPK  249 (758)
T ss_pred             cceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCc
Confidence            99999999942111     11111 12233344455888886 56889999999999999421        11       


Q ss_pred             ---EEEEe-cCC-----------CCCeEEEEEcCCC-ceEEeeCCCee
Q 037288          455 ---LVFED-KFS-----------NSVPSAVCWRTQR-SMGPQIEGKIH  486 (513)
Q Consensus       455 ---~~~~~-~~~-----------~~~v~~v~~~p~~-~~~~t~~~~~~  486 (513)
                         ++.-+ .+|           -..++-++|+|++ .+|++-+++..
T Consensus       250 ~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhV  297 (758)
T KOG1310|consen  250 DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHV  297 (758)
T ss_pred             ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEE
Confidence               11111 111           0125678899995 57777777655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=9.9e-13  Score=119.86  Aligned_cols=218  Identities=11%  Similarity=0.067  Sum_probs=142.4

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEecccc-CcEEEEEEcCCCCEEEEEeCC-----eEEEEECCCCcE-EEE
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFK-CTVWTADFCTNPSQAVIGTNL-----GAAMVDMETGMA-SWV  292 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~g~~l~s~s~~-----~i~vwd~~~~~~-~~~  292 (513)
                      +..+|.+.+|++.......          .+...+|. .+..|++.+.+++.+++|...     .+.+||++..+. +..
T Consensus        90 ~ssDG~Vr~wD~Rs~~e~a----------~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~  159 (376)
T KOG1188|consen   90 CSSDGTVRLWDIRSQAESA----------RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ  159 (376)
T ss_pred             eccCCeEEEEEeecchhhh----------heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence            4478999999987554432          22344444 577888888889999988642     389999997765 444


Q ss_pred             ee--eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------e
Q 037288          293 CR--SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------W  358 (513)
Q Consensus       293 ~~--~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w  358 (513)
                      +.  |...|+++.|+|.. ++|++|+.||.|.+||+......-.+.....|...|..+.|..    ++..-+       |
T Consensus       160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~  239 (376)
T KOG1188|consen  160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIY  239 (376)
T ss_pred             hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEE
Confidence            43  88999999999965 8999999999999999987654333556667788899999976    333332       6


Q ss_pred             ecccCcccceeEee-----------cCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCc----cceEEecCC-CCc
Q 037288          359 FELKANIWPSHTTF-----------MPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTR----GAVQSYEGH-VNS  421 (513)
Q Consensus       359 ~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~----~~~~~~~~h-~~~  421 (513)
                      +...+.........           .-..+... ..+.+...++.++. -+...++-+.....    ..+..+.+| ..-
T Consensus       240 ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei  318 (376)
T KOG1188|consen  240 ELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI  318 (376)
T ss_pred             EccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence            66655421000000           00111111 11334455555554 56666654431111    155566664 444


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          422 HTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       422 v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      |..  +.|...+..+++||+||.+.+|..
T Consensus       319 VR~--i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  319 VRD--ILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             HHH--HhhhcccceeeccCCCceEEEEec
Confidence            433  677788899999999999999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3.4e-12  Score=129.55  Aligned_cols=210  Identities=7%  Similarity=-0.004  Sum_probs=143.1

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEE-
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTV-  323 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iw-  323 (513)
                      ..+..|...+....|+|||+.|+.++.+    .|.+||+.+++...+........+++|+|||+.|+.+ +.+|.+.|| 
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence            3466788899999999999999876432    4999999988754444344445678999999877765 468876655 


Q ss_pred             -ECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288          324 -DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       324 -d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  391 (513)
                       |+.++.    ...+..+...+....|+|   .++..+        |......... ..+... . .+ ..++|+|++|+
T Consensus       277 ~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~-~-~~-~~~SpDG~~ia  348 (429)
T PRK01742        277 MGANGGT----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGR-G-YS-AQISADGKTLV  348 (429)
T ss_pred             EECCCCC----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecCC-C-CC-ccCCCCCCEEE
Confidence             665443    345666777788899999   344333        4443221111 112111 1 22 46899999999


Q ss_pred             EEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEEEEecCCCCCeEEE
Q 037288          392 ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI--RSGELVFEDKFSNSVPSAV  469 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~--~~~~~~~~~~~~~~~v~~v  469 (513)
                      .++.++ +.+||+.  ... ...+..+. ...  ...|+|+|++|+.++.++.+.+|.+  .+|..+..+..+.+.+...
T Consensus       349 ~~~~~~-i~~~Dl~--~g~-~~~lt~~~-~~~--~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p  421 (429)
T PRK01742        349 MINGDN-VVKQDLT--SGS-TEVLSSTF-LDE--SPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP  421 (429)
T ss_pred             EEcCCC-EEEEECC--CCC-eEEecCCC-CCC--CceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence            888765 5569985  322 22232221 112  2679999999999999999988876  3688888888888888999


Q ss_pred             EEcCC
Q 037288          470 CWRTQ  474 (513)
Q Consensus       470 ~~~p~  474 (513)
                      +|+|.
T Consensus       422 ~wsp~  426 (429)
T PRK01742        422 AWSPY  426 (429)
T ss_pred             ccCCC
Confidence            99986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=7e-13  Score=120.82  Aligned_cols=184  Identities=15%  Similarity=0.153  Sum_probs=139.8

Q ss_pred             EEE-EEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccccccC-cCe
Q 037288          270 QAV-IGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHR-IPY  344 (513)
Q Consensus       270 ~l~-s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v  344 (513)
                      .+| +.+++.|++||..+++.+..+. ++..+..+.|..  ..+.+.+|+.||+|++||+|.....+ ......+. .+.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~~~~~~~f  120 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-RISWTQQSGTPF  120 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-heeccCCCCCcc
Confidence            344 4488889999999988777666 666688899987  45899999999999999999988766 55566665 567


Q ss_pred             EEEeeCC--eEEE-eE-----------eecccCcc-cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288          345 SRLQRND--RVTN-EQ-----------WFELKANI-WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR  409 (513)
Q Consensus       345 ~~v~~~~--~~~s-~~-----------w~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~  409 (513)
                      .+++.+-  .++. |.           ||.+..+. .....-.|.+.|+++.+.+.+.++|++||.||-|.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7777753  3333 33           99988765 34444568889999988888899999999999999999963322


Q ss_pred             c--ceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          410 G--AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       410 ~--~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      .  .+.++. |...|..  +.|..++ +.|.+-+...+..+|++..+....
T Consensus       201 eDaL~~viN-~~sSI~~--igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  201 EDALLHVIN-HGSSIHL--IGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             hhhHHHhhc-ccceeee--eeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            2  444444 6666666  7887776 458888999999999998876443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.49  E-value=2.1e-13  Score=133.03  Aligned_cols=187  Identities=15%  Similarity=0.135  Sum_probs=137.2

Q ss_pred             EEcCCCCEEE---EEeCCeEEEEECCCCc-----EEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCcccc-
Q 037288          263 DFCTNPSQAV---IGTNLGAAMVDMETGM-----ASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGC-  332 (513)
Q Consensus       263 ~~s~~g~~l~---s~s~~~i~vwd~~~~~-----~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~-  332 (513)
                      .|+.+...+|   +|+.+.|-|+++...-     .+-.+.....|+.+.|+| |...|++++.||.|++|.+..+.... 
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            3445556665   3445669999987532     222333566799999999 66899999999999999986543211 


Q ss_pred             ---ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288          333 ---SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR  409 (513)
Q Consensus       333 ---~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~  409 (513)
                         .-..+.+|...|+++.|+|                                 --.+.|++++.|.+|++||++  ..
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHP---------------------------------LAadvLa~asyd~Ti~lWDl~--~~  710 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHP---------------------------------LAADVLAVASYDSTIELWDLA--NA  710 (1012)
T ss_pred             cCCcceeeecccceEEEEEecc---------------------------------hhhhHhhhhhccceeeeeehh--hh
Confidence               1345778888888877766                                 135678999999999999998  44


Q ss_pred             cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288          410 GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .....+.+|.+.|..  ++|+|+|+.+++.|.||+|++|+-++++ ++++-++. +..-..+.|.-++.+++..+.|-.
T Consensus       711 ~~~~~l~gHtdqIf~--~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  711 KLYSRLVGHTDQIFG--IAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhheeccCcCceeE--EEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            466788999999866  9999999999999999999999998865 44442221 223345778878777776666654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=3.3e-11  Score=105.05  Aligned_cols=192  Identities=14%  Similarity=0.140  Sum_probs=129.5

Q ss_pred             CcEEEEEEcCC-CCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          257 CTVWTADFCTN-PSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       257 ~~V~~~~~s~~-g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      -.|+++-+.|. +.++.+|+|+.++-||+++|+..+.++ |...|.++.--.....+++|+.||++++||.++++... +
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~-~  193 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS-M  193 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE-E
Confidence            36889999874 556667788889999999999888887 77779999875555678999999999999999998754 1


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEE
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~  414 (513)
                      .....|...                          .-.+.+..  +.++..+...++.|+ ...+.+|.+|..+..++..
T Consensus       194 ie~yk~~~~--------------------------lRp~~g~w--igala~~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  194 IEPYKNPNL--------------------------LRPDWGKW--IGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             eccccChhh--------------------------cCcccCce--eEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence            111111110                          00111111  123444677777665 5689999999544335666


Q ss_pred             ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       415 ~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +.+|...     +.|.  +..++++++.+.|.-|-+ +|.+-..........+...|+....-+++..+.-.
T Consensus       245 ipa~v~~-----v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~  308 (325)
T KOG0649|consen  245 IPARVHL-----VDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSN  308 (325)
T ss_pred             cccceeE-----eeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccce
Confidence            6666433     4554  567899999999999986 45554455554555777778777666666555433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.48  E-value=7.3e-13  Score=129.39  Aligned_cols=226  Identities=13%  Similarity=0.122  Sum_probs=153.2

Q ss_pred             cceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCe-EEEEECCCC
Q 037288          210 RHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLG-AAMVDMETG  287 (513)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i~vwd~~~~  287 (513)
                      ..+.+.+.|   ..|.+.+|.+..|-..-.        .+..-.-....|.++.|.| |...||++.|++ |++|.+..+
T Consensus       592 ~rvAVPL~g---~gG~iai~el~~PGrLPD--------gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  592 KRVAVPLAG---SGGVIAIYELNEPGRLPD--------GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             ceEEEEecC---CCceEEEEEcCCCCCCCc--------ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            334444442   346777788775533211        0111112335799999999 777888776655 999988754


Q ss_pred             c-------EEEE-eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEe
Q 037288          288 M-------ASWV-CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQW  358 (513)
Q Consensus       288 ~-------~~~~-~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w  358 (513)
                      -       +... ..|...|+++.|+|-. ++|++++.|.+|++||+++.+...   .+.+|.+.|..++|         
T Consensus       661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~---~l~gHtdqIf~~AW---------  728 (1012)
T KOG1445|consen  661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS---RLVGHTDQIFGIAW---------  728 (1012)
T ss_pred             CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh---eeccCcCceeEEEE---------
Confidence            2       2223 3477889999999954 899999999999999999988644   89999999998655         


Q ss_pred             ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288          359 FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVM  437 (513)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~  437 (513)
                                               +|+|+.+++.+.||+|++|..|  +.. ++..-.+..+ -...++.|.-||++++
T Consensus       729 -------------------------SpdGr~~AtVcKDg~~rVy~Pr--s~e~pv~Eg~gpvg-tRgARi~wacdgr~vi  780 (1012)
T KOG1445|consen  729 -------------------------SPDGRRIATVCKDGTLRVYEPR--SREQPVYEGKGPVG-TRGARILWACDGRIVI  780 (1012)
T ss_pred             -------------------------CCCCcceeeeecCceEEEeCCC--CCCCccccCCCCcc-CcceeEEEEecCcEEE
Confidence                                     5699999999999999999998  433 5554444333 2234467777899999


Q ss_pred             EEeCCC----cEEEEeCCCC--eEEEEecCCCC-CeEEEEEcCC-CceEEeeCCCee
Q 037288          438 SGGEDC----KLRIWSIRSG--ELVFEDKFSNS-VPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       438 sg~~Dg----~v~vwd~~~~--~~~~~~~~~~~-~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      +.|.|.    .|.+||..+-  .++.+....-+ .+.--.+.++ +.+|+|+-+|-.
T Consensus       781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~  837 (1012)
T KOG1445|consen  781 VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRF  837 (1012)
T ss_pred             EecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCce
Confidence            888764    6888887653  34443221111 1222344555 678888877755

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.48  E-value=3.3e-12  Score=112.54  Aligned_cols=148  Identities=15%  Similarity=0.276  Sum_probs=108.6

Q ss_pred             CCeEEEEEec-CC--cEEEEEeCCCeEEEEECCCCcccc-------ccccccccCcCeEEEeeCC------------eEE
Q 037288          297 SDILAQQVIH-SG--NVVLCGFRNGAIVTVDVRKRQRGC-------SSRAGRRHRIPYSRLQRND------------RVT  354 (513)
Q Consensus       297 ~~V~~l~~~~-~~--~~l~sg~~dg~i~iwd~~~~~~~~-------~~~~~~~h~~~v~~v~~~~------------~~~  354 (513)
                      +.++|..+.. ++  -++++|-++|.|.+||+.++....       .......|..+|.+++|.+            .++
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            3467776543 23  367788889999999999863211       1234567999999999987            222


Q ss_pred             EeE--eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC
Q 037288          355 NEQ--WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS  432 (513)
Q Consensus       355 s~~--w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~  432 (513)
                      .-+  |+...-+.....++++++ +.. +.+.||++.||+++.|+.|++|..+  +..++..++-|...+.+  ++|+|+
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpG-v~g-vrIRpD~KIlATAGWD~RiRVyswr--tl~pLAVLkyHsagvn~--vAfspd  304 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPG-VSG-VRIRPDGKILATAGWDHRIRVYSWR--TLNPLAVLKYHSAGVNA--VAFSPD  304 (323)
T ss_pred             eeeeccccCcccccceEEecCCC-ccc-eEEccCCcEEeecccCCcEEEEEec--cCCchhhhhhhhcceeE--EEeCCC
Confidence            222  333333333344444433 222 4678999999999999999999998  66689999999988877  999999


Q ss_pred             CCEEEEEeCCCcEEEEeC
Q 037288          433 ERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       433 g~~l~sg~~Dg~v~vwd~  450 (513)
                      ...+++++.|+.|-+|++
T Consensus       305 ~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  305 CELMAAASKDARISLWKL  322 (323)
T ss_pred             CchhhhccCCceEEeeec
Confidence            999999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=5.6e-13  Score=128.92  Aligned_cols=235  Identities=9%  Similarity=0.022  Sum_probs=159.3

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCC--------cEEEEee-eCCCeEEEEEecCCcEEEEEeCCCe
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETG--------MASWVCR-SKSDILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~--------~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~  319 (513)
                      .++..|.+.|..++|++....|++++.++ +++|+++..        +++.++. |.++|.|++..+.+..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            36889999999999999988999887655 899999321        2455554 9999999999999999999999999


Q ss_pred             EEEEECCCC-------ccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEE
Q 037288          320 IVTVDVRKR-------QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQS  382 (513)
Q Consensus       320 i~iwd~~~~-------~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~  382 (513)
                      |+.|++-..       ....-...+.||.+.|+.++++.   ++++++       |....................++-.
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence            999965411       11111346889999999999998   788876       6655544310001111111222211


Q ss_pred             EcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCC--CCc---eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          383 LQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGH--VNS---HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       383 ~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h--~~~---v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      .+..-...++   +.....+++...... .+..+...  .+.   -....+..+|.+.+.+++..|+.|+++|..+++++
T Consensus       448 ~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  448 TSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             ccchhHhhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence            1111112222   233333333211211 22222211  111   11123667899999999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288          457 FEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE  487 (513)
Q Consensus       457 ~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~  487 (513)
                      +....|...++++++.|++.+|++...|-..
T Consensus       525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv  555 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSV  555 (577)
T ss_pred             hheeeccceecceeecCCCceEEeecCCcee
Confidence            9999999999999999999999999888653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.47  E-value=4.1e-13  Score=124.93  Aligned_cols=156  Identities=14%  Similarity=0.188  Sum_probs=125.4

Q ss_pred             eCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCcccc------ccccccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288          295 SKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGC------SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP  367 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~------~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~  367 (513)
                      .+.+|.++.|.++.. .+++|+.|..|++|-+.......      -+..|..|..+|+.                     
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~---------------------   70 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNV---------------------   70 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEE---------------------
Confidence            455699999998774 99999999999999886543321      12345555555555                     


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC--------C------CCccceEEecCCCCceeEEEEEEcCCC
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR--------L------TTRGAVQSYEGHVNSHTRIQLGVDQSE  433 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~--------~------~~~~~~~~~~~h~~~v~~~~~~~s~~g  433 (513)
                                   +.|+|+|+.|++|+.+|.|.+|-..        .      ......+.+.+|...++.  ++|+|++
T Consensus        71 -------------vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd--L~Ws~d~  135 (434)
T KOG1009|consen   71 -------------VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD--LAWSPDS  135 (434)
T ss_pred             -------------EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh--hhccCCC
Confidence                         4667799999999999999999754        1      001134567789888866  9999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          434 RFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       434 ~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .++++|+.|..+++||+..|+++..+..|..-|..++|.|-..++++-+.|-+
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~  188 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH  188 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence            99999999999999999999999999999999999999999888887777753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.47  E-value=6.6e-12  Score=113.64  Aligned_cols=221  Identities=10%  Similarity=0.071  Sum_probs=161.5

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCc---EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC-CC
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGM---ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV-RK  327 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~---~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~-~~  327 (513)
                      -...+|+|.+|++|+..+|.+-+. .|.||......   ...++. |...|+.|+|+|..+.|++++.|..-++|.. ..
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            344799999999999999988665 58888876554   344444 7788999999999999999999999999998 44


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEeec--CCCceEEEEEcCCCCEEEEEe
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      +...+ .-.+..++.+.++|.|+|   .|++|+        |...+...+..+.++.  .+.|.++ .++|++-+|++|+
T Consensus        88 ~~Wkp-tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl-dWhpnnVLlaaGs  165 (361)
T KOG1523|consen   88 GTWKP-TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL-DWHPNNVLLAAGS  165 (361)
T ss_pred             Ceecc-ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee-eccCCcceecccc
Confidence            44444 557889999999999999   666666        4444555544444433  4677776 6778999999999


Q ss_pred             cCCeEEEEecCCC------------Cc---c-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEE
Q 037288          395 MDGTVKLYDHRLT------------TR---G-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVF  457 (513)
Q Consensus       395 ~dg~i~lwd~~~~------------~~---~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~  457 (513)
                      .|+.++++.....            ++   + .+..+....+.+  ..+.|+|+|..|+-.+.|.+|.+=|..... .+.
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv--h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~  243 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV--HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ  243 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce--eeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence            9999999964210            00   0 222333333444  448999999999999999999999987664 444


Q ss_pred             EecCCCCCeEEEEEcCCCceE
Q 037288          458 EDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       458 ~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      ......-|..++.|-.+..++
T Consensus       244 ~~~~~~lP~ls~~~ise~~vv  264 (361)
T KOG1523|consen  244 SVATAQLPLLSVSWISENSVV  264 (361)
T ss_pred             chhhccCCceeeEeecCCcee
Confidence            444444667777776554333

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=2.6e-11  Score=111.84  Aligned_cols=184  Identities=13%  Similarity=0.144  Sum_probs=132.7

Q ss_pred             cEEEEEEcCCCCEEEEE-eCC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          258 TVWTADFCTNPSQAVIG-TNL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      .|-.+-|+  ..++|.. .++  .+++.++..+..+..+.....|.+|.++.+  .|++.-.+ .|+|||+++.+...++
T Consensus        48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI  122 (391)
T KOG2110|consen   48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTI  122 (391)
T ss_pred             EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhh
Confidence            34444454  3355533 233  289999998888887888899999999743  44444443 4999999998875533


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCccce
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~~~  412 (513)
                      .....+...+.+                                  ...++.+.+++.-+  ..|.|.+||..  ...++
T Consensus       123 ~t~~~n~~gl~A----------------------------------lS~n~~n~ylAyp~s~t~GdV~l~d~~--nl~~v  166 (391)
T KOG2110|consen  123 ETTPPNPKGLCA----------------------------------LSPNNANCYLAYPGSTTSGDVVLFDTI--NLQPV  166 (391)
T ss_pred             hccCCCccceEe----------------------------------eccCCCCceEEecCCCCCceEEEEEcc--cceee
Confidence            333333332322                                  13333455777533  36999999997  55689


Q ss_pred             EEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEecCCC--CCeEEEEEcCCCceEEeeCCC
Q 037288          413 QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-LRIWSIRSGELVFEDKFSN--SVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       413 ~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-v~vwd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ..+..|.+.+.+  ++|+++|.+||+++..|+ |||+.+.+|+.+.+++...  ..|.+++|+|+..+++.++..
T Consensus       167 ~~I~aH~~~lAa--lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  167 NTINAHKGPLAA--LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             eEEEecCCceeE--EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence            999999999987  999999999999999997 6999999999999987643  347899999998777666543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.46  E-value=1.8e-12  Score=124.66  Aligned_cols=195  Identities=15%  Similarity=0.173  Sum_probs=125.3

Q ss_pred             CCCCEEEEE-eCCeEEEEECCCCcEEEEee-----eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccccccccc
Q 037288          266 TNPSQAVIG-TNLGAAMVDMETGMASWVCR-----SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGR  338 (513)
Q Consensus       266 ~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-----~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  338 (513)
                      +.+.-+..| ..+.|.+.|....+..+++.     .+..|+|+.|-|.+ ..++++-.+|.+.+||........ --...
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t-~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT-APSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC-CCccc
Confidence            455555566 44557766655433222222     34679999999955 678888899999999874221110 00111


Q ss_pred             ccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288          339 RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       339 ~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                      .+..+=       .+....|...... .|...... ...+.. .+|++||++||+.+.||.++|||..  ....+..++.
T Consensus       262 ~~k~~~-------~f~i~t~ksk~~r-NPv~~w~~~~g~in~-f~FS~DG~~LA~VSqDGfLRvF~fd--t~eLlg~mkS  330 (636)
T KOG2394|consen  262 ALKDGD-------QFAILTSKSKKTR-NPVARWHIGEGSINE-FAFSPDGKYLATVSQDGFLRIFDFD--TQELLGVMKS  330 (636)
T ss_pred             ccCCCC-------eeEEeeeeccccC-CccceeEeccccccc-eeEcCCCceEEEEecCceEEEeecc--HHHHHHHHHh
Confidence            111000       0000001111000 11222222 223333 4788999999999999999999996  3334444444


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .-+..  ++++|||||++|++||+|--|.||++..++.+..-.+|.++|+.|+|.|-
T Consensus       331 YFGGL--LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  331 YFGGL--LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY  385 (636)
T ss_pred             hccce--EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc
Confidence            44444  45999999999999999999999999999999999999999999999983

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.44  E-value=1.2e-10  Score=117.13  Aligned_cols=198  Identities=17%  Similarity=0.274  Sum_probs=150.3

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEEEEee-eCCCe
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      ++.+.+|+...           .......+..|...|.+++|+|++..+++++  ++.+++|++.++..+..+. |...|
T Consensus       133 d~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  201 (466)
T COG2319         133 DGTVKLWDLST-----------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV  201 (466)
T ss_pred             CccEEEEEecC-----------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence            55666666553           1223566889999999999999999888775  6669999999877766666 67889


Q ss_pred             EEEEEecCCc-EEEEEeCCCeEEEEECCCCccccccc-cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288          300 LAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSR-AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI  377 (513)
Q Consensus       300 ~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v  377 (513)
                      .+++|+|++. ++++++.|+.|++||...+..   +. .+.+|.... .                               
T Consensus       202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~-~-------------------------------  246 (466)
T COG2319         202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL---LRSTLSGHSDSV-V-------------------------------  246 (466)
T ss_pred             EEEEEcCCcceEEEEecCCCcEEEEECCCCcE---EeeecCCCCcce-e-------------------------------
Confidence            9999999997 666669999999998874433   22 234443322 1                               


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                         ..+++++.++++++.|+.+++||++.... .+..+.+|...+..  +.|+|++..+++++.|+.+.+|++.+.....
T Consensus       247 ---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         247 ---SSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLS--VAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             ---EeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEE--EEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence               25777888889999999999999973222 24555678777766  7899988888889999999999999888777


Q ss_pred             Eec--CCCCCeEEEEEc
Q 037288          458 EDK--FSNSVPSAVCWR  472 (513)
Q Consensus       458 ~~~--~~~~~v~~v~~~  472 (513)
                      ...  .|...+..+.|.
T Consensus       321 ~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         321 SLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             EeeecccCCceEEEEEC
Confidence            765  677778999994

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=7.9e-13  Score=125.66  Aligned_cols=240  Identities=16%  Similarity=0.165  Sum_probs=172.1

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecCC--cEEEEEeCCCeEEEEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHSG--NVVLCGFRNGAIVTVD  324 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~--~~l~sg~~dg~i~iwd  324 (513)
                      ..|..|.+.|+.+.|+..|..+++|+|+. |.+||..++.....+.  |...|..-.|-|..  ..+++.+.||.|++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            44889999999999999999999998876 9999998887665554  77778888898843  6788999999999887


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC----eEEEeE-------------------------------------------
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------------------------------------------  357 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------------------------------------------  357 (513)
                      +.........+.+..|.++|..++..|    .+++++                                           
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            654433222456677777777766555    333332                                           


Q ss_pred             -------------eecccCccc----------ceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc----
Q 037288          358 -------------WFELKANIW----------PSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR----  409 (513)
Q Consensus       358 -------------w~~~~~~~~----------~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~----  409 (513)
                                   |+.+.-+..          +.+... .+-.|+++ .++.++.-|+++-.|-.|+++.-.....    
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl-~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~  374 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL-VYSHDGSELLASYNDEDIYLFNKSMGDGSEPD  374 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE-EecCCccceeeeecccceEEeccccccCCCCC
Confidence                         111110000          000000 12245564 6776777777777888999995433222    


Q ss_pred             ------cceE-EecCCCCceeEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          410 ------GAVQ-SYEGHVNSHTRIQLGV-DQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       410 ------~~~~-~~~~h~~~v~~~~~~~-s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                            ..+. .|+||.+.-++..+.| -|...|+++|+.-|.|.||+-.+++.+..+.+....|+|+.-+|.-.+||++
T Consensus       375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence                  1223 4899998776655554 6788999999999999999999999999888777799999999999999999


Q ss_pred             CCCeeeeec
Q 037288          482 EGKIHEEFD  490 (513)
Q Consensus       482 ~~~~~~~~~  490 (513)
                      +-+..-.++
T Consensus       455 Gid~DVKIW  463 (559)
T KOG1334|consen  455 GIDHDVKIW  463 (559)
T ss_pred             CCccceeee
Confidence            998874433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.41  E-value=1.6e-11  Score=124.36  Aligned_cols=252  Identities=12%  Similarity=0.076  Sum_probs=152.4

Q ss_pred             eeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCc
Q 037288          122 RTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPS  201 (513)
Q Consensus       122 ~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~  201 (513)
                      ..+++++|+.+|.|.+|++..........+..          ..-.+...+..++|-.+.                    
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~----------~~~sh~~~v~~vvW~~~~--------------------  303 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA----------LEVSHSEPVTAVVWLQNE--------------------  303 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCCCccccc----------ccccCCcCeEEEEEeccC--------------------
Confidence            45799999999999999986554321111111          111122224455553220                    


Q ss_pred             cccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCe-E
Q 037288          202 CATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLG-A  279 (513)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i  279 (513)
                            .+ +-++.    ...+|.+..|+++.-.................-..-...+.+++|.+ +...++.|++.+ |
T Consensus       304 ------~~-~~f~s----~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v  372 (555)
T KOG1587|consen  304 ------HN-TEFFS----LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV  372 (555)
T ss_pred             ------CC-CceEE----EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence                  00 00111    12378888776553222211111111110000112234789999988 556788888877 4


Q ss_pred             EE---EECCCCc-----EE-EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC-CCccccccccccccCcCeEEEee
Q 037288          280 AM---VDMETGM-----AS-WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR-KRQRGCSSRAGRRHRIPYSRLQR  349 (513)
Q Consensus       280 ~v---wd~~~~~-----~~-~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~  349 (513)
                      .-   ++.....     .. ....|.+.|.++.++|=+..++..+.|.+|+||.-. ...+   +..+..+...|++++|
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAW  449 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEE
Confidence            33   2222222     11 222378899999999977544444449999999876 3333   4466667777888777


Q ss_pred             CCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE
Q 037288          350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV  429 (513)
Q Consensus       350 ~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~  429 (513)
                      +|                                 ...-.|+++..||.|.+||+.....+++.+...+....+.  +.|
T Consensus       450 Sp---------------------------------trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~--~~~  494 (555)
T KOG1587|consen  450 SP---------------------------------TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTR--VRW  494 (555)
T ss_pred             cC---------------------------------cCceEEEEEcCCCceehhhhhccccCCcccccccccccce--eec
Confidence            65                                 2345789999999999999985455577777655443333  678


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCC
Q 037288          430 DQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       430 s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      +++|+.|++|...|++.+|++..
T Consensus       495 s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  495 SPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCc
Confidence            88899999999999999999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=1.7e-11  Score=126.60  Aligned_cols=228  Identities=14%  Similarity=0.127  Sum_probs=158.3

Q ss_pred             cEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee----eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCc-
Q 037288          258 TVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR----SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQ-  329 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~-  329 (513)
                      .-..+.|+|-...++++. ...|++||.+.++...-+.    ....|+.+.+-.  |..++++|+.||.|+||+--... 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            456788888777777776 4569999999998877665    234588988864  44799999999999999754332 


Q ss_pred             -ccc---cccccccc----CcCeEEEeeCC---eE-EEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288          330 -RGC---SSRAGRRH----RIPYSRLQRND---RV-TNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       330 -~~~---~~~~~~~h----~~~v~~v~~~~---~~-~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  391 (513)
                       ...   ....+.++    .+.=.-++|..   .+ ++|.      ||.................++.+......|+.++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence             111   11122222    11113345554   33 3442      9988776554444455556677666666789999


Q ss_pred             EEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEE--ecCC---CC
Q 037288          392 ASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSER-FVMSGGEDCKLRIWSIRSGELVFE--DKFS---NS  464 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~~Dg~v~vwd~~~~~~~~~--~~~~---~~  464 (513)
                      +|..||.|++||.|..... .+..++.|...-..+.+.+.+.|- .|++|+.||.|++||++.......  ...|   ++
T Consensus      1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred             EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence            9999999999999976554 788889998873334466766553 599999999999999998422221  2222   34


Q ss_pred             CeEEEEEcCCCceEEeeCCCe
Q 037288          465 VPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       465 ~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ..+++..|+...++|+++...
T Consensus      1306 ~lTal~VH~hapiiAsGs~q~ 1326 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSAQL 1326 (1387)
T ss_pred             cceeeeeccCCCeeeecCcce
Confidence            599999999999999988643

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.39  E-value=9.4e-12  Score=112.64  Aligned_cols=188  Identities=12%  Similarity=0.068  Sum_probs=145.1

Q ss_pred             eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc-cccccccccccCcCeEEEeeCC---eEEEeE-------eec-cc
Q 037288          295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ-RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFE-LK  362 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~-~~  362 (513)
                      ...+|+|.+|++|+..++.+..+..|.||.....+ ... ..++..|...|+.|+|+|   +|++++       |.. ..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            45679999999999999999999999999988877 444 779999999999999999   899998       777 44


Q ss_pred             CcccceeEe-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce-E-EecCCCCceeEEEEEEcCCCCEEEEE
Q 037288          363 ANIWPSHTT-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV-Q-SYEGHVNSHTRIQLGVDQSERFVMSG  439 (513)
Q Consensus       363 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~-~-~~~~h~~~v~~~~~~~s~~g~~l~sg  439 (513)
                      +..++...+ ++...++++ .++|.++.||+|+....|.+|-+.....--+ + .-+.+...|++  ++|+|++-+|++|
T Consensus        88 ~~WkptlvLlRiNrAAt~V-~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s--ldWhpnnVLlaaG  164 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCV-KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS--LDWHPNNVLLAAG  164 (361)
T ss_pred             CeeccceeEEEeccceeeE-eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee--eeccCCcceeccc
Confidence            555555544 456666665 7899999999999999999998852111111 1 22334555555  9999999999999


Q ss_pred             eCCCcEEEEeCC------------------CCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          440 GEDCKLRIWSIR------------------SGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       440 ~~Dg~v~vwd~~------------------~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +.|+..+||+.-                  -|+++.++....+.+..+.|+|++..++=.+.|-.
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~  229 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST  229 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc
Confidence            999999999742                  23455555556788999999999877766665544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.39  E-value=5.7e-10  Score=109.59  Aligned_cols=248  Identities=8%  Similarity=0.044  Sum_probs=148.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECC-CCcE--EEEeeeC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDME-TGMA--SWVCRSK  296 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~-~~~~--~~~~~~~  296 (513)
                      .++.+.+|++.+.... .        .+..+ .+.+....++++|++++|++++  ++.|.+|++. ++..  .......
T Consensus        10 ~~~~I~~~~~~~~g~l-~--------~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~   79 (330)
T PRK11028         10 ESQQIHVWNLNHEGAL-T--------LLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP   79 (330)
T ss_pred             CCCCEEEEEECCCCce-e--------eeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC
Confidence            4577788877522110 0        11222 2335567889999999887663  4569999986 3443  2222233


Q ss_pred             CCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccc-cccccccccCcCeEEEeeCC---eEEEeE--------eeccc-
Q 037288          297 SDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRG-CSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELK-  362 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~-  362 (513)
                      .....++|+|+++.|++++. ++.|.+||+.+.... ..+..+. +......++++|   .+++..        |+... 
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            45778999999998888765 899999999743221 1012222 223456677887   443433        77654 


Q ss_pred             Ccccce----eEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCc--cceEEecCCC----CceeEEEEEEcC
Q 037288          363 ANIWPS----HTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTR--GAVQSYEGHV----NSHTRIQLGVDQ  431 (513)
Q Consensus       363 ~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~--~~~~~~~~h~----~~v~~~~~~~s~  431 (513)
                      +.+.+.    ........... +.++|++++++++.. ++.|.+||+.....  ..+.++..+.    .......+.++|
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~-~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRH-MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCce-EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            222210    11112233344 478899999988876 89999999962111  1333433221    111223478899


Q ss_pred             CCCEEEEEeC-CCcEEEEeCCCCe----EEEEecCCCCCeEEEEEcCCCce-EEeeC
Q 037288          432 SERFVMSGGE-DCKLRIWSIRSGE----LVFEDKFSNSVPSAVCWRTQRSM-GPQIE  482 (513)
Q Consensus       432 ~g~~l~sg~~-Dg~v~vwd~~~~~----~~~~~~~~~~~v~~v~~~p~~~~-~~t~~  482 (513)
                      +|++|+++.. ++.|.+|++....    .+..... ......++++|++.. +++..
T Consensus       238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEc
Confidence            9999998865 7899999986432    2232222 234568999999654 44443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.39  E-value=4.8e-11  Score=121.05  Aligned_cols=225  Identities=15%  Similarity=0.150  Sum_probs=147.4

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcE--E-----EEee
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMA--S-----WVCR  294 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~--~-----~~~~  294 (513)
                      +.+.+|++.++...            .....-...|.|+.|+| +..+++.|. +|+|.+||+..+..  .     ....
T Consensus       222 ~~~~vW~~~~p~~P------------e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s  289 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTP------------ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS  289 (555)
T ss_pred             ceEEEEecCCCCCc------------eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccccc
Confidence            36777888765222            11333447899999999 566777774 56699999987653  1     1223


Q ss_pred             eCCCeEEEEEecCC--cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288          295 SKSDILAQQVIHSG--NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF  372 (513)
Q Consensus       295 ~~~~V~~l~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~  372 (513)
                      |..+|+.+.|..+.  .-+++++.||.|..|+++.-........+..+..                        ......
T Consensus       290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~------------------------~~~~~~  345 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH------------------------KGQQSS  345 (555)
T ss_pred             CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc------------------------cccccc
Confidence            77889999998755  4499999999999998876543110000000000                        000111


Q ss_pred             cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc------eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA------VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~------~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                      ....++++.+...+.+.|++|+.+|.|.--+-.......      ...+..|.+.|+.  +.++|-+..++..+.|.+|+
T Consensus       346 ~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~--v~~nPF~~k~fls~gDW~vr  423 (555)
T KOG1587|consen  346 KAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA--VSRNPFYPKNFLSVGDWTVR  423 (555)
T ss_pred             cccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe--eecCCCccceeeeeccceeE
Confidence            223445555555677889999999998874322111112      3456677888877  88888665444444499999


Q ss_pred             EEeCC-CCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288          447 IWSIR-SGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       447 vwd~~-~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      ||+.. ...++..+..+...|++++|+|. ..+|++...+-.
T Consensus       424 iWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  424 IWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             eccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence            99988 77888888887778999999999 567777664433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=2.5e-11  Score=123.49  Aligned_cols=226  Identities=13%  Similarity=0.082  Sum_probs=153.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCC---cEEEEEeCCCeEEEEECCCCccccc
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSG---NVVLCGFRNGAIVTVDVRKRQRGCS  333 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~  333 (513)
                      .-..-.|++|+++++...+..|.||...|+.++..+. |..+++++.+.|..   .++++++.||.|++||...+....+
T Consensus        18 ~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt   97 (792)
T KOG1963|consen   18 NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT   97 (792)
T ss_pred             eecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence            3344578899999999999999999999999888776 78889999998855   4677999999999999987765331


Q ss_pred             cc-ccccc-------CcCeEEEeeCC----eEEE-eE-------------------------------------------
Q 037288          334 SR-AGRRH-------RIPYSRLQRND----RVTN-EQ-------------------------------------------  357 (513)
Q Consensus       334 ~~-~~~~h-------~~~v~~v~~~~----~~~s-~~-------------------------------------------  357 (513)
                      +. .+.-|       ........+..    .+++ .+                                           
T Consensus        98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen   98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI  177 (792)
T ss_pred             EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence            00 00001       00000000000    0000 00                                           


Q ss_pred             --------eecccCccc--ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC--CCccceEEecCCCCceeEE
Q 037288          358 --------WFELKANIW--PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL--TTRGAVQSYEGHVNSHTRI  425 (513)
Q Consensus       358 --------w~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~--~~~~~~~~~~~h~~~v~~~  425 (513)
                              |+.......  ....-.++.-...+..++|+++++|+|..||.|.+|.-..  ........+.-|.++|.+ 
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~-  256 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS-  256 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce-
Confidence                    333221100  0000011111133458999999999999999999996432  112266778899999988 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          426 QLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                       ++|+++|.+|++||..|.+-+|.+.+++ -+-+..-+++|..+.++|++..++..-.|..
T Consensus       257 -L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq  315 (792)
T KOG1963|consen  257 -LSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ  315 (792)
T ss_pred             -eEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence             8999999999999999999999999999 3345556889999999999766655555544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2.6e-10  Score=115.60  Aligned_cols=209  Identities=11%  Similarity=0.064  Sum_probs=138.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe----CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCC--eEEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT----NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG-FRNG--AIVTVD  324 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s----~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg--~i~iwd  324 (513)
                      +..+...+...+|+|||+.|+..+    +..+.+||+.+++...+......+.+++|+|||+.|+.. +.+|  .|++||
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            445667899999999999888653    234899999998766555555556788999999866644 4455  588999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC---eEEEeE--------ee--cccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WF--ELKANIWPSHTTFMPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  391 (513)
                      +.++..    ..+..+...+....|+|   .++..+        |.  ...+..   ..+...........++|+|++|+
T Consensus       274 ~~tg~~----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        274 LASGQI----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCCCE----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEeecCCCCccCEEECCCCCEEE
Confidence            987653    34444555677889998   344333        22  222221   12222222222357899999998


Q ss_pred             EEecC---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCeEEEEecCCCCC
Q 037288          392 ASSMD---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK---LRIWSIRSGELVFEDKFSNSV  465 (513)
Q Consensus       392 s~s~d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~---v~vwd~~~~~~~~~~~~~~~~  465 (513)
                      ..+.+   ..|.+||+.   .+....+.... ..  ....|+|||++|+.++.++.   +.++++ +|.....+..+.+.
T Consensus       347 ~~~~~~g~~~I~~~dl~---~g~~~~Lt~~~-~~--~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~  419 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLA---TGGVQVLTDTF-LD--ETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ  419 (429)
T ss_pred             EEEccCCCceEEEEECC---CCCeEEeCCCC-CC--CCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence            76653   358888985   33344443221 11  23679999999999888765   677777 45556667777778


Q ss_pred             eEEEEEcCC
Q 037288          466 PSAVCWRTQ  474 (513)
Q Consensus       466 v~~v~~~p~  474 (513)
                      +...+|+|-
T Consensus       420 ~~~p~Wsp~  428 (429)
T PRK03629        420 VKFPAWSPY  428 (429)
T ss_pred             cCCcccCCC
Confidence            889999984

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=3.5e-11  Score=111.06  Aligned_cols=158  Identities=10%  Similarity=0.134  Sum_probs=126.4

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee----eCCCeEEEEEecCCcEEEEE--eCCCeEEEEECCCCc
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR----SKSDILAQQVIHSGNVVLCG--FRNGAIVTVDVRKRQ  329 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~~~~~~l~sg--~~dg~i~iwd~~~~~  329 (513)
                      ...|.++.++  -+.|+++-.+.|.|||+.+.+.+.++.    +...+.++++++.+.+++--  ...|.|.+||..+-+
T Consensus        87 pt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   87 PTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            4578888874  457777777779999999999887776    33447777777777677643  236999999999887


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe-EEEEecCCCC
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT-VKLYDHRLTT  408 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-i~lwd~~~~~  408 (513)
                      ..   ..+.+|.+++.++                                  +|+++|.+|||++..|+ ||++.+.  +
T Consensus       165 ~v---~~I~aH~~~lAal----------------------------------afs~~G~llATASeKGTVIRVf~v~--~  205 (391)
T KOG2110|consen  165 PV---NTINAHKGPLAAL----------------------------------AFSPDGTLLATASEKGTVIRVFSVP--E  205 (391)
T ss_pred             ee---eEEEecCCceeEE----------------------------------EECCCCCEEEEeccCceEEEEEEcC--C
Confidence            64   4777888888885                                  45669999999999888 6899996  5


Q ss_pred             ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      ...+..|+.....+...+++|+|++.+|++.|..++|+||.+....
T Consensus       206 G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  206 GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            5588888877768888889999999999999999999999987543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=8.2e-11  Score=105.28  Aligned_cols=152  Identities=13%  Similarity=0.243  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCEEEEEeC-----------CeEEEEEC--CCCcEEEEe--eeCCCeEEEEEecCCcEEEE--EeCCCeEEE
Q 037288          260 WTADFCTNPSQAVIGTN-----------LGAAMVDM--ETGMASWVC--RSKSDILAQQVIHSGNVVLC--GFRNGAIVT  322 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~s~-----------~~i~vwd~--~~~~~~~~~--~~~~~V~~l~~~~~~~~l~s--g~~dg~i~i  322 (513)
                      ..+.|+++|.+|+.-.+           +...+|-+  ... ....+  ...++|.+++|+|+|+.|++  |..+..|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            46889999987774322           12334444  332 22333  34556999999999987544  456789999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeE
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTV  399 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i  399 (513)
                      ||++...    +..+.  ...+                                 .. +.|+|+|++|++++.+   |.|
T Consensus        88 yd~~~~~----i~~~~--~~~~---------------------------------n~-i~wsP~G~~l~~~g~~n~~G~l  127 (194)
T PF08662_consen   88 YDVKGKK----IFSFG--TQPR---------------------------------NT-ISWSPDGRFLVLAGFGNLNGDL  127 (194)
T ss_pred             EcCcccE----eEeec--CCCc---------------------------------eE-EEECCCCCEEEEEEccCCCcEE
Confidence            9997222    11111  1222                                 22 4788899999998754   679


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEe
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE------DCKLRIWSIRSGELVFED  459 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~------Dg~v~vwd~~~~~~~~~~  459 (513)
                      .+||.+  +...+.+++ |.. +  ..++|+|+|++|+++..      |+.++||+. +|+++...
T Consensus       128 ~~wd~~--~~~~i~~~~-~~~-~--t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  128 EFWDVR--KKKKISTFE-HSD-A--TDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EEEECC--CCEEeeccc-cCc-E--EEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            999997  555666655 433 3  34899999999998864      788999998 56666654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=1e-11  Score=116.48  Aligned_cols=165  Identities=17%  Similarity=0.156  Sum_probs=116.9

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee---eCCCeEEEEEecCC-----cEEEEEeCCCeEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR---SKSDILAQQVIHSG-----NVVLCGFRNGAIVTV  323 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~-----~~l~sg~~dg~i~iw  323 (513)
                      ...|...|.+++|+|||++|++-+.+..+||+++++..+....   .+.....+.|+.|+     .+++....-+.|..|
T Consensus       182 e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~  261 (398)
T KOG0771|consen  182 EIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC  261 (398)
T ss_pred             hHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence            4567789999999999999997766699999999996544333   22336778888777     334444455777777


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD  403 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd  403 (513)
                      |+...+... +                              +.....+.....+.++ ..+.+|++++.|+.||.|-|++
T Consensus       262 ~~~~w~~~~-~------------------------------l~~~~~~~~~~siSsl-~VS~dGkf~AlGT~dGsVai~~  309 (398)
T KOG0771|consen  262 DISLWSGSN-F------------------------------LRLRKKIKRFKSISSL-AVSDDGKFLALGTMDGSVAIYD  309 (398)
T ss_pred             Eeeeecccc-c------------------------------cchhhhhhccCcceeE-EEcCCCcEEEEeccCCcEEEEE
Confidence            775443311 0                              0011122223345554 7788999999999999999999


Q ss_pred             cCCCCccceE-EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          404 HRLTTRGAVQ-SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       404 ~~~~~~~~~~-~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      ..  +-+.++ .-+.|...|+.  +.|+||.+++++.+.|....|..+.-
T Consensus       310 ~~--~lq~~~~vk~aH~~~VT~--ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  310 AK--SLQRLQYVKEAHLGFVTG--LTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ec--eeeeeEeehhhheeeeee--EEEcCCcCcccccccCCceeEEEEee
Confidence            86  333333 23578888877  99999999999999999888887654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=7.5e-11  Score=114.53  Aligned_cols=192  Identities=14%  Similarity=0.165  Sum_probs=135.2

Q ss_pred             EEEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          260 WTADFCT-NPSQAVIGTNLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       260 ~~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      .+++++. +-.+++.|+...|.=++++.|+-+.-+... +.+++|..++-..+|++|+.||.|..||.|......   .+
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~---~l  213 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG---TL  213 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe---ee
Confidence            3455543 445666667677888999999877777755 669999999999999999999999999999876533   22


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE  416 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~  416 (513)
                      ..... |.+                      .... ....|++ ..|+.+|-.+++|+.+|.|.|||+|  ...++. ..
T Consensus       214 ~~~~~-v~s----------------------~pg~~~~~svTa-l~F~d~gL~~aVGts~G~v~iyDLR--a~~pl~-~k  266 (703)
T KOG2321|consen  214 DAASS-VNS----------------------HPGGDAAPSVTA-LKFRDDGLHVAVGTSTGSVLIYDLR--ASKPLL-VK  266 (703)
T ss_pred             ecccc-cCC----------------------CccccccCcceE-EEecCCceeEEeeccCCcEEEEEcc--cCCcee-ec
Confidence            21111 111                      0000 0112444 3677779999999999999999999  555554 34


Q ss_pred             CCCCceeEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC-ceEEeeCC
Q 037288          417 GHVNSHTRIQLGVDQS--ERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR-SMGPQIEG  483 (513)
Q Consensus       417 ~h~~~v~~~~~~~s~~--g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~~t~~~  483 (513)
                      .|...+....+.|.+.  ++.|++ .....++|||-.+|+....+.. ...++.+|+-|+. .+|...+.
T Consensus       267 dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~  334 (703)
T KOG2321|consen  267 DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANES  334 (703)
T ss_pred             ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCC
Confidence            5877777777888665  344554 3457899999999999888765 4559999999994 44444443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=117.87  Aligned_cols=189  Identities=12%  Similarity=0.128  Sum_probs=132.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCeEEEE-ECCCC---------------------------------------c-----
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTNLGAAMV-DMETG---------------------------------------M-----  288 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~~~i~vw-d~~~~---------------------------------------~-----  288 (513)
                      .|...|.|+.|+.+...+.++.|..+.+| |+.+.                                       +     
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            45567778888888777777777776555 33221                                       0     


Q ss_pred             ----EEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccC
Q 037288          289 ----ASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKA  363 (513)
Q Consensus       289 ----~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~  363 (513)
                          .... -.|.+.+.|-.|+|||.-|++++.||.|++|.-...-.    .++.....+|.|++|              
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----Stl~Q~~~~v~c~~W--------------  153 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----STVVQNEESIRCARW--------------  153 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----HHHhhcCceeEEEEE--------------
Confidence                0000 01556788999999999999999999999997543311    133444556666544              


Q ss_pred             cccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC
Q 037288          364 NIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC  443 (513)
Q Consensus       364 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg  443 (513)
                                          .|+.+-++.+.. +.+.|=.+.  ....+..+++|.+-|.+  ++|++..+++++||+|.
T Consensus       154 --------------------~p~S~~vl~c~g-~h~~IKpL~--~n~k~i~WkAHDGiiL~--~~W~~~s~lI~sgGED~  208 (737)
T KOG1524|consen  154 --------------------APNSNSIVFCQG-GHISIKPLA--ANSKIIRWRAHDGLVLS--LSWSTQSNIIASGGEDF  208 (737)
T ss_pred             --------------------CCCCCceEEecC-CeEEEeecc--cccceeEEeccCcEEEE--eecCccccceeecCCce
Confidence                                445555554433 455555554  23356678899998755  99999999999999999


Q ss_pred             cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..+|||- .|..++.-..|+.+|++++|+|+..+++.+-....
T Consensus       209 kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R  250 (737)
T KOG1524|consen  209 RFKIWDA-QGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR  250 (737)
T ss_pred             eEEeecc-cCcccccCChhccceeeeeeccccceeeeeeeeee
Confidence            9999994 67778888889999999999999666665544433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.33  E-value=6.2e-09  Score=102.27  Aligned_cols=191  Identities=9%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             cEEEEEEcCCCCEEEEEe--CCeEEEEECCC-Cc---EEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCcc
Q 037288          258 TVWTADFCTNPSQAVIGT--NLGAAMVDMET-GM---ASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQR  330 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~-~~---~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~  330 (513)
                      ....++++|++++++++.  ++.|.+|++.+ +.   .+....+.....+++++|++++++++ ..++.|.+||+.....
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            456899999999888764  56699999974 32   23333344457888999999877555 4579999999976332


Q ss_pred             ccc----cccccccCcCeEEEeeCC---eEEEeE--------eeccc--CcccceeEee-cCC-----CceEEEEEcCCC
Q 037288          331 GCS----SRAGRRHRIPYSRLQRND---RVTNEQ--------WFELK--ANIWPSHTTF-MPS-----SISCLQSLQLYD  387 (513)
Q Consensus       331 ~~~----~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~--~~~~~~~~~~-~~~-----~v~~~~~~~~~~  387 (513)
                      ...    ...... ......+.|+|   .+++..        |+...  +.+.....+. .+.     ....-..++|++
T Consensus       161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            110    001111 23356788888   333332        66653  2322222221 111     111124678999


Q ss_pred             CEEEEEec-CCeEEEEecCCCCccceEEecCCCCc-eeEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 037288          388 QYFLASSM-DGTVKLYDHRLTTRGAVQSYEGHVNS-HTRIQLGVDQSERFVMSGGE-DCKLRIWSIR  451 (513)
Q Consensus       388 ~~l~s~s~-dg~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~  451 (513)
                      ++++++.. ++.|.+|++.  ......++.++... .....+.++|+|++|++++. +++|.+|++.
T Consensus       240 ~~lyv~~~~~~~I~v~~i~--~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVS--EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEe--CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            99998864 7899999986  33222222222110 01123789999999998776 8999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.33  E-value=1.3e-09  Score=109.66  Aligned_cols=223  Identities=17%  Similarity=0.236  Sum_probs=164.4

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc-EEEEeee-CC-CeEEEEE-ecCCc-EEEEEeC-CCeEEEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM-ASWVCRS-KS-DILAQQV-IHSGN-VVLCGFR-NGAIVTV  323 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~-~~~~~~~-~~-~V~~l~~-~~~~~-~l~sg~~-dg~i~iw  323 (513)
                      ....|...+.++.+.+.+..++.++ ++.+.+|+...+. ....+.. .. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            3678999999999999999888775 6779999999886 4444443 32 6777777 77776 5555444 9999999


Q ss_pred             ECCC-CccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEee-cCCCceEEEEEcCCCC-E
Q 037288          324 DVRK-RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQ-Y  389 (513)
Q Consensus       324 d~~~-~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~  389 (513)
                      |+.. ...   ...+..|...|..+.|++   .++.+.        |+...+.  ....+. +...+.++ .++|++. .
T Consensus       140 ~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~~~~~~  213 (466)
T COG2319         140 DLSTPGKL---IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSL-AFSPDGGLL  213 (466)
T ss_pred             EecCCCeE---EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEE-EEcCCcceE
Confidence            9987 333   457899999999999999   233332        6665522  223333 34455665 5668887 5


Q ss_pred             EEEEecCCeEEEEecCCCCccceE-EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEecCCCCCeE
Q 037288          390 FLASSMDGTVKLYDHRLTTRGAVQ-SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL-VFEDKFSNSVPS  467 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~~~~-~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~-~~~~~~~~~~v~  467 (513)
                      +++++.|+.|++||..  ....+. .+.+|.... .  ..|++++.++++++.|+.+++|++..... +..+..|...+.
T Consensus       214 ~~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~  288 (466)
T COG2319         214 IASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSV-V--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL  288 (466)
T ss_pred             EEEecCCCcEEEEECC--CCcEEeeecCCCCcce-e--EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence            5555899999999886  344555 688888775 4  37899998999999999999999987664 444556788899


Q ss_pred             EEEEcCCCceEEeeCCC
Q 037288          468 AVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       468 ~v~~~p~~~~~~t~~~~  484 (513)
                      ++.|.|+...+++.+.+
T Consensus       289 ~~~~~~~~~~~~~~~~d  305 (466)
T COG2319         289 SVAFSPDGKLLASGSSD  305 (466)
T ss_pred             EEEECCCCCEEEEeeCC
Confidence            99999976666655555

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.4e-10  Score=115.96  Aligned_cols=183  Identities=11%  Similarity=0.030  Sum_probs=119.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCCeEEEEECC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNGAIVTVDVR  326 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg~i~iwd~~  326 (513)
                      +..+...+.+.+|+|||+.|+..++    ..|.+||+.+++...+......+.+.+|+|||+.|+ +.+.+|...+|.++
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            4567788999999999999887653    238999999998766555556678899999997665 56778876666543


Q ss_pred             --CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEe
Q 037288          327 --KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYD  403 (513)
Q Consensus       327 --~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd  403 (513)
                        .+.    ...+..+......                                  ..|+|+|+.|+..+. +|...+|.
T Consensus       271 ~~~~~----~~~lt~~~~~~~~----------------------------------~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        271 ADGSG----LRRLTQSSGIDTE----------------------------------PFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             CCCCC----cEECCCCCCCCcC----------------------------------eEEcCCCCEEEEEecCCCCcEEEE
Confidence              332    1122222211111                                  357889998886654 56777776


Q ss_pred             cCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          404 HRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       404 ~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      +.... +....+..+....  ....|+|||++|+..+.++   .|.+||+.+++... +.. ........|+|++.+
T Consensus       313 ~~~~~-g~~~~lt~~g~~~--~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~  384 (427)
T PRK02889        313 MPASG-GAAQRVTFTGSYN--TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRY  384 (427)
T ss_pred             EECCC-CceEEEecCCCCc--CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCE
Confidence            64212 2222222121212  2368999999998777654   69999999887543 332 233467899999643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.32  E-value=2.2e-12  Score=121.99  Aligned_cols=188  Identities=14%  Similarity=0.157  Sum_probs=151.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      ...|.++.|-.+.+++|++...-+.|||-. |..+..+.....|..+.|-|..-+|++++..|.++--|+..++.+.   
T Consensus       170 ~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---  245 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---  245 (545)
T ss_pred             hhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhH---
Confidence            368999999999999999988889999975 6777778888899999999999999999999999999999998644   


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY  415 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~  415 (513)
                      .+..-.+.+..                                  +.-.|-.-.+-+|...|+|.+|...  ...++..+
T Consensus       246 ~~~t~~G~~~v----------------------------------m~qNP~NaVih~GhsnGtVSlWSP~--skePLvKi  289 (545)
T KOG1272|consen  246 SIRTGAGRTDV----------------------------------MKQNPYNAVIHLGHSNGTVSLWSPN--SKEPLVKI  289 (545)
T ss_pred             HHHccCCccch----------------------------------hhcCCccceEEEcCCCceEEecCCC--CcchHHHH
Confidence            33322222222                                  2344556677789999999999986  55577778


Q ss_pred             cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..|.++|..  ++++++|+|+++.|.|..++|||++.-..+.++.. .-+...+++|..+.+.++-+.-+.
T Consensus       290 LcH~g~V~s--iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~  357 (545)
T KOG1272|consen  290 LCHRGPVSS--IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQ  357 (545)
T ss_pred             HhcCCCcce--EEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeee
Confidence            889999988  89999999999999999999999999887777655 455778888877666655554433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=4.3e-10  Score=114.59  Aligned_cols=185  Identities=11%  Similarity=0.033  Sum_probs=124.3

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEE-EEEeCCCe--EEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVV-LCGFRNGA--IVT  322 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l-~sg~~dg~--i~i  322 (513)
                      ..+..|...+...+|+|||+.|+..+.    ..|.+||+.+++...+......+.+.+|+|||+.| ++.+.++.  |++
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  274 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT  274 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence            346677889999999999998886642    34999999999876665666778899999999765 45566655  777


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eE
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TV  399 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i  399 (513)
                      ||+.++..    ..+..+......                                  ..|+|+|+.|+..+. +|  .|
T Consensus       275 ~d~~~~~~----~~Lt~~~~~~~~----------------------------------~~~spDG~~i~f~s~~~g~~~I  316 (435)
T PRK05137        275 MDLRSGTT----TRLTDSPAIDTS----------------------------------PSYSPDGSQIVFESDRSGSPQL  316 (435)
T ss_pred             EECCCCce----EEccCCCCccCc----------------------------------eeEcCCCCEEEEEECCCCCCeE
Confidence            78876653    223322221111                                  367889998887764 33  57


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      .++|+.   .+....+..+...+..  ..|+|+|++|+..+.+   ..|.+||+.++.. ..+.. ...+....|+|++.
T Consensus       317 y~~d~~---g~~~~~lt~~~~~~~~--~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~  389 (435)
T PRK05137        317 YVMNAD---GSNPRRISFGGGRYST--PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR  389 (435)
T ss_pred             EEEECC---CCCeEEeecCCCcccC--eEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC
Confidence            777864   3334444433333333  6799999999876653   3688899866543 33332 23467889999965


Q ss_pred             eEE
Q 037288          477 MGP  479 (513)
Q Consensus       477 ~~~  479 (513)
                      +++
T Consensus       390 ~i~  392 (435)
T PRK05137        390 VIM  392 (435)
T ss_pred             EEE
Confidence            433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.29  E-value=1.5e-10  Score=111.50  Aligned_cols=212  Identities=13%  Similarity=0.081  Sum_probs=147.9

Q ss_pred             CCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEe
Q 037288          116 TPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKL  195 (513)
Q Consensus       116 ~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~  195 (513)
                      +..|....|.++..+.||.+.|.+....-+.                 .-.++...+.+.-|+|+++-+..         
T Consensus        68 s~~~g~~~d~~~i~s~DGkf~il~k~~rVE~-----------------sv~AH~~A~~~gRW~~dGtgLlt---------  121 (737)
T KOG1524|consen   68 SSGGGKGSDTLLICSNDGRFVILNKSARVER-----------------SISAHAAAISSGRWSPDGAGLLT---------  121 (737)
T ss_pred             ccCCCCCcceEEEEcCCceEEEecccchhhh-----------------hhhhhhhhhhhcccCCCCceeee---------
Confidence            3344456788999999999998876333211                 12233344778889888544332         


Q ss_pred             cCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe
Q 037288          196 FGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT  275 (513)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s  275 (513)
                                              ...+|.+.+|+-.....             .++.....+|+|++|.|+..-++.+.
T Consensus       122 ------------------------~GEDG~iKiWSrsGMLR-------------Stl~Q~~~~v~c~~W~p~S~~vl~c~  164 (737)
T KOG1524|consen  122 ------------------------AGEDGVIKIWSRSGMLR-------------STVVQNEESIRCARWAPNSNSIVFCQ  164 (737)
T ss_pred             ------------------------ecCCceEEEEeccchHH-------------HHHhhcCceeEEEEECCCCCceEEec
Confidence                                    23577777776542110             11334557999999999999888887


Q ss_pred             CCeEEEEECCCCc-EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--e
Q 037288          276 NLGAAMVDMETGM-ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--R  352 (513)
Q Consensus       276 ~~~i~vwd~~~~~-~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~  352 (513)
                      .+.+.|=.+.-.. .++-..|.+-|.+++|++..+++++|+.|-..++||-....    +-+-..|..+|++++|+|  .
T Consensus       165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~ey~ITSva~npd~~  240 (737)
T KOG1524|consen  165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEEYAITSVAFNPEKD  240 (737)
T ss_pred             CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChhccceeeeeeccccc
Confidence            7777665555443 34444588889999999999999999999999999986443    457788999999999999  6


Q ss_pred             EEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288          353 VTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL  401 (513)
Q Consensus       353 ~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l  401 (513)
                      ++.+++....-      .-...+++..+ .|++||..++.|+..|.+.+
T Consensus       241 ~~v~S~nt~R~------~~p~~GSifnl-sWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  241 YLLWSYNTARF------SSPRVGSIFNL-SWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeeeeee------cCCCccceEEE-EEcCCCceeeccccCceEEE
Confidence            66776553220      01112345554 78999999999999888754

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=7.9e-10  Score=101.89  Aligned_cols=189  Identities=9%  Similarity=0.040  Sum_probs=117.5

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      -.+| ..|..+.|++||..+++++  +..|.|||..++..+.+. ...+.+.-+.|+|||.+|++++-|+..++|.....
T Consensus       192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~  270 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS  270 (445)
T ss_pred             CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence            4456 7999999999999999885  445999999999877766 35667999999999999999999999999965443


Q ss_pred             ccccccccccccCcCeEEEeeCC----eEEEe---------EeecccCccc------ceeE--------eec-----CCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND----RVTNE---------QWFELKANIW------PSHT--------TFM-----PSS  376 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~----~~~s~---------~w~~~~~~~~------~~~~--------~~~-----~~~  376 (513)
                      -...   ...--.+.|..-.|+|    .+++.         +++...+...      ....        +..     .+.
T Consensus       271 wt~e---rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge  347 (445)
T KOG2139|consen  271 WTKE---RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE  347 (445)
T ss_pred             ceec---ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence            2211   2222344788888888    22222         2333322221      0000        000     223


Q ss_pred             ceEEEEEcCCCCEEEEEecCCe--------EEEEecCCCCccceE-EecCC---CCceeEEEEEEcC---CCCEEEEEeC
Q 037288          377 ISCLQSLQLYDQYFLASSMDGT--------VKLYDHRLTTRGAVQ-SYEGH---VNSHTRIQLGVDQ---SERFVMSGGE  441 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s~dg~--------i~lwd~~~~~~~~~~-~~~~h---~~~v~~~~~~~s~---~g~~l~sg~~  441 (513)
                      +.++ ++.|.|.+||+.-..+.        |.+||.+  ...++. .+-|-   ..+ ..  ++|+|   ++.+|..+=.
T Consensus       348 aq~l-awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr--~sp~vels~cg~i~ge~P-~~--IsF~pl~n~g~lLsiaWs  421 (445)
T KOG2139|consen  348 AQCL-AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR--KSPPVELSYCGMIGGEYP-AY--ISFGPLKNEGRLLSIAWS  421 (445)
T ss_pred             ccee-eECCCCCEEEEEEcCCchhhhhhhhhhhhccc--ccCceEEEecccccCCCC-ce--EEeeecccCCcEEEEEec
Confidence            4444 78999999998765444        6677876  332221 11111   111 12  34443   4555555555


Q ss_pred             CCcEEEEeC
Q 037288          442 DCKLRIWSI  450 (513)
Q Consensus       442 Dg~v~vwd~  450 (513)
                      -|.+.-|++
T Consensus       422 TGriq~ypl  430 (445)
T KOG2139|consen  422 TGRIQRYPL  430 (445)
T ss_pred             cCceEeeee
Confidence            666666654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.29  E-value=8.2e-12  Score=118.20  Aligned_cols=181  Identities=17%  Similarity=0.170  Sum_probs=133.6

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      +.+..| ..|..+.|-|.--+|+++++.+ ++--|+.+|+.+..+. ..+.+..+.-+|-..++-.|..+|+|.+|....
T Consensus       204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            334433 5789999999988999888766 7888999999877766 455688888899999999999999999999988


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .++   +..+..|.++|.+|+                                  +.++|+|++|++.|..|+|||+|  
T Consensus       283 keP---LvKiLcH~g~V~siA----------------------------------v~~~G~YMaTtG~Dr~~kIWDlR--  323 (545)
T KOG1272|consen  283 KEP---LVKILCHRGPVSSIA----------------------------------VDRGGRYMATTGLDRKVKIWDLR--  323 (545)
T ss_pred             cch---HHHHHhcCCCcceEE----------------------------------ECCCCcEEeecccccceeEeeec--
Confidence            876   458889999998854                                  55699999999999999999999  


Q ss_pred             CccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCC--eEEEEecCC--CCCeEEEEEcCCCc
Q 037288          408 TRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS-IRSG--ELVFEDKFS--NSVPSAVCWRTQRS  476 (513)
Q Consensus       408 ~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd-~~~~--~~~~~~~~~--~~~v~~v~~~p~~~  476 (513)
                      ....+.++.. |..    -.+++|..|  +++.+....|.||. ...+  ..-.-+..|  .++|..+.|.|-..
T Consensus       324 ~~~ql~t~~tp~~a----~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  324 NFYQLHTYRTPHPA----SNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             cccccceeecCCCc----ccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence            4334444433 322    226677555  55566677899994 3221  211112222  45899999999743

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=6.5e-10  Score=113.13  Aligned_cols=183  Identities=12%  Similarity=0.066  Sum_probs=120.4

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCC--eEEEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNG--AIVTV  323 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg--~i~iw  323 (513)
                      .+..|...+.+.+|+|||+.|+..+.    ..|.+||+.+++...+....+...+.+|+|||+.|+ +.+.+|  .|++|
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~  277 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM  277 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence            35567778999999999999887652    248999999888766555555567889999997654 555555  59999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCe--EE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGT--VK  400 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~--i~  400 (513)
                      |+.+++..    .+..+......                                  ..|+|+|+.|+.++. +|.  |.
T Consensus       278 d~~~g~~~----~lt~~~~~~~~----------------------------------~~~spDG~~l~f~sd~~g~~~iy  319 (433)
T PRK04922        278 DLGSRQLT----RLTNHFGIDTE----------------------------------PTWAPDGKSIYFTSDRGGRPQIY  319 (433)
T ss_pred             ECCCCCeE----ECccCCCCccc----------------------------------eEECCCCCEEEEEECCCCCceEE
Confidence            99876532    22222211111                                  367889998887764 455  55


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      ++|+.   .+....+..+.....  ..+|+|||++|+..+.++   .|.+||+.+++.. .+.. ........|+|++.+
T Consensus       320 ~~dl~---~g~~~~lt~~g~~~~--~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~  392 (433)
T PRK04922        320 RVAAS---GGSAERLTFQGNYNA--RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSM  392 (433)
T ss_pred             EEECC---CCCeEEeecCCCCcc--CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCE
Confidence            55653   222333322222222  378999999998765443   6999999888765 3332 234557799999654


Q ss_pred             E
Q 037288          478 G  478 (513)
Q Consensus       478 ~  478 (513)
                      +
T Consensus       393 i  393 (433)
T PRK04922        393 V  393 (433)
T ss_pred             E
Confidence            3

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.5e-09  Score=109.17  Aligned_cols=224  Identities=9%  Similarity=0.035  Sum_probs=164.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEE-----eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC-Ccccc
Q 037288          259 VWTADFCTNPSQAVIGTNLGAAMVDMETGMASWV-----CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK-RQRGC  332 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~-----~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~  332 (513)
                      -.++.+++.|.+.+..-+..+.+|+..++.....     ..|.-.+++.+++|.++++++|..||.|.+|.--. .....
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~  242 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE  242 (792)
T ss_pred             CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence            4578888999999989899999999887551111     12555689999999999999999999999996433 22222


Q ss_pred             ccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288          333 SSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY  402 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw  402 (513)
                      +...+.-|..+|.++.|++   .+++|+       |...+++  +....++.+.+..+ .++|++.+.+....|+.|.+.
T Consensus       243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i-~vS~ds~~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHI-VVSPDSDLYSLVLEDNQIHLI  319 (792)
T ss_pred             cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEE-EEcCCCCeEEEEecCceEEEE
Confidence            2567889999999999998   888888       8887776  34455667777776 667999999999999999999


Q ss_pred             ecCCCCcc-ceEEecCC--------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----CCC-----
Q 037288          403 DHRLTTRG-AVQSYEGH--------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK-----FSN-----  463 (513)
Q Consensus       403 d~~~~~~~-~~~~~~~h--------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~-----~~~-----  463 (513)
                      ......-. .+..+..-        .+-.+.  ++++|.-+.++-.+..|.|.+||+.+.+.+..+.     .++     
T Consensus       320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~--~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~  397 (792)
T KOG1963|consen  320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTG--VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI  397 (792)
T ss_pred             eccchhhhhhccCccCCCcccccccccccee--EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence            87421111 22222211        222333  7788877778888899999999999888776642     122     


Q ss_pred             -CCeEEEEEcCCCceEEeeCCCeee
Q 037288          464 -SVPSAVCWRTQRSMGPQIEGKIHE  487 (513)
Q Consensus       464 -~~v~~v~~~p~~~~~~t~~~~~~~  487 (513)
                       -.+++++.+-.+.+++|.+-.+.+
T Consensus       398 ~v~itav~~~~~gs~maT~E~~~d~  422 (792)
T KOG1963|consen  398 QVGITAVARSRFGSWMATLEARIDK  422 (792)
T ss_pred             EEeeeeehhhccceEEEEeeeeehh
Confidence             246777888788899998877653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=8.2e-10  Score=102.54  Aligned_cols=194  Identities=13%  Similarity=0.149  Sum_probs=136.5

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCC---CeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKS---DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~---~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      .|...|.|++|....+++.+|.. ++|.+-|+++.+.+....|..   .|..+..+|..+.|++.+.++.|.+||++...
T Consensus       103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            46689999999998899998865 569999999999988888665   89999999999999999999999999999876


Q ss_pred             cccccccccccCcCeEEEeeCC----eEEEeE-------eecccCccc----------c---------------------
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIW----------P---------------------  367 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~----------~---------------------  367 (513)
                      ....+..+.........+.|+|    .+++.+       |+.+..+..          +                     
T Consensus       183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            3221223334456677888888    344333       655432100          0                     


Q ss_pred             -----------------eeEeecCC-C------ceEEEEEcCCCCEEEEEecCCeEEEEecCCCC---------------
Q 037288          368 -----------------SHTTFMPS-S------ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT---------------  408 (513)
Q Consensus       368 -----------------~~~~~~~~-~------v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~---------------  408 (513)
                                       ...+.|.. .      +.+ ++|- +..-+++|+.+-.|++|.+....               
T Consensus       263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS-~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~  340 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKS-MTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM  340 (609)
T ss_pred             hccCCCEEeeeecccceeEeccCCCCcceeeeeeee-eeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhC
Confidence                             00000100 0      111 1222 33458899999999999874210               


Q ss_pred             ------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          409 ------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       409 ------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                            .+.+..++||..-+..  +.|+|...+|++.|-...++||+-.
T Consensus       341 ~~~~~i~~~~~VLrGHRSv~NQ--VRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  341 PSEIFIEKELTVLRGHRSVPNQ--VRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             chhheecceeEEEecccccccc--eeecCCcceEeccchhhheeccccc
Confidence                  1134567889887766  8899999999999999999999753

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.27  E-value=6.3e-09  Score=94.59  Aligned_cols=162  Identities=14%  Similarity=0.211  Sum_probs=117.1

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCC-CcEEEEee---eCCCeEEEEEecCCcEEEE-EeCCCeEEEEECCC
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMET-GMASWVCR---SKSDILAQQVIHSGNVVLC-GFRNGAIVTVDVRK  327 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~-~~~~~~~~---~~~~V~~l~~~~~~~~l~s-g~~dg~i~iwd~~~  327 (513)
                      .....+|.++.+.++  .+++.-.+.|.||...+ .+.+..+.   .+..+.++.-+.+..+|+. |-.-|.|+|-|+..
T Consensus        91 l~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   91 LSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             EEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence            345678999988654  78888889999999874 34444444   2334444443333344443 45579999999987


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe-EEEEecCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT-VKLYDHRL  406 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-i~lwd~~~  406 (513)
                      .+..+ -..+.+|...|.+                                  +.+..+|..+||+|..|+ |+|||.. 
T Consensus       169 ~~~~~-p~~I~AH~s~Iac----------------------------------v~Ln~~Gt~vATaStkGTLIRIFdt~-  212 (346)
T KOG2111|consen  169 TKPNA-PSIINAHDSDIAC----------------------------------VALNLQGTLVATASTKGTLIRIFDTE-  212 (346)
T ss_pred             cCcCC-ceEEEcccCceeE----------------------------------EEEcCCccEEEEeccCcEEEEEEEcC-
Confidence            76532 2355666666666                                  356679999999999988 7899997 


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG  453 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~  453 (513)
                       +...++.+......-...+++|||+..+|+++|..|+|+||.++..
T Consensus       213 -~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  213 -DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence             5668888875555445566999999999999999999999998763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=7.4e-10  Score=102.09  Aligned_cols=187  Identities=11%  Similarity=0.048  Sum_probs=124.5

Q ss_pred             cCcEEEEEEcCC-CCEEEEEeCCeEEEEECCCC----c--------EEEEee--eCCCeEEEEEecCCcEEEEEeC-CCe
Q 037288          256 KCTVWTADFCTN-PSQAVIGTNLGAAMVDMETG----M--------ASWVCR--SKSDILAQQVIHSGNVVLCGFR-NGA  319 (513)
Q Consensus       256 ~~~V~~~~~s~~-g~~l~s~s~~~i~vwd~~~~----~--------~~~~~~--~~~~V~~l~~~~~~~~l~sg~~-dg~  319 (513)
                      +..|.|++|-|. +..|+.|...+|.+|.....    +        ...+++  .+..|++++|++||..+++++. |..
T Consensus       140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsss  219 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSS  219 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcce
Confidence            468999999994 55888999999999976432    1        111222  3456999999999998888875 689


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      |.|||..++..++ +.                                    ....+-.++..|+|++.+|..++-|+..
T Consensus       220 i~iWdpdtg~~~p-L~------------------------------------~~glgg~slLkwSPdgd~lfaAt~davf  262 (445)
T KOG2139|consen  220 IMIWDPDTGQKIP-LI------------------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVF  262 (445)
T ss_pred             EEEEcCCCCCccc-cc------------------------------------ccCCCceeeEEEcCCCCEEEEeccccee
Confidence            9999999988655 11                                    1112233446889999999999999999


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---------------EEEEec----
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE---------------LVFEDK----  460 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~---------------~~~~~~----  460 (513)
                      ++|.... ......-.. ..+.|..  .+|+|+|++|+-++. |.-++|++....               ++..+.    
T Consensus       263 rlw~e~q-~wt~erw~l-gsgrvqt--acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti  337 (445)
T KOG2139|consen  263 RLWQENQ-SWTKERWIL-GSGRVQT--ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI  337 (445)
T ss_pred             eeehhcc-cceecceec-cCCceee--eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence            9997541 111222222 2335554  899999998766553 334455543211               111111    


Q ss_pred             -C----CCCCeEEEEEcCCCceEEeeCCC
Q 037288          461 -F----SNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       461 -~----~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       .    -.+.+.+++|.|.+.++|..-..
T Consensus       338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             hcCcccccCccceeeECCCCCEEEEEEcC
Confidence             1    14678999999998777765433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.25  E-value=3.4e-09  Score=96.55  Aligned_cols=201  Identities=8%  Similarity=-0.023  Sum_probs=118.3

Q ss_pred             EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCc----------------
Q 037288          279 AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI----------------  342 (513)
Q Consensus       279 i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~----------------  342 (513)
                      +.+||..-.-.+..+...-.+..++|+|.+++|++|+.|+.+++.+--+-+....+..+..-.+                
T Consensus       193 laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql  272 (447)
T KOG4497|consen  193 LAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL  272 (447)
T ss_pred             EEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence            3445543222333444456789999999999999999999999876544432211111111111                


Q ss_pred             CeEEEeeCC-eEEEeEeecccC------------cccceeEeecCCCceEEEEEcCCCCEEEEEec--CCeEEEEecCCC
Q 037288          343 PYSRLQRND-RVTNEQWFELKA------------NIWPSHTTFMPSSISCLQSLQLYDQYFLASSM--DGTVKLYDHRLT  407 (513)
Q Consensus       343 ~v~~v~~~~-~~~s~~w~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~--dg~i~lwd~~~~  407 (513)
                      ...++.|.| .+-.+-|...+.            .++|......+.....+.+|++|..++++-..  -+.+-+||++  
T Consensus       273 ~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq--  350 (447)
T KOG4497|consen  273 LHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ--  350 (447)
T ss_pred             cccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech--
Confidence            123444544 222222332211            11111112223334556789999999998654  3678899997  


Q ss_pred             CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          408 TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       408 ~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ..+.-..+ ....+|..  +.|+|....|+.+.....+++|.......+.... .+-.|..++|+-.+..++-.+.|-
T Consensus       351 ~l~l~avL-iQk~pira--f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  351 NLKLHAVL-IQKHPIRA--FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             hhhhhhhh-hhccceeE--EEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCc
Confidence            33322222 12333444  8899988777777767789999988766666543 346699999998876666555553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.25  E-value=1.1e-10  Score=112.47  Aligned_cols=160  Identities=14%  Similarity=0.098  Sum_probs=117.0

Q ss_pred             CcEEEEEEcCCCC--EEEEEeCCeEEEEECCCC--------------cEEEE--------------e-eeCCCeEEEEEe
Q 037288          257 CTVWTADFCTNPS--QAVIGTNLGAAMVDMETG--------------MASWV--------------C-RSKSDILAQQVI  305 (513)
Q Consensus       257 ~~V~~~~~s~~g~--~l~s~s~~~i~vwd~~~~--------------~~~~~--------------~-~~~~~V~~l~~~  305 (513)
                      ..|+|+.|-|.+.  ++++=.++.+.++|.+-.              ....+              . -..+.|..++|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            6899999998443  555556777888865311              11010              0 134568899999


Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC
Q 037288          306 HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL  385 (513)
Q Consensus       306 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~  385 (513)
                      |||++||+.+.||.++|||..+.+...   .+...-+...|                                  ++|+|
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLC----------------------------------vcWSP  342 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLC----------------------------------VCWSP  342 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEE----------------------------------EEEcC
Confidence            999999999999999999999876533   22222233333                                  47788


Q ss_pred             CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-------------------------------C--
Q 037288          386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-------------------------------S--  432 (513)
Q Consensus       386 ~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-------------------------------~--  432 (513)
                      ||+|+++|+.|.-|.||.+.  +...+..-+||...|..  ++|+|                               +  
T Consensus       343 DGKyIvtGGEDDLVtVwSf~--erRVVARGqGHkSWVs~--VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S  418 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFE--ERRVVARGQGHKSWVSV--VAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS  418 (636)
T ss_pred             CccEEEecCCcceEEEEEec--cceEEEeccccccceee--EeecccccccccccccccccccccchhcccccccCCCCC
Confidence            99999999999999999997  66688888999999988  66652                               1  


Q ss_pred             --C-------------CEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          433 --E-------------RFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       433 --g-------------~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                        +             -.+.+.++|-.+.+||+....+..
T Consensus       419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence              1             136788999999999997655443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=4.7e-10  Score=104.42  Aligned_cols=203  Identities=14%  Similarity=0.161  Sum_probs=142.7

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEEeCC---eEEEEECCCCcEEEEee---
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIGTNL---GAAMVDMETGMASWVCR---  294 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s~~---~i~vwd~~~~~~~~~~~---  294 (513)
                      ..|.+.++....++....        ....+..+ ..+..+.-++... ++|+|+..   .+.+||+++.+.++.-.   
T Consensus       123 ~sG~l~~~~~k~~d~hss--------~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp  193 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSS--------KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP  193 (412)
T ss_pred             cCCcEEEEeccCCccccc--------cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence            577888887775543211        11222222 4566676666544 45557654   38999999886665443   


Q ss_pred             -------eCCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcc
Q 037288          295 -------SKSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANI  365 (513)
Q Consensus       295 -------~~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~  365 (513)
                             -+-.++++.|-+.  ...|++++.-+.+++||.+.++.            ||.+++|                
T Consensus       194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR------------PV~~fd~----------------  245 (412)
T KOG3881|consen  194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR------------PVAQFDF----------------  245 (412)
T ss_pred             CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc------------ceeEecc----------------
Confidence                   1224688899887  78999999999999999996653            2222222                


Q ss_pred             cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc-eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA-VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                             ...++++ ....|+++++++|..-|.+..||+|  .... ...+.+-.+.+..  +..+|...+|+++|.|..
T Consensus       246 -------~E~~is~-~~l~p~gn~Iy~gn~~g~l~~FD~r--~~kl~g~~~kg~tGsirs--ih~hp~~~~las~GLDRy  313 (412)
T KOG3881|consen  246 -------LENPISS-TGLTPSGNFIYTGNTKGQLAKFDLR--GGKLLGCGLKGITGSIRS--IHCHPTHPVLASCGLDRY  313 (412)
T ss_pred             -------ccCccee-eeecCCCcEEEEecccchhheeccc--CceeeccccCCccCCcce--EEEcCCCceEEeecccee
Confidence                   1223333 4667899999999999999999998  5553 3448888888877  778899999999999999


Q ss_pred             EEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      |||+|+.+.+++...-. .+.++.+-+.++
T Consensus       314 vRIhD~ktrkll~kvYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  314 VRIHDIKTRKLLHKVYV-KSRLTFILLRDD  342 (412)
T ss_pred             EEEeecccchhhhhhhh-hccccEEEecCC
Confidence            99999999887765322 345667776555

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.21  E-value=1.5e-09  Score=98.65  Aligned_cols=168  Identities=13%  Similarity=0.078  Sum_probs=119.5

Q ss_pred             CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC-ccccccccccccCcCeEEEeeCCeEEE
Q 037288          277 LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR-QRGCSSRAGRRHRIPYSRLQRNDRVTN  355 (513)
Q Consensus       277 ~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~s  355 (513)
                      +.+.|||=...+++..+...++|.++.+.++.  |++. ..+.|+||..... +...   .                   
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~---~-------------------  129 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLH---V-------------------  129 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhhee---e-------------------
Confidence            35889997778888889999999999998654  3333 3689999988733 3221   1                   


Q ss_pred             eEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE-EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC
Q 037288          356 EQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA-SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER  434 (513)
Q Consensus       356 ~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~  434 (513)
                                  .-+...+.+.+++ .-..+..+||. |-.-|.|+|-|+.....++-..+.+|...+.+  ++.+.+|.
T Consensus       130 ------------~et~~NPkGlC~~-~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac--v~Ln~~Gt  194 (346)
T KOG2111|consen  130 ------------IETRSNPKGLCSL-CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC--VALNLQGT  194 (346)
T ss_pred             ------------eecccCCCceEee-cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE--EEEcCCcc
Confidence                        1112223333332 22223344444 34579999999974333345778899999988  77889999


Q ss_pred             EEEEEeCCCc-EEEEeCCCCeEEEEecCC--CCCeEEEEEcCCCceEEeeCCC
Q 037288          435 FVMSGGEDCK-LRIWSIRSGELVFEDKFS--NSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       435 ~l~sg~~Dg~-v~vwd~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .||++|..|+ |||||..+|+++.+++..  ...|.+++|+|+..++|.++.+
T Consensus       195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence            9999999998 799999999999998643  3569999999997666555543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=2.5e-10  Score=104.47  Aligned_cols=179  Identities=18%  Similarity=0.214  Sum_probs=121.9

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCC-cEEEEee---e-----CCCeEEEEEecCC-cEEEEEeCCCeEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETG-MASWVCR---S-----KSDILAQQVIHSG-NVVLCGFRNGAIV  321 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~-~~~~~~~---~-----~~~V~~l~~~~~~-~~l~sg~~dg~i~  321 (513)
                      -.+|+..|+++.++.|+..+.++.|-.|.+|+++-- +.-.+..   +     ..-|++..|+|.. ++++-.+..|+|+
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            357999999999999999999998889999998743 2222222   2     1347899999976 7888888899999


Q ss_pred             EEECCCCccccc-cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          322 TVDVRKRQRGCS-SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       322 iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      +-|+|....--. .+.+.....++..--|                     -..-++|.. +.|+++|+|+++-+.- +|+
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsff---------------------seiIsSISD-vKFs~sGryilsRDyl-tvk  296 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFF---------------------SEIISSISD-VKFSHSGRYILSRDYL-TVK  296 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhH---------------------HHHhhhhhc-eEEccCCcEEEEeccc-eeE
Confidence            999995532110 0111112222111000                     001123333 4788899999987654 899


Q ss_pred             EEecCCCCccceEEecCCCC------------cee-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          401 LYDHRLTTRGAVQSYEGHVN------------SHT-RIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~------------~v~-~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      +||+.+ ..+++.++..|..            .+. ...++|+.++.++++|+....++++++..|.
T Consensus       297 ~wD~nm-e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  297 LWDLNM-EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EEeccc-cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            999953 4558888877742            111 1347889899999999999999999976654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=6.9e-09  Score=105.62  Aligned_cols=174  Identities=10%  Similarity=0.052  Sum_probs=110.9

Q ss_pred             ccCcEEEEEEcCCCCEEEEE-e-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCe--EEEEECCC
Q 037288          255 FKCTVWTADFCTNPSQAVIG-T-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGA--IVTVDVRK  327 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~-s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~--i~iwd~~~  327 (513)
                      +.....+.+|+|||+.++.. + ++  .|.+||+.+++...+..+.......+|+|||+.|+.++ .+|.  |+++|+.+
T Consensus       246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            34445678999999977643 3 33  39999999988766555555567889999998776655 4554  66666655


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC---eEEEEec
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDH  404 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~  404 (513)
                      ++...    +..+.                                 .... ...++|+|++++..+.++   .|.+||+
T Consensus       326 g~~~~----lt~~g---------------------------------~~~~-~~~~SpDG~~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        326 GSAER----LTFQG---------------------------------NYNA-RASVSPDGKKIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             CCeEE----eecCC---------------------------------CCcc-CEEECCCCCEEEEEECCCCceeEEEEEC
Confidence            44211    11000                                 0111 146789999998776543   5899998


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                      .   .+....+. +.....  ...|+|||++|+..+.+   +.|+++++.. .....+..+.+.+...+|+|
T Consensus       368 ~---~g~~~~Lt-~~~~~~--~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        368 S---TGSVRTLT-PGSLDE--SPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             C---CCCeEECC-CCCCCC--CceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            5   33333443 222222  26899999988776653   4688888854 44555555556677888887

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.19  E-value=1.8e-09  Score=113.62  Aligned_cols=206  Identities=9%  Similarity=0.092  Sum_probs=140.6

Q ss_pred             eeEEeccccCcEEEEEEcCCC-CEEEEEeCCe-EEEEECCCC-------cEEEEee-eCCCeEEEEEecCCcEEEEEeCC
Q 037288          248 TMHLVASFKCTVWTADFCTNP-SQAVIGTNLG-AAMVDMETG-------MASWVCR-SKSDILAQQVIHSGNVVLCGFRN  317 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g-~~l~s~s~~~-i~vwd~~~~-------~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~d  317 (513)
                      .+..+..|...|..++.++.. .++++|++++ |++||+..-       +...++. ..+.+.++...+.++.+|+|+.|
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            356688899999999988754 8999997655 999997632       2333343 56679999999999999999999


Q ss_pred             CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CC-CEEEEEec
Q 037288          318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YD-QYFLASSM  395 (513)
Q Consensus       318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~~l~s~s~  395 (513)
                      |.|.+.++.......    ..+....+.                        .....+.+.++..+.. .+ ..++.+..
T Consensus      1120 G~v~~~~id~~~~~~----~~~~~~ri~------------------------n~~~~g~vv~m~a~~~~~~S~~lvy~T~ 1171 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSK----RVATQVRIP------------------------NLKKDGVVVSMHAFTAIVQSHVLVYATD 1171 (1431)
T ss_pred             CeEEEEEcccccccc----ceeeeeecc------------------------cccCCCceEEeecccccccceeEEEEEe
Confidence            999999987631110    000000000                        0111223333333322 22 37888999


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-CCCCeEEEEEcCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-SNSVPSAVCWRTQ  474 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~  474 (513)
                      -+.|..||+|+..........-..+.|+.  ++.+|.+.|++.|...|.+-+||++-+.++....+ +..+++.++.+|-
T Consensus      1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTS--i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTS--IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred             ccceEEecchhhhhHHhhhcCccccceeE--EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence            99999999984332223333334556666  88899999999999999999999999999998654 3467888887776


Q ss_pred             C---ceEEeeCC
Q 037288          475 R---SMGPQIEG  483 (513)
Q Consensus       475 ~---~~~~t~~~  483 (513)
                      .   ...++++.
T Consensus      1250 ~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1250 YPQESVSVSAGS 1261 (1431)
T ss_pred             CCCCceEEEecc
Confidence            2   44444444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.17  E-value=5.9e-11  Score=107.82  Aligned_cols=209  Identities=12%  Similarity=0.078  Sum_probs=141.8

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcE-EEEEeCCCeEEEEECCCCccccccccccc
Q 037288          261 TADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNV-VLCGFRNGAIVTVDVRKRQRGCSSRAGRR  339 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  339 (513)
                      -+.|||+|+++|+.++-.+.|-|.++-+...++..-..|.-+.|..|..+ |.....|+.|.+|++...+...   .+..
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c---kIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC---KIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE---Eecc
Confidence            46899999999999998888889888776555555567888899988854 5555778999999998877533   3332


Q ss_pred             cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecCCeEEEEecCCCCccceEEecCC
Q 037288          340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMDGTVKLYDHRLTTRGAVQSYEGH  418 (513)
Q Consensus       340 h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h  418 (513)
                      ...++.+                                  ..++|+|+ .|.+...|-.|.+|.+.  ..... -+.-.
T Consensus        90 g~agls~----------------------------------~~WSPdgrhiL~tseF~lriTVWSL~--t~~~~-~~~~p  132 (447)
T KOG4497|consen   90 GQAGLSS----------------------------------ISWSPDGRHILLTSEFDLRITVWSLN--TQKGY-LLPHP  132 (447)
T ss_pred             CCCccee----------------------------------eeECCCcceEeeeecceeEEEEEEec--cceeE-Eeccc
Confidence            3333333                                  46788995 55567779999999996  32221 12211


Q ss_pred             CCceeEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee------e-e
Q 037288          419 VNSHTRIQLGVDQSERFVMSGGE-DC--KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH------E-E  488 (513)
Q Consensus       419 ~~~v~~~~~~~s~~g~~l~sg~~-Dg--~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~------~-~  488 (513)
                      ...+..  ++|+|||++.+-.+. |+  .+.|......+++..++...-..+++.|+|++..+|-=+.-+.      | .
T Consensus       133 K~~~kg--~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~  210 (447)
T KOG4497|consen  133 KTNVKG--YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG  210 (447)
T ss_pred             ccCcee--EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec
Confidence            222344  889999999887765 32  2444445566677777766667889999999877775544332      1 0


Q ss_pred             ----eccCCcccceeeeeeccceeeee
Q 037288          489 ----FDLGQRHSWEAWIGTQEGLFRMN  511 (513)
Q Consensus       489 ----~~~~~~~~~~~~~gs~~g~~~~~  511 (513)
                          +..=...++...+|+.||+.|+-
T Consensus       211 lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             cceeEEEeccccceEEeeccchhhhhh
Confidence                11112335667899999999875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=2.3e-09  Score=108.98  Aligned_cols=191  Identities=13%  Similarity=0.030  Sum_probs=122.3

Q ss_pred             CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC---CeEEEEECCCCccccccccccccCcCeEEEeeCC--
Q 037288          277 LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN---GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--  351 (513)
Q Consensus       277 ~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--  351 (513)
                      ..|.+||........+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +..+.+|.   ..+.|+|  
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~---~~~~wSPDG  259 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHN---GAPAFSPDG  259 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCcc---CceeECCCC
Confidence            35899998766655555677789999999999988877643   479999998775433 44455543   3578988  


Q ss_pred             -eEEEeE--------e--ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecCCC
Q 037288          352 -RVTNEQ--------W--FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEGHV  419 (513)
Q Consensus       352 -~~~s~~--------w--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~h~  419 (513)
                       .++.+.        |  +...+..   ..+...........|+|+|+.|+.++ .+|...||++... ......+ ++.
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~-~~~~~~l-~~~  334 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS-GGGASLV-GGR  334 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCe---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEe-cCC
Confidence             444432        2  2222221   22222222333357899999877655 5788999987521 2223333 343


Q ss_pred             CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          420 NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      .  ..  ..|+|||++|+.++.++ +.+||+.+++........  ....+.|+|++.+++.+..
T Consensus       335 ~--~~--~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        335 G--YS--AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             C--CC--ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEc
Confidence            3  23  67899999998887765 666999988765332222  2456889999766665543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.16  E-value=2.7e-09  Score=95.55  Aligned_cols=96  Identities=18%  Similarity=0.260  Sum_probs=74.3

Q ss_pred             EEEcCCCCEEEEE--ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeE
Q 037288          381 QSLQLYDQYFLAS--SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGEL  455 (513)
Q Consensus       381 ~~~~~~~~~l~s~--s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~  455 (513)
                      +.|+|+++.|++.  ..+..|.+||++   ...+..+..  ..+..  +.|+|+|++|++|+.+   |.|.+||+++.+.
T Consensus        65 ~~WsP~g~~favi~g~~~~~v~lyd~~---~~~i~~~~~--~~~n~--i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   65 VAWSPNGNEFAVIYGSMPAKVTLYDVK---GKKIFSFGT--QPRNT--ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             EEECcCCCEEEEEEccCCcccEEEcCc---ccEeEeecC--CCceE--EEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            3667789887654  467899999994   446666643  33334  8899999999998754   6799999999999


Q ss_pred             EEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          456 VFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       456 ~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +....+.  .++.++|+|++.+++++....
T Consensus       138 i~~~~~~--~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen  138 ISTFEHS--DATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             eeccccC--cEEEEEEcCCCCEEEEEEecc
Confidence            9887653  378999999999998887653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=1.3e-08  Score=103.21  Aligned_cols=175  Identities=11%  Similarity=0.059  Sum_probs=107.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEE-e-CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEECC--C
Q 037288          255 FKCTVWTADFCTNPSQAVIG-T-NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVR--K  327 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~-s-~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~--~  327 (513)
                      ....+.+.+|+|||+.|+.. + ++.  |.++|+.++....+..+...+....|+|||+.|+..+ .+|...+|.+.  .
T Consensus       238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            33456789999999988743 3 333  5555676666544444555567789999998666544 45666666553  3


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC---eEEEEec
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDH  404 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~  404 (513)
                      +.... + .+.+                                   ..... ..++|+|++++..+.++   .|.+||+
T Consensus       318 g~~~~-l-t~~g-----------------------------------~~~~~-~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        318 GAAQR-V-TFTG-----------------------------------SYNTS-PRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             CceEE-E-ecCC-----------------------------------CCcCc-eEECCCCCEEEEEEccCCcEEEEEEEC
Confidence            22111 0 0000                                   00111 36889999999877654   5999998


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .   .+....+..+. ...  ...|+|||+.|+.++.++   .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus       360 ~---~g~~~~lt~~~-~~~--~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        360 A---TGQVTALTDTT-RDE--SPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             C---CCCeEEccCCC-Ccc--CceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            5   33333343222 222  378999999988877644   3555566 46656666556667788888875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.15  E-value=6.7e-09  Score=105.60  Aligned_cols=180  Identities=9%  Similarity=0.034  Sum_probs=119.0

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCC--eEEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNG--AIVTVD  324 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg--~i~iwd  324 (513)
                      +..+...+...+|+|||++|+.+..    ..|.+||+.+++......+...+.+++|+|||+.|+ +.+.++  .|++||
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            5556678899999999999986642    249999999987666555666678899999997655 455444  588889


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TVKL  401 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~l  401 (513)
                      +.++...    .+..+......                                  ..|+++++.|+..+. ++  .|.+
T Consensus       265 ~~~~~~~----~l~~~~~~~~~----------------------------------~~~s~dg~~l~~~s~~~g~~~iy~  306 (417)
T TIGR02800       265 LDGKQLT----RLTNGPGIDTE----------------------------------PSWSPDGKSIAFTSDRGGSPQIYM  306 (417)
T ss_pred             CCCCCEE----ECCCCCCCCCC----------------------------------EEECCCCCEEEEEECCCCCceEEE
Confidence            8766432    22222111111                                  256789988876654 33  5777


Q ss_pred             EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      +|+.   ......+..+......  ..|+|+|++|+.++.++   .|.+||+.++.... +... .......|+|++.
T Consensus       307 ~d~~---~~~~~~l~~~~~~~~~--~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~  377 (417)
T TIGR02800       307 MDAD---GGEVRRLTFRGGYNAS--PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGR  377 (417)
T ss_pred             EECC---CCCEEEeecCCCCccC--eEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCC
Confidence            7764   2333344433333333  78999999999888776   79999998865433 2222 2234568999954

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=1.2e-08  Score=103.96  Aligned_cols=177  Identities=10%  Similarity=0.047  Sum_probs=112.5

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE-e-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC--eEEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG-T-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG--AIVTVD  324 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~-s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg--~i~iwd  324 (513)
                      +..+...+...+|+|||+.|+.. + ++  .|.+||+.++....+..+........|+|||+.|+..+ .+|  .|+++|
T Consensus       241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence            44556677889999999987644 3 22  38888999888766666666678899999998776655 333  677788


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKL  401 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~l  401 (513)
                      +..+....    +..+.                                 ..... ..|+|+|+.|+..+.+   ..|.+
T Consensus       321 ~~g~~~~~----lt~~~---------------------------------~~~~~-~~~SpdG~~ia~~~~~~~~~~i~~  362 (435)
T PRK05137        321 ADGSNPRR----ISFGG---------------------------------GRYST-PVWSPRGDLIAFTKQGGGQFSIGV  362 (435)
T ss_pred             CCCCCeEE----eecCC---------------------------------CcccC-eEECCCCCEEEEEEcCCCceEEEE
Confidence            76554221    11111                                 11111 3678999999877654   35778


Q ss_pred             EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED------CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D------g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      ||+.   .+....+.. ...+..  ..|+|||++|+..+.+      ..++++|+..++. ..+.. ...+...+|+|-
T Consensus       363 ~d~~---~~~~~~lt~-~~~~~~--p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp~  433 (435)
T PRK05137        363 MKPD---GSGERILTS-GFLVEG--PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSPL  433 (435)
T ss_pred             EECC---CCceEeccC-CCCCCC--CeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCCC
Confidence            8873   333333332 112233  7899999998765543      2588888876655 34433 334677788774

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=4.7e-09  Score=94.36  Aligned_cols=220  Identities=11%  Similarity=0.071  Sum_probs=135.8

Q ss_pred             ccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEE--Eee-
Q 037288          219 SETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASW--VCR-  294 (513)
Q Consensus       219 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~--~~~-  294 (513)
                      .+...|++.++............++.... +     ......+++|++.+..++++ +++.+.+-+........  ..+ 
T Consensus        90 ~a~a~G~i~~~r~~~~~ss~~L~~ls~~k-i-----~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~  163 (339)
T KOG0280|consen   90 DAHARGQIQLYRNDEDESSVHLRGLSSKK-I-----SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV  163 (339)
T ss_pred             eccccceEEEEeeccceeeeeecccchhh-h-----hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc
Confidence            45567788777766433332222222111 0     00135688999988888877 55557655544443332  233 


Q ss_pred             eCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288          295 SKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM  373 (513)
Q Consensus       295 ~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~  373 (513)
                      |.-+.+..+|+-. .+++++|+.|+.+..||+|.+.... ..                                 ....|
T Consensus       164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i-~~---------------------------------n~kvH  209 (339)
T KOG0280|consen  164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI-WH---------------------------------NSKVH  209 (339)
T ss_pred             cceeeeeeecccCCCceEEecCCCceEEEEEecCCccee-ee---------------------------------cceee
Confidence            7778888899854 4899999999999999999554211 11                                 12334


Q ss_pred             CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 037288          374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~~Dg~v~vwd~~~  452 (513)
                      ..+|+++..-.|.+.++++|+.|..|++||.|... +++..-. -.+.|.  ++..+|.-. .|+.++.-.-.+|-++..
T Consensus       210 ~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-kPl~~~~-v~GGVW--Ri~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  210 TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-KPLFKAK-VGGGVW--RIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             ecceEEEecCCCCCceEEEeccccceeeeehhccc-CccccCc-cccceE--EEEecchhhhHHHHHHHhcCceEEEecc
Confidence            56677777777889999999999999999998432 2443222 124554  477777532 233334444467777655


Q ss_pred             Ce-----EEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          453 GE-----LVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       453 ~~-----~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      +.     .+...+.|.+-+..-.|.....++||++
T Consensus       286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             cccchheeeeccccccceeeccccccccceeeeee
Confidence            43     3344566776666666754456788865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.10  E-value=1.6e-08  Score=106.81  Aligned_cols=254  Identities=17%  Similarity=0.182  Sum_probs=143.9

Q ss_pred             eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288          123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC  202 (513)
Q Consensus       123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~  202 (513)
                      .+++++|+.||+|++|+..+-.... ...                    -....|+|.      .+.+.++.+.+..   
T Consensus      1061 ~s~FvsgS~DGtVKvW~~~k~~~~~-~s~--------------------rS~ltys~~------~sr~~~vt~~~~~--- 1110 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEG-GSA--------------------RSELTYSPE------GSRVEKVTMCGNG--- 1110 (1431)
T ss_pred             CceEEEecCCceEEEeeehhhhcCc-cee--------------------eeeEEEecc------CCceEEEEeccCC---
Confidence            3789999999999999984432110 000                    111223322      3445555554433   


Q ss_pred             ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCC-EEEEEeC-CeE
Q 037288          203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPS-QAVIGTN-LGA  279 (513)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~-~l~s~s~-~~i  279 (513)
                             ...+     .+..+|.+.++.++............   .+..+......|..-+|.. .+. .++.+.+ ++|
T Consensus      1111 -------~~~A-----v~t~DG~v~~~~id~~~~~~~~~~~~---ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1111 -------DQFA-----VSTKDGSVRVLRIDHYNVSKRVATQV---RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred             -------CeEE-----EEcCCCeEEEEEccccccccceeeee---ecccccCCCceEEeecccccccceeEEEEEeccce
Confidence                   1221     12568888888777532211110000   0111222222344444433 233 5555554 559


Q ss_pred             EEEECCCCcEEEEee---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288          280 AMVDMETGMASWVCR---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       280 ~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~  356 (513)
                      ..||+......+..+   .++.|++++.+|.+++++.|+..|.+.+||+|-+..+.  .--..+..++..+..++     
T Consensus      1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~----- 1248 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--SWEHPARAPIRHVWLCP----- 1248 (1431)
T ss_pred             EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee--cccCcccCCcceEEeec-----
Confidence            999999887666665   45679999999999999999999999999999776532  11122335555543322     


Q ss_pred             EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCccceEEecCC----------------
Q 037288          357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRGAVQSYEGH----------------  418 (513)
Q Consensus       357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~~~~~~~~h----------------  418 (513)
                                                +.+.....++++  ..+.|.+|++...  .+-.++-..                
T Consensus      1249 --------------------------~~~~~S~~vs~~~~~~nevs~wn~~~g--~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1249 --------------------------TYPQESVSVSAGSSSNNEVSTWNMETG--LRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred             --------------------------cCCCCceEEEecccCCCceeeeecccC--cceEEEEcCCCCcchhhhcccccCC
Confidence                                      223334444443  4677888988532  122222111                


Q ss_pred             -CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          419 -VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       419 -~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                       ...+.....++...+.++++|+.|..|+.||....+..
T Consensus      1301 kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             CCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence             11222222444445678999999999999998776544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=8.6e-09  Score=96.16  Aligned_cols=202  Identities=13%  Similarity=0.109  Sum_probs=143.8

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc----EEEEeeeCCCeEEEEEecCC-cEEEEEeCC--CeEEEEECC
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM----ASWVCRSKSDILAQQVIHSG-NVVLCGFRN--GAIVTVDVR  326 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~d--g~i~iwd~~  326 (513)
                      ....+|..++.. |+.++++-+++.+.+|....+.    ....+.....+..+.-++.. .++++|+..  ..+.+||+.
T Consensus       103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            344556665553 6666666677779999887443    23334445567777666644 677889998  899999998


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~  405 (513)
                      +.+.+...+.++...-.                           +..+--++.+.++++ ..+.||+++.-+.|++||.+
T Consensus       182 ~~~qiw~aKNvpnD~L~---------------------------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~  234 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLG---------------------------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR  234 (412)
T ss_pred             cceeeeeccCCCCcccc---------------------------ceeeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence            87543311222211110                           011111222233332 16789999999999999998


Q ss_pred             CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      . ++.++..|.--.+++++  +...|+|++|++|..-|.+..||++.++++.. +++-.+.|+++..+|...++|+++.|
T Consensus       235 ~-qRRPV~~fd~~E~~is~--~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  235 H-QRRPVAQFDFLENPISS--TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             c-cCcceeEeccccCccee--eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence            3 34489888877888877  67789999999999999999999999998887 78888899999999999999999988


Q ss_pred             ee
Q 037288          485 IH  486 (513)
Q Consensus       485 ~~  486 (513)
                      -.
T Consensus       312 Ry  313 (412)
T KOG3881|consen  312 RY  313 (412)
T ss_pred             ee
Confidence            65

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=4.1e-08  Score=100.13  Aligned_cols=184  Identities=9%  Similarity=0.016  Sum_probs=116.1

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCC--eEEEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNG--AIVTV  323 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg--~i~iw  323 (513)
                      .+..+...+....|+|||+.|+..+..    .|.+||+.+++...+....+.+.+..|+|||+.|+ +...+|  .|++|
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~  272 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM  272 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence            355667789999999999998865422    38899999988766555555567899999998665 555555  68888


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TVK  400 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~  400 (513)
                      |+.++...    .+..+......                                  ..|+|+|+.|+..+. +|  .|.
T Consensus       273 d~~~~~~~----~lt~~~~~~~~----------------------------------~~~spDg~~i~f~s~~~g~~~iy  314 (430)
T PRK00178        273 DLASRQLS----RVTNHPAIDTE----------------------------------PFWGKDGRTLYFTSDRGGKPQIY  314 (430)
T ss_pred             ECCCCCeE----EcccCCCCcCC----------------------------------eEECCCCCEEEEEECCCCCceEE
Confidence            99876532    22222211111                                  357889988776654 33  466


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-C--KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-g--~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      ++|+.  . +....+.......  ....|+|+|++|+..+.+ +  .|.+||+.+++... +.. ........|+|++.+
T Consensus       315 ~~d~~--~-g~~~~lt~~~~~~--~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~  387 (430)
T PRK00178        315 KVNVN--G-GRAERVTFVGNYN--ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTM  387 (430)
T ss_pred             EEECC--C-CCEEEeecCCCCc--cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCE
Confidence            66764  2 2222222111111  226789999999876653 3  58899998886533 322 122335689999544


Q ss_pred             EE
Q 037288          478 GP  479 (513)
Q Consensus       478 ~~  479 (513)
                      ++
T Consensus       388 i~  389 (430)
T PRK00178        388 LI  389 (430)
T ss_pred             EE
Confidence            43

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.08  E-value=9.9e-09  Score=100.68  Aligned_cols=168  Identities=8%  Similarity=0.041  Sum_probs=123.6

Q ss_pred             CCCCEEEEE-eCCeEEEEECCCCcEEEEee----eCCCeEEEEEe------c--------------CCcEEEEEeCCCeE
Q 037288          266 TNPSQAVIG-TNLGAAMVDMETGMASWVCR----SKSDILAQQVI------H--------------SGNVVLCGFRNGAI  320 (513)
Q Consensus       266 ~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~------~--------------~~~~l~sg~~dg~i  320 (513)
                      |...++|.. +|+.+++||...++...-+.    ..+..++..|.      |              |-.+++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            345678866 55669999999887655443    22334444442      1              23478888889999


Q ss_pred             EEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      .+|++..++... ...-..|.+.|.++                                  ..+.+-.+|.+++.|+.+.
T Consensus        83 ~~ys~~~g~it~-~~st~~h~~~v~~~----------------------------------~~~~~~~ciyS~~ad~~v~  127 (541)
T KOG4547|consen   83 LLYSVAGGEITA-KLSTDKHYGNVNEI----------------------------------LDAQRLGCIYSVGADLKVV  127 (541)
T ss_pred             EEEEecCCeEEE-EEecCCCCCcceee----------------------------------ecccccCceEecCCceeEE
Confidence            999998887543 11223455555553                                  3344667899999999999


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .|+..  ....+..+.+....+..  ++++|||+.|++++.  .|++||+.+++.+..|.+|.++|++++|...
T Consensus       128 ~~~~~--~~~~~~~~~~~~~~~~s--l~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  128 YILEK--EKVIIRIWKEQKPLVSS--LCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             EEecc--cceeeeeeccCCCccce--EEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            99986  44467777776666655  888999999998875  5999999999999999999999999999876

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=6e-08  Score=98.83  Aligned_cols=208  Identities=12%  Similarity=0.039  Sum_probs=128.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC--C--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCCe--EEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN--L--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNGA--IVTVD  324 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~--~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg~--i~iwd  324 (513)
                      +..+...+....|+|||+.|+..++  +  .|.+||+.+++...+..........+|+|||+.|+ +.+.+|.  |+++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            4455678899999999998886542  2  38889999887655444444456889999998665 5566665  77778


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC---eEEEeE----------eecccCcccceeEee-cCCCceEEEEEcCCCCEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ----------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~----------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l  390 (513)
                      +.+++    ...+..+........|+|   .++..+          ++...++.   ..+. ....... ..++|+|++|
T Consensus       293 l~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~-~~~SpDG~~l  364 (448)
T PRK04792        293 IATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLG-GSITPDGRSM  364 (448)
T ss_pred             CCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcC-eeECCCCCEE
Confidence            87665    334555555667778888   333322          23323321   1111 1111122 3689999998


Q ss_pred             EEEec-CCe--EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEecCCCC
Q 037288          391 LASSM-DGT--VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DC--KLRIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       391 ~s~s~-dg~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg--~v~vwd~~~~~~~~~~~~~~~  464 (513)
                      +..+. ++.  |.++|+.   .+....+..... .  ....|+|+|+.|+..+. +|  .+++++. +|.....+..+.+
T Consensus       365 ~~~~~~~g~~~I~~~dl~---~g~~~~lt~~~~-d--~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g  437 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLE---TGAMQVLTSTRL-D--ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG  437 (448)
T ss_pred             EEEEecCCceEEEEEECC---CCCeEEccCCCC-C--CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC
Confidence            87665 343  4556764   233333332211 1  12478999998876554 33  3777786 5666666665556


Q ss_pred             CeEEEEEcCC
Q 037288          465 VPSAVCWRTQ  474 (513)
Q Consensus       465 ~v~~v~~~p~  474 (513)
                      .+...+|+|-
T Consensus       438 ~~~~p~Wsp~  447 (448)
T PRK04792        438 EVKSPAWSPF  447 (448)
T ss_pred             CcCCCccCCC
Confidence            6778888874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.3e-09  Score=105.52  Aligned_cols=164  Identities=11%  Similarity=0.089  Sum_probs=117.2

Q ss_pred             EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeE
Q 037288          291 WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHT  370 (513)
Q Consensus       291 ~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~  370 (513)
                      .+.+|.+-|.|++|+.+|.+|++|+.|-.+.|||.-..+...  ..-.+|...|.++.|-|                   
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~TgHtaNIFsvKFvP-------------------  103 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH--SISTGHTANIFSVKFVP-------------------  103 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceee--eeecccccceeEEeeec-------------------
Confidence            345688999999999999999999999999999998665432  34468888888877744                   


Q ss_pred             eecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc--------cceEEecCCCCceeEEEEEEcCCC-CEEEEEeC
Q 037288          371 TFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR--------GAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGE  441 (513)
Q Consensus       371 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~--------~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~  441 (513)
                                   ..+...+++|..|..|+++|+...+.        .....+..|.+.|..  ++..|++ ..+.++++
T Consensus       104 -------------~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKr--ia~~p~~PhtfwsasE  168 (758)
T KOG1310|consen  104 -------------YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKR--IATAPNGPHTFWSASE  168 (758)
T ss_pred             -------------cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhh--eecCCCCCceEEEecC
Confidence                         12567888999999999999963211        145566788888877  6777887 77899999


Q ss_pred             CCcEEEEeCCCCeEEE-------Ee-cCC--CCCeEEEEEcCC-CceEEeeCCC-eeeeec
Q 037288          442 DCKLRIWSIRSGELVF-------ED-KFS--NSVPSAVCWRTQ-RSMGPQIEGK-IHEEFD  490 (513)
Q Consensus       442 Dg~v~vwd~~~~~~~~-------~~-~~~--~~~v~~v~~~p~-~~~~~t~~~~-~~~~~~  490 (513)
                      ||+|+-+|++......       .+ ..+  --...++..+|. ..+||-++.+ +.+.+|
T Consensus       169 DGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  169 DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             CcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence            9999999998743111       11 111  123567888998 3444444443 334333

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.99  E-value=6.4e-07  Score=88.43  Aligned_cols=242  Identities=9%  Similarity=0.056  Sum_probs=137.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDIL  300 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~  300 (513)
                      ..|.+.+.+..+...            +..+......-..+.++|||+++.+++ |+.|.++|+.+++.+..+.......
T Consensus        14 ~~~~v~viD~~t~~~------------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~   81 (369)
T PF02239_consen   14 GSGSVAVIDGATNKV------------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR   81 (369)
T ss_dssp             GGTEEEEEETTT-SE------------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE
T ss_pred             CCCEEEEEECCCCeE------------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc
Confidence            456777777654332            233444333345578999999887665 5669999999999999888777889


Q ss_pred             EEEEecCCcEEEEEe-CCCeEEEEECCCCccccccccccc-------cCcCeEEEeeCC---eEEEeE------eecccC
Q 037288          301 AQQVIHSGNVVLCGF-RNGAIVTVDVRKRQRGCSSRAGRR-------HRIPYSRLQRND---RVTNEQ------WFELKA  363 (513)
Q Consensus       301 ~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~-------h~~~v~~v~~~~---~~~s~~------w~~~~~  363 (513)
                      ++++++||++++++. .++.+.++|.++.+...   .+..       ....+.+|-.++   .++..-      |.+...
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~---~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK---TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEE---EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             eEEEcCCCCEEEEEecCCCceeEecccccccee---ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            999999999888775 58999999999877643   3222       233455555444   333332      544322


Q ss_pred             cccc--eeEeecCCCceEEEEEcCCCCEEEEE-ecCCeEEEEecCCC---------------------------------
Q 037288          364 NIWP--SHTTFMPSSISCLQSLQLYDQYFLAS-SMDGTVKLYDHRLT---------------------------------  407 (513)
Q Consensus       364 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~lwd~~~~---------------------------------  407 (513)
                      ...+  ...+........ ..++|++++|+++ ..++.|-++|....                                 
T Consensus       159 d~~~~~~~~i~~g~~~~D-~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~  237 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHD-GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG  237 (369)
T ss_dssp             TSSCEEEEEEE--TTEEE-EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred             cccccceeeecccccccc-cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence            2222  223333333333 4788999988765 34667777776521                                 


Q ss_pred             --------------------CccceEEecCCCCceeEEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCeEEEEecCC-
Q 037288          408 --------------------TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG----GEDCKLRIWSIRSGELVFEDKFS-  462 (513)
Q Consensus       408 --------------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg----~~Dg~v~vwd~~~~~~~~~~~~~-  462 (513)
                                          ..+.++++......   +-+..+|++++|.+.    ...++|.++|..+.+.+..+... 
T Consensus       238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~  314 (369)
T PF02239_consen  238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP  314 (369)
T ss_dssp             SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred             ccceecccccCCccccchhhcCeEEEEEECCCCc---ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence                                00011222211111   114568999999887    44589999999999988887532 


Q ss_pred             CCCeEEEEEcCCCc-eEEeeC
Q 037288          463 NSVPSAVCWRTQRS-MGPQIE  482 (513)
Q Consensus       463 ~~~v~~v~~~p~~~-~~~t~~  482 (513)
                      ...+..+.|++++. +++|.-
T Consensus       315 ~~~~~h~ef~~dG~~v~vS~~  335 (369)
T PF02239_consen  315 GKRVVHMEFNPDGKEVWVSVW  335 (369)
T ss_dssp             T--EEEEEE-TTSSEEEEEEE
T ss_pred             CCcEeccEECCCCCEEEEEEe
Confidence            23588999999953 444443

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.99  E-value=7.8e-08  Score=86.65  Aligned_cols=206  Identities=13%  Similarity=0.108  Sum_probs=135.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC---CCC-EEEEE-eCCeEEEEECCCCcEEEEee--
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT---NPS-QAVIG-TNLGAAMVDMETGMASWVCR--  294 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~---~g~-~l~s~-s~~~i~vwd~~~~~~~~~~~--  294 (513)
                      ..|.+.+|++.+.....       .  ....+.-+..+..+.|+.   +|. .++-+ +.+.|.++..........++  
T Consensus        44 R~Gkl~Lys~~d~~~~~-------l--~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l  114 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSP-------L--DTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL  114 (339)
T ss_pred             eccceEEEeecccccCc-------c--ceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc
Confidence            35667777766433321       0  111223345666777753   455 22222 55667777654333222222  


Q ss_pred             --e---CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288          295 --S---KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH  369 (513)
Q Consensus       295 --~---~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~  369 (513)
                        .   .....++.|++.+.-++++..+|.+.+-+........ ++..++|.-+.+...|+.                  
T Consensus       115 s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~-vq~wk~He~E~Wta~f~~------------------  175 (339)
T KOG0280|consen  115 SSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK-VQTWKVHEFEAWTAKFSD------------------  175 (339)
T ss_pred             chhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee-cccccccceeeeeeeccc------------------
Confidence              0   1124688899999889999999999976665554433 567888888777765532                  


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE-EecCCCCceeEEEEEEc-CCCCEEEEEeCCCcEEE
Q 037288          370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ-SYEGHVNSHTRIQLGVD-QSERFVMSGGEDCKLRI  447 (513)
Q Consensus       370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~-~~~~h~~~v~~~~~~~s-~~g~~l~sg~~Dg~v~v  447 (513)
                                     .+.+.+.+|+.|+.+..||+|.+. ..+. ..+.|...|.+  +.-+ |.+.+|++|+.|-.|++
T Consensus       176 ---------------~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~S--I~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  176 ---------------KEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVS--IYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             ---------------CCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEE--EecCCCCCceEEEeccccceee
Confidence                           245789999999999999999433 3333 34568877766  3333 46889999999999999


Q ss_pred             EeCC-CCeEEEEecCCCCCeEEEEEcCC
Q 037288          448 WSIR-SGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       448 wd~~-~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      ||.+ -++++..-.. .+.|..++++|.
T Consensus       238 ~DtRnm~kPl~~~~v-~GGVWRi~~~p~  264 (339)
T KOG0280|consen  238 LDTRNMGKPLFKAKV-GGGVWRIKHHPE  264 (339)
T ss_pred             eehhcccCccccCcc-ccceEEEEecch
Confidence            9999 4778776544 466999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.7e-07  Score=94.85  Aligned_cols=190  Identities=9%  Similarity=-0.001  Sum_probs=113.3

Q ss_pred             ccccCcEEEEEEcCCCCE--EE-EEe-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC----eEE
Q 037288          253 ASFKCTVWTADFCTNPSQ--AV-IGT-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG----AIV  321 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~--l~-s~s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg----~i~  321 (513)
                      ......+..-.|+|||+.  ++ +.. ++  .|.+.++.+++...+....+.....+|+|||+.|+..+ .+|    .+.
T Consensus       181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence            334456678899999975  32 232 22  38888999888766666666677899999997666543 233    334


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEE
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVK  400 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~  400 (513)
                      .||+..+.... ...+..                                 ....+..-..|+|+|+.|+..+ .+|...
T Consensus       261 ~~~~~~g~~g~-~~~lt~---------------------------------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~  306 (428)
T PRK01029        261 SFSLETGAIGK-PRRLLN---------------------------------EAFGTQGNPSFSPDGTRLVFVSNKDGRPR  306 (428)
T ss_pred             EeecccCCCCc-ceEeec---------------------------------CCCCCcCCeEECCCCCEEEEEECCCCCce
Confidence            46665431100 001110                                 0001111136889999888665 466656


Q ss_pred             EEecCCCCc-cceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          401 LYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       401 lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      +|.+..... +....+..+...+..  ..|+|||++|+..+.+   ..|++||+.+++.... ......+....|+|++.
T Consensus       307 ly~~~~~~~g~~~~~lt~~~~~~~~--p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        307 IYIMQIDPEGQSPRLLTKKYRNSSC--PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSL  383 (428)
T ss_pred             EEEEECcccccceEEeccCCCCccc--eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCC
Confidence            664431111 234444444333333  7899999998876543   4699999998876443 33334567899999965


Q ss_pred             eEE
Q 037288          477 MGP  479 (513)
Q Consensus       477 ~~~  479 (513)
                      .++
T Consensus       384 ~L~  386 (428)
T PRK01029        384 HLV  386 (428)
T ss_pred             EEE
Confidence            433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.7e-07  Score=94.77  Aligned_cols=177  Identities=8%  Similarity=0.008  Sum_probs=105.7

Q ss_pred             cCcEEEEEEcCCCCEEEEEeC--C--e--EEEEECCCC---cEEEEeeeC-CCeEEEEEecCCcEEEEE-eCCCeEEEEE
Q 037288          256 KCTVWTADFCTNPSQAVIGTN--L--G--AAMVDMETG---MASWVCRSK-SDILAQQVIHSGNVVLCG-FRNGAIVTVD  324 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~--~--~--i~vwd~~~~---~~~~~~~~~-~~V~~l~~~~~~~~l~sg-~~dg~i~iwd  324 (513)
                      .......+|+|||+.|+..++  +  .  +.+|++..+   ....+.... ......+|+|||+.|+.. ..+|...+|.
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            344567899999999886653  2  2  344777653   334444332 335678999999865554 4567555554


Q ss_pred             --CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeE
Q 037288          325 --VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTV  399 (513)
Q Consensus       325 --~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i  399 (513)
                        +......  ...+..+...+                                 . ...|+|+|+.|+..+.+   ..|
T Consensus       310 ~~~~~~g~~--~~~lt~~~~~~---------------------------------~-~p~wSPDG~~Laf~~~~~g~~~I  353 (428)
T PRK01029        310 MQIDPEGQS--PRLLTKKYRNS---------------------------------S-CPAWSPDGKKIAFCSVIKGVRQI  353 (428)
T ss_pred             EECcccccc--eEEeccCCCCc---------------------------------c-ceeECCCCCEEEEEEcCCCCcEE
Confidence              4321110  11111111111                                 1 13678999998876653   468


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .+||+.   .+....+......+..  ..|+|||++|+....   +..|+++|+.+++...... ..+.+...+|+|.
T Consensus       354 ~v~dl~---~g~~~~Lt~~~~~~~~--p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~  425 (428)
T PRK01029        354 CVYDLA---TGRDYQLTTSPENKES--PSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAF  425 (428)
T ss_pred             EEEECC---CCCeEEccCCCCCccc--eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCC
Confidence            999985   3334444433223333  789999998875433   3578999998887654443 3455678888875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=1.6e-07  Score=95.34  Aligned_cols=194  Identities=12%  Similarity=0.013  Sum_probs=118.7

Q ss_pred             eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe---CCCeEEEEECCCCccccccccccccCcCeEEEeeCC---
Q 037288          278 GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF---RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---  351 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---  351 (513)
                      .|.+||........+..+...+.+.+|+|||+.|+..+   .+..|.+||+.+++... +..+.++   +....|+|   
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~---~~~~~~SPDG~  255 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRH---NGAPAFSPDGS  255 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCC---cCCeEECCCCC
Confidence            48889988766655566777899999999998777543   34679999998775433 3344444   44678988   


Q ss_pred             eEEEeE----------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-CeEEEEecCCCCccceEEecCCCC
Q 037288          352 RVTNEQ----------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-GTVKLYDHRLTTRGAVQSYEGHVN  420 (513)
Q Consensus       352 ~~~s~~----------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~lwd~~~~~~~~~~~~~~h~~  420 (513)
                      .++...          |+...+...  ........+. ...|+|+|+.|+..+.+ +...||.+.. ..+....+..+..
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~--~lt~~~~~~~-~~~wSPDG~~I~f~s~~~g~~~Iy~~d~-~~g~~~~lt~~~~  331 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNT-EPTWFPDSQNLAYTSDQAGRPQVYKVNI-NGGAPQRITWEGS  331 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEE--EccCCCCCcC-ceEECCCCCEEEEEeCCCCCceEEEEEC-CCCCeEEeecCCC
Confidence            333221          454444321  1111222233 35789999988877654 4555554321 2233344433333


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          421 SHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       421 ~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      ....  ..|+|||++|+..+.+   ..|++||+.+++.. .+.. ........|+|++.+++....
T Consensus       332 ~~~~--~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        332 QNQD--ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             CccC--EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEc
Confidence            3323  7899999998876553   35889999888744 3332 222456789999765555443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=3.7e-08  Score=102.62  Aligned_cols=185  Identities=12%  Similarity=0.073  Sum_probs=137.0

Q ss_pred             cEEEEEEcCCCCEEE-EEeCCeEEEEECCCCcEEEEeeeCCCe-----EEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          258 TVWTADFCTNPSQAV-IGTNLGAAMVDMETGMASWVCRSKSDI-----LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~-s~s~~~i~vwd~~~~~~~~~~~~~~~V-----~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      .|....+.-+...++ ..+++.+.+||...+.......+...+     .-+.++++.-++++|+.-+.|.+|+..... .
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~  167 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-K  167 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-C
Confidence            333344444555555 446778999999887766666655442     222345666789999999999999998433 2


Q ss_pred             cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc
Q 037288          332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA  411 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~  411 (513)
                      +  ..+.+|.+.|.++.                                  ++.+|.++++.|+|.++++|++.  +...
T Consensus       168 p--~~l~GHeG~iF~i~----------------------------------~s~dg~~i~s~SdDRsiRlW~i~--s~~~  209 (967)
T KOG0974|consen  168 P--IRLKGHEGSIFSIV----------------------------------TSLDGRYIASVSDDRSIRLWPID--SREV  209 (967)
T ss_pred             c--ceecccCCceEEEE----------------------------------EccCCcEEEEEecCcceeeeecc--cccc
Confidence            2  26889999888854                                  45699999999999999999997  4332


Q ss_pred             -eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288          412 -VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       412 -~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                       ..+.-+|...+..  ++|+|+  .++++++|.+.++|+. .++.+.++..| ...+..++.+++....+|.+.|-.
T Consensus       210 ~~~~~fgHsaRvw~--~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~  281 (967)
T KOG0974|consen  210 LGCTGFGHSARVWA--CCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST  281 (967)
T ss_pred             cCcccccccceeEE--EEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence             2355679988755  888887  8999999999999975 45555577666 456999999999888888887754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=4e-09  Score=114.81  Aligned_cols=190  Identities=15%  Similarity=0.195  Sum_probs=147.4

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +.-+-..|.++.-+|.-.+.++| +|+.|++|.-..++.+...+  ..+.|+.+.|+.+|+.+..+..||.+.+|... +
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            44455688899999987777777 45669999998888776666  44679999999999999999999999999987 3


Q ss_pred             ccccccccccccCcCeEEEeeCC-eEEEeE----------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND-RVTNEQ----------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~----------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      +.   +.....|........|-. .+++.+          ||.............|.++++++ .+-|..+.|++|+.+|
T Consensus      2283 k~---~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l-~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KP---YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL-AYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cc---eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE-EEcCcceEEEecCCcC
Confidence            32   557788888887777744 222222          88766554444446677788886 7778999999999999


Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK  460 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~  460 (513)
                      .|++||+|  +.+..++++.           ++ ...++++|+..|.++||++....+++++.
T Consensus      2359 ~v~l~D~r--qrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIR--QRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cEEEeehH--HHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            99999998  6666666653           23 46689999999999999999988887764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.93  E-value=1.6e-08  Score=105.33  Aligned_cols=151  Identities=11%  Similarity=0.096  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEECCC-CcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          260 WTADFCTNPSQAVIGT-NLGAAMVDMET-GMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~s-~~~i~vwd~~~-~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      .-+-++++.-++++|+ -+.|.+|+... .....+..|.+.+.++.|+.||.++++.+.|.++++|++.+.+...  .+.
T Consensus       137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~  214 (967)
T KOG0974|consen  137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTG  214 (967)
T ss_pred             EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--ccc
Confidence            3344566777888885 56699998763 3355677799999999999999999999999999999999886422  256


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                      -+|...|..+.|                                  .++  .+++++.|.+.++|+..   ...+..|.+
T Consensus       215 fgHsaRvw~~~~----------------------------------~~n--~i~t~gedctcrvW~~~---~~~l~~y~~  255 (967)
T KOG0974|consen  215 FGHSARVWACCF----------------------------------LPN--RIITVGEDCTCRVWGVN---GTQLEVYDE  255 (967)
T ss_pred             ccccceeEEEEe----------------------------------ccc--eeEEeccceEEEEEecc---cceehhhhh
Confidence            677777777443                                  334  89999999999999873   445668888


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      |.... ...++.+++..++++++.|+.+++|++..
T Consensus       256 h~g~~-iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  256 HSGKG-IWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhcc-eeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            87653 35588888889999999999999999864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=2.4e-07  Score=90.51  Aligned_cols=224  Identities=13%  Similarity=0.180  Sum_probs=143.2

Q ss_pred             EEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEecc-ccCcEEEEEEcCCCC-E
Q 037288          193 IKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVAS-FKCTVWTADFCTNPS-Q  270 (513)
Q Consensus       193 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~s~~g~-~  270 (513)
                      |...+-....++-+|...++.+..-+.....+.+.+|........   -++       ..++ ....=-.+.|++-|. +
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~---~~~-------a~ksFFkadkvqm~WN~~gt~L  232 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH---QPV-------ANKSFFKADKVQMKWNKLGTAL  232 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc---chh-------hhccccccceeEEEeccCCceE
Confidence            333444445555555555666666666677777777665411100   000       0111 112334567777665 3


Q ss_pred             EEEE-e-----------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEE--EEEeCCCeEEEEECCCCcccccccc
Q 037288          271 AVIG-T-----------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVV--LCGFRNGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       271 l~s~-s-----------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l--~sg~~dg~i~iwd~~~~~~~~~~~~  336 (513)
                      |+.+ +           +.++++.+++...+..-+...++|.++.|+++|.-+  +-|-+-.++.|||++..-       
T Consensus       233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-------  305 (566)
T KOG2315|consen  233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-------  305 (566)
T ss_pred             EEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-------
Confidence            3222 2           234888888855565556678999999999999654  445567899999998542       


Q ss_pred             ccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCccceE
Q 037288          337 GRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTRGAVQ  413 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~~~~~  413 (513)
                                                       .+..+.+....+.|+|.|++++.++.+   |.|-+||..  ..+++.
T Consensus       306 ---------------------------------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~--n~K~i~  350 (566)
T KOG2315|consen  306 ---------------------------------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP--NRKLIA  350 (566)
T ss_pred             ---------------------------------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEecc--chhhcc
Confidence                                             111222333336889999999988864   889999997  555777


Q ss_pred             EecCCCCceeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          414 SYEGHVNSHTRIQLGVDQSERFVMSGGE------DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       414 ~~~~h~~~v~~~~~~~s~~g~~l~sg~~------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .+..-...  .  +.|+|||.+++++..      |+.++||+. +|.+++...... ....++|-|.
T Consensus       351 ~~~a~~tt--~--~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~  411 (566)
T KOG2315|consen  351 KFKAANTT--V--FEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF  411 (566)
T ss_pred             ccccCCce--E--EEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence            77754432  2  799999999998865      789999996 667666644322 5778888865

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.93  E-value=2.4e-08  Score=93.67  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=107.1

Q ss_pred             cEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcE----EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          258 TVWTADFCTNPSQAVIGT-NLGAAMVDMETGMA----SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~----~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      .++.+..+++++++|.+. ++...+++......    .....-...-+++.|..+...+..+..-|.++-+|+-+.....
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            556677788899998774 44555666554332    2222233344566666655555555445555555544322111


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~  412 (513)
                       ....-||-..+..                                  +.++||+++++++..|+.|++-...  ....+
T Consensus       144 -~~~~lGhvSml~d----------------------------------VavS~D~~~IitaDRDEkIRvs~yp--a~f~I  186 (390)
T KOG3914|consen  144 -CEPILGHVSMLLD----------------------------------VAVSPDDQFIITADRDEKIRVSRYP--ATFVI  186 (390)
T ss_pred             -cchhhhhhhhhhe----------------------------------eeecCCCCEEEEecCCceEEEEecC--cccch
Confidence             3456677776666                                  4567799999999999999988764  33355


Q ss_pred             EEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          413 QSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       413 ~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      ..| -||...|..+++  - ++..|++||.|++|++||+.+|+++.++
T Consensus       187 esfclGH~eFVS~isl--~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  187 ESFCLGHKEFVSTISL--T-DNYLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             hhhccccHhheeeeee--c-cCceeeecCCCCcEEEEecccCCccccc
Confidence            555 479999887443  3 4556899999999999999999988764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=6.5e-07  Score=91.31  Aligned_cols=173  Identities=13%  Similarity=0.084  Sum_probs=107.0

Q ss_pred             CcEEEEEEcCCCCEEEEE-e-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC--eEEEEECCCCc
Q 037288          257 CTVWTADFCTNPSQAVIG-T-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG--AIVTVDVRKRQ  329 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~-s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg--~i~iwd~~~~~  329 (513)
                      ..+....|+|||+.|+.. . ++  .|.+||+.++....+..+........|+|||+.|+..+ .+|  .|+++|+.+++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            345578999999988744 2 23  38889999988766555555577789999997665444 343  57777776654


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-C--eEEEEecCC
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-G--TVKLYDHRL  406 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g--~i~lwd~~~  406 (513)
                      ... + ...+                                    .......++|+|+.++..+.+ +  .|.++|+. 
T Consensus       323 ~~~-l-t~~~------------------------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~-  363 (430)
T PRK00178        323 AER-V-TFVG------------------------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ-  363 (430)
T ss_pred             EEE-e-ecCC------------------------------------CCccceEECCCCCEEEEEEccCCceEEEEEECC-
Confidence            321 0 0000                                    011113678999999877653 3  47788885 


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                        .+....+.. .....  ...|+|||++|+..+.+   ..|.++++.. .....+..+.+.+...+|+|.
T Consensus       364 --tg~~~~lt~-~~~~~--~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        364 --RGSVRILTD-TSLDE--SPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             --CCCEEEccC-CCCCC--CceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence              333333332 11111  25799999998876654   3477777744 444445445556777788874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.90  E-value=3.5e-05  Score=75.99  Aligned_cols=214  Identities=8%  Similarity=0.041  Sum_probs=125.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEe--CCeEEEEECCC-CcEEE---Eeee-----------CCCeEEEEEecCCcEEEEEeC-C
Q 037288          256 KCTVWTADFCTNPSQAVIGT--NLGAAMVDMET-GMASW---VCRS-----------KSDILAQQVIHSGNVVLCGFR-N  317 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~-~~~~~---~~~~-----------~~~V~~l~~~~~~~~l~sg~~-d  317 (513)
                      ...-..++++|++++|+++.  ++.|.++++.. +....   ...+           .....++.|+|+|+++++... .
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            34556799999999998874  56699999986 44322   2211           234789999999987777643 4


Q ss_pred             CeEEEEECCCCcccc-ccccc-cccCcCeEEEeeCC---eEEEeE--------eecc--cCcccceeEeecC------CC
Q 037288          318 GAIVTVDVRKRQRGC-SSRAG-RRHRIPYSRLQRND---RVTNEQ--------WFEL--KANIWPSHTTFMP------SS  376 (513)
Q Consensus       318 g~i~iwd~~~~~~~~-~~~~~-~~h~~~v~~v~~~~---~~~s~~--------w~~~--~~~~~~~~~~~~~------~~  376 (513)
                      ..|.+|++....... ....+ .......+.+.|+|   .++...        ++..  .+.+.....+...      ..
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence            689999997765211 01112 12345567888888   222222        3333  4433333333221      11


Q ss_pred             ceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeC--
Q 037288          377 ISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSI--  450 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~--  450 (513)
                      ..+-+.++|+|++|.++.. ++.|.+|++......  .+..+......  ...+.++|+|++|+++++ ++.|.+|++  
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~--Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF--PRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS--EEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC--ccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            2344578999999887664 678999999521111  33333321221  244889999999998875 568999866  


Q ss_pred             CCCeEEEEec-CCCCCeEEEEE
Q 037288          451 RSGELVFEDK-FSNSVPSAVCW  471 (513)
Q Consensus       451 ~~~~~~~~~~-~~~~~v~~v~~  471 (513)
                      .+|.+...-. ..-....+|.|
T Consensus       324 ~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  324 DTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCcEEEecccccCCCCEEEeC
Confidence            5777665532 22334566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.89  E-value=1.5e-09  Score=109.90  Aligned_cols=114  Identities=16%  Similarity=0.255  Sum_probs=99.4

Q ss_pred             eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288          293 CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF  372 (513)
Q Consensus       293 ~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~  372 (513)
                      +.|.++|.|+.|...|.+|++|+.|..++||...+...   +..+.||.+.|+.++.                       
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---lAs~rGhs~ditdlav-----------------------  240 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---LASCRGHSGDITDLAV-----------------------  240 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhh---hccCCCCccccchhcc-----------------------
Confidence            45888999999999999999999999999999888776   4589999999988543                       


Q ss_pred             cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                                 +.+.-++++++.|..|++|.++  ...++..+.||++.|+.  ++|+|-.    +.+.||++++||.+
T Consensus       241 -----------s~~n~~iaaaS~D~vIrvWrl~--~~~pvsvLrghtgavta--iafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  241 -----------SSNNTMIAAASNDKVIRVWRLP--DGAPVSVLRGHTGAVTA--IAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             -----------chhhhhhhhcccCceEEEEecC--CCchHHHHhccccceee--eccCccc----cCCCCCceEecccc
Confidence                       4466778899999999999997  56699999999999988  8888865    77889999999987

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=5.3e-08  Score=93.39  Aligned_cols=204  Identities=13%  Similarity=0.116  Sum_probs=136.7

Q ss_pred             eEEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEe---e-eCC---CeEEEEEecCC-cEEEEEeCCC
Q 037288          249 MHLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVC---R-SKS---DILAQQVIHSG-NVVLCGFRNG  318 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~---~-~~~---~V~~l~~~~~~-~~l~sg~~dg  318 (513)
                      ...+..|.++|..++.-|+.. -|.+++ |+.+.-+|+.++.....+   . +..   ...+++.+|.. +.+++|+.|.
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence            345778999999999999655 344554 555788899887643322   1 223   35888888866 6999999999


Q ss_pred             eEEEEECCCCcccc---cccccccc------CcCeEEEeeCC---eEEEeE-----eecccC--cc---cce-------e
Q 037288          319 AIVTVDVRKRQRGC---SSRAGRRH------RIPYSRLQRND---RVTNEQ-----WFELKA--NI---WPS-------H  369 (513)
Q Consensus       319 ~i~iwd~~~~~~~~---~~~~~~~h------~~~v~~v~~~~---~~~s~~-----w~~~~~--~~---~~~-------~  369 (513)
                      .+++||.+.-....   .+..+..|      .-.|+++.|+.   .+++.-     |.....  ..   .+.       +
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence            99999988654321   02222222      34578888884   333322     222111  11   010       1


Q ss_pred             E-ee---cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288          370 T-TF---MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKL  445 (513)
Q Consensus       370 ~-~~---~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v  445 (513)
                      . .+   ....|..+-+|-|...|+++|+.=|.|.||+-.  ....++-+++...-|.|  +--+|--..||++|.|..|
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~--t~eii~~MegDr~VVNC--LEpHP~~PvLAsSGid~DV  460 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK--TGEIIRFMEGDRHVVNC--LEPHPHLPVLASSGIDHDV  460 (559)
T ss_pred             hhhcccccccccceeeeccCccceEEecCccceEEEEecc--hhHHHHHhhcccceEec--cCCCCCCchhhccCCccce
Confidence            1 11   123577777899999999999999999999964  33367777776666666  7778888899999999999


Q ss_pred             EEEeCCCCeEE
Q 037288          446 RIWSIRSGELV  456 (513)
Q Consensus       446 ~vwd~~~~~~~  456 (513)
                      +||-..+.+..
T Consensus       461 KIWTP~~~er~  471 (559)
T KOG1334|consen  461 KIWTPLTAERA  471 (559)
T ss_pred             eeecCCccccc
Confidence            99987555433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.83  E-value=1.1e-06  Score=89.50  Aligned_cols=208  Identities=13%  Similarity=0.075  Sum_probs=121.5

Q ss_pred             cCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-e-CC--eE
Q 037288          204 TDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-T-NL--GA  279 (513)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s-~~--~i  279 (513)
                      .+.|..+.++.+....  ....+.++++.+..             ...+..+...+.+++|+|||+.|+.. + ++  .|
T Consensus       196 ~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~-------------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       196 AWSPDGQKLAYVSFES--GKPEIYVQDLATGQ-------------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             cCCCCCCEEEEEEcCC--CCcEEEEEECCCCC-------------EEEeecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            3455555554443322  22456666655321             11233455667789999999977644 2 22  38


Q ss_pred             EEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-CC--eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288          280 AMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-NG--AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       280 ~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~  356 (513)
                      .+||+.++....+..+........|+|||+.|+..+. ++  .|+++|+.+++..    .+..+...+            
T Consensus       261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~------------  324 (417)
T TIGR02800       261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN------------  324 (417)
T ss_pred             EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc------------
Confidence            8999998876665555555667899999987765543 33  5777787655421    111111111            


Q ss_pred             EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC---eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC
Q 037288          357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE  433 (513)
Q Consensus       357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g  433 (513)
                                           .. ..++|++++++.++.++   .|.+||+.  . +....+..... ..  ...|+|+|
T Consensus       325 ---------------------~~-~~~spdg~~i~~~~~~~~~~~i~~~d~~--~-~~~~~l~~~~~-~~--~p~~spdg  376 (417)
T TIGR02800       325 ---------------------AS-PSWSPDGDLIAFVHREGGGFNIAVMDLD--G-GGERVLTDTGL-DE--SPSFAPNG  376 (417)
T ss_pred             ---------------------cC-eEECCCCCEEEEEEccCCceEEEEEeCC--C-CCeEEccCCCC-CC--CceECCCC
Confidence                                 11 36788999999888776   78889985  2 33333332221 12  25789999


Q ss_pred             CEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEE
Q 037288          434 RFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCW  471 (513)
Q Consensus       434 ~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~  471 (513)
                      ++|+..+.++   .+++.+. +++....+....+.+..++|
T Consensus       377 ~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       377 RMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            9988877754   3555554 34444555443334444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.4e-05  Score=74.78  Aligned_cols=233  Identities=12%  Similarity=0.171  Sum_probs=135.6

Q ss_pred             CCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCc----------EEEEEEcC
Q 037288          197 GKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCT----------VWTADFCT  266 (513)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~~~~s~  266 (513)
                      |+.+.-.+.++..+.++...++    .|.+.++-+...-.....         .....|.+.          +....+.|
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~----~g~v~v~p~~~dG~l~~~---------v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYH----SGSVSVYPLQADGSLQPV---------VQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEcc----CceEEEEEcccCCccccc---------eeeeecCCCCCCccccCCccceeeeCC
Confidence            3333444455555566555553    366777666543222111         112223333          88899999


Q ss_pred             CCCEEEEE--eCCeEEEEECCCCcEEEE----eeeCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccc
Q 037288          267 NPSQAVIG--TNLGAAMVDMETGMASWV----CRSKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRR  339 (513)
Q Consensus       267 ~g~~l~s~--s~~~i~vwd~~~~~~~~~----~~~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~  339 (513)
                      ++++|++.  +.+.|.+|++..|.....    +.....-.-|.|+|++++.+.-++ +++|.+|....... . +..++.
T Consensus       155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g-~-~~~lQ~  232 (346)
T COG2706         155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG-K-FEELQT  232 (346)
T ss_pred             CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc-e-EEEeee
Confidence            99999887  456799999998864332    233445789999999998776655 99999999887411 0 222221


Q ss_pred             cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCccceEEe---
Q 037288          340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRGAVQSY---  415 (513)
Q Consensus       340 h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~~~~~~---  415 (513)
                      +..-                       |  .-.......+-+.++++|++|.++.. ...|-+|.+.... +.+...   
T Consensus       233 i~tl-----------------------P--~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~~~~~~  286 (346)
T COG2706         233 IDTL-----------------------P--EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLELVGIT  286 (346)
T ss_pred             eccC-----------------------c--cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEEEEEEe
Confidence            1000                       0  00111122223467899999988765 3478888876222 222211   


Q ss_pred             cCCCCceeEEEEEEcCCCCEEEEEeCCC-cEEEEeC--CCCeEEEEec-CCCCCeEEEEEc
Q 037288          416 EGHVNSHTRIQLGVDQSERFVMSGGEDC-KLRIWSI--RSGELVFEDK-FSNSVPSAVCWR  472 (513)
Q Consensus       416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-~v~vwd~--~~~~~~~~~~-~~~~~v~~v~~~  472 (513)
                      ..+..  .-..+.|+++|++|+++.+|+ .|.+|..  .+|++-.... .......+|.|.
T Consensus       287 ~teg~--~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         287 PTEGQ--FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             ccCCc--CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            22222  124488999999999998864 5788865  4566544433 222334556553

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=7.8e-07  Score=87.20  Aligned_cols=222  Identities=8%  Similarity=0.039  Sum_probs=130.4

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeC--CeEEEEECCCCcEEEEeeeCCCeEEEE-EecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGTN--LGAAMVDMETGMASWVCRSKSDILAQQ-VIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s~--~~i~vwd~~~~~~~~~~~~~~~V~~l~-~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      ..|...-+.+..+|||+|+.+.+.  -.|++||+..-.........+.|..+. .+-|-..++--..|.+|-+..--...
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h  127 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH  127 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence            356678889999999998765443  349999998654332222333343333 33333334444456666554322111


Q ss_pred             cccccccccccCcCeEEEeeCC----eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND----RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      ...   .+   ...-..+.++.    .++.|+      ..+..|..  ...+....+...++..++...+|++|+.+|.|
T Consensus       128 y~~---RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  128 YRT---RI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             eee---ec---CcCCccccccCCCccEEEeecCcceEEEEcccccc--ccccccccccceeeeecCccceEEecccCceE
Confidence            000   00   00112233332    222222      33333332  23444443444445677788899999999999


Q ss_pred             EEEecCCCCccceEEec------CCCCc---eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEE
Q 037288          400 KLYDHRLTTRGAVQSYE------GHVNS---HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAV  469 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~------~h~~~---v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v  469 (513)
                      ..||.|  ....+.++.      .|.+.   ....++.|+-+|-.+++|..+|.|.|||+++.+++..-.+. .-+|..+
T Consensus       200 EfwDpR--~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  200 EFWDPR--DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL  277 (703)
T ss_pred             EEecch--hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence            999998  444343332      22222   22234889888999999999999999999999998875432 4578899


Q ss_pred             EEcCC--CceEEeeCCC
Q 037288          470 CWRTQ--RSMGPQIEGK  484 (513)
Q Consensus       470 ~~~p~--~~~~~t~~~~  484 (513)
                      .|.+.  ...++|.+..
T Consensus       278 ~~~~~~~q~~v~S~Dk~  294 (703)
T KOG2321|consen  278 DWQDTDQQNKVVSMDKR  294 (703)
T ss_pred             cccccCCCceEEecchH
Confidence            99776  4455555433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.79  E-value=7.3e-08  Score=87.39  Aligned_cols=175  Identities=14%  Similarity=0.149  Sum_probs=115.5

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc----EEEEeeeC-----CCeEEEEEecCC-cEEEEEeCCCeEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM----ASWVCRSK-----SDILAQQVIHSG-NVVLCGFRNGAIV  321 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~----~~~~~~~~-----~~V~~l~~~~~~-~~l~sg~~dg~i~  321 (513)
                      -..|...|+++.|+.|...+.++.+-.|.+|+++-..    .+.+..|.     .-|++..|+|.. +++.-.+..|.|+
T Consensus       168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            3678899999999999999999988889999987432    22222222     247899999976 6778888899999


Q ss_pred             EEECCCCccccc-cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          322 TVDVRKRQRGCS-SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       322 iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      +-|+|.....-. .+.+....+++.. +|                    .-..-++|.. ..|+++|+++++-+.- +|+
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~-~f--------------------f~eivsSISD-~kFs~ngryIlsRdyl-tvk  304 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDV-DF--------------------FEEIVSSISD-FKFSDNGRYILSRDYL-TVK  304 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccc-hh--------------------HHHHhhhhcc-eEEcCCCcEEEEeccc-eEE
Confidence            999995432110 0011111111110 00                    0001122333 4688899999987765 899


Q ss_pred             EEecCCCCccceEEecCCCC------------cee-EEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          401 LYDHRLTTRGAVQSYEGHVN------------SHT-RIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~------------~v~-~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      +||.++ ...+++++..|..            .+. ...+.|+.|.+.+++|+..+..-++-+
T Consensus       305 iwDvnm-~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         305 IWDVNM-AKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEeccc-ccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            999984 3448888765532            221 245788999999999999888877764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.79  E-value=4.8e-07  Score=83.37  Aligned_cols=229  Identities=13%  Similarity=0.125  Sum_probs=158.9

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEE-ECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMV-DMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vw-d~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ..+.||.+.|++...-|-..-+.+.++ .+++|| ..+.++.-..+.  .+++++++.+.++...|++|-.+|++.-+.+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            447899999999988886666666655 459999 455555433333  4667999999999999999999999999977


Q ss_pred             CCCcccc-ccccccccCcCeEEEeeCC---eEEEeE------eeccc-CcccceeEeecCC-CceEEEEEcCCCCEEEEE
Q 037288          326 RKRQRGC-SSRAGRRHRIPYSRLQRND---RVTNEQ------WFELK-ANIWPSHTTFMPS-SISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       326 ~~~~~~~-~~~~~~~h~~~v~~v~~~~---~~~s~~------w~~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~  393 (513)
                      ...-... ..+....|...+..+-|+.   .+++.+      |.-.+ +.......+.... ...+      +-.+...|
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~------d~~~~fvG  171 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQF------DALYAFVG  171 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCce------eeEEEEec
Confidence            5432211 1557789999999999876   555554      33221 2211112221111 1111      11145566


Q ss_pred             ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCeEEEEEc
Q 037288          394 SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       394 s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~~~~v~~v~~~  472 (513)
                      ...|.|.+-.+.....+++.++.+|.+.+++  +.|++..+.|++|..|..+.+||+...+ ...++.+|...|..+++.
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~--l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTC--LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEE--EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            6777777776653334488899999999988  8999999999999999999999997655 344567788889888888


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      +--..+.+.+.|..
T Consensus       250 ~~t~~l~S~~edg~  263 (404)
T KOG1409|consen  250 QHTRQLISCGEDGG  263 (404)
T ss_pred             hhheeeeeccCCCe
Confidence            87666666655544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.76  E-value=5e-08  Score=106.58  Aligned_cols=132  Identities=14%  Similarity=0.186  Sum_probs=94.6

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe---CC-eEEEEECCCCc---EEEE
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT---NL-GAAMVDMETGM---ASWV  292 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s---~~-~i~vwd~~~~~---~~~~  292 (513)
                      .+.+|.+.+|+..            +. .....+.|.....++.|-.  ..+++++   |+ .+.+||..-..   ++. 
T Consensus      2269 ~d~dg~l~l~q~~------------pk-~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS------------PK-PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred             eccCCceeecccC------------Cc-ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-
Confidence            3456666666554            11 2445678888999988865  5555442   33 39999965433   233 


Q ss_pred             eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288          293 CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF  372 (513)
Q Consensus       293 ~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~  372 (513)
                      ..|.+.++++++.|..++|++|+++|.|++||++..+...   .++                                  
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h---~~~---------------------------------- 2375 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH---TFQ---------------------------------- 2375 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH---Hhh----------------------------------
Confidence            4588899999999999999999999999999999876533   111                                  


Q ss_pred             cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec
Q 037288          373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE  416 (513)
Q Consensus       373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~  416 (513)
                               ++. ...+|++|+..|.|+||++.  ..+.++++.
T Consensus      2376 ---------~~~-~~~~f~~~ss~g~ikIw~~s--~~~ll~~~p 2407 (2439)
T KOG1064|consen 2376 ---------ALD-TREYFVTGSSEGNIKIWRLS--EFGLLHTFP 2407 (2439)
T ss_pred             ---------hhh-hhheeeccCcccceEEEEcc--ccchhhcCc
Confidence                     123 46789999999999999997  445555553

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.75  E-value=8.2e-07  Score=81.89  Aligned_cols=152  Identities=11%  Similarity=0.004  Sum_probs=103.7

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeCCeEEEEEC-CCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDM-ETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~-~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      ....|...|..+-|+-...++++.+.++-..|-. +.+..+.-+.....-+++.|.-.  +.+.|...|.|.+-.+....
T Consensus       109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~  186 (404)
T KOG1409|consen  109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNG  186 (404)
T ss_pred             hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecC
Confidence            3668999999999998888888877666545643 33333222222222233333322  67778788888887776665


Q ss_pred             cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      ... +.++.+|.+++.++.|.+   .+++|.       |++............+...+..+ +.-+--+.+.+++.||.|
T Consensus       187 ~~~-i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l-~~~~~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  187 CQL-ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL-SYAQHTRQLISCGEDGGI  264 (404)
T ss_pred             Cce-EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh-hhhhhheeeeeccCCCeE
Confidence            554 778999999999999999   566665       88876665544444555555554 333456788999999999


Q ss_pred             EEEecCC
Q 037288          400 KLYDHRL  406 (513)
Q Consensus       400 ~lwd~~~  406 (513)
                      .+||+..
T Consensus       265 ~~w~mn~  271 (404)
T KOG1409|consen  265 VVWNMNV  271 (404)
T ss_pred             EEEeccc
Confidence            9999864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.73  E-value=6.7e-07  Score=88.11  Aligned_cols=161  Identities=12%  Similarity=0.141  Sum_probs=113.6

Q ss_pred             CCCEEEEEeC-CeEEEEECCCCcEEEEee---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCc
Q 037288          267 NPSQAVIGTN-LGAAMVDMETGMASWVCR---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI  342 (513)
Q Consensus       267 ~g~~l~s~s~-~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~  342 (513)
                      +...++-|.. +.|.++++..|+..+.+.   |.+.|.++.++.+-..|.+++.|+.+..|+.......+   ...+...
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~  145 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKP  145 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCC
Confidence            4456677754 449999999999877775   77889999999888999999999999999998776433   2222222


Q ss_pred             CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCce
Q 037288          343 PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH  422 (513)
Q Consensus       343 ~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v  422 (513)
                      -                                 +.+ .+++||+..+++|+  +.|++||+.  +.+.+.+|.||.++|
T Consensus       146 ~---------------------------------~~s-l~is~D~~~l~~as--~~ik~~~~~--~kevv~~ftgh~s~v  187 (541)
T KOG4547|consen  146 L---------------------------------VSS-LCISPDGKILLTAS--RQIKVLDIE--TKEVVITFTGHGSPV  187 (541)
T ss_pred             c---------------------------------cce-EEEcCCCCEEEecc--ceEEEEEcc--CceEEEEecCCCcce
Confidence            2                                 222 46788999999988  789999997  666999999999999


Q ss_pred             eEEEEEEcCC---CCEEEE-EeCCCcEEEEeCCC----CeEEEEecCCCCCeEE
Q 037288          423 TRIQLGVDQS---ERFVMS-GGEDCKLRIWSIRS----GELVFEDKFSNSVPSA  468 (513)
Q Consensus       423 ~~~~~~~s~~---g~~l~s-g~~Dg~v~vwd~~~----~~~~~~~~~~~~~v~~  468 (513)
                      ..+.+.-+-+   |.++++ ...+..+.+|-+..    +...+.+...+.+++.
T Consensus       188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~  241 (541)
T KOG4547|consen  188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTS  241 (541)
T ss_pred             EEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEe
Confidence            8854433322   566654 34456677886544    2333444444444433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.67  E-value=9e-05  Score=69.47  Aligned_cols=253  Identities=11%  Similarity=0.106  Sum_probs=160.2

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe----CCeEEEEECC--CCcEEEEee--
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT----NLGAAMVDME--TGMASWVCR--  294 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s----~~~i~vwd~~--~~~~~~~~~--  294 (513)
                      ...+.+|++++......         ...+-.+.....=++|+|+++.|.++.    +++|..|.++  +|+...+-.  
T Consensus        15 s~gI~v~~ld~~~g~l~---------~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~   85 (346)
T COG2706          15 SQGIYVFNLDTKTGELS---------LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT   85 (346)
T ss_pred             CCceEEEEEeCcccccc---------hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence            55677777774433322         122445557788899999998877663    3447666555  466443322  


Q ss_pred             -eCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccccCcC----------eEEEeeCC--eEE-EeE--
Q 037288          295 -SKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRRHRIP----------YSRLQRND--RVT-NEQ--  357 (513)
Q Consensus       295 -~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~----------v~~v~~~~--~~~-s~~--  357 (513)
                       ...+-..++++++|++|+++.. .|.|.++-++.............|.+.          +....+.|  +++ +..  
T Consensus        86 ~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG  165 (346)
T COG2706          86 LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG  165 (346)
T ss_pred             cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence             2233488999999999998876 589999999764322213334445554          67777888  333 332  


Q ss_pred             ------eecccCcccceeEeec--CCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCcc---ceEEec----CCCCc
Q 037288          358 ------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRG---AVQSYE----GHVNS  421 (513)
Q Consensus       358 ------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~---~~~~~~----~h~~~  421 (513)
                            |++..+.+.+......  ...... +.|+|++++..+.+. +++|-+|..... .+   .++++.    ...+.
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH-i~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRH-IVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcce-EEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCC
Confidence                  7777777665544333  334445 488999998876654 999999998632 12   333321    22334


Q ss_pred             eeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--CeEEEE--ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          422 HTRIQLGVDQSERFVMSGGE-DCKLRIWSIRS--GELVFE--DKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       422 v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~~--~~~~~~--~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ...-++.+++||++|.++.. ...|-+|.+..  +++...  ...+....+...+++.+.+|+..+.+-.
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence            44556889999999988754 34788887754  443322  3344555889999999877777666655

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=7.2e-08  Score=93.66  Aligned_cols=171  Identities=12%  Similarity=0.098  Sum_probs=115.2

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCC-------cEEEEee-eCCCeEEEEEecCCcEEEEEeCCCe
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETG-------MASWVCR-SKSDILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~-------~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~  319 (513)
                      +..+.||+..|..++--.+.+-++++ .|++|++|.+...       .+..++. |+.+|.++.|-.+-+.++++  ||-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            45688999999988766655555554 6778999987632       3566665 88899999999888877765  899


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEE-ecCC
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLAS-SMDG  397 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~-s~dg  397 (513)
                      |.+||.--++...  +.....                                ..+.+..+.++.. +...++.| +...
T Consensus       806 iHlWDPFigr~La--q~~dap--------------------------------k~~a~~~ikcl~nv~~~iliAgcsaeS  851 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLA--QMEDAP--------------------------------KEGAGGNIKCLENVDRHILIAGCSAES  851 (1034)
T ss_pred             ceeecccccchhH--hhhcCc--------------------------------ccCCCceeEecccCcchheeeeccchh
Confidence            9999987665422  000000                                0111222223332 34444444 7789


Q ss_pred             eEEEEecCCCCccceEEec-----CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          398 TVKLYDHRLTTRGAVQSYE-----GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~-----~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      +|+++|.|  ..+....++     +....+.  ++++.+.|+++++|-.+|+|.+.|.++|+.+..+
T Consensus       852 TVKl~DaR--sce~~~E~kVcna~~Pna~~R--~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  852 TVKLFDAR--SCEWTCELKVCNAPGPNALTR--AIAVADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             hheeeecc--cccceeeEEeccCCCCchhee--EEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            99999998  443333332     2223333  4778899999999999999999999999977743

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=4.9e-05  Score=74.84  Aligned_cols=215  Identities=11%  Similarity=0.101  Sum_probs=136.3

Q ss_pred             EEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCC--cEEEE-----EeCCCeEEEEECCCCcccc
Q 037288          260 WTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSG--NVVLC-----GFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~--~~l~s-----g~~dg~i~iwd~~~~~~~~  332 (513)
                      |+..|+.|..+.|--..+.+.+|++...+.....-|...|..+.++|.+  ..||+     ++.-+.|+||.........
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~  208 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ  208 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence            8999999988877666677999998875543333367779999999874  34433     3556789999876332211


Q ss_pred             ccccccccCcCeEEEeeCC-----eEEEeE-eecccCccc------------ceeEe--ecCCCceEEEEEcCCCCEEEE
Q 037288          333 SSRAGRRHRIPYSRLQRND-----RVTNEQ-WFELKANIW------------PSHTT--FMPSSISCLQSLQLYDQYFLA  392 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~-----~~~s~~-w~~~~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~l~s  392 (513)
                      .+..-.=....-..+.|++     .+++.+ .|.......            ....+  .-.++|.++ .|++++..|++
T Consensus       209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv-~W~~s~~EF~V  287 (566)
T KOG2315|consen  209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDV-TWSPSGREFAV  287 (566)
T ss_pred             hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEE-EECCCCCEEEE
Confidence            0101000122233455665     222222 111110000            01122  224566665 67788876654


Q ss_pred             --EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288          393 --SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFEDKFSNSVPS  467 (513)
Q Consensus       393 --~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~~~~~~~v~  467 (513)
                        |-+=-++.|||++   ..++..+-  .++-..  +-|+|.|++|+.+|.   -|.+-|||+.+.+++..+...+  -+
T Consensus       288 vyGfMPAkvtifnlr---~~~v~df~--egpRN~--~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt  358 (566)
T KOG2315|consen  288 VYGFMPAKVTIFNLR---GKPVFDFP--EGPRNT--AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TT  358 (566)
T ss_pred             EEecccceEEEEcCC---CCEeEeCC--CCCccc--eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ce
Confidence              5677889999996   44665553  333333  789999999988776   4789999999999999887755  46


Q ss_pred             EEEEcCCCceEEeeCCC
Q 037288          468 AVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       468 ~v~~~p~~~~~~t~~~~  484 (513)
                      -+.|+|++.+|.|+...
T Consensus       359 ~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  359 VFEWSPDGEYFLTATTA  375 (566)
T ss_pred             EEEEcCCCcEEEEEecc
Confidence            79999998877776655

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.65  E-value=6e-06  Score=81.58  Aligned_cols=162  Identities=11%  Similarity=0.070  Sum_probs=103.5

Q ss_pred             eCCeEEEEECCCCcEEEEeeeCCCe-EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeE
Q 037288          275 TNLGAAMVDMETGMASWVCRSKSDI-LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRV  353 (513)
Q Consensus       275 s~~~i~vwd~~~~~~~~~~~~~~~V-~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  353 (513)
                      .++.|.+.|..+.+.+..+.....+ ..+.|+|||+++++++.||.|.++|+.+.+...                     
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---------------------   72 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---------------------   72 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE---------------------
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE---------------------
Confidence            4677999999999999988866665 457899999999999999999999999987533                     


Q ss_pred             EEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecCC-------CCceeEE
Q 037288          354 TNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEGH-------VNSHTRI  425 (513)
Q Consensus       354 ~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~h-------~~~v~~~  425 (513)
                                      .+.......+ ..++++|++++++. .++.+.++|..  ..++++.+...       ...+.. 
T Consensus        73 ----------------~i~~G~~~~~-i~~s~DG~~~~v~n~~~~~v~v~D~~--tle~v~~I~~~~~~~~~~~~Rv~a-  132 (369)
T PF02239_consen   73 ----------------TIKVGGNPRG-IAVSPDGKYVYVANYEPGTVSVIDAE--TLEPVKTIPTGGMPVDGPESRVAA-  132 (369)
T ss_dssp             ----------------EEE-SSEEEE-EEE--TTTEEEEEEEETTEEEEEETT--T--EEEEEE--EE-TTTS---EEE-
T ss_pred             ----------------EEecCCCcce-EEEcCCCCEEEEEecCCCceeEeccc--cccceeecccccccccccCCCcee-
Confidence                            2222222222 47789999999776 58999999987  45566665432       122222 


Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCceE
Q 037288          426 QLGVDQSER-FVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       426 ~~~~s~~g~-~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~  478 (513)
                       +..+|... ++++--.-+.|.+-|....+.+.. ............|.|++.+|
T Consensus       133 -Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~  186 (369)
T PF02239_consen  133 -IVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF  186 (369)
T ss_dssp             -EEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred             -EEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence             55567776 555555558888888877654432 22234567889999996543

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=3.7e-06  Score=85.80  Aligned_cols=157  Identities=12%  Similarity=0.037  Sum_probs=98.5

Q ss_pred             eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-C--CeEEEEECCCCccccccccccccCcCeEEEeeCCeEE
Q 037288          278 GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-N--GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT  354 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  354 (513)
                      .+.++|........+......+.+..|+|||+.|+..+. +  ..|++||+.+++... +..+.++.             
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~-------------  264 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGIN-------------  264 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCc-------------
Confidence            466778776655555667778999999999987776543 3  368888988765322 11111110             


Q ss_pred             EeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE-EecCCe--EEEEecCCCCccceEEecCCCCceeEEEEEEcC
Q 037288          355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA-SSMDGT--VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ  431 (513)
Q Consensus       355 s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~  431 (513)
                                              ....|+|+|+.|+. .+.+|.  |.++|+.   .+.+..+..+......  .+|+|
T Consensus       265 ------------------------~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~---tg~~~~lt~~~~~~~~--p~wSp  315 (448)
T PRK04792        265 ------------------------GAPRFSPDGKKLALVLSKDGQPEIYVVDIA---TKALTRITRHRAIDTE--PSWHP  315 (448)
T ss_pred             ------------------------CCeeECCCCCEEEEEEeCCCCeEEEEEECC---CCCeEECccCCCCccc--eEECC
Confidence                                    01367899998875 455665  6667774   3344555545433333  78999


Q ss_pred             CCCEEEEEeC-CC--cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288          432 SERFVMSGGE-DC--KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       432 ~g~~l~sg~~-Dg--~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      ||++|+..+. ++  .|+++|+.+++.... ..........+|+|++..+
T Consensus       316 DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        316 DGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSM  364 (448)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEE
Confidence            9998876554 33  577778887775432 2222234457899996443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.55  E-value=0.00016  Score=67.70  Aligned_cols=181  Identities=14%  Similarity=0.134  Sum_probs=114.2

Q ss_pred             EEEEEEc-CCCCEEEEEeCCeEEEEECCCCcEEEEeee------CCCeEEEEEecCCcEEEEEeCC--------CeEEEE
Q 037288          259 VWTADFC-TNPSQAVIGTNLGAAMVDMETGMASWVCRS------KSDILAQQVIHSGNVVLCGFRN--------GAIVTV  323 (513)
Q Consensus       259 V~~~~~s-~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~------~~~V~~l~~~~~~~~l~sg~~d--------g~i~iw  323 (513)
                      ...+++. +++.++++ ..+++.++|..+++...+...      ......+++.++|++.++....        |.|..+
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~  120 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI  120 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred             CceEEEEccCCEEEEE-EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence            6677777 56555544 456666679999876555543      1237899999999977766543        456666


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE-EEecCCeEEEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL-ASSMDGTVKLY  402 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~lw  402 (513)
                      +.. ++...    +...-                                  ....-++++++++.|+ +-+..+.|..+
T Consensus       121 ~~~-~~~~~----~~~~~----------------------------------~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen  121 DPD-GKVTV----VADGL----------------------------------GFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             ETT-SEEEE----EEEEE----------------------------------SSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             CCC-CeEEE----EecCc----------------------------------ccccceEECCcchheeecccccceeEEE
Confidence            666 32211    00000                                  1112257888998765 55678889999


Q ss_pred             ecCCCCcc--ceEEe---cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc-CC-C
Q 037288          403 DHRLTTRG--AVQSY---EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR-TQ-R  475 (513)
Q Consensus       403 d~~~~~~~--~~~~~---~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~-p~-~  475 (513)
                      ++......  ....+   ....+..-.  ++++.+|++.++....+.|.++|.. |+++..+......+++++|. ++ .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG--~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  162 DLDADGGELSNRRVFIDFPGGPGYPDG--LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             EEETTTCCEEEEEEEEE-SSSSCEEEE--EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred             eccccccceeeeeeEEEcCCCCcCCCc--ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence            98522221  11222   222222333  8889999988888889999999977 99888877665689999994 55 7


Q ss_pred             ceEEeeC
Q 037288          476 SMGPQIE  482 (513)
Q Consensus       476 ~~~~t~~  482 (513)
                      .+++|+.
T Consensus       239 ~L~vTta  245 (246)
T PF08450_consen  239 TLYVTTA  245 (246)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEeC
Confidence            7888765

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.55  E-value=0.00023  Score=70.23  Aligned_cols=225  Identities=9%  Similarity=0.075  Sum_probs=132.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeC-----CeEEEEECCC--CcEEE--Eee-eCCCeEEEEEecCCcEEEEEeC-CCeEEEEEC
Q 037288          257 CTVWTADFCTNPSQAVIGTN-----LGAAMVDMET--GMASW--VCR-SKSDILAQQVIHSGNVVLCGFR-NGAIVTVDV  325 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~-----~~i~vwd~~~--~~~~~--~~~-~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~  325 (513)
                      ....-++++|++++|.+...     +.|..|++..  +....  ... .......++++|++++|+++.. +|.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34566888999998887744     3587887765  44322  222 2334678999999999888875 899999999


Q ss_pred             CCCcccccccccc-----------ccCcCeEEEeeCC---eEEEeE--------eecccC--cccceeEeec--CCCceE
Q 037288          326 RKRQRGCSSRAGR-----------RHRIPYSRLQRND---RVTNEQ--------WFELKA--NIWPSHTTFM--PSSISC  379 (513)
Q Consensus       326 ~~~~~~~~~~~~~-----------~h~~~v~~v~~~~---~~~s~~--------w~~~~~--~~~~~~~~~~--~~~v~~  379 (513)
                      .............           .......++.++|   .++...        |+....  .+.....+..  ......
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            8743221011111           1123456788888   344332        333332  2433333322  334445


Q ss_pred             EEEEcCCCCEEEEEe-cCCeEEEEecCCCCcc--ceEEecC----CCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 037288          380 LQSLQLYDQYFLASS-MDGTVKLYDHRLTTRG--AVQSYEG----HVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSIR  451 (513)
Q Consensus       380 ~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~--~~~~~~~----h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~  451 (513)
                       +.|+|+++++.+.. .++.|.++++......  .++.+..    .......-.+.++|||++|+++.. ++.|.+|++.
T Consensus       197 -~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  197 -LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             -EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             -EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence             47889998876554 5888999998621111  2333321    111113345889999999887664 6789999993


Q ss_pred             --CCe--EEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          452 --SGE--LVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       452 --~~~--~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                        +++  .+..+.......+.++++|++.+++.+.
T Consensus       276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred             cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence              344  3334444455689999999965544443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=5.4e-05  Score=76.26  Aligned_cols=172  Identities=12%  Similarity=0.050  Sum_probs=108.0

Q ss_pred             cEEEEEEcCCCCE-EEEEe-C---CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCC--CeEEEEECCCCc
Q 037288          258 TVWTADFCTNPSQ-AVIGT-N---LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRN--GAIVTVDVRKRQ  329 (513)
Q Consensus       258 ~V~~~~~s~~g~~-l~s~s-~---~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~d--g~i~iwd~~~~~  329 (513)
                      .+....|+|||+. ++..+ +   ..|.++|+.+++...+....+.+.+..|+|||+.|+ +.+.+  ..|.++|+..+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            7788999999984 55432 2   238899999998777666666677889999996544 44434  567777887665


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eEEEEecCC
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TVKLYDHRL  406 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~lwd~~~  406 (513)
                      ...    +..+..                                  +.....|+|+|+.|+..+. .+  .|.+.|+. 
T Consensus       269 ~~~----LT~~~~----------------------------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-  309 (419)
T PRK04043        269 LTQ----ITNYPG----------------------------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-  309 (419)
T ss_pred             EEE----cccCCC----------------------------------ccCccEECCCCCEEEEEECCCCCceEEEEECC-
Confidence            322    221111                                  0011358899987776653 33  46666764 


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---------CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---------g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                        .+....+.....  ..  ..|+|||++|+..+..         ..|.+.|+.+++. ..+... .......|+|++.
T Consensus       310 --~g~~~rlt~~g~--~~--~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~  380 (419)
T PRK04043        310 --SGSVEQVVFHGK--NN--SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGG  380 (419)
T ss_pred             --CCCeEeCccCCC--cC--ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCC
Confidence              333322321111  12  4789999988766543         3688889888865 334332 2334689999964

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.53  E-value=1.1e-06  Score=81.13  Aligned_cols=171  Identities=12%  Similarity=0.139  Sum_probs=106.4

Q ss_pred             CcEEEEEEcCCCC---EEEEEeCCeEEEEECCCCc-----------------------------------EEEEee--eC
Q 037288          257 CTVWTADFCTNPS---QAVIGTNLGAAMVDMETGM-----------------------------------ASWVCR--SK  296 (513)
Q Consensus       257 ~~V~~~~~s~~g~---~l~s~s~~~i~vwd~~~~~-----------------------------------~~~~~~--~~  296 (513)
                      ..|+.+.|.+++.   +|+++.|.+|++|-+....                                   +.+.+.  |.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            5788999998765   6667788889999764321                                   111122  44


Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS  376 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~  376 (513)
                      --|.++.++.|+..++++ .|=.|.+|.+.-......+.-+..+                            ..-....-
T Consensus       165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~----------------------------nmEeLteV  215 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPA----------------------------NMEELTEV  215 (433)
T ss_pred             eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEcccc----------------------------CHHHHHHH
Confidence            568999999999988887 5889999988644321101011111                            00001111


Q ss_pred             ceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCcc-c---eEEecCC------------CCceeEEEEEEcCCCCEEEEE
Q 037288          377 ISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRG-A---VQSYEGH------------VNSHTRIQLGVDQSERFVMSG  439 (513)
Q Consensus       377 v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~-~---~~~~~~h------------~~~v~~~~~~~s~~g~~l~sg  439 (513)
                      |++ ..|+| .-+.|+.++..|+|++.|+|  +.. |   .+.|+..            ...|.  ++.|+.+|+++++-
T Consensus       216 ITs-aEFhp~~cn~f~YSSSKGtIrLcDmR--~~aLCd~hsKlfEepedp~~rsffseiIsSIS--DvKFs~sGryilsR  290 (433)
T KOG1354|consen  216 ITS-AEFHPHHCNVFVYSSSKGTIRLCDMR--QSALCDAHSKLFEEPEDPSSRSFFSEIISSIS--DVKFSHSGRYILSR  290 (433)
T ss_pred             Hhh-hccCHhHccEEEEecCCCcEEEeech--hhhhhcchhhhhccccCCcchhhHHHHhhhhh--ceEEccCCcEEEEe
Confidence            222 23443 45788889999999999998  322 1   1112111            12333  37899999999976


Q ss_pred             eCCCcEEEEeC-CCCeEEEEecCC
Q 037288          440 GEDCKLRIWSI-RSGELVFEDKFS  462 (513)
Q Consensus       440 ~~Dg~v~vwd~-~~~~~~~~~~~~  462 (513)
                      .. -+|++||+ ...+++.++..|
T Consensus       291 Dy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  291 DY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             cc-ceeEEEeccccCCcceEEeeh
Confidence            54 57999999 556777776655

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.53  E-value=1.6e-05  Score=76.57  Aligned_cols=163  Identities=7%  Similarity=0.039  Sum_probs=120.3

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC-eEEEEECCCCccccccccccccCcCeE
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG-AIVTVDVRKRQRGCSSRAGRRHRIPYS  345 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~  345 (513)
                      +|.+++..+.+.+.|.+...+-.+. +.+...|.-..+..+++-++.|..|| .+-|+|.++++    ++.+...-+.|.
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEeeCCccceE
Confidence            7899999999998887776554443 55777798888888888899999999 99999999886    234444444444


Q ss_pred             EEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC-CCCceeE
Q 037288          346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG-HVNSHTR  424 (513)
Q Consensus       346 ~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~-h~~~v~~  424 (513)
                      +                                  +..+++|++++++.....+.++|+.   ++.++.+.. ..+.+  
T Consensus       406 a----------------------------------v~vs~dGK~~vvaNdr~el~vidid---ngnv~~idkS~~~lI--  446 (668)
T COG4946         406 A----------------------------------VKVSPDGKKVVVANDRFELWVIDID---NGNVRLIDKSEYGLI--  446 (668)
T ss_pred             E----------------------------------EEEcCCCcEEEEEcCceEEEEEEec---CCCeeEeccccccee--
Confidence            4                                  4678899999999999999999995   555555542 23344  


Q ss_pred             EEEEEcCCCCEEEEEeCCC----cEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          425 IQLGVDQSERFVMSGGEDC----KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       425 ~~~~~s~~g~~l~sg~~Dg----~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      ..++|+|+++|+|-+--+|    .|+++|+.+++....... .+--.+-+|.|+
T Consensus       447 tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d  499 (668)
T COG4946         447 TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPD  499 (668)
T ss_pred             EEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCC
Confidence            4499999999999876655    689999999887665322 222345567777

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.52  E-value=2.1e-06  Score=76.39  Aligned_cols=94  Identities=13%  Similarity=0.084  Sum_probs=70.2

Q ss_pred             CeEEEEECCCCcEEEE-eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEE
Q 037288          277 LGAAMVDMETGMASWV-CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT  354 (513)
Q Consensus       277 ~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  354 (513)
                      +..++|+++....... ......|.+++-+|.. +++++|+.||.+-+||.|+... + +..+..|+.+++.+.|+|   
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-p-~S~l~ahk~~i~eV~FHp---  233 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-P-VSLLKAHKAEIWEVHFHP---  233 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-h-HHHHHHhhhhhhheeccC---
Confidence            4456677654332211 1123349999999854 7899999999999999998843 3 667899999999988876   


Q ss_pred             EeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       355 s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                                                    .++..|.+++.||.+-.||..
T Consensus       234 ------------------------------k~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  234 ------------------------------KNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ------------------------------CCchheeEecCCCcEEEEcCC
Confidence                                          467788889999999999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.50  E-value=0.00011  Score=71.25  Aligned_cols=212  Identities=8%  Similarity=0.024  Sum_probs=123.4

Q ss_pred             EcCCCCEEEEEe-----------CCeEEEEECCCCcEEEEeeeCCC--------eEEEEEecCCcEEEEEe-C-CCeEEE
Q 037288          264 FCTNPSQAVIGT-----------NLGAAMVDMETGMASWVCRSKSD--------ILAQQVIHSGNVVLCGF-R-NGAIVT  322 (513)
Q Consensus       264 ~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~~~~~~~--------V~~l~~~~~~~~l~sg~-~-dg~i~i  322 (513)
                      ++|||+.+..+.           ++.|.+||+.+.+.+..+.....        ...++++|||++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            899999777553           35699999999998877764322        34788999999888775 3 699999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCC-eEE----EeEeec----ccCc-ccceeEeecC--CCceEEEEEcC-CCCE
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRND-RVT----NEQWFE----LKAN-IWPSHTTFMP--SSISCLQSLQL-YDQY  389 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~----s~~w~~----~~~~-~~~~~~~~~~--~~v~~~~~~~~-~~~~  389 (513)
                      .|+.+++...   .+.-.. ...-...++ .+.    .|++..    ..++ ......+.+.  ..+-.--.+.+ ++.+
T Consensus       133 vD~~~~kvv~---ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~  208 (352)
T TIGR02658       133 VDLEGKAFVR---MMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL  208 (352)
T ss_pred             EECCCCcEEE---EEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence            9999887643   222111 111111111 000    011100    0000 0001111111  00000001233 7777


Q ss_pred             EEEEecCCeEEEEecCCCCcc---ceEEecC-------CCCceeEEEEEEcCCCCEEEEEeC----------CCcEEEEe
Q 037288          390 FLASSMDGTVKLYDHRLTTRG---AVQSYEG-------HVNSHTRIQLGVDQSERFVMSGGE----------DCKLRIWS  449 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~---~~~~~~~-------h~~~v~~~~~~~s~~g~~l~sg~~----------Dg~v~vwd  449 (513)
                      +.+... |.|.+.|+......   ....+..       ..+....  ++++++++.++....          .+.|.++|
T Consensus       209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            766665 99999996421111   2222211       1222223  889999998887431          25799999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCCC--ceEEeeCC
Q 037288          450 IRSGELVFEDKFSNSVPSAVCWRTQR--SMGPQIEG  483 (513)
Q Consensus       450 ~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~~t~~~  483 (513)
                      ..+++.+..+.. +..+..++++|++  .++++.+.
T Consensus       286 ~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~  320 (352)
T TIGR02658       286 AKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG  320 (352)
T ss_pred             CCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence            999999999875 4578999999994  45556643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.49  E-value=2.8e-05  Score=69.63  Aligned_cols=176  Identities=7%  Similarity=-0.030  Sum_probs=109.3

Q ss_pred             EEEEEeCCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288          270 QAVIGTNLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ  348 (513)
Q Consensus       270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  348 (513)
                      .+.+.-|.++++.+++-+......... -.+.++.+++|+.++++.+....|..|.+....... ++...          
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-~~~~~----------  199 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-ENIYE----------  199 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-eeeEe----------
Confidence            333444556888877654432222211 238899999999999999999999999987654322 11000          


Q ss_pred             eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE----EecCCCCceeE
Q 037288          349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ----SYEGHVNSHTR  424 (513)
Q Consensus       349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~----~~~~h~~~v~~  424 (513)
                                            ....+..-+ ..|+.....||+++.||++.|||+|.... +..    +-..|.+.+..
T Consensus       200 ----------------------a~t~D~gF~-~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t-pm~~~sstrp~hnGa~R~  255 (344)
T KOG4532|consen  200 ----------------------APTSDHGFY-NSFSENDLQFAVVFQDGTCAIYDVRNMAT-PMAEISSTRPHHNGAFRV  255 (344)
T ss_pred             ----------------------cccCCCcee-eeeccCcceEEEEecCCcEEEEEeccccc-chhhhcccCCCCCCceEE
Confidence                                  000111111 36777888999999999999999994322 222    22347777766


Q ss_pred             EEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEEEEecCC--------CCCeEEEEEcCC-CceEEeeC
Q 037288          425 IQLGVDQSE--RFVMSGGEDCKLRIWSIRSGELVFEDKFS--------NSVPSAVCWRTQ-RSMGPQIE  482 (513)
Q Consensus       425 ~~~~~s~~g--~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~--------~~~v~~v~~~p~-~~~~~t~~  482 (513)
                        +.|++-|  .+|+-.-.-+.+.+-|++++...+.+...        ...+..-+|+.+ ...++..+
T Consensus       256 --c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  256 --CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             --EEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence              7788755  34555555678999999998766553222        223666666655 33444433

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.47  E-value=6.7e-05  Score=82.49  Aligned_cols=212  Identities=13%  Similarity=0.113  Sum_probs=128.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEe-CCeEEEE----ECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcc
Q 037288          256 KCTVWTADFCTNPSQAVIGT-NLGAAMV----DMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQR  330 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s-~~~i~vw----d~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~  330 (513)
                      ...|.++.+.++...++.+. +|-|.+.    |..+......-.-...|.+++|+||+.+|+..+.++++.+.+.. ...
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceE
Confidence            36899999999888777664 4557777    55555444434467889999999999999999999999887532 222


Q ss_pred             ccccccccccCcCeEEEeeCC-eEEEeEeecccCccc-------------ce------eEeecCCCceEEEEEcCCCCEE
Q 037288          331 GCSSRAGRRHRIPYSRLQRND-RVTNEQWFELKANIW-------------PS------HTTFMPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~-~~~s~~w~~~~~~~~-------------~~------~~~~~~~~v~~~~~~~~~~~~l  390 (513)
                      ..   ...     +..-+|.. ..++.+|-..+.+..             +.      ..+...+.- ...+|..||.+|
T Consensus       154 i~---E~~-----l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~-~~ISWRGDG~yF  224 (928)
T PF04762_consen  154 IS---EVP-----LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR-VRISWRGDGEYF  224 (928)
T ss_pred             EE---Eee-----cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc-eEEEECCCCcEE
Confidence            11   111     01111111 334444443332211             11      011122222 335788999999


Q ss_pred             EEEec---C---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEec-
Q 037288          391 LASSM---D---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFEDK-  460 (513)
Q Consensus       391 ~s~s~---d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~~-  460 (513)
                      |+.+.   +   ..+++|+-   + +.+..-....... .-.++|-|.|++||+...   .-.|.+|. ++|-....|. 
T Consensus       225 AVss~~~~~~~~R~iRVy~R---e-G~L~stSE~v~gL-e~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l  298 (928)
T PF04762_consen  225 AVSSVEPETGSRRVIRVYSR---E-GELQSTSEPVDGL-EGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTL  298 (928)
T ss_pred             EEEEEEcCCCceeEEEEECC---C-ceEEeccccCCCc-cCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEec
Confidence            99885   3   46889984   2 3232222111111 123899999999988765   34577777 5665555443 


Q ss_pred             ---CCCCCeEEEEEcCCCceEEeeCC
Q 037288          461 ---FSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       461 ---~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                         .....|..++|++++.+||-.-.
T Consensus       299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~  324 (928)
T PF04762_consen  299 RFDPEEEKVIELAWNSDSEILAVWLE  324 (928)
T ss_pred             CCCCCCceeeEEEECCCCCEEEEEec
Confidence               34567999999999877666544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=7.1e-06  Score=82.57  Aligned_cols=223  Identities=13%  Similarity=0.081  Sum_probs=132.0

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCC-
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKS-  297 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~-  297 (513)
                      .+++|-+-+|-++...=.       ..   ..-......|.+++|+.+|..++....++ |.+=.++ |..++-..-++ 
T Consensus        89 SDt~GlIiVWmlykgsW~-------EE---MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~  157 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWC-------EE---MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQ  157 (1189)
T ss_pred             cCCCceEEEEeeecccHH-------HH---HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchh
Confidence            456777777777643211       00   00122346789999999999998876554 5554444 33333222222 


Q ss_pred             CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEE-eeCC---eEEEeEeecccCcccceeEeec
Q 037288          298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL-QRND---RVTNEQWFELKANIWPSHTTFM  373 (513)
Q Consensus       298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v-~~~~---~~~s~~w~~~~~~~~~~~~~~~  373 (513)
                      ....+.|++|...++.+-.+|.+.++|....-...    +.- ...|+.- .|+.   ++..-.|....           
T Consensus       158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~K----l~~-~c~Vn~tg~~s~~~~kia~i~w~~g~-----------  221 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERK----LEK-DCEVNGTGIFSNFPTKIAEIEWNTGP-----------  221 (1189)
T ss_pred             eccceeecccHHHHHhhhcCCcEEEecccccHHHh----hhh-ceEEeeeeeecCCCccccceeeccCc-----------
Confidence            24578899999988888889999999976432111    000 0001000 0000   11111111110           


Q ss_pred             CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---------c
Q 037288          374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---------K  444 (513)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---------~  444 (513)
                         .   .-..|+-..|+++-.+|.+.|..-.. +..++..-.+    ...+...|+++|..|+.+|.|.         .
T Consensus       222 ---~---~~v~pdrP~lavcy~nGr~QiMR~eN-D~~Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~  290 (1189)
T KOG2041|consen  222 ---Y---QPVPPDRPRLAVCYANGRMQIMRSEN-DPEPVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK  290 (1189)
T ss_pred             ---c---ccCCCCCCEEEEEEcCceehhhhhcC-CCCCeEEecc----cEeecceecCCCcEEEEccCcccccCccccce
Confidence               0   12356888999999999998865421 1224332222    2234478999999999988642         5


Q ss_pred             EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      |.++. .-|+.+.+++..+..|++++|-..+.-+|-.
T Consensus       291 v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  291 VHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             EEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence            66666 4678888999989999999999886544433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.5e-05  Score=75.34  Aligned_cols=219  Identities=12%  Similarity=0.053  Sum_probs=126.1

Q ss_pred             EEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECC
Q 037288          250 HLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~  326 (513)
                      +.+.+|...|.+++|+|..+ ++..++ +..|+|.|+++...+..+.....+++++|.-|. ++|++|..+|.|.|||++
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            34778889999999999777 555665 556999999999888888777899999999876 899999999999999999


Q ss_pred             CCccccccccccc--cCcCeEEEeeCC--------eEEEeE------eecccCcccceeEeec--CCCceEEEEEcCCCC
Q 037288          327 KRQRGCSSRAGRR--HRIPYSRLQRND--------RVTNEQ------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQ  388 (513)
Q Consensus       327 ~~~~~~~~~~~~~--h~~~v~~v~~~~--------~~~s~~------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~  388 (513)
                      ..+..  +..+.+  ...+|..++.-+        -++++.      |........+......  ++...++ ...+..+
T Consensus       267 ~~~~~--~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism-qy~~~sn  343 (463)
T KOG1645|consen  267 QPEGP--LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM-QYHGVSN  343 (463)
T ss_pred             CCCch--HhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee-eecCccc
Confidence            87653  223333  344555544432        333333      6654433222222222  2222232 2222222


Q ss_pred             -EEEEEecCC------eEEE-EecCCCCccceE-EecCCCCc----eeEEEEEE-cCCCCEEE-EEeCCCcEEEEeCCCC
Q 037288          389 -YFLASSMDG------TVKL-YDHRLTTRGAVQ-SYEGHVNS----HTRIQLGV-DQSERFVM-SGGEDCKLRIWSIRSG  453 (513)
Q Consensus       389 -~l~s~s~dg------~i~l-wd~~~~~~~~~~-~~~~h~~~----v~~~~~~~-s~~g~~l~-sg~~Dg~v~vwd~~~~  453 (513)
                       .|++.-.+.      .|-. -|.+  ...++. .-.+|.+.    ......-+ .++.++|+ .|..-+.+.+||..+.
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~--dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFR--DGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccc--cCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence             222222110      0000 0110  111111 01111110    00001112 24455554 4555678999999999


Q ss_pred             eEEEEecCCCCCeEEEEEcCC
Q 037288          454 ELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       454 ~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      +.++++... .+|..++...-
T Consensus       422 evvQ~l~~~-epv~Dicp~~~  441 (463)
T KOG1645|consen  422 EVVQTLALS-EPVLDICPNDT  441 (463)
T ss_pred             heeeecccC-cceeecceeec
Confidence            999998764 67888776644

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.42  E-value=1.1e-06  Score=78.19  Aligned_cols=139  Identities=17%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCcccccccccc-ccCcCeEEEeeCC---eEEEeE---eecccCc----ccceeEe----
Q 037288          307 SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR-RHRIPYSRLQRND---RVTNEQ---WFELKAN----IWPSHTT----  371 (513)
Q Consensus       307 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~---~~~s~~---w~~~~~~----~~~~~~~----  371 (513)
                      .++-++++..||.+.+++.+......  .... .|.+. .+.....   .+.++.   |......    ..+..++    
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhh--hhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence            46779999999999999987632111  1111 11111 1111111   233332   3322211    1111111    


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 037288          372 FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       372 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd  449 (513)
                      .....+.++...+.+.+.+++|+.||.+-+||.|  ... +...+..|..++.-  +.|+| ++..|+++++||.+.-||
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~r--n~~~p~S~l~ahk~~i~e--V~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDAR--NVAMPVSLLKAHKAEIWE--VHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcc--cccchHHHHHHhhhhhhh--eeccCCCchheeEecCCCcEEEEc
Confidence            1223466665555567788889999999999998  433 67778899998877  89998 467899999999999999


Q ss_pred             CCC
Q 037288          450 IRS  452 (513)
Q Consensus       450 ~~~  452 (513)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.41  E-value=1.2e-06  Score=88.35  Aligned_cols=213  Identities=13%  Similarity=0.083  Sum_probs=141.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCC-cEEEEeeeCC--CeEEEEEecCC--cEEEEEeCCCeEEEEECCCCccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETG-MASWVCRSKS--DILAQQVIHSG--NVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~-~~~~~~~~~~--~V~~l~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      +.+.++.++|.|+-+|.++.-++.+.|+... .+-+.+.|-.  .|-.++|+|..  .+-++......-.+|++......
T Consensus        25 ~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~  104 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN  104 (1081)
T ss_pred             CcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence            5788999999999999998888888888754 3333344333  38888999865  34455556677788998765543


Q ss_pred             cccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          332 CSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      ..-..+-+|..+|+.+.|++    .+.+++       |+.+..+........-......+.+.-.+++ +++.+....|.
T Consensus       105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~  183 (1081)
T KOG0309|consen  105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIF  183 (1081)
T ss_pred             ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-hhhhccCCceE
Confidence            32236789999999999998    333443       8888766432222222333444433333444 44556677899


Q ss_pred             EEecCCCCcc-ceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCC
Q 037288          401 LYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       401 lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~  474 (513)
                      +||+|  ... ++..+++|...+..  ++|.. ....+++.+.||+|++||......... ....+.+|..-++-|-
T Consensus       184 vwd~r--~gs~pl~s~K~~vs~vn~--~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf  256 (1081)
T KOG0309|consen  184 VWDLR--KGSTPLCSLKGHVSSVNS--IDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF  256 (1081)
T ss_pred             EEecc--CCCcceEEecccceeeeh--HHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence            99998  444 88899999888777  55543 234688999999999999865432111 1223556666666665

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=6.5e-07  Score=82.56  Aligned_cols=127  Identities=13%  Similarity=0.103  Sum_probs=95.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCC-----cEEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCC
Q 037288          255 FKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETG-----MASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~-----~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ....|.++.|...+.++..|.. +.|.+.|++.+     .+...+-|.+.|++++.-. +++.|++.+.+|+|++||+|.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            4568899999988888888765 55999999865     3566667999999998776 788999999999999999998


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      -+....+..+.+|...-.-+.                                .-..+....+++++.|...+||.++  
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~--------------------------------~~v~~eeg~I~s~GdDcytRiWsl~--  376 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLP--------------------------------AHVKEEEGSIFSVGDDCYTRIWSLD--  376 (425)
T ss_pred             hhcccceeeeecccccccccc--------------------------------cccccccceEEEccCeeEEEEEecc--
Confidence            776444567777733221111                                2345667788889999999999997  


Q ss_pred             CccceEEe
Q 037288          408 TRGAVQSY  415 (513)
Q Consensus       408 ~~~~~~~~  415 (513)
                      ....+.++
T Consensus       377 ~ghLl~ti  384 (425)
T KOG2695|consen  377 SGHLLCTI  384 (425)
T ss_pred             cCceeecc
Confidence            44444444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.37  E-value=1.3e-06  Score=55.74  Aligned_cols=37  Identities=27%  Similarity=0.647  Sum_probs=34.8

Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      ++.++.+|.+.|.+  ++|+|++.+|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~--i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINS--IAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEE--EEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEE--EEEecccccceeeCCCCEEEEEC
Confidence            67889999999988  89999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.33  E-value=0.00018  Score=65.55  Aligned_cols=194  Identities=10%  Similarity=0.003  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee--------eCCCeEEEEEecCC------cEEEEEeCCCeEEEEE
Q 037288          260 WTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR--------SKSDILAQQVIHSG------NVVLCGFRNGAIVTVD  324 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~--------~~~~V~~l~~~~~~------~~l~sg~~dg~i~iwd  324 (513)
                      ..++||||+.+||.+ +.++|+++|+..... ..+.        -...|..+.|-+..      ..|++-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            578999999999977 667799999985432 2222        12346777776422      2566667888888887


Q ss_pred             CCCCcc-----ccccccccc-cCcCeEEEeeCC---eEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          325 VRKRQR-----GCSSRAGRR-HRIPYSRLQRND---RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       325 ~~~~~~-----~~~~~~~~~-h~~~v~~v~~~~---~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      +..+..     .. ...+.. +...|.++.++|   .++.|++........    .....++++-+.++....+..+.+.
T Consensus       126 vs~gt~q~y~e~h-sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s----~a~~~GLtaWRiL~~~Pyyk~v~~~  200 (282)
T PF15492_consen  126 VSVGTNQGYQENH-SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS----KASSCGLTAWRILSDSPYYKQVTSS  200 (282)
T ss_pred             EEcccCCcceeeE-EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc----cccccCceEEEEcCCCCcEEEcccc
Confidence            643211     11 112223 366889999988   455555443322110    0112233443444444444433333


Q ss_pred             CCeEE-------EEecCCCCccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC
Q 037288          396 DGTVK-------LYDHRLTTRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       396 dg~i~-------lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~  464 (513)
                      +..+.       +|.+-  .. .+....+ ..+.|  ..+..||||..|++...+|.|.+|++.+-.+......++.
T Consensus       201 ~~~~~~~~~~~~~~~~~--~~-~~fs~~~~~~d~i--~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  201 EDDITASSKRRGLLRIP--SF-KFFSRQGQEQDGI--FKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             Cccccccccccceeecc--ce-eeeeccccCCCce--EEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            22221       22211  10 1111111 23344  4588999999999999999999999999888877655443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.0002  Score=72.27  Aligned_cols=154  Identities=11%  Similarity=0.048  Sum_probs=93.4

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe--C--CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC--eEEEEECCC
Q 037288          255 FKCTVWTADFCTNPSQAVIGT--N--LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG--AIVTVDVRK  327 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s--~--~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg--~i~iwd~~~  327 (513)
                      ..+.+...+|+|||+.++...  +  ..|.++|+.++....+..+........|+|||+.|+-.+ ..+  .|.+.|+..
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            445566788999999777543  2  248888998887666555444345668999996554443 333  577777776


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---------Ce
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---------GT  398 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---------g~  398 (513)
                      ++...    +...                                  +. .. ..++|+|++++..+..         ..
T Consensus       311 g~~~r----lt~~----------------------------------g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~  350 (419)
T PRK04043        311 GSVEQ----VVFH----------------------------------GK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFN  350 (419)
T ss_pred             CCeEe----CccC----------------------------------CC-cC-ceECCCCCEEEEEEcCCCcccCCCCcE
Confidence            55321    1000                                  00 00 2578899988876654         26


Q ss_pred             EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCe
Q 037288          399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-C--KLRIWSIRSGE  454 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-g--~v~vwd~~~~~  454 (513)
                      |.+.|+.   .+....+.... ...  ...|+|||+.|+....+ +  .+.+.++....
T Consensus       351 I~v~d~~---~g~~~~LT~~~-~~~--~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        351 LYLISTN---SDYIRRLTANG-VNQ--FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             EEEEECC---CCCeEECCCCC-CcC--CeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence            7777874   33344454332 111  26899999988765543 2  36666765543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.31  E-value=0.00023  Score=68.84  Aligned_cols=186  Identities=13%  Similarity=0.113  Sum_probs=128.1

Q ss_pred             eccccC--cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEe-e------eCCC--eE---EE-EEec-CCcEEEEEe
Q 037288          252 VASFKC--TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVC-R------SKSD--IL---AQ-QVIH-SGNVVLCGF  315 (513)
Q Consensus       252 ~~~h~~--~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~-~------~~~~--V~---~l-~~~~-~~~~l~sg~  315 (513)
                      +..|++  .-++-..+.||+.++....+.|.++|.++.....+- .      .+.+  +.   -+ .|++ +|.+++..+
T Consensus       260 lrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS  339 (668)
T COG4946         260 LRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS  339 (668)
T ss_pred             hhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe
Confidence            344443  334555677999999887788999998877543321 1      0111  11   11 1343 678888776


Q ss_pred             CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      + |...+.+...+-.++     .+|.+.|.-                                  ..+..+++-++.|..
T Consensus       340 R-GkaFi~~~~~~~~iq-----v~~~~~VrY----------------------------------~r~~~~~e~~vigt~  379 (668)
T COG4946         340 R-GKAFIMRPWDGYSIQ-----VGKKGGVRY----------------------------------RRIQVDPEGDVIGTN  379 (668)
T ss_pred             c-CcEEEECCCCCeeEE-----cCCCCceEE----------------------------------EEEccCCcceEEecc
Confidence            4 778887766553221     223333322                                  234446668899999


Q ss_pred             CC-eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          396 DG-TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       396 dg-~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      || .+-++|.+   ...++.+...-+.+..  +..+++|++++.+.....+.+.|+.+|.....-+...+.|+.+.|+|+
T Consensus       380 dgD~l~iyd~~---~~e~kr~e~~lg~I~a--v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n  454 (668)
T COG4946         380 DGDKLGIYDKD---GGEVKRIEKDLGNIEA--VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN  454 (668)
T ss_pred             CCceEEEEecC---CceEEEeeCCccceEE--EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence            98 89999985   5567778777777766  888999999999999999999999999977666666788999999999


Q ss_pred             CceEEeeC
Q 037288          475 RSMGPQIE  482 (513)
Q Consensus       475 ~~~~~t~~  482 (513)
                      ..++|-+-
T Consensus       455 sr~iAYaf  462 (668)
T COG4946         455 SRWIAYAF  462 (668)
T ss_pred             ceeEEEec
Confidence            87776553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.29  E-value=3e-06  Score=53.98  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=31.8

Q ss_pred             EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          289 ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       289 ~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      ++..+. |.+.|.+++|+|++++|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            444454 778899999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.26  E-value=0.00041  Score=69.49  Aligned_cols=168  Identities=17%  Similarity=0.170  Sum_probs=98.9

Q ss_pred             EEEEE-eCCeEEEEECCCCcEEEEeeeCCC-----e---EEEEEec--CCcEEEEEeCCCeEEEEECCCCcccccccccc
Q 037288          270 QAVIG-TNLGAAMVDMETGMASWVCRSKSD-----I---LAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR  338 (513)
Q Consensus       270 ~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~-----V---~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  338 (513)
                      .++.+ .++.+..+|..+|+.++.......     +   ..+.-+|  .+..++.++.+|.+..+|..+++...   ...
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W---~~~  268 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW---KRD  268 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE---eec
Confidence            44444 456799999999988775432110     0   0010011  34577788899999999998876432   000


Q ss_pred             ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCC
Q 037288          339 RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH  418 (513)
Q Consensus       339 ~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h  418 (513)
                                                        ... ..   .....+..+++++.||.+..+|..  ....+-.+...
T Consensus       269 ----------------------------------~~~-~~---~p~~~~~~vyv~~~~G~l~~~d~~--tG~~~W~~~~~  308 (377)
T TIGR03300       269 ----------------------------------ASS-YQ---GPAVDDNRLYVTDADGVVVALDRR--SGSELWKNDEL  308 (377)
T ss_pred             ----------------------------------cCC-cc---CceEeCCEEEEECCCCeEEEEECC--CCcEEEccccc
Confidence                                              000 00   011135677778889999999985  33344333211


Q ss_pred             CCc-eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCCCceEEeeCCC
Q 037288          419 VNS-HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       419 ~~~-v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~~t~~~~  484 (513)
                      ... ...  ..+  .+..|++++.||.|+++|..+|+.+..+..+... ....++..+..++++.++.
T Consensus       309 ~~~~~ss--p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~  372 (377)
T TIGR03300       309 KYRQLTA--PAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGD  372 (377)
T ss_pred             cCCcccc--CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCce
Confidence            111 111  111  3678999999999999999999999988765543 2333444445555555444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=3.4e-06  Score=82.32  Aligned_cols=199  Identities=14%  Similarity=0.169  Sum_probs=129.9

Q ss_pred             ccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee---e
Q 037288          219 SETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR---S  295 (513)
Q Consensus       219 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~---~  295 (513)
                      ++..+..+.+|++......     .....+..+++.|+.+|.++.|-.+.++++++ |++|.+||.--++.+....   .
T Consensus       752 SASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~dapk  825 (1034)
T KOG4190|consen  752 SASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDAPK  825 (1034)
T ss_pred             eccCCceEEEEEeccccCc-----cccceeeeEhhhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcCcc
Confidence            3456667777777633222     11122678899999999999999988888665 7789999988777554322   2


Q ss_pred             CCCeEEEEEec--CCcEEEEE-eCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288          296 KSDILAQQVIH--SGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF  372 (513)
Q Consensus       296 ~~~V~~l~~~~--~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~  372 (513)
                      ++.+..+.--+  +..++++| +...+|+++|.|..+....++..                                ...
T Consensus       826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc--------------------------------na~  873 (1034)
T KOG4190|consen  826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC--------------------------------NAP  873 (1034)
T ss_pred             cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec--------------------------------cCC
Confidence            23333333323  45555555 77899999999988764411111                                111


Q ss_pred             cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEE-EeCC
Q 037288          373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI-WSIR  451 (513)
Q Consensus       373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~v-wd~~  451 (513)
                      .+...+......+.|+.++++-.+|+|.+.|.|  ....+..+..-.-..  +.++ .|.+..|+....|.++.+ |...
T Consensus       874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR--~G~vINswrpmecdl--lqla-apsdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  874 GPNALTRAIAVADKGNKLAAALSNGCIAILDAR--NGKVINSWRPMECDL--LQLA-APSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             CCchheeEEEeccCcchhhHHhcCCcEEEEecC--CCceeccCCcccchh--hhhc-CchhHHHHhhcccceeEeeehhc
Confidence            222233334667899999999999999999998  544566555333222  2233 467788888888999999 9877


Q ss_pred             CCeEEEEec
Q 037288          452 SGELVFEDK  460 (513)
Q Consensus       452 ~~~~~~~~~  460 (513)
                      +|......+
T Consensus       949 dgimh~q~k  957 (1034)
T KOG4190|consen  949 DGIMHLQDK  957 (1034)
T ss_pred             CCeeeeccC
Confidence            776555543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.24  E-value=9.3e-05  Score=82.92  Aligned_cols=173  Identities=12%  Similarity=0.085  Sum_probs=104.2

Q ss_pred             EEEEEEcC-CCCEEEEE-eCCeEEEEECCCCcEEEEeee---------------CCCeEEEEEecCCc-EEEEEeCCCeE
Q 037288          259 VWTADFCT-NPSQAVIG-TNLGAAMVDMETGMASWVCRS---------------KSDILAQQVIHSGN-VVLCGFRNGAI  320 (513)
Q Consensus       259 V~~~~~s~-~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~---------------~~~V~~l~~~~~~~-~l~sg~~dg~i  320 (513)
                      -+.++++| ++.++++. .++.|++||..++........               -.....++|+|++. ++++-+.++.|
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            36889999 55555554 456699999987764332110               11246799999997 55566678999


Q ss_pred             EEEECCCCccccccccccccCcCeEE---EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIPYSR---LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~v~~---v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      ++||+.++....    +. ...++..   ..|        ++ ..+. .....+.++   .. ++++++|+.+++-+.++
T Consensus       765 rv~D~~tg~~~~----~~-gg~~~~~~~l~~f--------G~-~dG~-g~~~~l~~P---~G-vavd~dG~LYVADs~N~  825 (1057)
T PLN02919        765 RALDLKTGGSRL----LA-GGDPTFSDNLFKF--------GD-HDGV-GSEVLLQHP---LG-VLCAKDGQIYVADSYNH  825 (1057)
T ss_pred             EEEECCCCcEEE----EE-ecccccCcccccc--------cC-CCCc-hhhhhccCC---ce-eeEeCCCcEEEEECCCC
Confidence            999998764211    00 0000000   000        00 0000 000011112   22 36778999888888999


Q ss_pred             eEEEEecCCCCccceEEecCC--------------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 037288          398 TVKLYDHRLTTRGAVQSYEGH--------------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL  455 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h--------------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~  455 (513)
                      .|++||..   .+.+.++.+.              -...  ..++++++|+++++-+.++.|++||+.+++.
T Consensus       826 rIrviD~~---tg~v~tiaG~G~~G~~dG~~~~a~l~~P--~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        826 KIKKLDPA---TKRVTTLAGTGKAGFKDGKALKAQLSEP--AGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEEECC---CCeEEEEeccCCcCCCCCcccccccCCc--eEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999985   3333333221              1122  2378899999989989999999999998865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.21  E-value=6.2e-06  Score=83.29  Aligned_cols=197  Identities=14%  Similarity=0.094  Sum_probs=127.8

Q ss_pred             EEeccccCcEEEEEEcCCC-CEEEEEeCCe-EEEEECCCCc-EEEEee-eCCCeEEEEEec-CCcEEEEEeCCCeEEEEE
Q 037288          250 HLVASFKCTVWTADFCTNP-SQAVIGTNLG-AAMVDMETGM-ASWVCR-SKSDILAQQVIH-SGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g-~~l~s~s~~~-i~vwd~~~~~-~~~~~~-~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd  324 (513)
                      ..+.+|..+|.++.|+|.. ..+++++-++ +..||+++.. ++.... -.+.-..++|+- +++.+++ +....|++||
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd  186 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWD  186 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEe
Confidence            5588999999999999955 4777886555 9999998765 333333 445677889986 4455554 5677899999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCC--CCEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLY--DQYFL  391 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~  391 (513)
                      ++.+.. + +..+++|...|..++|+.    .+++.+       |+..+..-.+.+++.....+..-. +-|-  |.+++
T Consensus       187 ~r~gs~-p-l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r-~~Pfg~g~~~m  263 (1081)
T KOG0309|consen  187 LRKGST-P-LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR-YLPFGEGYCIM  263 (1081)
T ss_pred             ccCCCc-c-eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc-ccccCceeEec
Confidence            998764 2 557888999999999987    455444       777665554555554444333321 2222  22222


Q ss_pred             EEecCCeEEEEecCCC--------CccceEEecCCCCceeEEEEEE--------cCC--CCEEEEEeCCCcEEEEeCCC
Q 037288          392 ASSMDGTVKLYDHRLT--------TRGAVQSYEGHVNSHTRIQLGV--------DQS--ERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~--------s~~--g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      -.-.+..+.+++.+..        ...++.+|.||.+.|..  +-|        +-+  +-.|++=+.|.++++|-+.+
T Consensus       264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e--FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE--FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH--HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            2122224444443311        12389999999987643  322        112  23689999999999998754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.19  E-value=9e-06  Score=76.74  Aligned_cols=97  Identities=14%  Similarity=0.128  Sum_probs=75.3

Q ss_pred             EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc-ccccCcCeEEEeeCCeEEEeE
Q 037288          279 AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA-GRRHRIPYSRLQRNDRVTNEQ  357 (513)
Q Consensus       279 i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~s~~  357 (513)
                      +.+|....+.+..++.|-+.++.++|+||+++|+++.+|..|++-.......   +.. +-||+.-|..++.        
T Consensus       134 ~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~---IesfclGH~eFVS~isl--------  202 (390)
T KOG3914|consen  134 FDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV---IESFCLGHKEFVSTISL--------  202 (390)
T ss_pred             eeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc---hhhhccccHhheeeeee--------
Confidence            7788877788888899999999999999999999999999999977654432   223 3467776666433        


Q ss_pred             eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288          358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY  415 (513)
Q Consensus       358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~  415 (513)
                                                - +++.|++|+.|+++++||++  +...+.++
T Consensus       203 --------------------------~-~~~~LlS~sGD~tlr~Wd~~--sgk~L~t~  231 (390)
T KOG3914|consen  203 --------------------------T-DNYLLLSGSGDKTLRLWDIT--SGKLLDTC  231 (390)
T ss_pred             --------------------------c-cCceeeecCCCCcEEEEecc--cCCccccc
Confidence                                      1 46678999999999999998  44455444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.19  E-value=0.00044  Score=77.65  Aligned_cols=204  Identities=9%  Similarity=0.011  Sum_probs=120.2

Q ss_pred             cEEEEEEcCCCCEEEEE-e-CCeEEEEECCCCcEEEEeee-----------------CCCeEEEEEec-CCcEEEEEeCC
Q 037288          258 TVWTADFCTNPSQAVIG-T-NLGAAMVDMETGMASWVCRS-----------------KSDILAQQVIH-SGNVVLCGFRN  317 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s-~~~i~vwd~~~~~~~~~~~~-----------------~~~V~~l~~~~-~~~~l~sg~~d  317 (513)
                      .-..+++.+++..|.++ . ++.|+++|+.++....+...                 -..-..++|+| ++.++++...+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            45788999888765544 3 35599999987764333210                 01236789999 56677777788


Q ss_pred             CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecC
Q 037288          318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMD  396 (513)
Q Consensus       318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~d  396 (513)
                      +.|++||...+...    .+.+..... .  .            .+.......+   ..... +++++++. ++++-+.+
T Consensus       705 ~~I~v~d~~~g~v~----~~~G~G~~~-~--~------------~g~~~~~~~~---~~P~G-IavspdG~~LYVADs~n  761 (1057)
T PLN02919        705 HQIWEYNISDGVTR----VFSGDGYER-N--L------------NGSSGTSTSF---AQPSG-ISLSPDLKELYIADSES  761 (1057)
T ss_pred             CeEEEEECCCCeEE----EEecCCccc-c--C------------CCCccccccc---cCccE-EEEeCCCCEEEEEECCC
Confidence            99999998766421    111110000 0  0            0000000001   11222 46788887 44555667


Q ss_pred             CeEEEEecCCCCccceE-------------EecCCCC------ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          397 GTVKLYDHRLTTRGAVQ-------------SYEGHVN------SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~-------------~~~~h~~------~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      +.|++||+.  ......             .+-.+.+      ......++++++|..+++-..++.|++||..++....
T Consensus       762 ~~Irv~D~~--tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t  839 (1057)
T PLN02919        762 SSIRALDLK--TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT  839 (1057)
T ss_pred             CeEEEEECC--CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence            999999986  222110             0100000      0011347889999988888999999999998887654


Q ss_pred             EecC-------------CCCCeEEEEEcCCCceEEeeCCCee
Q 037288          458 EDKF-------------SNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       458 ~~~~-------------~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ....             .-.....+++++++.++++...+-.
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            3211             1124788999999888887765544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=8.4e-05  Score=73.08  Aligned_cols=178  Identities=8%  Similarity=0.017  Sum_probs=118.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-----------CCeEEEEECC
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-----------NGAIVTVDVR  326 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-----------dg~i~iwd~~  326 (513)
                      .=+-+.|||-|.||++-...+|.+|--.+-..+..+.| ..|.-+.|||..++|++=+.           ...++|||++
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeeeEEecCCceEEEEEeccceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            34568999999999999989999997666555554544 45888999999999988753           2578999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ++....   .+...                               +.+...-.+..||.|++++|--..| .|.||+.. 
T Consensus       291 tG~lkr---sF~~~-------------------------------~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp-  334 (698)
T KOG2314|consen  291 TGLLKR---SFPVI-------------------------------KSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP-  334 (698)
T ss_pred             ccchhc---ceecc-------------------------------CCCccccceEEeccCCceeEEeccc-eEEEEecC-
Confidence            987643   22221                               1122223345688899999977764 79999864 


Q ss_pred             CCccceEEecCC---CCceeEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288          407 TTRGAVQSYEGH---VNSHTRIQLGVDQSERFVMSGGE-----DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       407 ~~~~~~~~~~~h---~~~v~~~~~~~s~~g~~l~sg~~-----Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                       +   ...+.+.   ...|..  +.|+|.+..||-=..     -..+.+-.+.+++.+++.+.+.-.-..+-|-.++.+|
T Consensus       335 -s---f~lld~Kslki~gIr~--FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  335 -S---FMLLDKKSLKISGIRD--FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             -c---eeeecccccCCccccC--cccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence             2   2222222   222333  889999888874322     2457788888888777755544333455666554443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=0.00038  Score=68.65  Aligned_cols=220  Identities=12%  Similarity=0.051  Sum_probs=129.0

Q ss_pred             cEEEEEEcCCCCEEEEEe-----------C-CeEEEEECCCCcEEEEeee---CCCe-EEEEEecCCcEEEEEeCCCeEE
Q 037288          258 TVWTADFCTNPSQAVIGT-----------N-LGAAMVDMETGMASWVCRS---KSDI-LAQQVIHSGNVVLCGFRNGAIV  321 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s-----------~-~~i~vwd~~~~~~~~~~~~---~~~V-~~l~~~~~~~~l~sg~~dg~i~  321 (513)
                      .|.-++|||+.+||++=+           + ..++|||+.+|...+.+..   ...+ .-+.||.|++++|.-.. ..|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            688899999999999754           1 3499999999987766653   2223 34579999999988766 4688


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC--eEEE----------------------------------eE--eecccC
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTN----------------------------------EQ--WFELKA  363 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s----------------------------------~~--w~~~~~  363 (513)
                      ||+.......-   .-.-.-..|....|+|  .+++                                  +.  |.....
T Consensus       330 IyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd  406 (698)
T KOG2314|consen  330 IYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD  406 (698)
T ss_pred             EEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence            88765422110   0000112233333333  0000                                  00  332211


Q ss_pred             cc----------------------------cceeEeecCCCceEEEEEcCCCCEEEEEec---CCeEEEEecCCCCcc--
Q 037288          364 NI----------------------------WPSHTTFMPSSISCLQSLQLYDQYFLASSM---DGTVKLYDHRLTTRG--  410 (513)
Q Consensus       364 ~~----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~lwd~~~~~~~--  410 (513)
                      .+                            .|.....+...+... .|.|.|+.|++-+.   ..++.+|-+......  
T Consensus       407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~F-aWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~  485 (698)
T KOG2314|consen  407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAF-AWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS  485 (698)
T ss_pred             EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeee-eeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence            10                            011111122233332 57788888876543   356888887521111  


Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .+..+..    ..+-.+.|+|.|++++.+.   ..|.+.++|+....+..+-.......+.+.|.|.+.+++|++.-..
T Consensus       486 lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  486 LVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             hhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence            4444432    2233488999999988754   5789999999853333332222234788999999999999887765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.12  E-value=0.00016  Score=70.59  Aligned_cols=172  Identities=10%  Similarity=0.169  Sum_probs=113.0

Q ss_pred             EEEEEcCCCCEEEEE------e------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE--EEeCCCeEEEEEC
Q 037288          260 WTADFCTNPSQAVIG------T------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL--CGFRNGAIVTVDV  325 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~------s------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~--sg~~dg~i~iwd~  325 (513)
                      ..+.|++.|.+++.-      +      +..+.|+++....+.-.....++|....|.|.++.++  +|-.+..+.++|+
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence            467888888866532      1      2347788887443332235678899999999886544  4457889999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEE
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLY  402 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lw  402 (513)
                      +..-.                                        ...+..-.....|+|.+++++.++.|   |.|-+|
T Consensus       306 r~Nl~----------------------------------------~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~  345 (561)
T COG5354         306 RGNLR----------------------------------------FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF  345 (561)
T ss_pred             ccceE----------------------------------------EecCCcccccccccCcccEEEEecCCccccceEEe
Confidence            86521                                        11122222225788999999998765   679999


Q ss_pred             ecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288          403 DHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGG------EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       403 d~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~------~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                      |..  .+- ++..+.+....  .  +.|+||+.++.+..      .|..|.|||+...+..        ..+.+.|.|.+
T Consensus       346 ~~~--~rf~~~~~~~~~n~s--~--~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~  411 (561)
T COG5354         346 DPA--GRFKVAGAFNGLNTS--Y--CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSG  411 (561)
T ss_pred             ccC--CceEEEEEeecCCce--E--eeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCc
Confidence            974  322 44466654432  2  68999999987754      3889999998655433        35667788776


Q ss_pred             ceEEeeCCCe
Q 037288          476 SMGPQIEGKI  485 (513)
Q Consensus       476 ~~~~t~~~~~  485 (513)
                      ....+++...
T Consensus       412 ~~~ttsSs~~  421 (561)
T COG5354         412 QYVTTSSSCP  421 (561)
T ss_pred             ccceeeccCC
Confidence            5555555444

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.10  E-value=3.7e-06  Score=86.48  Aligned_cols=210  Identities=15%  Similarity=0.156  Sum_probs=138.3

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCC--eEEEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNG--AIVTVD  324 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg--~i~iwd  324 (513)
                      ...+..|+..-+|++|+.+.+.|+.|+. |.|+++++.+|....... |.++|+-+.=+.||...++.+...  -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            4457778889999999999999999965 559999999998665554 888899999888997655554332  567898


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC----eEEEeE------eecccCcccceeE--eecCCCceEEEEEcCCCCEEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ------WFELKANIWPSHT--TFMPSSISCLQSLQLYDQYFLA  392 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------w~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s  392 (513)
                      +.+.- .+ ...+.    .-.++.|+.    +++...      ||..++.......  ......-..++.|+|...+++ 
T Consensus      1174 ~~s~~-~~-~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1174 ASSTG-GP-RHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             ccccc-Cc-ccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            86521 11 11222    234555655    222221      6666654332111  011122234567899888776 


Q ss_pred             EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          393 SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       393 ~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                        .||  .+||.|  ....++.|.......   .=.|+|+|.-++.-++     |||+++-++++....-+  -+.|.|+
T Consensus      1247 --ndG--vLWDvR--~~~aIh~FD~ft~~~---~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFN 1310 (1516)
T KOG1832|consen 1247 --NDG--VLWDVR--IPEAIHRFDQFTDYG---GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFN 1310 (1516)
T ss_pred             --eCc--eeeeec--cHHHHhhhhhheecc---cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEec
Confidence              355  589999  555777776544222   1368999999888775     89999999888765433  4678888


Q ss_pred             CCC-ceEEee
Q 037288          473 TQR-SMGPQI  481 (513)
Q Consensus       473 p~~-~~~~t~  481 (513)
                      ..+ .|+++-
T Consensus      1311 stG~VmYa~~ 1320 (1516)
T KOG1832|consen 1311 STGDVMYAML 1320 (1516)
T ss_pred             cCccchhhhh
Confidence            874 455554

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=7.1e-05  Score=76.37  Aligned_cols=155  Identities=14%  Similarity=0.016  Sum_probs=111.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCC------------cEEEEEeCCCeEEEE
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSG------------NVVLCGFRNGAIVTV  323 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~------------~~l~sg~~dg~i~iw  323 (513)
                      ..-.+++|+|.| ++|.|+...|.+.|..+-+.+..+. |++.|+.+.|.|..            -+||++...|.|.+|
T Consensus        16 sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             ccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            346788898766 7888888889999999888777776 67779999998731            368888999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecCCeEEEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMDGTVKLY  402 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lw  402 (513)
                      |......+.   .+..|.+++..++|                               ....++. ..|++-.....+.+|
T Consensus        95 d~~~~s~~~---~l~~~~~~~qdl~W-------------------------------~~~rd~Srd~LlaIh~ss~lvLw  140 (1062)
T KOG1912|consen   95 DFVLASVIN---WLSHSNDSVQDLCW-------------------------------VPARDDSRDVLLAIHGSSTLVLW  140 (1062)
T ss_pred             Eehhhhhhh---hhcCCCcchhheee-------------------------------eeccCcchheeEEecCCcEEEEE
Confidence            998876533   77888888888877                               3344455 456666667899999


Q ss_pred             ecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 037288          403 DHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       403 d~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~  450 (513)
                      +..  ..+.+-.+........+  +.++| |.+++..-+..|.|.+-+.
T Consensus       141 ntd--tG~k~Wk~~ys~~iLs~--f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  141 NTD--TGEKFWKYDYSHEILSC--FRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             Ecc--CCceeeccccCCcceee--eeeCCCCcceEEEEccCceEEEEec
Confidence            886  44455555544433333  67777 4566666666777776654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.09  E-value=0.00061  Score=63.93  Aligned_cols=192  Identities=10%  Similarity=0.054  Sum_probs=105.0

Q ss_pred             EEEcCCCCEEEEEeC------CeEEEEECC-CCcEEEEeee-CCCeEEEEEecCCcEEEEEe------------------
Q 037288          262 ADFCTNPSQAVIGTN------LGAAMVDME-TGMASWVCRS-KSDILAQQVIHSGNVVLCGF------------------  315 (513)
Q Consensus       262 ~~~s~~g~~l~s~s~------~~i~vwd~~-~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~------------------  315 (513)
                      -.|++||++|.+.-+      +.|-|||.. +.+.+..+.. .-.-..+.+.|||..|+++-                  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            478999999987632      338999998 4445554542 22356777899996666652                  


Q ss_pred             CCCeEEEEECCCCccccccccc--cccCcCeEEEeeCC--eEEEeE-eecccCcccceeEeecCCCceEEEEEcCCCCEE
Q 037288          316 RNGAIVTVDVRKRQRGCSSRAG--RRHRIPYSRLQRND--RVTNEQ-WFELKANIWPSHTTFMPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~~~--~~~s~~-w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  390 (513)
                      ++..+...|..+++... -..+  .-|...|+.+++..  .++.+. |.-....                     .-.++
T Consensus       136 M~psL~~ld~~sG~ll~-q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~---------------------~~PLv  193 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLE-QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD---------------------APPLV  193 (305)
T ss_pred             cCCceEEEecCCCceee-eeecCccccccceeeEEecCCCcEEEEEecCCCCCc---------------------cCCeE
Confidence            12233333334443221 1123  22444444444433  111111 1111000                     11233


Q ss_pred             EEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEE
Q 037288          391 LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAV  469 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v  469 (513)
                      +.-..++.+...+..   ......+.+.   +  -++++++++.++++.| ..+.+.+||..+++++......+  +..+
T Consensus       194 a~~~~g~~~~~~~~p---~~~~~~l~~Y---~--gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGv  263 (305)
T PF07433_consen  194 ALHRRGGALRLLPAP---EEQWRRLNGY---I--GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGV  263 (305)
T ss_pred             EEEcCCCcceeccCC---hHHHHhhCCc---e--EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeee
Confidence            343444444444442   1112223322   2  3388899998775544 57889999999999998865543  7788


Q ss_pred             EEcCCCceEEeeCCCee
Q 037288          470 CWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       470 ~~~p~~~~~~t~~~~~~  486 (513)
                      +-.+++ +++|++.+..
T Consensus       264 a~~~~~-f~~ssG~G~~  279 (305)
T PF07433_consen  264 APTDDG-FLVSSGQGQL  279 (305)
T ss_pred             eecCCc-eEEeCCCccE
Confidence            888887 6666666544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00013  Score=75.00  Aligned_cols=143  Identities=17%  Similarity=0.106  Sum_probs=95.2

Q ss_pred             CCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecC-----CcEEEEEeCCCeEEEEECCCCcccccccccccc
Q 037288          267 NPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHS-----GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH  340 (513)
Q Consensus       267 ~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h  340 (513)
                      +|.++++|++++ |.|-.+.+.+....+..+.++.+++++|+     .+.+++|+.-| +.++.-+--.... -..+..-
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~-~v~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD-SVVLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc-ceeeecC
Confidence            599999998777 99999999988888888899999999997     46899999988 7776543222211 1123344


Q ss_pred             CcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC
Q 037288          341 RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN  420 (513)
Q Consensus       341 ~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~  420 (513)
                      .++|.++.|                                    .|+++|-++.+| |++||..  ....+..+.....
T Consensus       160 eG~I~~i~W------------------------------------~g~lIAWand~G-v~vyd~~--~~~~l~~i~~p~~  200 (846)
T KOG2066|consen  160 EGPIHSIKW------------------------------------RGNLIAWANDDG-VKVYDTP--TRQRLTNIPPPSQ  200 (846)
T ss_pred             ccceEEEEe------------------------------------cCcEEEEecCCC-cEEEecc--ccceeeccCCCCC
Confidence            555555444                                    588888888775 8999986  3333333322111


Q ss_pred             ce----eEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          421 SH----TRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       421 ~v----~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      .+    ....+.|.++.+. +- |+.-+|+|..++.
T Consensus       201 ~~R~e~fpphl~W~~~~~L-VI-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  201 SVRPELFPPHLHWQDEDRL-VI-GWGDSVKICSIKK  234 (846)
T ss_pred             CCCcccCCCceEecCCCeE-EE-ecCCeEEEEEEec
Confidence            11    1123667666543 33 4555799998873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=8.6e-05  Score=75.05  Aligned_cols=224  Identities=11%  Similarity=0.067  Sum_probs=142.5

Q ss_pred             CCCccEEEEecCCCCCCCCCcccc---cCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcE---EEEe
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSII---RRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMA---SWVC  293 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~---~~~~  293 (513)
                      ..+|.+.+.-+.+.....+..++.   ..+.-+++.||...|.-+.|+.+.+.|.++..++ |.+|-+-.|.-   ..--
T Consensus        33 G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNn  112 (1189)
T KOG2041|consen   33 GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINN  112 (1189)
T ss_pred             cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhC
Confidence            456667665555443333333322   1223467999999999999999888888775444 89998877751   1112


Q ss_pred             eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288          294 RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM  373 (513)
Q Consensus       294 ~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~  373 (513)
                      +.++-|.+++|+.||..|+..-.||.|.+=.+...+.-.  +.+.+.                                 
T Consensus       113 RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeLkg~---------------------------------  157 (1189)
T KOG2041|consen  113 RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KELKGQ---------------------------------  157 (1189)
T ss_pred             cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhcchh---------------------------------
Confidence            256679999999999999999999999887776554211  011110                                 


Q ss_pred             CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC-----CccceEEecC----CCCceeEEEEEE--------cCCCCEE
Q 037288          374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT-----TRGAVQSYEG----HVNSHTRIQLGV--------DQSERFV  436 (513)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~-----~~~~~~~~~~----h~~~v~~~~~~~--------s~~g~~l  436 (513)
                         ...-+.+++|.+.++.+-.+|.+++||..-.     ...+.-...|    ....+..  +.|        -|+-..|
T Consensus       158 ---~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~--i~w~~g~~~~v~pdrP~l  232 (1189)
T KOG2041|consen  158 ---LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE--IEWNTGPYQPVPPDRPRL  232 (1189)
T ss_pred             ---eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc--eeeccCccccCCCCCCEE
Confidence               0011467788888888888999999996310     0011111111    0001111  222        3577789


Q ss_pred             EEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          437 MSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       437 ~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +.+-.+|.+.|-.-.+. .++-. .. .-.+....|++++.++|-++.+..
T Consensus       233 avcy~nGr~QiMR~eND~~Pvv~-dt-gm~~vgakWnh~G~vLAvcG~~~d  281 (1189)
T KOG2041|consen  233 AVCYANGRMQIMRSENDPEPVVV-DT-GMKIVGAKWNHNGAVLAVCGNDSD  281 (1189)
T ss_pred             EEEEcCceehhhhhcCCCCCeEE-ec-ccEeecceecCCCcEEEEccCccc
Confidence            99999999988755443 33322 22 245889999999999999998877

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.03  E-value=0.00059  Score=61.40  Aligned_cols=180  Identities=9%  Similarity=-0.064  Sum_probs=110.4

Q ss_pred             CEEEEE-eCCeEEEEECCCCcEEEE-ee-eCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCcCe
Q 037288          269 SQAVIG-TNLGAAMVDMETGMASWV-CR-SKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPY  344 (513)
Q Consensus       269 ~~l~s~-s~~~i~vwd~~~~~~~~~-~~-~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  344 (513)
                      .+||.| +.+...+|...+.+.... .. +...|+-+.=..+ ..-+..++.|.++++.++..+...     ..-|...+
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~-----~~~h~~~~  159 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK-----FAVHNQNL  159 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----ceeecccc
Confidence            366666 556689999887653222 22 3333322211112 234566677888888877654321     11221111


Q ss_pred             EEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeE
Q 037288          345 SRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR  424 (513)
Q Consensus       345 ~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~  424 (513)
                      +                               +. -..+++++.++++.+....|-.|.+.......+.++...+.. ..
T Consensus       160 ~-------------------------------~n-s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-~g  206 (344)
T KOG4532|consen  160 T-------------------------------QN-SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-HG  206 (344)
T ss_pred             c-------------------------------ee-eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-Cc
Confidence            1                               11 147889999999999999999999862111144434332221 23


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EecCCCCCeEEEEEcCC---CceEEeeCCCee
Q 037288          425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF-----EDKFSNSVPSAVCWRTQ---RSMGPQIEGKIH  486 (513)
Q Consensus       425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~-----~~~~~~~~v~~v~~~p~---~~~~~t~~~~~~  486 (513)
                      ...+|+.....+|++.+||++.|||++......     +-.+|.+.++.+.|++.   ..+|.+-.-.+.
T Consensus       207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~  276 (344)
T KOG4532|consen  207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV  276 (344)
T ss_pred             eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence            457889989999999999999999998754222     23567899999999976   345555554443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.02  E-value=0.00052  Score=68.71  Aligned_cols=78  Identities=18%  Similarity=0.300  Sum_probs=59.3

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                      ..+..++.+.|+ +++|++..|+.|+.||+|.+||..   .+ +..+..+.-..  ..++|+|+|.++++|+..|.+.+|
T Consensus       254 tsipL~s~v~~c-a~sp~E~kLvlGC~DgSiiLyD~~---~~-~t~~~ka~~~P--~~iaWHp~gai~~V~s~qGelQ~F  326 (545)
T PF11768_consen  254 TSIPLPSQVICC-ARSPSEDKLVLGCEDGSIILYDTT---RG-VTLLAKAEFIP--TLIAWHPDGAIFVVGSEQGELQCF  326 (545)
T ss_pred             EEEecCCcceEE-ecCcccceEEEEecCCeEEEEEcC---CC-eeeeeeecccc--eEEEEcCCCcEEEEEcCCceEEEE
Confidence            345667777775 789999999999999999999985   22 22222222222  338999999999999999999999


Q ss_pred             eCCCC
Q 037288          449 SIRSG  453 (513)
Q Consensus       449 d~~~~  453 (513)
                      |+.-.
T Consensus       327 D~ALs  331 (545)
T PF11768_consen  327 DMALS  331 (545)
T ss_pred             EeecC
Confidence            98644

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.98  E-value=3.2e-05  Score=70.64  Aligned_cols=201  Identities=14%  Similarity=0.163  Sum_probs=116.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCc-EEE-----------------EeeeCCCeEEEEEecCC--cEEEEE
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGM-ASW-----------------VCRSKSDILAQQVIHSG--NVVLCG  314 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~-~~~-----------------~~~~~~~V~~l~~~~~~--~~l~sg  314 (513)
                      .+.|+++.|...|.++++|..++ |.++.-+... +..                 .+.-...|..+.|..++  +.++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            36789999999999999997555 8887644322 111                 11122458889988655  566777


Q ss_pred             eCCCeEEEEECCCCcccc-------------------c-----cccc----------------cccCcCeEEEeeCC---
Q 037288          315 FRNGAIVTVDVRKRQRGC-------------------S-----SRAG----------------RRHRIPYSRLQRND---  351 (513)
Q Consensus       315 ~~dg~i~iwd~~~~~~~~-------------------~-----~~~~----------------~~h~~~v~~v~~~~---  351 (513)
                      +.|.+|++|.+.......                   +     +..+                .+|..-|.++.|+.   
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            799999999987551100                   0     0111                23334445555554   


Q ss_pred             eEEEeE------eecccCcccc-eeEee------cCCCceEEEEEcCC-CCEEEEEecCCeEEEEecCCCCcc-c---eE
Q 037288          352 RVTNEQ------WFELKANIWP-SHTTF------MPSSISCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRG-A---VQ  413 (513)
Q Consensus       352 ~~~s~~------w~~~~~~~~~-~~~~~------~~~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~~~~~~-~---~~  413 (513)
                      .+++.-      |......... ...++      ...-|++ ..|+|. .+.|+.++..|.|++-|+|  +.. |   ..
T Consensus       186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItS-aeFhp~~cn~fmYSsSkG~Ikl~DlR--q~alcdn~~k  262 (460)
T COG5170         186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITS-AEFHPEMCNVFMYSSSKGEIKLNDLR--QSALCDNSKK  262 (460)
T ss_pred             eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhh-cccCHhHcceEEEecCCCcEEehhhh--hhhhccCchh
Confidence            333332      5544322110 00010      0112233 345554 4677888889999999998  322 1   11


Q ss_pred             Ee------------cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecCC
Q 037288          414 SY------------EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-ELVFEDKFS  462 (513)
Q Consensus       414 ~~------------~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-~~~~~~~~~  462 (513)
                      .+            .+-...+.  ++.|+++|+++++-.. -+|+|||+... .++.++..|
T Consensus       263 lfe~~~D~v~~~ff~eivsSIS--D~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSIS--DFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhc--ceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence            11            11122333  3889999999988665 57999999864 466665333

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.98  E-value=0.00017  Score=75.04  Aligned_cols=175  Identities=11%  Similarity=0.124  Sum_probs=117.2

Q ss_pred             CCEEEEE-eCCeEEEEECCCCcEEEEeeeCC-CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeE
Q 037288          268 PSQAVIG-TNLGAAMVDMETGMASWVCRSKS-DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYS  345 (513)
Q Consensus       268 g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~-~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  345 (513)
                      +..+..| -.+.+..+|+.+.+......-.. .|+-+.  .+++++++|...|+|.+-|.++.+.+   .++.+|.+.|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~i---ht~~aHs~siS  221 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETI---HTFDAHSGSIS  221 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCcee---eeeecccccee
Confidence            3344444 34557788999888777666333 455554  35789999999999999999988864   49999999999


Q ss_pred             EEeeCC-eEEEeE----------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          346 RLQRND-RVTNEQ----------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       346 ~v~~~~-~~~s~~----------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      +++..- .+++++                ||++.-+..+  .+..+....-+...+.-...+++++..|...+.|.....
T Consensus       222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             eeeccCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence            998887 666766                5554433221  111111111222233335678889999999999943212


Q ss_pred             ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      ..+...+.-|...-.+..++++++|..|+.|..+|.|.+|.
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            33344444444433345689999999999999999999997

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.93  E-value=0.0071  Score=60.80  Aligned_cols=87  Identities=14%  Similarity=0.169  Sum_probs=65.6

Q ss_pred             EEEECCCCcE----EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEE
Q 037288          280 AMVDMETGMA----SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTN  355 (513)
Q Consensus       280 ~vwd~~~~~~----~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s  355 (513)
                      .+|++..++.    +..+..++.|.|++++|+...++.|+.||.|.+||...+....     ...               
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-----~ka---------------  298 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-----AKA---------------  298 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-----eee---------------
Confidence            5677766542    2334478889999999999999999999999999997663211     100               


Q ss_pred             eEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          356 EQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       356 ~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                                         .-+...++|+|+|..|++|+..|.+.+||+.
T Consensus       299 -------------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  299 -------------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             -------------------cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence                               1112235788999999999999999999985

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.92  E-value=0.012  Score=65.28  Aligned_cols=229  Identities=11%  Similarity=0.023  Sum_probs=126.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc----EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCc
Q 037288          255 FKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM----ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      ....|..+.|++|+..||.-..+.|.+|-.....    ....+.....+..+.|+|.. ..|...+.+|.+..++..-.-
T Consensus       303 ~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v  382 (928)
T PF04762_consen  303 EEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV  382 (928)
T ss_pred             CCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence            4468899999999999999888889999887664    11222233446669999965 667777777888776653211


Q ss_pred             ccccccccccc-CcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          330 RGCSSRAGRRH-RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       330 ~~~~~~~~~~h-~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      ..  -.....+ .+.|.-|+-+...+|.-=...-+-......+..++.+..+ +|++++..+++-..||.|.+|......
T Consensus       383 ~~--s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v-af~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  383 SR--SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV-AFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             Ee--cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE-EEeCCCCeEEEEECCCCEEEEEecCCC
Confidence            00  0011111 1112222211111111000001111123455667788776 777777778999999999999854211


Q ss_pred             cc------ceEEecCC--------CCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCe---EEEEecCCCCCeEE
Q 037288          409 RG------AVQSYEGH--------VNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGE---LVFEDKFSNSVPSA  468 (513)
Q Consensus       409 ~~------~~~~~~~h--------~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~---~~~~~~~~~~~v~~  468 (513)
                      ..      ....+..+        ........++|..+..+++....+   ..+.++++...+   .+.........+..
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (928)
T PF04762_consen  460 MWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLI  539 (928)
T ss_pred             cccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEE
Confidence            11      11111110        011122346776666665555544   678888874332   33333334556666


Q ss_pred             EEEcCCC--ceEEeeCCCee
Q 037288          469 VCWRTQR--SMGPQIEGKIH  486 (513)
Q Consensus       469 v~~~p~~--~~~~t~~~~~~  486 (513)
                      +...+..  .++-+.++.+.
T Consensus       540 ~~~~~~~~~~~~q~~~G~v~  559 (928)
T PF04762_consen  540 ISSSPDSGSLYIQTNDGKVF  559 (928)
T ss_pred             EeeCCCCcEEEEEECCCEEE
Confidence            6666664  45555555555

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.91  E-value=0.017  Score=56.28  Aligned_cols=226  Identities=8%  Similarity=0.029  Sum_probs=115.4

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEeeeCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCRSKS  297 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~~  297 (513)
                      .....+.+++..+....-+ .++.+.+..    .....-..++++|||++|....   +..|.+.|+.+++.+..+.-..
T Consensus        74 ~~~d~V~v~D~~t~~~~~~-i~~p~~p~~----~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658        74 KRTDYVEVIDPQTHLPIAD-IELPEGPRF----LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             CCCCEEEEEECccCcEEeE-EccCCCchh----hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence            3456677777775544311 222111110    0122445789999999888764   4569999999998777665333


Q ss_pred             CeEEEE--------EecCCcEEEEE-eCCCeEE-----EEECCC----Ccc--cc--ccccccccCcCeEEEeeCC-eEE
Q 037288          298 DILAQQ--------VIHSGNVVLCG-FRNGAIV-----TVDVRK----RQR--GC--SSRAGRRHRIPYSRLQRND-RVT  354 (513)
Q Consensus       298 ~V~~l~--------~~~~~~~l~sg-~~dg~i~-----iwd~~~----~~~--~~--~~~~~~~h~~~v~~v~~~~-~~~  354 (513)
                      ...-..        .+.||.++... ..+|+..     ++|...    .+.  ..  --..+....+.|..++++. ...
T Consensus       149 ~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~  228 (352)
T TIGR02658       149 CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK  228 (352)
T ss_pred             CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence            222222        23344332211 1222211     222100    000  00  0000011123344443322 000


Q ss_pred             -EeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe----------cCCeEEEEecCCCCccceEEecCCCCcee
Q 037288          355 -NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS----------MDGTVKLYDHRLTTRGAVQSYEGHVNSHT  423 (513)
Q Consensus       355 -s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s----------~dg~i~lwd~~~~~~~~~~~~~~h~~~v~  423 (513)
                       ...|........  ..-..+..+.- ..++++++.+.+..          ..+.|.++|..  ..+.+..+..-. .. 
T Consensus       229 ~~~~~~~~~~~~~--~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--t~kvi~~i~vG~-~~-  301 (352)
T TIGR02658       229 FLPAIEAFTEAEK--ADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK--TGKRLRKIELGH-EI-  301 (352)
T ss_pred             ecceeeecccccc--ccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCCEEEEEECC--CCeEEEEEeCCC-ce-
Confidence             001222110000  00112333333 57888888887743          22579999986  555666655322 23 


Q ss_pred             EEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEe
Q 037288          424 RIQLGVDQSER-FVMSGG-EDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       424 ~~~~~~s~~g~-~l~sg~-~Dg~v~vwd~~~~~~~~~~  459 (513)
                       ..++++|||+ +|++.. .++.|.+.|+.+++.+.++
T Consensus       302 -~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       302 -DSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             -eeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             3489999999 887666 5788999999999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.00041  Score=71.45  Aligned_cols=182  Identities=9%  Similarity=0.115  Sum_probs=116.8

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      +.+.|+++  .+++++.|+..+ |.+.+..... ...+.|...      ..+|.++++|+.||+|.|..+.+.+...   
T Consensus        40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~---  107 (846)
T KOG2066|consen   40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT---  107 (846)
T ss_pred             hHHHHHHh--hcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce---
Confidence            46667766  467888887665 8888876433 222333322      5689999999999999999888776432   


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY  415 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~  415 (513)
                       -.....++.+|+++|                             -......+.+++|+.-| +.++.-+.........+
T Consensus       108 -~~df~rpiksial~P-----------------------------d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l  156 (846)
T KOG2066|consen  108 -QYDFKRPIKSIALHP-----------------------------DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL  156 (846)
T ss_pred             -eEecCCcceeEEecc-----------------------------chhhhhhhheeecCcce-EEEehhhhhcCccceee
Confidence             122234555555544                             00112367889999988 77776542222211134


Q ss_pred             cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC------CeEEEEEcCCCceEEeeCCCee
Q 037288          416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS------VPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~------~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..-.++|.+  +.|.  |+++|-++.+| |+|||+.+++.+..+.....      -...+.|.++..+++.=+..+.
T Consensus       157 ~~~eG~I~~--i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~  228 (846)
T KOG2066|consen  157 SEGEGPIHS--IKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVK  228 (846)
T ss_pred             ecCccceEE--EEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEE
Confidence            444555544  6665  89999998777 99999999998877643322      2456788887777766655555

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.81  E-value=0.0012  Score=64.52  Aligned_cols=216  Identities=12%  Similarity=-0.015  Sum_probs=130.5

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCe---------------
Q 037288          255 FKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGA---------------  319 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~---------------  319 (513)
                      -.-++..+.+||.|.+|++..-.+|.+|+-.....+..+. ...|..+.|+|.+++|.+-+..+.               
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeeee-cCCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence            3458899999999999999888889999987776444343 456999999999999998865544               


Q ss_pred             EEEEECCCCccccccccccccCcC--eE-EEeeCC------eEEEeE---eecccCccc--ceeEeecCCCceEEEEEcC
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIP--YS-RLQRND------RVTNEQ---WFELKANIW--PSHTTFMPSSISCLQSLQL  385 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~--v~-~v~~~~------~~~s~~---w~~~~~~~~--~~~~~~~~~~v~~~~~~~~  385 (513)
                      +.+||+.++....   .+.....+  .+ -+.|+-      +++..+   +++ ++.+.  +.+.++ ...+... .++|
T Consensus       110 ~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr-~~gi~dF-sisP  183 (561)
T COG5354         110 VFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR-PVGILDF-SISP  183 (561)
T ss_pred             eeEEeccCceeEe---eccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcc-ccceeeE-EecC
Confidence            9999999987644   44444333  22 223322      333333   222 22211  111111 1223332 3444


Q ss_pred             CCC--EEEE-----EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe-----------CCCcEEE
Q 037288          386 YDQ--YFLA-----SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG-----------EDCKLRI  447 (513)
Q Consensus       386 ~~~--~l~s-----~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-----------~Dg~v~v  447 (513)
                      .++  .|++     .+.++.+++|.+.....-..++|..    +..+.+.|.+.|++|++--           ....++|
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk----~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK----VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe----ecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence            422  2332     3567889999886211112223321    2234578888888775421           1346888


Q ss_pred             EeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          448 WSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       448 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      +++..... .......++|..++|.|...-|+...
T Consensus       260 ~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         260 LRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             Eeeccccc-ceeccccccceeeeecccCCceeEEe
Confidence            88874433 33335578999999999966555555

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.0013  Score=68.11  Aligned_cols=72  Identities=11%  Similarity=0.006  Sum_probs=58.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          258 TVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      .+.+++|+|..-.|+.|-+- .+.+|...+.+.-... .|+.+|..+.|+++|+.++++..-|.|.+|......
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            45679999999899999554 4899998776644433 388999999999999999999999999999876443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.77  E-value=0.0041  Score=57.66  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             CCeEEEEECCCCcEEEEeeeCCCeEEEE--EecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeE
Q 037288          276 NLGAAMVDMETGMASWVCRSKSDILAQQ--VIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRV  353 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~~~~~~~~~V~~l~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~  353 (513)
                      ++.|..||..+|+.++............  ..+++..+++++.++.+..||..+++... -..+                
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W-~~~~----------------   64 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLW-RFDL----------------   64 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEE-EEEC----------------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEE-Eeec----------------
Confidence            4568999999999999887532222111  33456677777899999999999887533 0011                


Q ss_pred             EEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEE-ecCCC---CceeEEEEEE
Q 037288          354 TNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS-YEGHV---NSHTRIQLGV  429 (513)
Q Consensus       354 ~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~-~~~h~---~~v~~~~~~~  429 (513)
                                          +..+.....  ..+..+++++.++.|..+|..  +...+.. .....   .........+
T Consensus        65 --------------------~~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~  120 (238)
T PF13360_consen   65 --------------------PGPISGAPV--VDGGRVYVGTSDGSLYALDAK--TGKVLWSIYLTSSPPAGVRSSSSPAV  120 (238)
T ss_dssp             --------------------SSCGGSGEE--EETTEEEEEETTSEEEEEETT--TSCEEEEEEE-SSCTCSTB--SEEEE
T ss_pred             --------------------cccccceee--ecccccccccceeeeEecccC--CcceeeeeccccccccccccccCceE
Confidence                                010000011  135566667788899999976  4445544 22221   1111212232


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC
Q 037288          430 DQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN  463 (513)
Q Consensus       430 s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~  463 (513)
                        ++..++.+..++.|..+|+++|+.+.......
T Consensus       121 --~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  121 --DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             --ETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             --ecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence              38888999989999999999999988876543

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.73  E-value=0.015  Score=53.24  Aligned_cols=195  Identities=12%  Similarity=0.069  Sum_probs=110.4

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEECCCC--cEEEEee---eC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          261 TADFCTNPSQAVIGTNLGAAMVDMETG--MASWVCR---SK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~--~~~~~~~---~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      .++.+.+|++||.-.|..|-|-.....  ..+....   .+ ..=.-++|+||+.+||.+...|+|++||+-...... +
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~-I   80 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV-I   80 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEE-c
Confidence            466778999999998888776654433  1222222   11 225789999999999999999999999997543211 1


Q ss_pred             cc---ccc-cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc
Q 037288          335 RA---GRR-HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG  410 (513)
Q Consensus       335 ~~---~~~-h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~  410 (513)
                      ..   +.+ -..+|..+.|-+                    ...+     ..+   ...|++-..+|.++-|-+.....+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~--------------------~~~s-----~~w---s~ELlvi~Y~G~L~Sy~vs~gt~q  132 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLE--------------------YKKS-----AQW---SYELLVINYRGQLRSYLVSVGTNQ  132 (282)
T ss_pred             CcccccCCccccceeeeEeec--------------------cccc-----ccc---ceeEEEEeccceeeeEEEEcccCC
Confidence            00   111 122333333311                    0000     000   234566667777777765211111


Q ss_pred             ---ceE--EecC-CCCceeEEEEEEcCCCCEEEEEeC----C-------CcEEEEeCCCCeEEEE---------------
Q 037288          411 ---AVQ--SYEG-HVNSHTRIQLGVDQSERFVMSGGE----D-------CKLRIWSIRSGELVFE---------------  458 (513)
Q Consensus       411 ---~~~--~~~~-h~~~v~~~~~~~s~~g~~l~sg~~----D-------g~v~vwd~~~~~~~~~---------------  458 (513)
                         ...  .|.. +...|..  +.++|.-++|+.||.    |       .-+.-|.+-++.+...               
T Consensus       133 ~y~e~hsfsf~~~yp~Gi~~--~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~  210 (282)
T PF15492_consen  133 GYQENHSFSFSSHYPHGINS--AVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR  210 (282)
T ss_pred             cceeeEEEEecccCCCceeE--EEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence               222  3333 3556666  788888777776653    1       1356676543321111               


Q ss_pred             --------------ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          459 --------------DKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       459 --------------~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                                    .......|..+..+|++..+|+....-.
T Consensus       211 ~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~  252 (282)
T PF15492_consen  211 RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS  252 (282)
T ss_pred             cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence                          0112456888999999888887765544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.0061  Score=63.58  Aligned_cols=198  Identities=11%  Similarity=0.059  Sum_probs=110.1

Q ss_pred             EEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCC-eEEEEEecCCcEEEEEeCCC-----eEEEEECCCCccccccc
Q 037288          263 DFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSD-ILAQQVIHSGNVVLCGFRNG-----AIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       263 ~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~-V~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~  335 (513)
                      .|++++..++.|+ ++.|.+.+-.-........+... |..+....+.++|++-+.|+     .++|||+...+....-.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            3456777888885 45576555331111122224444 55554444446777777664     58999997653211000


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC-CccceEE
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT-TRGAVQS  414 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~-~~~~~~~  414 (513)
                      .+..|+  +.                      .........+.+..+++.+-+.+|+|-.||.|..+.-+.. +.+.-..
T Consensus       110 c~~~~r--i~----------------------~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~  165 (933)
T KOG2114|consen  110 CLYEHR--IF----------------------TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD  165 (933)
T ss_pred             eeeeee--ee----------------------ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence            000000  00                      0011112344555678888899999999999999853211 2222222


Q ss_pred             ec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          415 YE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL-VFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       415 ~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +. ....+|+.  +++-.+++.++-...-..|.+|.+....+ +..+..++.++++..+++...-|+.+++..-
T Consensus       166 ~~~~~~~pITg--L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l  237 (933)
T KOG2114|consen  166 YSHRGKEPITG--LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL  237 (933)
T ss_pred             eeccCCCCcee--eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceE
Confidence            22 23456777  66666776633333345699999985542 4447788888999999988543444444433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.70  E-value=0.019  Score=57.42  Aligned_cols=178  Identities=13%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             CCEEEE-EeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc------cc
Q 037288          268 PSQAVI-GTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR------RH  340 (513)
Q Consensus       268 g~~l~s-~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------~h  340 (513)
                      +..+.. +.++.+..+|..+|+.++.......+.+.-.. .+..++.++.+|.+..||.++++.......-.      ..
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            444444 45677999999999998877655544332222 34567777889999999998886533111000      00


Q ss_pred             CcCeEEEeeCCeEEEeE-------eecccCcccceeEeecCC---------CceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          341 RIPYSRLQRNDRVTNEQ-------WFELKANIWPSHTTFMPS---------SISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       341 ~~~v~~v~~~~~~~s~~-------w~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                      ..++.   ....++.+.       ++...++..-......+.         .+.+...+  .+..+++++.+|.+..||.
T Consensus       184 ~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       184 ASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDL  258 (377)
T ss_pred             CCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEEC
Confidence            11111   011222221       444444322111111100         00010111  2457777888999999998


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      .  ....+-... .... ..  ..  .++..|+.++.||.|+.+|..+|+.+...
T Consensus       259 ~--tG~~~W~~~-~~~~-~~--p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       259 R--SGRVLWKRD-ASSY-QG--PA--VDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             C--CCcEEEeec-cCCc-cC--ce--EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence            6  333333332 1111 11  11  24678888899999999999999887665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.68  E-value=0.0091  Score=55.31  Aligned_cols=175  Identities=13%  Similarity=0.093  Sum_probs=99.8

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR  346 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  346 (513)
                      ++.+++...++.+..||..+|+.++.......+.... ..++..+++++.|+.+..+|..+++.....  ......    
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~--~~~~~~----  108 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI--YLTSSP----  108 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE--EE-SSC----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeee--cccccc----
Confidence            4444545467779999999999998887655433222 234556677778889999999888754300  000000    


Q ss_pred             EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCcee---
Q 037288          347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHT---  423 (513)
Q Consensus       347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~---  423 (513)
                                                 .............+..++++..++.|..+|+.  +...+..+........   
T Consensus       109 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--tG~~~w~~~~~~~~~~~~~  159 (238)
T PF13360_consen  109 ---------------------------PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK--TGKLLWKYPVGEPRGSSPI  159 (238)
T ss_dssp             ---------------------------TCSTB--SEEEEETTEEEEEETCSEEEEEETT--TTEEEEEEESSTT-SS--E
T ss_pred             ---------------------------ccccccccCceEecCEEEEEeccCcEEEEecC--CCcEEEEeecCCCCCCcce
Confidence                                       00000000111237788888889999999986  4445555544332210   


Q ss_pred             ------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          424 ------RIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       424 ------~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                            ...+.+ .++ .++.++.++.+.-+|+.+++.+....  ...+..+....++.+++++
T Consensus       160 ~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  160 SSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             EEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEE
T ss_pred             eeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEe
Confidence                  011222 234 77777878864444999999775433  2223332334445666555

...

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.68  E-value=0.049  Score=54.89  Aligned_cols=213  Identities=12%  Similarity=0.062  Sum_probs=113.5

Q ss_pred             EEEcCCCCEEEEEeCC------------eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          262 ADFCTNPSQAVIGTNL------------GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       262 ~~~s~~g~~l~s~s~~------------~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      ++.+|.|-.+|...+.            .|.||+.. |+.+..+. ..+.+.++.|+.+..++ +-..||.+++||+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCc
Confidence            4445555555555443            48888876 55555444 23679999998765555 5558999999999643


Q ss_pred             ccccc----cccccccCcCeEEEeeC-C--eEEEeE---eecccCc------c---cceeEe--ecCCCceEEEEEcCCC
Q 037288          329 QRGCS----SRAGRRHRIPYSRLQRN-D--RVTNEQ---WFELKAN------I---WPSHTT--FMPSSISCLQSLQLYD  387 (513)
Q Consensus       329 ~~~~~----~~~~~~h~~~v~~v~~~-~--~~~s~~---w~~~~~~------~---~~~~~~--~~~~~v~~~~~~~~~~  387 (513)
                      . ...    +....-....+.++.+. .  .++++.   +......      .   .+....  ........+..++.+.
T Consensus       112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~  190 (410)
T PF04841_consen  112 F-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR  190 (410)
T ss_pred             e-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc
Confidence            3 110    11111111222222222 1  222222   1111100      0   000000  0011111112344455


Q ss_pred             CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCe
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVP  466 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v  466 (513)
                      ...+....++.+.+.+-.  .   ...+. ..+++  ..+++||+|++||.-..+|.+.+.+..-.+.+.++... ....
T Consensus       191 ~~~i~~~~g~~i~~i~~~--~---~~~i~-~~~~i--~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p  262 (410)
T PF04841_consen  191 VVEILLANGETIYIIDEN--S---FKQID-SDGPI--IKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPP  262 (410)
T ss_pred             ceEEEEecCCEEEEEEcc--c---ccccc-CCCCe--EEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCC
Confidence            555555556666644432  1   11122 12344  44899999999999999999999988777777776544 4567


Q ss_pred             EEEEEcCCCceEEeeCCCe
Q 037288          467 SAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       467 ~~v~~~p~~~~~~t~~~~~  485 (513)
                      ..++|.-+..+++.-...+
T Consensus       263 ~~~~WCG~dav~l~~~~~l  281 (410)
T PF04841_consen  263 KQMAWCGNDAVVLSWEDEL  281 (410)
T ss_pred             cEEEEECCCcEEEEeCCEE
Confidence            8888988766655554333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00066  Score=64.47  Aligned_cols=165  Identities=11%  Similarity=-0.019  Sum_probs=99.6

Q ss_pred             EEEEECCCCcEEEEee-eCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288          279 AAMVDMETGMASWVCR-SKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       279 i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~  356 (513)
                      +++.+..+.+....+. +...|..++|+|..+ ++..++.+.+|+|.|+++....   ..+..| .++++++|.      
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---ssy~a~-~~~wSC~wD------  244 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---SSYIAY-NQIWSCCWD------  244 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee---eheecc-CCceeeeec------
Confidence            5555554444433333 455699999999876 8899999999999999987642   345555 555554442      


Q ss_pred             EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCC--CCceeEEE----EEEc
Q 037288          357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH--VNSHTRIQ----LGVD  430 (513)
Q Consensus       357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h--~~~v~~~~----~~~s  430 (513)
                                                 -.+.+++..|...|.|.+||+|.++ +++..+.+.  .++|..+.    -...
T Consensus       245 ---------------------------lde~h~IYaGl~nG~VlvyD~R~~~-~~~~e~~a~~t~~pv~~i~~~~~n~~f  296 (463)
T KOG1645|consen  245 ---------------------------LDERHVIYAGLQNGMVLVYDMRQPE-GPLMELVANVTINPVHKIAPVQPNKIF  296 (463)
T ss_pred             ---------------------------cCCcceeEEeccCceEEEEEccCCC-chHhhhhhhhccCcceeecccCccccc
Confidence                                       1246677888889999999999432 244444331  12221100    0123


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC--CeEEEEec-CCCCCeEEEEEcCC-CceEEeeCC
Q 037288          431 QSERFVMSGGEDCKLRIWSIRS--GELVFEDK-FSNSVPSAVCWRTQ-RSMGPQIEG  483 (513)
Q Consensus       431 ~~g~~l~sg~~Dg~v~vwd~~~--~~~~~~~~-~~~~~v~~v~~~p~-~~~~~t~~~  483 (513)
                      +.|.+|+....+  +..|++..  +....++. ...++..++++++. ..+++|-..
T Consensus       297 ~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  297 TSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             cccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecC
Confidence            446677777766  56676543  23333222 22456777788775 556666554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.64  E-value=0.03  Score=56.43  Aligned_cols=148  Identities=20%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             CCEEEEEeCCeEEEEECCCCcEEEEeeeCCC--------eEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          268 PSQAVIGTNLGAAMVDMETGMASWVCRSKSD--------ILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       268 g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~--------V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      +..++...++.+..+|..+|+.++......+        ...+.-+|  .+..++.++.+|.+..+|..+++...     
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W-----  280 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW-----  280 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE-----
Confidence            4444455667788889999987776542111        01111122  24567777789999999998886432     


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                                           ....+           . .... .  ..+..+..++.+|.+..+|..  ....+-....
T Consensus       281 ---------------------~~~~~-----------~-~~~~-~--~~~~~vy~~~~~g~l~ald~~--tG~~~W~~~~  322 (394)
T PRK11138        281 ---------------------KREYG-----------S-VNDF-A--VDGGRIYLVDQNDRVYALDTR--GGVELWSQSD  322 (394)
T ss_pred             ---------------------eecCC-----------C-ccCc-E--EECCEEEEEcCCCeEEEEECC--CCcEEEcccc
Confidence                                 00000           0 0000 1  135667777888999999985  2222222211


Q ss_pred             CCCc-eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC
Q 037288          418 HVNS-HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS  462 (513)
Q Consensus       418 h~~~-v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~  462 (513)
                      -... ...  ..+  .+..|+.++.||.|++.|..+|+.+...+..
T Consensus       323 ~~~~~~~s--p~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~  364 (394)
T PRK11138        323 LLHRLLTA--PVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD  364 (394)
T ss_pred             cCCCcccC--CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence            1111 111  111  2567888999999999999999998876543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.60  E-value=0.025  Score=52.31  Aligned_cols=204  Identities=9%  Similarity=0.086  Sum_probs=108.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCC--eEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNL--GAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~--~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      +.+-...+..++|+|+...|++..|.  .|...+.. |+.+..+.  ..++.-.|++..++.++++--+++.+.++++..
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            55555679999999987766655543  37677764 77766665  345688999988888888777799999999855


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .........       +..+..                  ............ +++++.++.|+++-...-..+|.++..
T Consensus        96 ~~~~~~~~~-------~~~~~l------------------~~~~~~N~G~EG-la~D~~~~~L~v~kE~~P~~l~~~~~~  149 (248)
T PF06977_consen   96 DTTSLDRAD-------VQKISL------------------GFPNKGNKGFEG-LAYDPKTNRLFVAKERKPKRLYEVNGF  149 (248)
T ss_dssp             --TT--EEE-------EEEEE---------------------S---SS--EE-EEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred             cccccchhh-------ceEEec------------------ccccCCCcceEE-EEEcCCCCEEEEEeCCCChhhEEEccc
Confidence            432110000       111100                  000011223334 366777777777766666667766420


Q ss_pred             Ccc-ce--EEec------CCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecCCC---------CCeEE
Q 037288          408 TRG-AV--QSYE------GHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGELVFEDKFSN---------SVPSA  468 (513)
Q Consensus       408 ~~~-~~--~~~~------~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~---------~~v~~  468 (513)
                      ... .+  ....      ........  ++++|. |.+++-+..+..|..+| .+|+++..+.-..         .-.-.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~S~--l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEG  226 (248)
T PF06977_consen  150 PGGFDLFVSDDQDLDDDKLFVRDLSG--LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEG  226 (248)
T ss_dssp             T-SS--EEEE-HHHH-HT--SS---E--EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEE
T ss_pred             cCccceeeccccccccccceeccccc--eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccE
Confidence            011 11  1111      12222333  677886 55667777888999999 7788777653322         24789


Q ss_pred             EEEcCCCceEEeeCCCe
Q 037288          469 VCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       469 v~~~p~~~~~~t~~~~~  485 (513)
                      |+|.+++.+++.++-..
T Consensus       227 Ia~d~~G~LYIvsEpNl  243 (248)
T PF06977_consen  227 IAFDPDGNLYIVSEPNL  243 (248)
T ss_dssp             EEE-TT--EEEEETTTE
T ss_pred             EEECCCCCEEEEcCCce
Confidence            99999999999988653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.59  E-value=0.0052  Score=61.81  Aligned_cols=192  Identities=11%  Similarity=0.029  Sum_probs=115.9

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE---eCC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEE--
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG---TNL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTV--  323 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~---s~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iw--  323 (513)
                      +..-...+..-+|+|++..++..   ..+  .+.++|+.+++........+.-..-+|+|||+ ++++...||...||  
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            34444677888999999876643   233  38899999998777777666777889999995 56677777765555  


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLY  402 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lw  402 (513)
                      |+.......    +                                  .....+.+--.++|+|+.++-.+. .|.-.||
T Consensus       268 dl~~~~~~~----L----------------------------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~  309 (425)
T COG0823         268 DLDGKNLPR----L----------------------------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY  309 (425)
T ss_pred             cCCCCccee----c----------------------------------ccCCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence            665554211    1                                  111122222478899999886654 5554554


Q ss_pred             ecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          403 DHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-CK--LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       403 d~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-g~--v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                      -... +......+.-....-..  -.++|||++|+..+.. |.  |.+.|+.++.-++.+.. ......-.|.+++.++.
T Consensus       310 ~~~~-~g~~~~riT~~~~~~~~--p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         310 LYDL-EGSQVTRLTFSGGGNSN--PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TYLNESPSWAPNGRMIM  385 (425)
T ss_pred             EECC-CCCceeEeeccCCCCcC--ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-cccCCCCCcCCCCceEE
Confidence            4331 23333333322222212  5789999998876643 44  77777766664444332 33345667788865555


Q ss_pred             eeCCCe
Q 037288          480 QIEGKI  485 (513)
Q Consensus       480 t~~~~~  485 (513)
                      ...+..
T Consensus       386 ~~s~~~  391 (425)
T COG0823         386 FSSGQG  391 (425)
T ss_pred             EeccCC
Confidence            554444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.56  E-value=2.9e-05  Score=77.58  Aligned_cols=187  Identities=14%  Similarity=0.208  Sum_probs=114.0

Q ss_pred             eeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeC-----CeEEEEECCCCc
Q 037288          215 TSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTN-----LGAAMVDMETGM  288 (513)
Q Consensus       215 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~-----~~i~vwd~~~~~  288 (513)
                      |..+.+..+|.+.+.+...+...          .-....+|....++++|++ |...||+|-+     ..+.|||+.++-
T Consensus        71 cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~l  140 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDS----------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLL  140 (783)
T ss_pred             hhhhhccccCceEEeecCCcccc----------cceecccccccccccccccccHHHHHhhhhhhcccCCccceeccccc
Confidence            33444556688888776644332          1233567788999999998 6778888843     238999998872


Q ss_pred             ----EEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeeccc
Q 037288          289 ----ASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELK  362 (513)
Q Consensus       289 ----~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~  362 (513)
                          ....+.  ....+.+++|-.+.+++++|.....+.++|+|......  ..+  .+..+..                
T Consensus       141 tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--~sv--nTk~vqG----------------  200 (783)
T KOG1008|consen  141 TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--SSV--NTKYVQG----------------  200 (783)
T ss_pred             CCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh--hhh--hhhhccc----------------
Confidence                112222  23446788888888999999999999999998442111  000  0001111                


Q ss_pred             CcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEe-cCCCCccceEEecCCCCc--eeEEEEEEcCCC-CEEE
Q 037288          363 ANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYD-HRLTTRGAVQSYEGHVNS--HTRIQLGVDQSE-RFVM  437 (513)
Q Consensus       363 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd-~~~~~~~~~~~~~~h~~~--v~~~~~~~s~~g-~~l~  437 (513)
                                        ..++| .++|+++-. ||.|.+|| .+. -..++..+....+.  -....++|.|.- ..++
T Consensus       201 ------------------~tVdp~~~nY~cs~~-dg~iAiwD~~rn-ienpl~~i~~~~N~~~~~l~~~aycPtrtglla  260 (783)
T KOG1008|consen  201 ------------------ITVDPFSPNYFCSNS-DGDIAIWDTYRN-IENPLQIILRNENKKPKQLFALAYCPTRTGLLA  260 (783)
T ss_pred             ------------------ceecCCCCCceeccc-cCceeeccchhh-hccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence                              23344 677887666 99999999 542 12244444323332  112447887753 2444


Q ss_pred             EEeC-CCcEEEEeCC
Q 037288          438 SGGE-DCKLRIWSIR  451 (513)
Q Consensus       438 sg~~-Dg~v~vwd~~  451 (513)
                      +... .++|+++++.
T Consensus       261 ~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  261 VLSRDSITIRLYDIC  275 (783)
T ss_pred             hhccCcceEEEeccc
Confidence            4444 5789999875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.56  E-value=0.01  Score=64.40  Aligned_cols=212  Identities=12%  Similarity=0.084  Sum_probs=122.1

Q ss_pred             cCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          256 KCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      .+.|.++.|..++..++.+ ..|.|.+-|.++......-.....|.+++|+||+.+++..+.++++.+-+-. -.++. -
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~-E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA-E  145 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh-c
Confidence            3689999999988877765 4556777788887765555577889999999999999999888888765431 11111 1


Q ss_pred             cccccc---CcCeEEEeeCC--eEEEeEeecccCcccc------ee---EeecCCCceEEEEEcCCCCEEEEE-----ec
Q 037288          335 RAGRRH---RIPYSRLQRND--RVTNEQWFELKANIWP------SH---TTFMPSSISCLQSLQLYDQYFLAS-----SM  395 (513)
Q Consensus       335 ~~~~~h---~~~v~~v~~~~--~~~s~~w~~~~~~~~~------~~---~~~~~~~v~~~~~~~~~~~~l~s~-----s~  395 (513)
                      +.+...   .+....+.|..  .-+.|    ..++..+      ..   .+...+.-++ +.|.-||++||+.     ..
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrg----s~gr~~~~~~~~~ek~~~~~~~~~~~~~-IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRG----SEGRQAARQKIEKEKALEQIEQDDHKTS-ISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             cccccccccccccceecccccceeeec----chhhhcccccccccccccchhhccCCce-EEEccCCcEEEEEEEeccCC
Confidence            111100   11112222211  00000    0010000      00   0011222223 4677899999984     33


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeEEEE----ecCCCCCeEE
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIRSGELVFE----DKFSNSVPSA  468 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~~~~~~~~----~~~~~~~v~~  468 (513)
                      ...|++||-.    +.+........ ...-+++|-|.|.++++-.   .|+.|.+|. ++|-.-..    +......+..
T Consensus       221 ~RkirV~drE----g~Lns~se~~~-~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~  294 (1265)
T KOG1920|consen  221 TRKIRVYDRE----GALNSTSEPVE-GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEE  294 (1265)
T ss_pred             ceeEEEeccc----chhhcccCccc-ccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchhe
Confidence            3789999963    32222211111 1112389999999998753   366899998 44443332    2222344899


Q ss_pred             EEEcCCCceEEe
Q 037288          469 VCWRTQRSMGPQ  480 (513)
Q Consensus       469 v~~~p~~~~~~t  480 (513)
                      ++|+.+..++|.
T Consensus       295 L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  295 LAWNSNSDILAV  306 (1265)
T ss_pred             eeecCCCCceee
Confidence            999999877776

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.47  E-value=0.094  Score=48.90  Aligned_cols=178  Identities=10%  Similarity=0.067  Sum_probs=99.2

Q ss_pred             EEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEe-cCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          261 TADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVI-HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       261 ~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      +..|.+ ++.++++.. .+.|..|+..++.... +.... ...+++. +++.+++ +..++ +.++|+.+++... +...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~-~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTV-LADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEE-EEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEE-Eeec
Confidence            567887 677777764 5669999998876543 33223 7777888 6655544 44544 4555988775432 1111


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC--------CeEEEEecCCCCc
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD--------GTVKLYDHRLTTR  409 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d--------g~i~lwd~~~~~~  409 (513)
                      .......                              ..... .++.++|++.++....        |.|..++..    
T Consensus        79 ~~~~~~~------------------------------~~~ND-~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----  123 (246)
T PF08450_consen   79 PDGGVPF------------------------------NRPND-VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----  123 (246)
T ss_dssp             ETTCSCT------------------------------EEEEE-EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----
T ss_pred             cCCCccc------------------------------CCCce-EEEcCCCCEEEEecCCCccccccccceEEECCC----
Confidence            1000000                              01111 4677889877766543        456666653    


Q ss_pred             cceEEecCCCCceeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC-e------EEEEecCCCCCeEEEEEcCCCceEEe
Q 037288          410 GAVQSYEGHVNSHTRIQLGVDQSERFVM-SGGEDCKLRIWSIRSG-E------LVFEDKFSNSVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~-sg~~Dg~v~vwd~~~~-~------~~~~~~~~~~~v~~v~~~p~~~~~~t  480 (513)
                      ..+..+...-.....  ++|+|+++.|+ +-+..+.|..+++... .      .+..+....+..-.+++..++.++++
T Consensus       124 ~~~~~~~~~~~~pNG--i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va  200 (246)
T PF08450_consen  124 GKVTVVADGLGFPNG--IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA  200 (246)
T ss_dssp             SEEEEEEEEESSEEE--EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred             CeEEEEecCcccccc--eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence            222222212222233  88999999776 5567888999998632 2      12222222234778999988777776

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.43  E-value=0.0026  Score=65.38  Aligned_cols=147  Identities=14%  Similarity=0.144  Sum_probs=104.3

Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS  376 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~  376 (513)
                      +.-.+++|+|.| +||-|+. ..|.+.|.++-+.   ++.+.-|...|+.+.|.|             ..     .+.  
T Consensus        16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~---iqsie~h~s~V~~VrWap-------------~~-----~p~--   70 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQL---IQSIELHQSAVTSVRWAP-------------AP-----SPR--   70 (1062)
T ss_pred             ccccccccCccc-eEEEecC-ceEEEEehhhhhh---hhccccCccceeEEEecc-------------CC-----Cch--
Confidence            346788899877 4555543 5788999998876   558889999999999976             00     000  


Q ss_pred             ceEEEEEcC--CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC
Q 037288          377 ISCLQSLQL--YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE--RFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       377 v~~~~~~~~--~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g--~~l~sg~~Dg~v~vwd~~~  452 (513)
                          ..++|  ..-.||++...|.|.+||..  ....+..+..|..++..++..+..+.  .+|++-..-.+|.+|+..+
T Consensus        71 ----~llS~~~~~lliAsaD~~GrIil~d~~--~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt  144 (1062)
T KOG1912|consen   71 ----DLLSPSSSQLLIASADISGRIILVDFV--LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT  144 (1062)
T ss_pred             ----hccCccccceeEEeccccCcEEEEEeh--hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence                01222  23356777888999999997  44466677878888766444444333  4566666778999999999


Q ss_pred             CeEEEEecCCCCCeEEEEEcCC
Q 037288          453 GELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       453 ~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      |+.+-..........++.+.|-
T Consensus       145 G~k~Wk~~ys~~iLs~f~~DPf  166 (1062)
T KOG1912|consen  145 GEKFWKYDYSHEILSCFRVDPF  166 (1062)
T ss_pred             CceeeccccCCcceeeeeeCCC
Confidence            9999888777777777888775

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0026  Score=61.37  Aligned_cols=199  Identities=9%  Similarity=-0.071  Sum_probs=121.5

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE----eeeCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCC
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV----CRSKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRK  327 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~----~~~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~  327 (513)
                      -|.+.|+-+... -.+++.+++ |+.++.|--..-.-+..    ..|-..|.+++.+-+|.++.+.+. |..++++|+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            366667666554 345666665 56699996543222222    236677899999999999999877 99999999876


Q ss_pred             Ccccccccc---cccc-------CcCeEEEeeCC------eEEEeEeecccCcccceeE-eecCCCceEEEEEcCCCCEE
Q 037288          328 RQRGCSSRA---GRRH-------RIPYSRLQRND------RVTNEQWFELKANIWPSHT-TFMPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       328 ~~~~~~~~~---~~~h-------~~~v~~v~~~~------~~~s~~w~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l  390 (513)
                      -.... ...   +++.       ..++..++.+.      .+    +|...+....... -.|.++|.++ .+.+-+..+
T Consensus        86 ~Dmin-miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~V----vD~~~d~~q~~~fkklH~sPV~~i-~y~qa~Ds~  159 (558)
T KOG0882|consen   86 FDMIN-MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFV----VDGFGDFCQDGYFKKLHFSPVKKI-RYNQAGDSA  159 (558)
T ss_pred             cchhh-hcccccCCCceEEecCCCCeeeeEEeecccCCCcEE----ECCcCCcCccceecccccCceEEE-Eeeccccce
Confidence            65432 111   1221       11222222211      01    2222222111122 2344566665 667788889


Q ss_pred             EEEecCCeEEEEecCC----CCccceEEec---------CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          391 LASSMDGTVKLYDHRL----TTRGAVQSYE---------GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~----~~~~~~~~~~---------~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      ++....|.|.-|...-    +.......++         -.....  .++.|+|+|..+.+-+.|..|+++++++|++++
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p--ts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP--TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCc--cceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            9999899999998751    1111111111         011122  348899999999999999999999999999888


Q ss_pred             EecC
Q 037288          458 EDKF  461 (513)
Q Consensus       458 ~~~~  461 (513)
                      .+..
T Consensus       238 eiDE  241 (558)
T KOG0882|consen  238 EIDE  241 (558)
T ss_pred             hhhc
Confidence            7643

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.36  E-value=0.013  Score=60.08  Aligned_cols=121  Identities=14%  Similarity=0.122  Sum_probs=79.5

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCc---EEEEee-
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGM---ASWVCR-  294 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~---~~~~~~-  294 (513)
                      +...|.+++|+-........           ...+-.+.+..+..|++..++|+|++++ |.++-+..+.   ...... 
T Consensus        51 GsS~G~lyl~~R~~~~~~~~-----------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   51 GSSAGSVYLYNRHTGEMRKL-----------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             ecccceEEEEecCchhhhcc-----------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            34567777777664433311           1222345666777888888888887766 6666655432   111111 


Q ss_pred             ---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC-ccccccccccccCcCeEEEeeCC
Q 037288          295 ---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR-QRGCSSRAGRRHRIPYSRLQRND  351 (513)
Q Consensus       295 ---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~  351 (513)
                         |+..|+|++|++++..+++|...|+|..-.+... ......+.+..-...|..+++..
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence               5667999999999999999999999999988772 11112334455567788888766

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.36  E-value=0.00024  Score=73.64  Aligned_cols=169  Identities=14%  Similarity=0.109  Sum_probs=110.7

Q ss_pred             eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE--------eeccc
Q 037288          295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ--------WFELK  362 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~--------w~~~~  362 (513)
                      +....+|++|+.+.+.|+.|+..|.|+++++.++....   ...+|..+|+.+.=+.    .+.+.+        |+...
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            66678999999999999999999999999999997644   8889999999887655    344444        55443


Q ss_pred             CcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe-cCCCC-ceeEEEEEEcCCCCEEEEEe
Q 037288          363 ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY-EGHVN-SHTRIQLGVDQSERFVMSGG  440 (513)
Q Consensus       363 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~~-~v~~~~~~~s~~g~~l~sg~  440 (513)
                       ...+.+.+.    -...+.|+...+.-+.|+......+||+.  ...++.+| .+-.. ....-...|+|++.+++-  
T Consensus      1177 -~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq--T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1177 -TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQ--TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred             -ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecc--cCcHHHHhcCcchhhhhhccccccCCCcceEee--
Confidence             111222222    22334566555555566666688999996  34455553 22111 111122789999998864  


Q ss_pred             CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                       ||.  +||++..+-++.|..-. .--.-.|+|++.-++
T Consensus      1248 -dGv--LWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1248 -DGV--LWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVI 1282 (1516)
T ss_pred             -Cce--eeeeccHHHHhhhhhhe-ecccccccCCCceEE
Confidence             553  89999988887765432 223446888865444

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.33  E-value=0.021  Score=45.00  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             eEEEEEec---CC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          299 ILAQQVIH---SG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       299 V~~l~~~~---~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                      |+++++..   || +.|++|+.|..|++|+-..-                                       ...+...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------------------------------~~Ei~e~   42 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------------------------------VAEITET   42 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------------------------------EEEEecc
Confidence            56666554   44 78999999999999976532                                       1234445


Q ss_pred             CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCCcEE
Q 037288          375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLR  446 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg~v~  446 (513)
                      +.++++..+.  +..|+.+..+|+|-+|+-.    ..+-..+.....+......++.|| .-|++|-.+|.|-
T Consensus        43 ~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   43 DKVTSLCSLG--GGRFAYALANGTVGVYDRS----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cceEEEEEcC--CCEEEEEecCCEEEEEeCc----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5666665554  4779999999999999853    223333322223222122333333 3688888888764

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.31  E-value=0.026  Score=58.25  Aligned_cols=172  Identities=15%  Similarity=0.090  Sum_probs=100.6

Q ss_pred             EEEcCCCCEEEEEeC--CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC----eEEEEECCCCccccccc
Q 037288          262 ADFCTNPSQAVIGTN--LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG----AIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       262 ~~~s~~g~~l~s~s~--~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~  335 (513)
                      +-+.+||+.+...+.  +.+.+.|.++.+..+.+.-......++++++|.++++.+.+.    ++...+......     
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-----  272 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-----  272 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCce-----
Confidence            345568876653332  337788999888877777666677888999999888886322    222222221111     


Q ss_pred             cccccCcCeEEEeeCC------------eEEEeE----eeccc---CcccceeEeecCCCceEEEEEcCCCCEEEEEec-
Q 037288          336 AGRRHRIPYSRLQRND------------RVTNEQ----WFELK---ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-  395 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~------------~~~s~~----w~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-  395 (513)
                                .+.|+.            .++.+.    .|...   ........+..+.....+ .++|||+++++++. 
T Consensus       273 ----------~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV-~vSPDGkylyVankl  341 (635)
T PRK02888        273 ----------VVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGV-NTSPDGKYFIANGKL  341 (635)
T ss_pred             ----------EEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccce-EECCCCCEEEEeCCC
Confidence                      111111            001000    22222   001122333444444443 68999999887765 


Q ss_pred             CCeEEEEecCCCCc----------cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          396 DGTVKLYDHRLTTR----------GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       396 dg~i~lwd~~~~~~----------~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      +.+|.++|+.....          ..+...+--.++   +..+|+++|+...|-..|..|..||+..
T Consensus       342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            89999999973221          012233322223   3468899998888888899999999976

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0041  Score=60.11  Aligned_cols=203  Identities=12%  Similarity=0.052  Sum_probs=128.1

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC--CeEEEEECCCCcEEEEeeeCCCeEEEEEe-cCC---cEEEE-EeCCCeEEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN--LGAAMVDMETGMASWVCRSKSDILAQQVI-HSG---NVVLC-GFRNGAIVTVD  324 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~--~~i~vwd~~~~~~~~~~~~~~~V~~l~~~-~~~---~~l~s-g~~dg~i~iwd  324 (513)
                      +..|...|..++.+.++.++++.++  ..++++|++.-..+..++....--.+.|. ..|   ..|++ .-.+|.+.++|
T Consensus        49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD  128 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD  128 (558)
T ss_pred             hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence            6678888999999999999998765  45999998876544333322111122222 223   23443 44579999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccccee----Eeec---------CCCceEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSH----TTFM---------PSSISCLQ  381 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~----~~~~---------~~~v~~~~  381 (513)
                      -+...... .-.-.-|..+|..+.+++   .+++.-       |.....-..|..    ..++         ........
T Consensus       129 ~~~d~~q~-~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~  207 (558)
T KOG0882|consen  129 GFGDFCQD-GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF  207 (558)
T ss_pred             CcCCcCcc-ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence            88665433 334456889999998888   333322       776631111111    0111         11233335


Q ss_pred             EEcCCCCEEEEEecCCeEEEEecCCCCccceEE--------------------------------ecCCCCceeEEEEEE
Q 037288          382 SLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS--------------------------------YEGHVNSHTRIQLGV  429 (513)
Q Consensus       382 ~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~--------------------------------~~~h~~~v~~~~~~~  429 (513)
                      .++|++..+.+-+.|..|++++++..  ..++.                                ++.|. ......+.|
T Consensus       208 Efsp~g~qistl~~DrkVR~F~~KtG--klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~-~~~~~~~~f  284 (558)
T KOG0882|consen  208 EFSPDGAQISTLNPDRKVRGFVFKTG--KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG-STVGTNAVF  284 (558)
T ss_pred             EEccccCcccccCcccEEEEEEeccc--hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc-CcccceeEE
Confidence            88999999999999999999998632  12211                                11122 222344789


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          430 DQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       430 s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      +..|++|+-|.-=| |+|.++.++.+++.+
T Consensus       285 des~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  285 DESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             cCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            99999999988765 899999999887764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.12  Score=54.44  Aligned_cols=127  Identities=15%  Similarity=0.165  Sum_probs=80.7

Q ss_pred             cCcEEEEEEcCCCCEEEEE-eCCeEEEE--ECCCCc---EEEEeeeCCCeEEEEEecCCcE-EEEEeCCCeEEEEECCCC
Q 037288          256 KCTVWTADFCTNPSQAVIG-TNLGAAMV--DMETGM---ASWVCRSKSDILAQQVIHSGNV-VLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~-s~~~i~vw--d~~~~~---~~~~~~~~~~V~~l~~~~~~~~-l~sg~~dg~i~iwd~~~~  328 (513)
                      ..++.+++.+.+-..+|+| .+|.|..+  |+...+   .......+.+|+.+++..++.. +++++ ...|.+|.+...
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr  203 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR  203 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC
Confidence            4578999999998899999 45556666  332221   2223336678999999998865 44443 467999998844


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      .  +....+..|...+.|..                                  +++....|++++ +..+.+||..  .
T Consensus       204 ~--p~~~~ld~~G~~lnCss----------------------------------~~~~t~qfIca~-~e~l~fY~sd--~  244 (933)
T KOG2114|consen  204 T--PSLKVLDNNGISLNCSS----------------------------------FSDGTYQFICAG-SEFLYFYDSD--G  244 (933)
T ss_pred             C--cceeeeccCCccceeee----------------------------------cCCCCccEEEec-CceEEEEcCC--C
Confidence            3  32444556655555533                                  333333356555 4579999986  5


Q ss_pred             ccceEEec-CCCCce
Q 037288          409 RGAVQSYE-GHVNSH  422 (513)
Q Consensus       409 ~~~~~~~~-~h~~~v  422 (513)
                      .++...|. ||....
T Consensus       245 ~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  245 RGPCFAFEVGEKKEM  259 (933)
T ss_pred             cceeeeecCCCeEEE
Confidence            55777777 776543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.22  E-value=0.0016  Score=68.17  Aligned_cols=95  Identities=13%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             CCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeE
Q 037288          385 LYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---------DCKLRIWSIRSGEL  455 (513)
Q Consensus       385 ~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---------Dg~v~vwd~~~~~~  455 (513)
                      .+++++.+|...|+|-+-|.+  +...++++.+|.+.+    .+|+-.|+.|+++|.         |.-|+|||++.-+.
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~--s~~~iht~~aHs~si----SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPN--SFETIHTFDAHSGSI----SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             ecCcEEEeecccceEEeecCC--cCceeeeeeccccce----eeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence            478899999999999999998  666999999999986    456677999999886         56789999999887


Q ss_pred             EEEecCCCCCeEEEEEcCC--CceEEeeCCCee
Q 037288          456 VFEDKFSNSVPSAVCWRTQ--RSMGPQIEGKIH  486 (513)
Q Consensus       456 ~~~~~~~~~~v~~v~~~p~--~~~~~t~~~~~~  486 (513)
                      +.-+..+.++ .-+.|+|.  ..+.+++..+..
T Consensus       259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~  290 (1118)
T KOG1275|consen  259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF  290 (1118)
T ss_pred             cCCcccccCc-hhhhhcccccceEEEEecccce
Confidence            7766665544 55777777  344444444433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.18  E-value=0.00013  Score=73.10  Aligned_cols=179  Identities=15%  Similarity=0.154  Sum_probs=112.1

Q ss_pred             CCeEEEEEecCC--cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-----------ee
Q 037288          297 SDILAQQVIHSG--NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-----------WF  359 (513)
Q Consensus       297 ~~V~~l~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-----------w~  359 (513)
                      ..+.|++++.+.  .++++|..+|.|-+-.++...... ....++|..++++++|++    .+++|.           ||
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccccc-ceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            346677766433  589999999999999888776432 446778899999999998    344443           88


Q ss_pred             cccCccccee--Eeec--CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcC-CC
Q 037288          360 ELKANIWPSH--TTFM--PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-SE  433 (513)
Q Consensus       360 ~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-~g  433 (513)
                      ....--.|..  .+..  .....++ ++..+.+++++|.....++++|+|  ... ....+.  +..+..  +.++| .+
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~-cwlrd~klvlaGm~sr~~~ifdlR--qs~~~~~svn--Tk~vqG--~tVdp~~~  208 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSV-CWLRDTKLVLAGMTSRSVHIFDLR--QSLDSVSSVN--TKYVQG--ITVDPFSP  208 (783)
T ss_pred             cccccCCCccccccccccccCcccc-ccccCcchhhcccccchhhhhhhh--hhhhhhhhhh--hhhccc--ceecCCCC
Confidence            8766222222  2211  2233344 444788888999988999999998  322 222221  112223  55677 67


Q ss_pred             CEEEEEeCCCcEEEEe-CCC-CeEEEEecCCCC----CeEEEEEcCC-CceEEeeCCC
Q 037288          434 RFVMSGGEDCKLRIWS-IRS-GELVFEDKFSNS----VPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       434 ~~l~sg~~Dg~v~vwd-~~~-~~~~~~~~~~~~----~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      +++++-. ||.|-+|| ... ..++..+.....    .+..++|+|. .-.+++..++
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd  265 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD  265 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence            7777655 99999999 333 233333333333    3889999998 3344444443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.013  Score=58.04  Aligned_cols=208  Identities=16%  Similarity=0.202  Sum_probs=119.2

Q ss_pred             CCCEEE-EEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-------EEEEEeCCCeEEEEECCCCccccccccc
Q 037288          267 NPSQAV-IGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-------VVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       267 ~g~~l~-s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      +.++|. .+. .++++-.|+++|+.+........|.-+.+.|+..       --+.|-.|..|+-||.|-..... +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k-l~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK-LAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce-eeee
Confidence            444444 333 3458888999999988888777788888888653       23566778899999998554321 1111


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                      .+|                             .........|..  ....-++++|+.+|.|++||--  ....-..+.+
T Consensus       423 q~k-----------------------------qy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri--~~~AKTAlPg  469 (644)
T KOG2395|consen  423 QSK-----------------------------QYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRI--GRRAKTALPG  469 (644)
T ss_pred             ecc-----------------------------ccccccccceee--ecCCceEEEeecCCcEEeehhh--hhhhhhcccc
Confidence            111                             111122223322  2345689999999999999952  2223445667


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Ce---EEEE--ecC-CCCCeEEEEEcCCCceEEeeCCCeeeee
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS--GE---LVFE--DKF-SNSVPSAVCWRTQRSMGPQIEGKIHEEF  489 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~--~~---~~~~--~~~-~~~~v~~v~~~p~~~~~~t~~~~~~~~~  489 (513)
                      ...+|..  +..+.+|+||++.+ +..+.+-++.-  +.   .+..  +.. ......-+...|  ..+|.....++...
T Consensus       470 LG~~I~h--VdvtadGKwil~Tc-~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~P--eHlA~~~~~~k~~a  544 (644)
T KOG2395|consen  470 LGDAIKH--VDVTADGKWILATC-KTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRP--EHLAGIDNEFKGTA  544 (644)
T ss_pred             cCCceee--EEeeccCcEEEEec-ccEEEEEEEecccCCccccccccccccccCCCceeeecCH--HHhhhhhhhccCce
Confidence            7788877  67778899998877 55666666532  11   1111  111 112344556666  34555554444322


Q ss_pred             ccCCcc---cceeeeeeccceeeeecC
Q 037288          490 DLGQRH---SWEAWIGTQEGLFRMNWS  513 (513)
Q Consensus       490 ~~~~~~---~~~~~~gs~~g~~~~~~~  513 (513)
                      .|.-..   -+..-|-+-.|-|-+.|+
T Consensus       545 ~Fs~nTg~g~qE~tIVtS~G~f~V~Wn  571 (644)
T KOG2395|consen  545 KFSFNTGIGAQERTIVTSTGPFSVSWN  571 (644)
T ss_pred             eEEEeccCCcceeeEEEeecceEEEEE
Confidence            222111   122334455666777674

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.25  Score=48.82  Aligned_cols=221  Identities=11%  Similarity=0.000  Sum_probs=112.8

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC------------------CCeEEEEEecCCcEEEEEeCC
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK------------------SDILAQQVIHSGNVVLCGFRN  317 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~------------------~~V~~l~~~~~~~~l~sg~~d  317 (513)
                      ...+....|||+|+.+|...++.|.+++..++....+....                  +.-.++-|+|||+.|+....|
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            56788999999999999999999999999888654433211                  123678899999887766443


Q ss_pred             -Ce-----------------------------------EEEEECCCCccccccccc---cccCcCeEEEeeCC--e-EEE
Q 037288          318 -GA-----------------------------------IVTVDVRKRQRGCSSRAG---RRHRIPYSRLQRND--R-VTN  355 (513)
Q Consensus       318 -g~-----------------------------------i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~~~--~-~~s  355 (513)
                       ..                                   +.|+|+.+++... +...   ..-...+..+.|.+  . ++.
T Consensus       122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~-~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE-LDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCE-E---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEE-eeeccccCCCccCcccceecCCCcEEEE
Confidence             22                                   2333443333211 1111   12233445555544  2 221


Q ss_pred             eE------------eecccCcccceeEeecCC---CceEEEEE-cCCCCEEEEEecCCeEEEEecCCCCccceEEecCCC
Q 037288          356 EQ------------WFELKANIWPSHTTFMPS---SISCLQSL-QLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHV  419 (513)
Q Consensus       356 ~~------------w~~~~~~~~~~~~~~~~~---~v~~~~~~-~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~  419 (513)
                      ..            ++...+............   .......+ ..+..+|.....||.-+||-+.. ..+....+....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~-~~~~~~~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL-DGGKPRQLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET-TSSEEEESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc-cccceeccccCc
Confidence            11            222222221111111111   11122233 33444555555788777766542 233455565444


Q ss_pred             CceeEEEEEEcCCCCEEE-EEeCC----CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          420 NSHTRIQLGVDQSERFVM-SGGED----CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~-sg~~D----g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                      -.|.. .+.++++++.|+ ++..+    ..|+.-++..+..+..+......-..+.|+|++.+++
T Consensus       280 ~~V~~-i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  280 WEVTS-ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             S-EEE-EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             eeecc-cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence            44533 367888877654 55542    3566667662334455554443336999999955443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.12  E-value=0.15  Score=50.95  Aligned_cols=180  Identities=11%  Similarity=0.064  Sum_probs=92.6

Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccc------cCcCeEEEeeCC-----------eEEEeE-
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRR------HRIPYSRLQRND-----------RVTNEQ-  357 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~v~~~~-----------~~~s~~-  357 (513)
                      .++|++++.+ |=-+++.|..+|.+.|.|+|.+..+. ...+..      ....++++.|.-           .++.|. 
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~-~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn  163 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIY-NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN  163 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEE-EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEe-eccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence            4679999986 45689999999999999999887654 222333      355788888864           455554 


Q ss_pred             ------eeccc-C-c-cc--cee-EeecCCCceEEEEEcCCC--------------------CEEEEEecCCeEEEEecC
Q 037288          358 ------WFELK-A-N-IW--PSH-TTFMPSSISCLQSLQLYD--------------------QYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       358 ------w~~~~-~-~-~~--~~~-~~~~~~~v~~~~~~~~~~--------------------~~l~s~s~dg~i~lwd~~  405 (513)
                            |.+.- . . ..  ... +..+.+.+..+..++.+.                    +.+++...+..++++...
T Consensus       164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~  243 (395)
T PF08596_consen  164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP  243 (395)
T ss_dssp             TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred             CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence                  33321 1 1 10  111 113455666665553221                    123334446789999986


Q ss_pred             CCCccc-eEEecCCCCceeEEEEEE-----cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC----CCeEEEEEcCCC
Q 037288          406 LTTRGA-VQSYEGHVNSHTRIQLGV-----DQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN----SVPSAVCWRTQR  475 (513)
Q Consensus       406 ~~~~~~-~~~~~~h~~~v~~~~~~~-----s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~----~~v~~v~~~p~~  475 (513)
                        ..+. -+.+   .....+..+.+     ...+..|++-..||.|+++++..-+.+.......    ..+...++.+++
T Consensus       244 --~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  244 --KSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             -----EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             --CCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence              3333 3333   22233333344     2356778888999999999999988888765431    123345556665


Q ss_pred             ceEEeeC
Q 037288          476 SMGPQIE  482 (513)
Q Consensus       476 ~~~~t~~  482 (513)
                      .++.-.+
T Consensus       319 di~~~~g  325 (395)
T PF08596_consen  319 DIFYWTG  325 (395)
T ss_dssp             -EEEE-S
T ss_pred             CEEEEeC
Confidence            5544443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.11  E-value=0.022  Score=57.50  Aligned_cols=177  Identities=10%  Similarity=-0.031  Sum_probs=95.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      +.........+.++|+|+++++++++...|+.....+...    .+.-....|.+ .+.+|+-..+++|.++.--+....
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc----cCceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence            4444456789999999999999999998788754433322    23345677887 445677767889999732222211


Q ss_pred             cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc
Q 037288          332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA  411 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~  411 (513)
                      .                                     .+..+..+..+  |.  |.+|+..+.+ .|.+||..  +...
T Consensus       103 k-------------------------------------~i~~~~~~~~I--f~--G~LL~~~~~~-~i~~yDw~--~~~~  138 (443)
T PF04053_consen  103 K-------------------------------------SIKLPFSVEKI--FG--GNLLGVKSSD-FICFYDWE--TGKL  138 (443)
T ss_dssp             ------------------------------------------SS-EEEE--E---SSSEEEEETT-EEEEE-TT--T--E
T ss_pred             e-------------------------------------EEcCCcccceE--Ec--CcEEEEECCC-CEEEEEhh--Hcce
Confidence            1                                     11111122222  32  7777777654 89999996  5557


Q ss_pred             eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------eEEEEecCCCCCeEEEEEcCCCceEEe
Q 037288          412 VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-----------ELVFEDKFSNSVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       412 ~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-----------~~~~~~~~~~~~v~~v~~~p~~~~~~t  480 (513)
                      +..+...  .|..  +.|+++|.+++-.+.| .+.|++....           ..+..+..-...|.+.+|..+-.++.|
T Consensus       139 i~~i~v~--~vk~--V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT  213 (443)
T PF04053_consen  139 IRRIDVS--AVKY--VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTT  213 (443)
T ss_dssp             EEEESS---E-EE--EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-
T ss_pred             eeEEecC--CCcE--EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEc
Confidence            8877733  2444  8999999999888755 6888775433           022222221456889999988333333


Q ss_pred             eC
Q 037288          481 IE  482 (513)
Q Consensus       481 ~~  482 (513)
                      ..
T Consensus       214 ~~  215 (443)
T PF04053_consen  214 SN  215 (443)
T ss_dssp             TT
T ss_pred             CC
Confidence            33

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.03  E-value=0.062  Score=48.67  Aligned_cols=123  Identities=12%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC
Q 037288          308 GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD  387 (513)
Q Consensus       308 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  387 (513)
                      ..+++.|+..+.+...|..++....  ...                                   ....+.+....  -|
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~W--e~i-----------------------------------lg~RiE~sa~v--vg   63 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIW--EAI-----------------------------------LGVRIECSAIV--VG   63 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEe--ehh-----------------------------------hCceeeeeeEE--EC
Confidence            3678888888888888887776422  000                                   01111221122  37


Q ss_pred             CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS  467 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~  467 (513)
                      ++++.|...|.+++.+..  ....+..+..- +.|.+ +...++++..+.+|+.|++.+.-|.++..++...+..++...
T Consensus        64 dfVV~GCy~g~lYfl~~~--tGs~~w~f~~~-~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~  139 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVK--TGSQIWNFVIL-ETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV  139 (354)
T ss_pred             CEEEEEEccCcEEEEEec--chhheeeeeeh-hhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceec
Confidence            789999999999999986  33355555422 22222 245678899999999999999999999999998776665555


Q ss_pred             EEEEcC
Q 037288          468 AVCWRT  473 (513)
Q Consensus       468 ~v~~~p  473 (513)
                      +-+..|
T Consensus       140 sP~i~~  145 (354)
T KOG4649|consen  140 SPVIAP  145 (354)
T ss_pred             cceecC
Confidence            555666

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.00  E-value=0.0075  Score=61.66  Aligned_cols=150  Identities=13%  Similarity=0.087  Sum_probs=102.5

Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCce
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSIS  378 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~  378 (513)
                      |.--+++..+.+++.|+.-|.+++|+-..+....    +                                .......++
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----~--------------------------------~~~~~~~~~   79 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----L--------------------------------KNEGATGIT   79 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhc----c--------------------------------cccCccceE
Confidence            4333455678899999999999999887665321    0                                011133455


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEecCCCCccc---eEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          379 CLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA---VQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       379 ~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~---~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      +...++++..++|.|+..|.|.++-+.......   +..+ +.|...|++  ++|++++..+++|...|+|.+-.+.+..
T Consensus        80 ~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTa--l~Ws~~~~k~ysGD~~Gkv~~~~L~s~~  157 (726)
T KOG3621|consen   80 CVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTA--LEWSKNGMKLYSGDSQGKVVLTELDSRQ  157 (726)
T ss_pred             EEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEE--EEecccccEEeecCCCceEEEEEechhh
Confidence            667888899999999999999999886311111   1122 236677777  9999999999999999999998887721


Q ss_pred             ----EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          455 ----LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       455 ----~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                          ..+.+..-++.|-.+.+.....+++|.-+-+-
T Consensus       158 ~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~L  193 (726)
T KOG3621|consen  158 AFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCIL  193 (726)
T ss_pred             hhccccceeeccCcceEEeecccceehHhhhhhhhe
Confidence                22223334677888888777666666554443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.97  E-value=0.3  Score=47.58  Aligned_cols=204  Identities=11%  Similarity=0.094  Sum_probs=117.1

Q ss_pred             eEEEEECCCCcEEEEee--eCCCeEEEEEec---C----CcEEEEEeC----------CCeEEEEECCCC-c---ccccc
Q 037288          278 GAAMVDMETGMASWVCR--SKSDILAQQVIH---S----GNVVLCGFR----------NGAIVTVDVRKR-Q---RGCSS  334 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~---~----~~~l~sg~~----------dg~i~iwd~~~~-~---~~~~~  334 (513)
                      .|++.|..+.+.+..+.  ....+++++...   +    ..+|++|+.          .|.|.++++... .   ... +
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~-~   81 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK-L   81 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE-E
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE-E
Confidence            47888888887766655  223355555432   2    467777753          289999999884 1   111 1


Q ss_pred             ccccccCcCeEEEeeCC-eEEEeE------eecccCc-ccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          335 RAGRRHRIPYSRLQRND-RVTNEQ------WFELKAN-IWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~-~~~s~~------w~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ..-....++|++++--. .++.+.      |+....+ +.+......+..+.++..+   ++++++|+....+.++..+.
T Consensus        82 i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence            22234578888887655 555554      6666655 5555555555566666554   67999999988999886542


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--eEEEEec-CCCCCeEEE---EEcC
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-------G--ELVFEDK-FSNSVPSAV---CWRT  473 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-------~--~~~~~~~-~~~~~v~~v---~~~p  473 (513)
                       ....+..+..........++.|-++++.++.+..+|.+.++....       +  ++..... +.+..|+++   +..|
T Consensus       159 -~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  159 -ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             -TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred             -cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence             122233333333344445567765667899999999999998752       2  2222222 224557777   4444


Q ss_pred             C-----C-----ceEEeeCCCee
Q 037288          474 Q-----R-----SMGPQIEGKIH  486 (513)
Q Consensus       474 ~-----~-----~~~~t~~~~~~  486 (513)
                      .     .     .+++|.++.+-
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EE
T ss_pred             cCCCCcccccceEEEEecCCEEE
Confidence            1     1     56666666655

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.96  E-value=0.021  Score=61.04  Aligned_cols=199  Identities=17%  Similarity=0.229  Sum_probs=112.3

Q ss_pred             CeEEEEECCCCcEEEEeeeCCCeEEEEEecC-------CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEee
Q 037288          277 LGAAMVDMETGMASWVCRSKSDILAQQVIHS-------GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR  349 (513)
Q Consensus       277 ~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~-------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  349 (513)
                      +.++-.|+++|+.+.....+..+.-..+.|+       ..-.+.|-.+..++.||.|-..... + .-..          
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~-v-~~~~----------  571 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL-V-DSQS----------  571 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce-e-eccc----------
Confidence            4588899999998887775444434445553       3356778888999999999654211 0 0000          


Q ss_pred             CCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE
Q 037288          350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV  429 (513)
Q Consensus       350 ~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~  429 (513)
                                         +.........|+ +-+ ...+||+|+.+|.||+||--  ....-..+.+-..+|..  +++
T Consensus       572 -------------------k~Y~~~~~Fs~~-aTt-~~G~iavgs~~G~IRLyd~~--g~~AKT~lp~lG~pI~~--iDv  626 (794)
T PF08553_consen  572 -------------------KQYSSKNNFSCF-ATT-EDGYIAVGSNKGDIRLYDRL--GKRAKTALPGLGDPIIG--IDV  626 (794)
T ss_pred             -------------------cccccCCCceEE-Eec-CCceEEEEeCCCcEEeeccc--chhhhhcCCCCCCCeeE--EEe
Confidence                               111112223333 333 45578999999999999942  12234445666778777  888


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCC--CC----eEEEE--ec-CCCCCeEEEEEcCCCceEE--eeCCCee-eeeccCC-ccc
Q 037288          430 DQSERFVMSGGEDCKLRIWSIR--SG----ELVFE--DK-FSNSVPSAVCWRTQRSMGP--QIEGKIH-EEFDLGQ-RHS  496 (513)
Q Consensus       430 s~~g~~l~sg~~Dg~v~vwd~~--~~----~~~~~--~~-~~~~~v~~v~~~p~~~~~~--t~~~~~~-~~~~~~~-~~~  496 (513)
                      +.||+||++.+ +..|.|+++.  +|    +.-+.  +. .......-+...|....++  ..+..+. ....|.. ...
T Consensus       627 t~DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~  705 (794)
T PF08553_consen  627 TADGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGK  705 (794)
T ss_pred             cCCCcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCC
Confidence            89999999887 4567777753  22    22111  21 1223355566666532222  1122222 1111221 122


Q ss_pred             ceeeeeeccceeeeecC
Q 037288          497 WEAWIGTQEGLFRMNWS  513 (513)
Q Consensus       497 ~~~~~gs~~g~~~~~~~  513 (513)
                      ...+|-+-.|-|.+.|+
T Consensus       706 ~E~~IvtstG~f~v~Wn  722 (794)
T PF08553_consen  706 QETSIVTSTGPFVVTWN  722 (794)
T ss_pred             ccceEEEeccCEEEEEE
Confidence            44566667777777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0039  Score=62.87  Aligned_cols=90  Identities=10%  Similarity=0.038  Sum_probs=73.5

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288          381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK  460 (513)
Q Consensus       381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~  460 (513)
                      +.|+|.-.++|++..+|.|-+..+.   .+.+.++.-|...++ .+++|.|||+.|+.|-.||+|++-|+.++..+....
T Consensus        26 ~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~-~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~  101 (665)
T KOG4640|consen   26 IEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVT-ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL  101 (665)
T ss_pred             EEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccc-eeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence            4678899999999999999998873   556777776666665 349999999999999999999999999999888732


Q ss_pred             -CCCCCeEEEEEcCC
Q 037288          461 -FSNSVPSAVCWRTQ  474 (513)
Q Consensus       461 -~~~~~v~~v~~~p~  474 (513)
                       .-..+|..+-|++.
T Consensus       102 ~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen  102 FSVETDISKGIWDRI  116 (665)
T ss_pred             cccccchheeecccc
Confidence             23567888888754

>smart00320 WD40 WD40 repeats

Probab=96.94  E-value=0.0022  Score=39.22  Aligned_cols=37  Identities=16%  Similarity=0.554  Sum_probs=31.6

Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      ++..+..|...+.+  +.|++++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTS--VAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeE--EEECCCCCEEEEecCCCeEEEcC
Confidence            45667778888766  88899999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.94  E-value=0.28  Score=46.43  Aligned_cols=186  Identities=13%  Similarity=0.040  Sum_probs=105.8

Q ss_pred             cEEEEEEcC-CCCEEEEEeC-Ce-EEEEECCCCcEEEEeeeCCC-e--EEEEEecCCcEEEEEeC-----CCeEEEEECC
Q 037288          258 TVWTADFCT-NPSQAVIGTN-LG-AAMVDMETGMASWVCRSKSD-I--LAQQVIHSGNVVLCGFR-----NGAIVTVDVR  326 (513)
Q Consensus       258 ~V~~~~~s~-~g~~l~s~s~-~~-i~vwd~~~~~~~~~~~~~~~-V--~~l~~~~~~~~l~sg~~-----dg~i~iwd~~  326 (513)
                      ....++.+| .+..++.+-. ++ ..+||..+++....+..... -  ---.|++||++|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            344677888 4445555533 34 78999999987766653222 1  23569999999998754     4899999998


Q ss_pred             C-CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE------------
Q 037288          327 K-RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS------------  393 (513)
Q Consensus       327 ~-~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~------------  393 (513)
                      . .+.   +..+..|-..-..+                                  .+.|+++.|+++            
T Consensus        86 ~~~~r---i~E~~s~GIGPHel----------------------------------~l~pDG~tLvVANGGI~Thpd~GR  128 (305)
T PF07433_consen   86 RGYRR---IGEFPSHGIGPHEL----------------------------------LLMPDGETLVVANGGIETHPDSGR  128 (305)
T ss_pred             CCcEE---EeEecCCCcChhhE----------------------------------EEcCCCCEEEEEcCCCccCcccCc
Confidence            2 222   33444443222222                                  233445444443            


Q ss_pred             ------ecCCeEEEEecCCCCccceEE--e--cCCCCceeEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCeEE
Q 037288          394 ------SMDGTVKLYDHRLTTRGAVQS--Y--EGHVNSHTRIQLGVDQSERFVMSGGEDCK-------LRIWSIRSGELV  456 (513)
Q Consensus       394 ------s~dg~i~lwd~~~~~~~~~~~--~--~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-------v~vwd~~~~~~~  456 (513)
                            +++-++.+.|.+  +...+..  +  ..|..++..  ++++++|..++..-..|.       |-+++-  ++.+
T Consensus       129 ~kLNl~tM~psL~~ld~~--sG~ll~q~~Lp~~~~~lSiRH--La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~  202 (305)
T PF07433_consen  129 AKLNLDTMQPSLVYLDAR--SGALLEQVELPPDLHQLSIRH--LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGAL  202 (305)
T ss_pred             eecChhhcCCceEEEecC--CCceeeeeecCccccccceee--EEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcc
Confidence                  445555555554  3333333  3  336666655  788888876555444432       334433  3323


Q ss_pred             EEecC-------CCCCeEEEEEcCCC-ceEEeeCCCee
Q 037288          457 FEDKF-------SNSVPSAVCWRTQR-SMGPQIEGKIH  486 (513)
Q Consensus       457 ~~~~~-------~~~~v~~v~~~p~~-~~~~t~~~~~~  486 (513)
                      ..+..       -..-+-+|++++++ .+.+|+-+.-.
T Consensus       203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            22221       13458899999985 56677666544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0049  Score=62.20  Aligned_cols=92  Identities=14%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeE-EEEEecCCcEEEEEeCCCeEEEEECCCCccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDIL-AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS  333 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  333 (513)
                      ..|.-+.|+|.-.++|.+..++ +.+..+. .+.++.+. +...++ +++|.|||++|+.|-.||+|++.|+..+.... 
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~-   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV-   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee-
Confidence            5788999999999999986655 8888777 67778887 566676 99999999999999999999999999887543 


Q ss_pred             cccccccCcCeEEEeeCC
Q 037288          334 SRAGRRHRIPYSRLQRND  351 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~  351 (513)
                       ........+|.++-|.+
T Consensus        99 -~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 -SFLFSVETDISKGIWDR  115 (665)
T ss_pred             -ccccccccchheeeccc
Confidence             11233455666666643

>smart00320 WD40 WD40 repeats

Probab=96.84  E-value=0.0039  Score=38.08  Aligned_cols=30  Identities=13%  Similarity=0.173  Sum_probs=27.8

Q ss_pred             eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      |...|.+++|++++..+++++.|+.+++||
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            667899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.70  E-value=0.21  Score=39.47  Aligned_cols=67  Identities=9%  Similarity=0.066  Sum_probs=47.2

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          259 VWTADFCT---NP-SQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       259 V~~~~~s~---~g-~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      |.++++..   +| ..|++|+++. |++|+-+  ..+..+.-.+.|+++.-... ..++.|..+|+|-+|+-...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce
Confidence            44555543   44 3667776665 9999764  45666666778888887655 66888999999999977443

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.62  E-value=0.065  Score=55.44  Aligned_cols=149  Identities=9%  Similarity=0.043  Sum_probs=88.6

Q ss_pred             CCCCEEEEEeCCeEEEEECCC-----CcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCccccccccccc
Q 037288          266 TNPSQAVIGTNLGAAMVDMET-----GMASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRR  339 (513)
Q Consensus       266 ~~g~~l~s~s~~~i~vwd~~~-----~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~  339 (513)
                      ++|++... .++.|.+.|..+     ...+..+.-......++++|||++++++ ..+.+|.|+|+...+... -..+ .
T Consensus       286 kdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~-~~~~-~  362 (635)
T PRK02888        286 KAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF-DGKI-K  362 (635)
T ss_pred             hCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh-hccC-C
Confidence            46665554 356799999998     4566667777778999999999866655 459999999998765311 0011 0


Q ss_pred             cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC------C--ccc
Q 037288          340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT------T--RGA  411 (513)
Q Consensus       340 h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~------~--~~~  411 (513)
                      .+..|.+                       .+........ ..|..+|+.+.+-..|..|..||+...      +  ...
T Consensus       363 ~~~~vva-----------------------evevGlGPLH-TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v  418 (635)
T PRK02888        363 PRDAVVA-----------------------EPELGLGPLH-TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPI  418 (635)
T ss_pred             ccceEEE-----------------------eeccCCCcce-EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcc
Confidence            0111100                       1111111111 367888888888888999999998620      0  123


Q ss_pred             eEEecCCCCceeE---EEEEEcCCCCEEEEEeC
Q 037288          412 VQSYEGHVNSHTR---IQLGVDQSERFVMSGGE  441 (513)
Q Consensus       412 ~~~~~~h~~~v~~---~~~~~s~~g~~l~sg~~  441 (513)
                      +..+.-|-++...   ..=.-.|+|+||++...
T Consensus       419 ~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        419 VQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             eecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            4444444333211   00122678899888643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.60  E-value=0.27  Score=49.88  Aligned_cols=146  Identities=10%  Similarity=0.035  Sum_probs=74.9

Q ss_pred             CCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEE
Q 037288          268 PSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL  347 (513)
Q Consensus       268 g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v  347 (513)
                      |.+|...+++.|.+||.++++.+..+.... |..+.|+++|.+++..+.+ .+.+++........  ..-.|....+.. 
T Consensus       117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~--~~~~g~e~~f~~-  191 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA--IPEEGVEDAFEL-  191 (443)
T ss_dssp             SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH--BTTTB-GGGEEE-
T ss_pred             CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhccc--ccccCchhceEE-
Confidence            888888888899999999999988887554 9999999999999888755 67777654331000  000000000100 


Q ss_pred             eeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEE
Q 037288          348 QRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL  427 (513)
Q Consensus       348 ~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~  427 (513)
                                            .......|.+..|.   +..|+..+.. .++.  +...+.+.+..+.   .+++.  +
T Consensus       192 ----------------------~~E~~~~IkSg~W~---~d~fiYtT~~-~lkY--l~~Ge~~~i~~ld---~~~yl--l  238 (443)
T PF04053_consen  192 ----------------------IHEISERIKSGCWV---EDCFIYTTSN-HLKY--LVNGETGIIAHLD---KPLYL--L  238 (443)
T ss_dssp             ----------------------EEEE-S--SEEEEE---TTEEEEE-TT-EEEE--EETTEEEEEEE-S---S--EE--E
T ss_pred             ----------------------EEEecceeEEEEEE---cCEEEEEcCC-eEEE--EEcCCcceEEEcC---CceEE--E
Confidence                                  11113445554443   3366666655 6665  3211222444443   34444  6


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          428 GVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       428 ~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      .+.++.+.|+....|+.|..+.+.
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEccCCEEEEEECCCCEEEEEEC
Confidence            666777788888888888887664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.59  E-value=0.57  Score=44.99  Aligned_cols=101  Identities=11%  Similarity=0.126  Sum_probs=68.1

Q ss_pred             EEEcCCCCEEEEEec-CCeEEEEecCCCCc---cc--eEEecCCCCceeEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCC
Q 037288          381 QSLQLYDQYFLASSM-DGTVKLYDHRLTTR---GA--VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC-KLRIWSIRSG  453 (513)
Q Consensus       381 ~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~---~~--~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-~v~vwd~~~~  453 (513)
                      ++|+|+++.|..+.. .+.|.-|++.....   ..  ...+..+.+..-.  ++++.+|.+-+++..+| .|.+|+.. |
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG--~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG--MAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc--eEEeCCCCEEEecccCCceEEEECCC-C
Confidence            589999987777665 47888887752001   11  1122222222223  66778888776555554 89999988 9


Q ss_pred             eEEEEecCCCCCeEEEEEcCC--CceEEeeCCC
Q 037288          454 ELVFEDKFSNSVPSAVCWRTQ--RSMGPQIEGK  484 (513)
Q Consensus       454 ~~~~~~~~~~~~v~~v~~~p~--~~~~~t~~~~  484 (513)
                      +++..+......+++++|--.  ..+++|+...
T Consensus       245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            999998877677899999764  6777777665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.39  E-value=0.23  Score=50.03  Aligned_cols=138  Identities=13%  Similarity=0.139  Sum_probs=83.0

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR  346 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  346 (513)
                      ++.+++.+.++.+..+|..+|+.++....... ..+  ..++..|+.++.+|.+..+|..+++.......+. +  .   
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~--~---  326 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-H--R---  326 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC-C--C---
Confidence            45555555677799999999998886653221 122  2246677788899999999998876422000000 0  0   


Q ss_pred             EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEE
Q 037288          347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ  426 (513)
Q Consensus       347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~  426 (513)
                                               ...++     .+  .+.+++.++.||.+.+.|..  +...+..++-....+..-.
T Consensus       327 -------------------------~~~sp-----~v--~~g~l~v~~~~G~l~~ld~~--tG~~~~~~~~~~~~~~s~P  372 (394)
T PRK11138        327 -------------------------LLTAP-----VL--YNGYLVVGDSEGYLHWINRE--DGRFVAQQKVDSSGFLSEP  372 (394)
T ss_pred             -------------------------cccCC-----EE--ECCEEEEEeCCCEEEEEECC--CCCEEEEEEcCCCcceeCC
Confidence                                     00000     11  25677888999999999986  4445555443322222211


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          427 LGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       427 ~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      + +  .+..|+.++.||.|+.+++
T Consensus       373 ~-~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        373 V-V--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             E-E--ECCEEEEEeCCceEEEEeC
Confidence            1 1  2557888999999988764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.34  E-value=0.8  Score=41.76  Aligned_cols=109  Identities=19%  Similarity=0.283  Sum_probs=75.7

Q ss_pred             CCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288          268 PSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR  346 (513)
Q Consensus       268 g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  346 (513)
                      ..+++.|+..+ +...|..+|...+.......+.+-+.- -|++++.|+..|.+++.+.+++....              
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w--------------   87 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW--------------   87 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee--------------
Confidence            34666777655 677888888887765555555443332 47789999999999999999986432              


Q ss_pred             EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec
Q 037288          347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE  416 (513)
Q Consensus       347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~  416 (513)
                                             .+..-+.|.+.....+++..+..|+.|++.+..|.+  ..+++...+
T Consensus        88 -----------------------~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~--~~~cVyksk  132 (354)
T KOG4649|consen   88 -----------------------NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK--TYGCVYKSK  132 (354)
T ss_pred             -----------------------eeeehhhhccceEEcCCCceEEEecCCCcEEEeccc--ccceEEecc
Confidence                                   111122233334566789999999999999999997  555665544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.28  E-value=0.061  Score=57.65  Aligned_cols=92  Identities=12%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             EEEEecCCeEEEEecCCCCccceE----EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCC
Q 037288          390 FLASSMDGTVKLYDHRLTTRGAVQ----SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNS  464 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~~~~----~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~  464 (513)
                      -..|-.+..+..||.|......+.    .|. ......+  ++-+.+| +||.|+.+|.||+|| +.|+...+ +.+-+.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~-~~~~Fs~--~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~  619 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS-SKNNFSC--FATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGD  619 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccc-cCCCceE--EEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCC
Confidence            455667789999999953322221    121 1222233  5545555 799999999999999 45544444 456688


Q ss_pred             CeEEEEEcCCC-ceEEeeCCCee
Q 037288          465 VPSAVCWRTQR-SMGPQIEGKIH  486 (513)
Q Consensus       465 ~v~~v~~~p~~-~~~~t~~~~~~  486 (513)
                      ||.+|..+.++ .++||+..-+.
T Consensus       620 pI~~iDvt~DGkwilaTc~tyLl  642 (794)
T PF08553_consen  620 PIIGIDVTADGKWILATCKTYLL  642 (794)
T ss_pred             CeeEEEecCCCcEEEEeecceEE
Confidence            99999999995 56666655444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.25  E-value=0.01  Score=61.86  Aligned_cols=107  Identities=10%  Similarity=0.087  Sum_probs=76.6

Q ss_pred             EEEEcCCCCEEEEEe-----CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          261 TADFCTNPSQAVIGT-----NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s-----~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      -..|+|...++|+++     .+.|.|+ .++|++..-...+-.+++++|+|..-+|+.|=.-|.+.+|.....+...   
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht---   95 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT---   95 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee---
Confidence            457888888888764     3446666 3445544333333446789999999999999899999999887665322   


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      ....|..+|..+                                  .|+++|..++++..-|.|.+|.+.
T Consensus        96 v~~th~a~i~~l----------------------------------~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGL----------------------------------DWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeE----------------------------------EecCCCCeEEEcCCCceeEEEEee
Confidence            334455555553                                  456799999999999999999875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.21  E-value=0.014  Score=62.53  Aligned_cols=79  Identities=19%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             CCCEEEEEeCCe-EEEEECCCCcE--EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC
Q 037288          267 NPSQAVIGTNLG-AAMVDMETGMA--SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP  343 (513)
Q Consensus       267 ~g~~l~s~s~~~-i~vwd~~~~~~--~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  343 (513)
                      .+..++.|++.+ +...|..+.-.  .+-....++|++++|+.+|.+++.|-.+|.|.+||+..++.   ++.+..|..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~---l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI---LKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc---eeeeeecCCc
Confidence            555778787665 77777654311  11122567899999999999999999999999999998776   4466767666


Q ss_pred             eEEEe
Q 037288          344 YSRLQ  348 (513)
Q Consensus       344 v~~v~  348 (513)
                      ...+-
T Consensus       175 ~t~vi  179 (1206)
T KOG2079|consen  175 VTGVI  179 (1206)
T ss_pred             cceEE
Confidence            66543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.16  E-value=0.022  Score=50.59  Aligned_cols=142  Identities=15%  Similarity=0.125  Sum_probs=76.2

Q ss_pred             EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEe-cCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288          270 QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVI-HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ  348 (513)
Q Consensus       270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  348 (513)
                      ++++.+++.|+-+++..-+..  .+....+.+..-- .-+.-+++|+.+|.|.+|.........         .      
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---------d------   95 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS---------D------   95 (238)
T ss_pred             hccccCCcccccchhhhhhhh--hhhhhhhhcceeecccCceEEeecccceEEEecCCccchHH---------H------
Confidence            445556666666665432211  0111112222111 234679999999999999887332111         0      


Q ss_pred             eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCC-CceeEEEE
Q 037288          349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHV-NSHTRIQL  427 (513)
Q Consensus       349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~  427 (513)
                                          ........+.+++..-.++.+..+++.||.|+.|++.  ....+.....|. .+...  +
T Consensus        96 --------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~--p~k~~g~~g~h~~~~~e~--~  151 (238)
T KOG2444|consen   96 --------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK--PNKVLGYVGQHNFESGEE--L  151 (238)
T ss_pred             --------------------hhhcccccceeccccccccceeEEeccCCceeeeccc--cCceeeeeccccCCCcce--e
Confidence                                0111122333433444456688999999999999985  222332223333 22222  3


Q ss_pred             EEcCCCCEEEEE--eCCCcEEEEeCCC
Q 037288          428 GVDQSERFVMSG--GEDCKLRIWSIRS  452 (513)
Q Consensus       428 ~~s~~g~~l~sg--~~Dg~v~vwd~~~  452 (513)
                      .....+++|+.+  |.|..++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhh
Confidence            444556667766  7777777777653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=1.7  Score=43.51  Aligned_cols=174  Identities=11%  Similarity=0.050  Sum_probs=113.3

Q ss_pred             EEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC---CCeEEEEECCCCccccc
Q 037288          259 VWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR---NGAIVTVDVRKRQRGCS  333 (513)
Q Consensus       259 V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~  333 (513)
                      -..++.++.+..+. .. .++.|.+.|..+........-......+++++++..++.+..   ++++.+.|..+..... 
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-
Confidence            34677778777444 33 356799999888877776665557789999999977766655   6888888887766432 


Q ss_pred             cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccce
Q 037288          334 SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~  412 (513)
                        .                                  ......- .-+.++|+|+.+.++. .++.|.+.|..   ...+
T Consensus       155 --~----------------------------------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~---~~~v  194 (381)
T COG3391         155 --T----------------------------------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS---GNSV  194 (381)
T ss_pred             --E----------------------------------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC---Ccce
Confidence              1                                  1110001 1257888999666655 68899999974   3222


Q ss_pred             EE------ecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCC-CeEEEEEcCCCc
Q 037288          413 QS------YEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNS-VPSAVCWRTQRS  476 (513)
Q Consensus       413 ~~------~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~-~v~~v~~~p~~~  476 (513)
                      ..      ...+..+   ..+.++|+|..+......   +.+...|..++........-.. ....+..+|++.
T Consensus       195 ~~~~~~~~~~~~~~P---~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~  265 (381)
T COG3391         195 VRGSVGSLVGVGTGP---AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGK  265 (381)
T ss_pred             eccccccccccCCCC---ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence            21      2222222   337889999977665543   5899999999887776211111 456788888843

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.14  E-value=0.34  Score=53.21  Aligned_cols=152  Identities=13%  Similarity=0.192  Sum_probs=93.7

Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS  375 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~  375 (513)
                      ...|.++.|..+.+-++.+..+|.|.+-|..+.....                                     .-....
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------------------------vg~vd~  110 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-------------------------------------VGNVDN  110 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-------------------------------------eeeccC
Confidence            3579999999999999999999999999887665321                                     111122


Q ss_pred             CceEEEEEcCCCCEEEEEecCCeEEEEecCC--CCccce-------------------EEecCCCC--------------
Q 037288          376 SISCLQSLQLYDQYFLASSMDGTVKLYDHRL--TTRGAV-------------------QSYEGHVN--------------  420 (513)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~--~~~~~~-------------------~~~~~h~~--------------  420 (513)
                      +|.+ ..|+|+++.++..+.++++.+-+-..  ....++                   ..|.|..+              
T Consensus       111 GI~a-aswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~  189 (1265)
T KOG1920|consen  111 GISA-ASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL  189 (1265)
T ss_pred             ceEE-EeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence            3333 46778888888887777766543210  000000                   11211111              


Q ss_pred             c---e--eEEEEEEcCCCCEEEEEe----CC-CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          421 S---H--TRIQLGVDQSERFVMSGG----ED-CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       421 ~---v--~~~~~~~s~~g~~l~sg~----~D-g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .   +  ....++|--||.++++..    .+ ..|+|||-. |.+-..-......-.+++|-|.+..+|+...+-.
T Consensus       190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s  264 (1265)
T KOG1920|consen  190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS  264 (1265)
T ss_pred             cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC
Confidence            0   0  002277888999988732    24 789999976 5554443333444568999999888888766544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.12  E-value=0.18  Score=50.94  Aligned_cols=68  Identities=10%  Similarity=0.048  Sum_probs=44.6

Q ss_pred             CcEEEEEEcCCCCEEEEEe--CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEE
Q 037288          257 CTVWTADFCTNPSQAVIGT--NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVD  324 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s--~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd  324 (513)
                      ..-..-+|+|||+.|+.+.  ++.  |.+.|+.++....+....+.-..=.|+|||+ ++++.++.|.-.||-
T Consensus       238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~  310 (425)
T COG0823         238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL  310 (425)
T ss_pred             CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence            3445678999999988664  333  7888998887555333333334667899995 555666666555543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.90  E-value=1.6  Score=41.29  Aligned_cols=134  Identities=15%  Similarity=0.118  Sum_probs=82.4

Q ss_pred             CCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc---------
Q 037288          266 TNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA---------  336 (513)
Q Consensus       266 ~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---------  336 (513)
                      ..++.|+.|.++++.++++..............|..+...++-+.+++-+ |+.+.++++..-.... ...         
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~-~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS-TSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc-cccccccccccc
Confidence            36778888998889999994333333333444599999998877666654 5999999987654322 000         


Q ss_pred             ---ccccCcCeEEEe-eCC-----eEEEeE--------eecccCcc-cceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          337 ---GRRHRIPYSRLQ-RND-----RVTNEQ--------WFELKANI-WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       337 ---~~~h~~~v~~v~-~~~-----~~~s~~--------w~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                         .......+...+ -..     .++...        |....... ...+.+..++.+..+.++   ++.++.|..+ .
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~-~  158 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSK-G  158 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCC-c
Confidence               011122233222 001     222221        65544444 566778888888888666   6778888755 4


Q ss_pred             EEEEecC
Q 037288          399 VKLYDHR  405 (513)
Q Consensus       399 i~lwd~~  405 (513)
                      ..+.|+.
T Consensus       159 f~~idl~  165 (275)
T PF00780_consen  159 FYLIDLN  165 (275)
T ss_pred             eEEEecC
Confidence            7788886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.54  E-value=1.3  Score=43.08  Aligned_cols=137  Identities=12%  Similarity=0.071  Sum_probs=80.0

Q ss_pred             ccEEEEecCCC-CCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc-EEEEeeeCC--Ce
Q 037288          224 GSIYALNLDNP-LDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM-ASWVCRSKS--DI  299 (513)
Q Consensus       224 g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~-~~~~~~~~~--~V  299 (513)
                      |.+.++.+... ....+      . ....-....++|++++-- ++ .++++.+..|.+|++...+ ......+..  .+
T Consensus        62 Gri~v~~i~~~~~~~~~------l-~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i  132 (321)
T PF03178_consen   62 GRILVFEISESPENNFK------L-KLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYI  132 (321)
T ss_dssp             EEEEEEEECSS-----E------E-EEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred             cEEEEEEEEcccccceE------E-EEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEE
Confidence            88888887753 10000      0 111223457889998876 34 4888888899999998877 555444444  45


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC  379 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~  379 (513)
                      .++..  .+++|+.|.....+.++..+.....  +..+.                               .-..+..+++
T Consensus       133 ~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~--l~~va-------------------------------~d~~~~~v~~  177 (321)
T PF03178_consen  133 TSLSV--FKNYILVGDAMKSVSLLRYDEENNK--LILVA-------------------------------RDYQPRWVTA  177 (321)
T ss_dssp             EEEEE--ETTEEEEEESSSSEEEEEEETTTE---EEEEE-------------------------------EESS-BEEEE
T ss_pred             EEEec--cccEEEEEEcccCEEEEEEEccCCE--EEEEE-------------------------------ecCCCccEEE
Confidence            55554  4779999998888888755442210  11111                               1111222333


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          380 LQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       380 ~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      +..+. +++.++++..+|.+.++...
T Consensus       178 ~~~l~-d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  178 AEFLV-DEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEec-CCcEEEEEcCCCeEEEEEEC
Confidence            33442 33689999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.49  E-value=0.051  Score=35.75  Aligned_cols=32  Identities=9%  Similarity=0.176  Sum_probs=28.9

Q ss_pred             eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ....|.+++|+|...+||.|+.||.|.++.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34569999999999999999999999999994

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=0.043  Score=59.04  Aligned_cols=95  Identities=16%  Similarity=0.207  Sum_probs=67.7

Q ss_pred             CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP  466 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v  466 (513)
                      +-.++.|+..|.|-..|.+.. -++...-+.-.++|++  ++|+.+|+.++.|-.+|.|.+||+..+++++.+..+..+.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vts--vafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTS--VAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCccee--eEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            456888998999999998521 1122222333556766  9999999999999999999999999999999988777766


Q ss_pred             EEEEE---cCCCc-eEEeeCCC
Q 037288          467 SAVCW---RTQRS-MGPQIEGK  484 (513)
Q Consensus       467 ~~v~~---~p~~~-~~~t~~~~  484 (513)
                      +++-+   ..++. ++.+..++
T Consensus       176 t~vi~v~~t~~nS~llt~D~~G  197 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGG  197 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCC
Confidence            55443   33433 44444444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.01  E-value=3  Score=38.74  Aligned_cols=187  Identities=10%  Similarity=0.019  Sum_probs=103.7

Q ss_pred             eccccCc--EEEEEEcCCCCEEEEEe-CC--eEEEEECCCCcEEEEeeeCCCe--EEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          252 VASFKCT--VWTADFCTNPSQAVIGT-NL--GAAMVDMETGMASWVCRSKSDI--LAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       252 ~~~h~~~--V~~~~~s~~g~~l~s~s-~~--~i~vwd~~~~~~~~~~~~~~~V--~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      ...|+..  ...+.|..+|.++-+.+ -+  .|+.+|+.+++......-....  -.+... ++.+..-.=.++...+||
T Consensus        38 ~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd  116 (264)
T PF05096_consen   38 TYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYD  116 (264)
T ss_dssp             EEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEE
T ss_pred             ECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEc
Confidence            3455544  34577766777766543 34  3999999999987766654443  333333 223333334689999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                      ..+-+...   +                                  +..+...-.+   ..+++.|+.+.....+.++|.
T Consensus       117 ~~tl~~~~---~----------------------------------~~y~~EGWGL---t~dg~~Li~SDGS~~L~~~dP  156 (264)
T PF05096_consen  117 PNTLKKIG---T----------------------------------FPYPGEGWGL---TSDGKRLIMSDGSSRLYFLDP  156 (264)
T ss_dssp             TTTTEEEE---E----------------------------------EE-SSS--EE---EECSSCEEEE-SSSEEEEE-T
T ss_pred             cccceEEE---E----------------------------------EecCCcceEE---EcCCCEEEEECCccceEEECC
Confidence            98765432   1                                  1111111121   136777887777788999997


Q ss_pred             CCCCccceEEecCC--CCceeEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC------------C---CCCe
Q 037288          405 RLTTRGAVQSYEGH--VNSHTRI-QLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF------------S---NSVP  466 (513)
Q Consensus       405 ~~~~~~~~~~~~~h--~~~v~~~-~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~------------~---~~~v  466 (513)
                      .  +.....++...  ..++..+ -+-+- +|...|=.=....|..-|..+|+.+..+..            .   ....
T Consensus       157 ~--~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL  233 (264)
T PF05096_consen  157 E--TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL  233 (264)
T ss_dssp             T--T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred             c--ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence            5  33334333322  1222111 12332 465555555567788889999998886411            1   3568


Q ss_pred             EEEEEcCC-CceEEeeC
Q 037288          467 SAVCWRTQ-RSMGPQIE  482 (513)
Q Consensus       467 ~~v~~~p~-~~~~~t~~  482 (513)
                      +.+||.|. ..+++|+-
T Consensus       234 NGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  234 NGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             EeEeEeCCCCEEEEEeC
Confidence            99999988 67777753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.99  E-value=1.8  Score=43.88  Aligned_cols=143  Identities=10%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             EEEEecCCcEEEEE-eCC----CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC
Q 037288          301 AQQVIHSGNVVLCG-FRN----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS  375 (513)
Q Consensus       301 ~l~~~~~~~~l~sg-~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~  375 (513)
                      ...++|+|++++.+ +..    ..++++|+.+++...   .      .+..                           . 
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---d------~i~~---------------------------~-  170 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---D------GIEN---------------------------P-  170 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---E------EEEE---------------------------E-
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---C------cccc---------------------------c-
Confidence            56678888776655 333    359999999886432   0      0000                           0 


Q ss_pred             CceEEEEEcCCCCEEEEEecCC-----------eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---
Q 037288          376 SISCLQSLQLYDQYFLASSMDG-----------TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---  441 (513)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~s~dg-----------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---  441 (513)
                      .... +.|.++++.|+....+.           .|+.|.+..........|+........+.+..++|+++|+..+.   
T Consensus       171 ~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~  249 (414)
T PF02897_consen  171 KFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT  249 (414)
T ss_dssp             ESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred             ccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc
Confidence            0011 35667777776665433           37788876322223455665555443455888999999775332   


Q ss_pred             C-CcEEEEeCCCC-----eEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          442 D-CKLRIWSIRSG-----ELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       442 D-g~v~vwd~~~~-----~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      + ..+++.++..+     +.........+....+....+..++.|.
T Consensus       250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn  295 (414)
T PF02897_consen  250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTN  295 (414)
T ss_dssp             SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-
T ss_pred             cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeC
Confidence            2 45788888875     3333333333334445444333444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02713 hypothetical protein; Provisional

Probab=94.84  E-value=0.85  Score=48.12  Aligned_cols=70  Identities=7%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             CCCEEEEEecC------CeEEEEecCC-CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEE
Q 037288          386 YDQYFLASSMD------GTVKLYDHRL-TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC--KLRIWSIRSGELV  456 (513)
Q Consensus       386 ~~~~l~s~s~d------g~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg--~v~vwd~~~~~~~  456 (513)
                      +++..+.|+.+      ..+..||... .....+..+.........  +.  -+|++.+.||.||  ++-.||..+.+-.
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~--~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT--IL--HDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee--EE--ECCEEEEEeeecceeehhhcCccccccc
Confidence            57777777754      2467899873 233344444332222111  22  2588889999988  7788888777654


Q ss_pred             EEe
Q 037288          457 FED  459 (513)
Q Consensus       457 ~~~  459 (513)
                      ...
T Consensus       539 ~~~  541 (557)
T PHA02713        539 HIC  541 (557)
T ss_pred             chh
Confidence            443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=5.2  Score=39.97  Aligned_cols=180  Identities=9%  Similarity=0.001  Sum_probs=110.3

Q ss_pred             cEEEEEEcCCCCEEEEE-e---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEECCCCcccc
Q 037288          258 TVWTADFCTNPSQAVIG-T---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~  332 (513)
                      .-..+++++++..+..+ .   ++.+.+.|..++..+....-...-..+++.|+|+.++... .++.|.+.|....... 
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~-  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV-  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCccee-
Confidence            55688999998766544 3   3558888999888777644322228999999998665554 7899999996655421 


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCc
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTR  409 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~  409 (513)
                         .  .+....                          . .....-+...+++++.++.+....   +.+...|..  ..
T Consensus       196 ---~--~~~~~~--------------------------~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~--~~  241 (381)
T COG3391         196 ---R--GSVGSL--------------------------V-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA--TG  241 (381)
T ss_pred             ---c--cccccc--------------------------c-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC--Cc
Confidence               0  000000                          0 000111124677888866655544   588888885  32


Q ss_pred             cceEE-ecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCC---CCeEEEEEcCC
Q 037288          410 GAVQS-YEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSN---SVPSAVCWRTQ  474 (513)
Q Consensus       410 ~~~~~-~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~---~~v~~v~~~p~  474 (513)
                      ..... +..-...  ...+.++|+|+++.+.. ..+.+.+-|..+...........   ..+..+++.+.
T Consensus       242 ~v~~~~~~~~~~~--~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         242 NVTATDLPVGSGA--PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             eEEEeccccccCC--CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            22222 1211111  12367899999988874 45889999999988877654322   23556666554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.68  E-value=8.1  Score=42.13  Aligned_cols=184  Identities=16%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR  346 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  346 (513)
                      .++.|+-...+.|++++-. + ..........++....+.+...++.++.++.+...++..... . ...-..-...|.|
T Consensus       460 ~g~~lvQvTs~~iRl~ss~-~-~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~-e~~~~~~e~evaC  535 (1096)
T KOG1897|consen  460 NGNQLVQVTSNSIRLVSSA-G-LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-R-EVSHKEFEYEVAC  535 (1096)
T ss_pred             CCceEEEEecccEEEEcch-h-hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccce-e-eeeeheecceeEE
Confidence            4445555555667777655 1 222233445555555555555666666777777777765541 1 1122233678999


Q ss_pred             EeeCC---------eEEEeEeecccCccc--ceeEe------e---cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          347 LQRND---------RVTNEQWFELKANIW--PSHTT------F---MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       347 v~~~~---------~~~s~~w~~~~~~~~--~~~~~------~---~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ++++|         .++.|.|+.....+.  |....      .   .|.++.- ..+-.+..+|+++..||.+.-|-+..
T Consensus       536 LDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~-~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  536 LDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILL-TTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             EecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheee-EEeeccceEEEEEcCCceEEEEEEEc
Confidence            99987         455666875433221  11111      0   1112222 23444578999999999998877652


Q ss_pred             CCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288          407 TTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE  458 (513)
Q Consensus       407 ~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~  458 (513)
                      ....  ..+.-.-...++.-  -.|+..++.-+-+..|+-..+|. .+++++.+
T Consensus       615 ~tg~lsd~Kk~~lGt~P~~L--r~f~sk~~t~vfa~sdrP~viY~-~n~kLv~s  665 (1096)
T KOG1897|consen  615 NTGQLSDRKKVTLGTQPISL--RTFSSKSRTAVFALSDRPTVIYS-SNGKLVYS  665 (1096)
T ss_pred             ccceEccccccccCCCCcEE--EEEeeCCceEEEEeCCCCEEEEe-cCCcEEEe
Confidence            2211  11111112334433  34555444444445577777777 35565554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.67  E-value=6.6  Score=41.10  Aligned_cols=54  Identities=19%  Similarity=0.260  Sum_probs=39.1

Q ss_pred             eEEEEECCCCcEEEEeee-CCCe---------EEEEEecCCc---EEEEEeCCCeEEEEECCCCccc
Q 037288          278 GAAMVDMETGMASWVCRS-KSDI---------LAQQVIHSGN---VVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~-~~~V---------~~l~~~~~~~---~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      .|...|++||+..+.++. +.++         .-+....+|.   .++.+.++|.+++.|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            477789999999988872 1111         2222324665   8889999999999999998763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.66  E-value=5.6  Score=40.22  Aligned_cols=213  Identities=9%  Similarity=0.038  Sum_probs=100.8

Q ss_pred             cEEEEEEcCCCCEEEEE-e---CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC-----------eE
Q 037288          258 TVWTADFCTNPSQAVIG-T---NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG-----------AI  320 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s---~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg-----------~i  320 (513)
                      .+....++|+|+++|.+ +   ++  .++++|+.+|+.+.-.-.......+.|.+++..|+....+.           .|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            44578899999999865 2   22  28999999997554221111223499999987665554332           47


Q ss_pred             EEEECCCCccccccccccccCcC--eEEEeeCC---eEE-EeE--------eecccCc-----ccceeEeecCCCceEEE
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIP--YSRLQRND---RVT-NEQ--------WFELKAN-----IWPSHTTFMPSSISCLQ  381 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~~~---~~~-s~~--------w~~~~~~-----~~~~~~~~~~~~v~~~~  381 (513)
                      +.|++.+..... ...+.+....  ...+..++   .++ ...        |-+....     ..+.........+...+
T Consensus       205 ~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  205 YRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            888887765431 1233333322  45566665   222 111        2222221     11122222223333332


Q ss_pred             EEcCCCCEEEEEe---cCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEE-EeCCC--cEEEEeCCCCe
Q 037288          382 SLQLYDQYFLASS---MDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMS-GGEDC--KLRIWSIRSGE  454 (513)
Q Consensus       382 ~~~~~~~~l~s~s---~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~s-g~~Dg--~v~vwd~~~~~  454 (513)
                      ... ++.+++...   .++.|...++...... ....+-.|...+...  .+...+++|+. --.++  .|+++++..+.
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~--~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE--DVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE--EEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE--EEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            222 333444332   2456666677532221 122455565544442  33334555544 44444  58889988444


Q ss_pred             EEEEecC-CCCCeEEEEEcCC
Q 037288          455 LVFEDKF-SNSVPSAVCWRTQ  474 (513)
Q Consensus       455 ~~~~~~~-~~~~v~~v~~~p~  474 (513)
                      ....+.. ..+.|..+...++
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~  381 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFD  381 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT
T ss_pred             EEeeecCCcceEEeccCCCCC
Confidence            4444332 2333555554444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.66  E-value=4.9  Score=39.52  Aligned_cols=215  Identities=8%  Similarity=-0.044  Sum_probs=94.6

Q ss_pred             EEcCCCCEEEEEeC--C--eEEEEECCCCcEEEEeeeCCC-eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          263 DFCTNPSQAVIGTN--L--GAAMVDMETGMASWVCRSKSD-ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       263 ~~s~~g~~l~s~s~--~--~i~vwd~~~~~~~~~~~~~~~-V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      +|.++|+.|+.+++  +  .+.+.|+.+++...+...... .....++++.+.++--..+..|+-.|+.+.+... +  +
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-v--y  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV-V--Y  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE-E--E
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE-E--E
Confidence            45778987776553  2  388899999998887775433 3345567887766555455688889999887543 2  2


Q ss_pred             cccCcCeEEEeeC---C-eEEEeE------e------------------------ecccCcccceeEeecCCCceEEEEE
Q 037288          338 RRHRIPYSRLQRN---D-RVTNEQ------W------------------------FELKANIWPSHTTFMPSSISCLQSL  383 (513)
Q Consensus       338 ~~h~~~v~~v~~~---~-~~~s~~------w------------------------~~~~~~~~~~~~~~~~~~v~~~~~~  383 (513)
                      ......+-...|.   . ..+.+.      |                        ++..++..  ..+....-+..+...
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~--~v~~~~~wlgH~~fs  196 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK--VVFEDTDWLGHVQFS  196 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE--EEEEESS-EEEEEEE
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee--EEEecCccccCcccC
Confidence            2222323222331   1 223222      1                        11111110  011111122333333


Q ss_pred             cCCCCEEEEEec---CC-eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCe
Q 037288          384 QLYDQYFLASSM---DG-TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-----GEDCKLRIWSIRSGE  454 (513)
Q Consensus       384 ~~~~~~l~s~s~---dg-~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-----~~Dg~v~vwd~~~~~  454 (513)
                      +.+...|+-|-.   +. .-+||-++. .......+..|.....+-.=-|.|||..|.--     +.+..|.-+|+.+++
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            334445554432   22 136776652 22244444444433322224578999876542     235567778888886


Q ss_pred             EEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          455 LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       455 ~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      .......  .+...+--++++.+++..++|-
T Consensus       276 ~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~  304 (386)
T PF14583_consen  276 RRRLMEM--PWCSHFMSSPDGKLFVGDGGDA  304 (386)
T ss_dssp             EEEEEEE---SEEEEEE-TTSSEEEEEE---
T ss_pred             ceEEEeC--CceeeeEEcCCCCEEEecCCCC
Confidence            5433222  2455667778899999988863

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.65  E-value=4.5  Score=39.02  Aligned_cols=192  Identities=12%  Similarity=0.095  Sum_probs=95.3

Q ss_pred             EEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc-cc-c
Q 037288          261 TADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC-SS-R  335 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~-~  335 (513)
                      ..+++.|++++....   ...|.|.|+..++.+..+...+...-.-..+  .-+.+-|.||.+.-..+....... .. .
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeecc
Confidence            457788998877652   2348899999998877776555333222222  346777788888888876332211 00 0


Q ss_pred             ccc----------------------ccCcCeEEEeeCC--eEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEE
Q 037288          336 AGR----------------------RHRIPYSRLQRND--RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYF  390 (513)
Q Consensus       336 ~~~----------------------~h~~~v~~v~~~~--~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l  390 (513)
                      .+.                      ...+.|..++++.  --+...|.+......  ..-..++...-+ ++++.. +++
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~--~~~WrPGG~Q~~-A~~~~~~rly  253 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK--ADGWRPGGWQLI-AYHAASGRLY  253 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH--HTTEEE-SSS-E-EEETTTTEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc--ccCcCCcceeee-eeccccCeEE
Confidence            011                      1122333333333  111222543221100  001112222222 444333 333


Q ss_pred             EEEe-------cCCe--EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEe
Q 037288          391 LASS-------MDGT--VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSG-GEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       391 ~s~s-------~dg~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg-~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      +...       .|+.  |-++|+.  ..+.+..+.. ...+..  +.++.+.+ +|++. ..++.+.+||..+|+++.++
T Consensus       254 vLMh~g~~gsHKdpgteVWv~D~~--t~krv~Ri~l-~~~~~S--i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWVYDLK--THKRVARIPL-EHPIDS--IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEEEETT--TTEEEEEEEE-EEEESE--EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEecCCCCCCccCCceEEEEEECC--CCeEEEEEeC-CCccce--EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            3221       1222  5555664  4456666652 122334  77778765 55544 45899999999999999997


Q ss_pred             cCC
Q 037288          460 KFS  462 (513)
Q Consensus       460 ~~~  462 (513)
                      ..-
T Consensus       329 ~~l  331 (342)
T PF06433_consen  329 EQL  331 (342)
T ss_dssp             ---
T ss_pred             hcc
Confidence            653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.52  E-value=3.5  Score=37.21  Aligned_cols=104  Identities=12%  Similarity=0.188  Sum_probs=71.4

Q ss_pred             EEEcCCCCEE-EEEecCCeEEEEecCCCCcc-----ceEEecC-----CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          381 QSLQLYDQYF-LASSMDGTVKLYDHRLTTRG-----AVQSYEG-----HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       381 ~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~-----~~~~~~~-----h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      ..|+.+.+.| .+-+.+-.|.-||.......     .+..++.     |..+ -.  ++++.+|++.++.-..++|.-.|
T Consensus       163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P-DG--m~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP-DG--MTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCC-Cc--ceEccCCcEEEEEecCcEEEEEC
Confidence            3455555544 45566777877884321111     2222221     1111 12  45567888888888889999999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCC--CceEEeeCCCeee
Q 037288          450 IRSGELVFEDKFSNSVPSAVCWRTQ--RSMGPQIEGKIHE  487 (513)
Q Consensus       450 ~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~~t~~~~~~~  487 (513)
                      ..+|+.+.+++.....++++||.-.  ..+++|+..++..
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~d  279 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFDD  279 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhcccC
Confidence            9999999999888888999999866  7889999888773

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.44  E-value=2.8  Score=43.47  Aligned_cols=65  Identities=15%  Similarity=0.211  Sum_probs=44.0

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCC-------eE--EEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSD-------IL--AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~-------V~--~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ++.+++...++.+...|..+|+.++.+.....       +.  .+... ++..++.++.+|.|..+|.++++..-
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEee
Confidence            55555555677788899999998887763322       11  11111 22677888899999999999887653

The alignment model contains an 8-bladed beta-propeller.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.40  E-value=4  Score=43.10  Aligned_cols=184  Identities=14%  Similarity=0.123  Sum_probs=98.7

Q ss_pred             CCCEEEEEe-C------CeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCC------CeEEEEECCCCccc
Q 037288          267 NPSQAVIGT-N------LGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRN------GAIVTVDVRKRQRG  331 (513)
Q Consensus       267 ~g~~l~s~s-~------~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~  331 (513)
                      .+.+++.|+ .      +.+..+|..++.-.....  ....-.++++. ++.+.++||.|      .++..||.+..+..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            455556554 2      237788988875333322  33334455544 56889999998      47788999888765


Q ss_pred             cccccccccCcCeEEEeeCC-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-
Q 037288          332 CSSRAGRRHRIPYSRLQRND-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG-  397 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-  397 (513)
                      . +..+...+.......... .++.|+            ||....+.........  .........-+|...++|+.++ 
T Consensus       363 ~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  363 P-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             c-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCCC
Confidence            4 444544444444444443 444454            3333332221111111  1111122223688888888554 


Q ss_pred             -----eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCeEEEE
Q 037288          398 -----TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-----LRIWSIRSGELVFE  458 (513)
Q Consensus       398 -----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-----v~vwd~~~~~~~~~  458 (513)
                           ++..||........+..+..-.....   ++ .-++.+.+.||.|+.     |..||..+.+....
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g---~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG---VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccce---EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence                 46678876444333333332222111   11 135778888888873     77788887665444

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.40  E-value=4  Score=43.22  Aligned_cols=195  Identities=13%  Similarity=0.068  Sum_probs=95.9

Q ss_pred             CcEEEEEEcCCCCEEEEEe-------CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC-CeEEEEECC
Q 037288          257 CTVWTADFCTNPSQAVIGT-------NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN-GAIVTVDVR  326 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s-------~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d-g~i~iwd~~  326 (513)
                      ..+...+++|+|+.++...       +..  +.+++.. +........ ...+.-.|+|||..|++.... ..+++.+-.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            3577889999999887554       322  5555653 222222222 238888999998877666432 222222221


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ...... +..+.                       .+..   .. .....|..+ .+++||..++... ++.|.+--+..
T Consensus       428 ~~gql~-~~~vd-----------------------~ge~---~~-~~~g~Issl-~wSpDG~RiA~i~-~g~v~Va~Vvr  477 (591)
T PRK13616        428 ATGQLA-RTPVD-----------------------ASAV---AS-RVPGPISEL-QLSRDGVRAAMII-GGKVYLAVVEQ  477 (591)
T ss_pred             CCceEE-EEecc-----------------------Cchh---hh-ccCCCcCeE-EECCCCCEEEEEE-CCEEEEEEEEe
Confidence            110000 00000                       0000   00 112234443 6788999887765 56776632211


Q ss_pred             CCccc--e---EEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecC--CCCCeEEEEEcCCCce
Q 037288          407 TTRGA--V---QSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELVFEDKF--SNSVPSAVCWRTQRSM  477 (513)
Q Consensus       407 ~~~~~--~---~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~--~~~~v~~v~~~p~~~~  477 (513)
                      ...+.  +   ..+. +-...+  ..+.|..++.++ .+..++...+|.+.- |.....+..  ...++.+|+=++. .+
T Consensus       478 ~~~G~~~l~~~~~l~~~l~~~~--~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~i  553 (591)
T PRK13616        478 TEDGQYALTNPREVGPGLGDTA--VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TV  553 (591)
T ss_pred             CCCCceeecccEEeecccCCcc--ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eE
Confidence            12222  1   1121 122222  337898888854 555555555554432 222222222  2456778887774 56


Q ss_pred             EEeeCCCeee
Q 037288          478 GPQIEGKIHE  487 (513)
Q Consensus       478 ~~t~~~~~~~  487 (513)
                      +++..+...+
T Consensus       554 yv~~~~g~~~  563 (591)
T PRK13616        554 YVTDARAVLQ  563 (591)
T ss_pred             EEEcCCceEE
Confidence            6666666554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.17  E-value=0.58  Score=46.91  Aligned_cols=94  Identities=11%  Similarity=0.067  Sum_probs=60.3

Q ss_pred             EEEecCCeEEEEecCCCCccceEEecCCC--CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeE
Q 037288          391 LASSMDGTVKLYDHRLTTRGAVQSYEGHV--NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPS  467 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~~~~~~~~~~~~h~--~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~  467 (513)
                      +.|-.|..|.-||.|......+..-++|.  .....-+++-..+ .+|++||.+|.|++||- .+....+ +.+-+.+|.
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIK  475 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCcee
Confidence            44667889999999853332333333332  1111112333334 48999999999999996 5554444 667788999


Q ss_pred             EEEEcCCC-ceEEeeCCCee
Q 037288          468 AVCWRTQR-SMGPQIEGKIH  486 (513)
Q Consensus       468 ~v~~~p~~-~~~~t~~~~~~  486 (513)
                      .|..+.++ .+++|+..-+-
T Consensus       476 hVdvtadGKwil~Tc~tyLl  495 (644)
T KOG2395|consen  476 HVDVTADGKWILATCKTYLL  495 (644)
T ss_pred             eEEeeccCcEEEEecccEEE
Confidence            99999885 56666665443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.06  E-value=0.19  Score=33.02  Aligned_cols=34  Identities=9%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          420 NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      ..|..  ++|+|...+||.|..||.|.++.+ +++.+
T Consensus        12 ~~v~~--~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   12 SRVSC--MSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CcEEE--EEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            34554  899999999999999999999998 66543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.01  E-value=1.4  Score=44.03  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=38.6

Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cC------CCCCeEEEEEc
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED--KF------SNSVPSAVCWR  472 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~--~~------~~~~v~~v~~~  472 (513)
                      +..-++...++|+.  ++.| |=.+++.|.++|.+.|.|++....++.-  ..      ....++++.|.
T Consensus        78 P~~l~~~~~g~vta--l~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   78 PLTLLDAKQGPVTA--LKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             EEEEE---S-SEEE--EEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred             chhheeccCCcEeE--EecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence            44455666788877  5554 5569999999999999999999988873  22      23457777776

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.89  E-value=2.3  Score=44.97  Aligned_cols=186  Identities=12%  Similarity=0.014  Sum_probs=94.8

Q ss_pred             EEEEcCCCCEEEEEeCC-------eEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCCC-----eEEEEECC
Q 037288          261 TADFCTNPSQAVIGTNL-------GAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRNG-----AIVTVDVR  326 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~-------~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~dg-----~i~iwd~~  326 (513)
                      +++.. ++.+.++|+.+       .+-.||..+++=...-.-...  -.+++ .-+|.+.++||.||     +|-.||..
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCC
Confidence            34443 44555666433       266778877762211111111  11222 12688999999985     47789988


Q ss_pred             CCccccccccccccCcCeEEEeeCC-eEEEeEeecccC-------------cccceeEeecCCCceEEEEEcCCCCEEEE
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQWFELKA-------------NIWPSHTTFMPSSISCLQSLQLYDQYFLA  392 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~w~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  392 (513)
                      +.+... +..+.........+.+.. .++.|+|+....             ................+..  -++..++.
T Consensus       405 ~~~W~~-va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvv  481 (571)
T KOG4441|consen  405 TNKWTP-VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVV  481 (571)
T ss_pred             CCcccc-cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEE
Confidence            887654 333333333444444444 444555444332             2111111111111122222  26788888


Q ss_pred             EecCCe-----EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeE
Q 037288          393 SSMDGT-----VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC-----KLRIWSIRSGEL  455 (513)
Q Consensus       393 ~s~dg~-----i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-----~v~vwd~~~~~~  455 (513)
                      |+.|+.     |..||....+...+..+......+.+  ..  -++...+.|+.||     +|..||..+.+-
T Consensus       482 GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~--~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  482 GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV--VV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             CCccCCCccceEEEEcCCCCceeEcccCccccccccE--EE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence            887763     77788874333344334333333222  11  2467778888886     466777666553

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.88  E-value=7.1  Score=40.52  Aligned_cols=31  Identities=16%  Similarity=0.377  Sum_probs=27.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecCC
Q 037288          432 SERFVMSGGEDCKLRIWSIRSGELVFEDKFS  462 (513)
Q Consensus       432 ~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~  462 (513)
                      .+..|+.++.||.|+.+|..+|+.+-+.+..
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~  435 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRTP  435 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence            4678999999999999999999999887653

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=93.56  E-value=7.1  Score=41.25  Aligned_cols=197  Identities=8%  Similarity=-0.018  Sum_probs=89.4

Q ss_pred             eEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC------CeEEEEECCCCccccccccccccCcCeEEEee
Q 037288          278 GAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN------GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR  349 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  349 (513)
                      .+..||..+++-...-.-..+  -.+++. -++.+++.||.+      ..+..||+++..... +..+.........+..
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE
Confidence            356788877653222111111  122222 367788888754      357889988775433 3333333333333333


Q ss_pred             CC-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-------------------
Q 037288          350 ND-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG-------------------  397 (513)
Q Consensus       350 ~~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-------------------  397 (513)
                      .. .++.|+            |+...........+..+..-.+.+.  -++...+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            33 333333            2322222111111111111112222  2677788887653                   


Q ss_pred             ----eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC------cEEEEeCCC-Ce--EEEEecCCCC
Q 037288          398 ----TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC------KLRIWSIRS-GE--LVFEDKFSNS  464 (513)
Q Consensus       398 ----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg------~v~vwd~~~-~~--~~~~~~~~~~  464 (513)
                          .+..||........+..+....... .  ++ .-+|++.+.||.++      .+..||..+ .+  .+..+.....
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~--~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRP-G--VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccC-c--EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence                4677887633333333332111111 1  11 23467777777642      467899886 44  3333433322


Q ss_pred             CeEEEEEcCCCceEEeeCCC
Q 037288          465 VPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       465 ~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ....++.  ++.+++.++.+
T Consensus       505 ~~~~~~~--~~~iyv~Gg~~  522 (557)
T PHA02713        505 ALHTILH--DNTIMMLHCYE  522 (557)
T ss_pred             cceeEEE--CCEEEEEeeec
Confidence            2333333  44555555533

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.44  E-value=1.9  Score=43.27  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=87.4

Q ss_pred             CCCEEEEEe--CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-------EEEEEeCCCeEEEEECCCCccccccccc
Q 037288          267 NPSQAVIGT--NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-------VVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       267 ~g~~l~s~s--~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      +..+|..-+  .+.+.-.|++.|+.+.....+..| -++|.|+..       .-++|-.+..|.-.|.|......   ..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi---~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI---KV  553 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce---ee
Confidence            444555333  234777799999988888877777 778888531       23456567777777877554211   11


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                      ......++.-.                            ..|.  ......++|+|+..|.|++||--  ....-..+.+
T Consensus       554 ~esKdY~tKn~----------------------------Fss~--~tTesGyIa~as~kGDirLyDRi--g~rAKtalP~  601 (776)
T COG5167         554 VESKDYKTKNK----------------------------FSSG--MTTESGYIAAASRKGDIRLYDRI--GKRAKTALPG  601 (776)
T ss_pred             eeehhcccccc----------------------------cccc--ccccCceEEEecCCCceeeehhh--cchhhhcCcc
Confidence            11111111111                            1111  12345689999999999999952  1112233455


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      ....+..  +.++.+|++|++.|. ..+.+-|+.
T Consensus       602 lG~aIk~--idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         602 LGDAIKH--IDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccceee--eEeecCCcEEEEeec-ceEEEEecc
Confidence            5566656  677889999988875 467777764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.41  E-value=0.24  Score=44.22  Aligned_cols=86  Identities=13%  Similarity=0.137  Sum_probs=54.0

Q ss_pred             CCCEEEEEecCCeEEEEecCCCCccc-eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC-
Q 037288          386 YDQYFLASSMDGTVKLYDHRLTTRGA-VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN-  463 (513)
Q Consensus       386 ~~~~l~s~s~dg~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~-  463 (513)
                      -+.-+++|+.+|.|.+|...  ..+. .-.+..-.+.+.+ .+..-.++.+..++++||.|+.|++.-.+.+.....|. 
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n--~~g~~~d~~~s~~e~i~~-~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWN--LEGAHSDRVCSGEESIDL-GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             cCceEEeecccceEEEecCC--ccchHHHhhhccccccee-ccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence            35668899999999999875  2221 1111111222211 12223355688999999999999999998888777766 


Q ss_pred             CCeEEEEEcCC
Q 037288          464 SVPSAVCWRTQ  474 (513)
Q Consensus       464 ~~v~~v~~~p~  474 (513)
                      .++........
T Consensus       146 ~~~e~~ivv~s  156 (238)
T KOG2444|consen  146 ESGEELIVVGS  156 (238)
T ss_pred             CCcceeEEecC
Confidence            44444444433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.91  E-value=0.24  Score=52.57  Aligned_cols=187  Identities=13%  Similarity=0.123  Sum_probs=110.0

Q ss_pred             eccccCcEEEEEEcC-CCCEEEEEeCCeEEEEECC--CCcEE-----EEee-eCCC---eEEEEEecCCcEEEEEeCCCe
Q 037288          252 VASFKCTVWTADFCT-NPSQAVIGTNLGAAMVDME--TGMAS-----WVCR-SKSD---ILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~-~g~~l~s~s~~~i~vwd~~--~~~~~-----~~~~-~~~~---V~~l~~~~~~~~l~sg~~dg~  319 (513)
                      +++..+.|-.+.|-. +-..+. ---+.+.|||+.  .|+..     .... -..+   |..+.|.++..++..+..+++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            667778888888843 111221 001236678764  34321     1111 1223   444444456678888888999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      |++........    .-+.+|...+..++|-                       ...+.-+..++|||..|+.++.||.+
T Consensus       207 i~lL~~~ra~~----~l~rsHs~~~~d~a~~-----------------------~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  207 IRLLNINRALR----SLFRSHSQRVTDMAFF-----------------------AEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             eeEeeechHHH----HHHHhcCCCcccHHHH-----------------------hhchhhheeeCCCCcEEEEeecCCcc
Confidence            99887765432    2455688888776651                       22333345689999999999999999


Q ss_pred             EEEecCCCC---ccceEEecCCCC-ceeEEEEEEcCC-------CC--EEEEEe-CCCcEEEEeCCCCeEEEEecCCCCC
Q 037288          400 KLYDHRLTT---RGAVQSYEGHVN-SHTRIQLGVDQS-------ER--FVMSGG-EDCKLRIWSIRSGELVFEDKFSNSV  465 (513)
Q Consensus       400 ~lwd~~~~~---~~~~~~~~~h~~-~v~~~~~~~s~~-------g~--~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~  465 (513)
                      +.|-+....   ..++...+.|.. +-.|  +.++.+       +.  +++++. .+..+++|.....+++.  ...-..
T Consensus       260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC--~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll--~~~~d~  335 (1283)
T KOG1916|consen  260 GFYQIYITGKIVHRCLHEWKPHDKHPRVC--WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL--DKLIDG  335 (1283)
T ss_pred             ceeeeeeeccccHhhhhccCCCCCCCcee--eeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh--hhcccc
Confidence            999764211   126777777773 3222  223332       22  344444 35679999998888772  222333


Q ss_pred             eEEEE
Q 037288          466 PSAVC  470 (513)
Q Consensus       466 v~~v~  470 (513)
                      |..|.
T Consensus       336 v~iV~  340 (1283)
T KOG1916|consen  336 VQIVG  340 (1283)
T ss_pred             eEeec
Confidence            55555

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.89  E-value=11  Score=37.62  Aligned_cols=71  Identities=11%  Similarity=-0.056  Sum_probs=38.1

Q ss_pred             EEEcCCCCEEEEE-eC------CeEEEEECCCCcEEEEeeeC--CC--eEEEEEecCCcEEEEEeC--------------
Q 037288          262 ADFCTNPSQAVIG-TN------LGAAMVDMETGMASWVCRSK--SD--ILAQQVIHSGNVVLCGFR--------------  316 (513)
Q Consensus       262 ~~~s~~g~~l~s~-s~------~~i~vwd~~~~~~~~~~~~~--~~--V~~l~~~~~~~~l~sg~~--------------  316 (513)
                      +..-|+|+.++++ ++      +++.+.|-++..........  ..  -..+-|.|..+++++...              
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence            4444789887765 21      34888998887766555422  12  466777888888888743              


Q ss_pred             ------CCeEEEEECCCCcccc
Q 037288          317 ------NGAIVTVDVRKRQRGC  332 (513)
Q Consensus       317 ------dg~i~iwd~~~~~~~~  332 (513)
                            -.++.+||+.+.+...
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~~Q  236 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKLLQ  236 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEEEE
T ss_pred             hhcccccCeEEEEECCCCcEee
Confidence                  2789999998887644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.86  E-value=11  Score=37.33  Aligned_cols=226  Identities=12%  Similarity=0.087  Sum_probs=106.2

Q ss_pred             cCCCCCccccCcceeeec----ccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCccccc
Q 037288          170 SKAPEHIWRLNKASILMP----SSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIR  245 (513)
Q Consensus       170 ~~~~~~~w~p~~~~~~~~----s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  245 (513)
                      .....+.|+|++..+.+.    +.|..+.+........ ..|.....-....|.....-.+.++++.+.....    +..
T Consensus       101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~----~~~  175 (353)
T PF00930_consen  101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-QYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE----LDP  175 (353)
T ss_dssp             SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-SS-EEEEEE--BTTS---EEEEEEEESSSTCCCE----E--
T ss_pred             ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-cCCcccccccCCCCCcCCceEEEEEECCCCcEEE----eee
Confidence            335678899997665552    3344444431111000 1111122222333344444455567776544320    000


Q ss_pred             CceeEEeccccCcEEEEEEcCCCC-EEEEEeC-C--e--EEEEECCCCcEEEEee--eCCCe---EEEEEe-cCC-cEEE
Q 037288          246 RSTMHLVASFKCTVWTADFCTNPS-QAVIGTN-L--G--AAMVDMETGMASWVCR--SKSDI---LAQQVI-HSG-NVVL  312 (513)
Q Consensus       246 ~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s~-~--~--i~vwd~~~~~~~~~~~--~~~~V---~~l~~~-~~~-~~l~  312 (513)
                      .   ..+..-..-+..+.|.+++. +++.-.+ .  .  +.+.|..++.......  ....|   ....|. +++ .+|.
T Consensus       176 ~---~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~  252 (353)
T PF00930_consen  176 P---NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW  252 (353)
T ss_dssp             ----HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred             c---cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE
Confidence            0   00122345788999999998 4443332 2  2  6677888876544443  22223   355554 555 5666


Q ss_pred             EEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE-
Q 037288          313 CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL-  391 (513)
Q Consensus       313 sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-  391 (513)
                      ....||.-+++-+......  .+.+....-                                 .|..+..++++++.+. 
T Consensus       253 ~s~~~G~~hly~~~~~~~~--~~~lT~G~~---------------------------------~V~~i~~~d~~~~~iyf  297 (353)
T PF00930_consen  253 ISERDGYRHLYLYDLDGGK--PRQLTSGDW---------------------------------EVTSILGWDEDNNRIYF  297 (353)
T ss_dssp             EEETTSSEEEEEEETTSSE--EEESS-SSS----------------------------------EEEEEEEECTSSEEEE
T ss_pred             EEEcCCCcEEEEEcccccc--eeccccCce---------------------------------eecccceEcCCCCEEEE
Confidence            6667876666644333221  112222222                                 2334456666666544 


Q ss_pred             EEecC--CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe
Q 037288          392 ASSMD--GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG  440 (513)
Q Consensus       392 s~s~d--g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~  440 (513)
                      +|..+  +.-+||-+.....+.+..+.......  ..+.|||+|++++-.+
T Consensus       298 ~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  298 TANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSSEEEEEE
T ss_pred             EecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCCEEEEEE
Confidence            44442  34455544321144566666444443  3489999999887544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA03098 kelch-like protein; Provisional

Probab=92.17  E-value=8  Score=40.66  Aligned_cols=181  Identities=8%  Similarity=-0.010  Sum_probs=82.1

Q ss_pred             CCCEEEEEeC-------CeEEEEECCCCcEEEEeeeC--CCeEEEEEecCCcEEEEEeCC-----CeEEEEECCCCcccc
Q 037288          267 NPSQAVIGTN-------LGAAMVDMETGMASWVCRSK--SDILAQQVIHSGNVVLCGFRN-----GAIVTVDVRKRQRGC  332 (513)
Q Consensus       267 ~g~~l~s~s~-------~~i~vwd~~~~~~~~~~~~~--~~V~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~  332 (513)
                      ++.+++.|+.       ..+..||..+++-...-...  ..-.++. .-++.+++.||.+     ..+..||..+.+...
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            4555555542       13667888776543221111  1111222 2367888888875     457788988776543


Q ss_pred             ccccccccCcCeEEEeeCC-eEEEeE-------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-
Q 037288          333 SSRAGRRHRIPYSRLQRND-RVTNEQ-------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG-  397 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~-~~~s~~-------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-  397 (513)
                       ...+.........+.... .++.|+             |+..+...........+....+.  ...++..++.|+.++ 
T Consensus       373 -~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        373 -EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA--IYHDGKIYVIGGISYI  449 (534)
T ss_pred             -CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE--EEECCEEEEECCccCC
Confidence             223322222222222333 333333             22222211111111111111122  223566777776432 


Q ss_pred             -------eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeE
Q 037288          398 -------TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGEL  455 (513)
Q Consensus       398 -------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~  455 (513)
                             .+.+||....+...+..+.........  +.  .++++++.||.+     ..|.+||..+.+-
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~--~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASL--CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceE--EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence                   378888863332222222111111111  22  257777777765     4678888777654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.70  E-value=0.98  Score=44.46  Aligned_cols=169  Identities=11%  Similarity=0.115  Sum_probs=94.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEE--EEee-eCCC----eE-EEEEecCCcEEEEEeCCCeEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMAS--WVCR-SKSD----IL-AQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~--~~~~-~~~~----V~-~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      +..-...|..+-..|||+.+..-+...+.++++.+....  .+.. ..++    |+ ++..-..|.-+.+++.||-|.-|
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW  295 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW  295 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence            444456788889999999888766677888888765421  1111 1221    22 22222345668888999999887


Q ss_pred             -ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC-CCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288          324 -DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP-SSISCLQSLQLYDQYFLASSMDGTVKL  401 (513)
Q Consensus       324 -d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~dg~i~l  401 (513)
                       |.+.... +       |-.-++                        .++.. ..+.- ..-..+.+-|++-+..|++.+
T Consensus       296 Fdvr~~~~-p-------~l~h~R------------------------~f~l~pa~~~~-l~pe~~rkgF~~l~~~G~L~~  342 (733)
T COG4590         296 FDVRRDGQ-P-------HLNHIR------------------------NFKLAPAEVQF-LLPETNRKGFYSLYRNGTLQS  342 (733)
T ss_pred             eeeecCCC-C-------cceeee------------------------ccccCccccee-eccccccceEEEEcCCCceee
Confidence             5554432 1       111111                        11111 11111 111223456777778888887


Q ss_pred             EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      +..-  ....+ -++.-......  +++||.+.+|++-. .|.++++.+++..+--++
T Consensus       343 f~st--~~~~l-L~~~~~~~~~~--~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         343 FYST--SEKLL-LFERAYQAPQL--VAMSPNQAYLLSED-QGKIRLAQLENRNPEISW  394 (733)
T ss_pred             eecc--cCcce-ehhhhhcCcce--eeeCcccchheeec-CCceEEEEecCCCCCccH
Confidence            7653  22221 11111112223  78899999888643 578999998877655443

>PHA02790 Kelch-like protein; Provisional

Probab=91.69  E-value=8.5  Score=39.84  Aligned_cols=177  Identities=11%  Similarity=-0.005  Sum_probs=81.1

Q ss_pred             CCCEEEEEeC------CeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCC--CeEEEEECCCCcccccccc
Q 037288          267 NPSQAVIGTN------LGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRN--GAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       267 ~g~~l~s~s~------~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~  336 (513)
                      ++.++++|+.      ..+..||..++.-...-.  ....-.++. .-++.+.+.||.+  ..+..||....+... +..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence            4555566652      236678887765322221  111112222 2467888888864  357889987665433 334


Q ss_pred             ccccCcCeEEEeeCC-eEEEeEe----------ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          337 GRRHRIPYSRLQRND-RVTNEQW----------FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~-~~~s~~w----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      +.........+.... .++.|+.          +..............+..-.+.+.  -++...+.|+   .+.+||..
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCC
Confidence            433333333333444 3334432          222221111111111111112222  2566666663   56788886


Q ss_pred             CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGE  454 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~  454 (513)
                      ......+..+....... .  ++ --+|++.+.||.+     ..|..||..+++
T Consensus       424 ~~~W~~~~~m~~~r~~~-~--~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        424 SNTWTLIDDPIYPRDNP-E--LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCcEeEcCCCCCCcccc-E--EE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            33333333332111111 1  22 1357777888765     346666666554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.63  E-value=9.7  Score=34.13  Aligned_cols=122  Identities=11%  Similarity=0.097  Sum_probs=69.6

Q ss_pred             CEEEEEeCCeEEEEECCCC--cEEEEeeeCCCeEEEEEecCCcEEEEEeCC---C---eEEEE-ECCCC--ccccccc-c
Q 037288          269 SQAVIGTNLGAAMVDMETG--MASWVCRSKSDILAQQVIHSGNVVLCGFRN---G---AIVTV-DVRKR--QRGCSSR-A  336 (513)
Q Consensus       269 ~~l~s~s~~~i~vwd~~~~--~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d---g---~i~iw-d~~~~--~~~~~~~-~  336 (513)
                      .++++.+...|.+|++.+.  +....+..-+.|..+.++..|++|++--.+   .   .+++| +.+..  ...+ +. .
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~-v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP-VRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc-EEEE
Confidence            3444456667999999843  356666777889999999999999987443   2   55665 22222  1111 11 2


Q ss_pred             ccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          337 GRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      +.||...-..            ....+.......+....++.++.+.+-.|++++ |+ ++.+.+|.+.
T Consensus       109 iaG~~v~~~~------------~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~  163 (215)
T PF14761_consen  109 IAGHRVTPSF------------NESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLK  163 (215)
T ss_pred             EcccccccCC------------CCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEE
Confidence            3333110000            000000112233445667888877777787655 44 4689999874

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.37  E-value=8.7  Score=40.60  Aligned_cols=65  Identities=11%  Similarity=0.039  Sum_probs=45.1

Q ss_pred             EEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee--eCCCeEEEEEe--cCCcEEEEEeCCCeEEEEEC
Q 037288          261 TADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR--SKSDILAQQVI--HSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~--~~~~V~~l~~~--~~~~~l~sg~~dg~i~iwd~  325 (513)
                      -+.-+.-++..++.+++ .+.|||...+.......  ..+.|.+++|.  |+|+.+++-|....|.++--
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            33334444444444444 49999999887444333  47789999997  58888888889999999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.33  E-value=4.9  Score=42.43  Aligned_cols=100  Identities=7%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCeEE
Q 037288          386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR---------SGELV  456 (513)
Q Consensus       386 ~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~---------~~~~~  456 (513)
                      -++.-++-+....+.|||.+......-..| ...+.|..++....|+|+.+++.|....|.++.-.         +..++
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            444445555566799999862111122333 24566777777778999999999999999999542         22344


Q ss_pred             EEe--cCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288          457 FED--KFS-NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       457 ~~~--~~~-~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..+  ..+ ..+|.+.+|.+++.++++++..+.
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlf  151 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLF  151 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEeCCEEE
Confidence            443  223 367999999999999999988877

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.32  E-value=0.75  Score=29.38  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=26.3

Q ss_pred             CCeEEEEEecCC---cEEEEEeCCCeEEEEECCC
Q 037288          297 SDILAQQVIHSG---NVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       297 ~~V~~l~~~~~~---~~l~sg~~dg~i~iwd~~~  327 (513)
                      +.|.+++|+|+.   .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   5888888889999999995

It contains a characteristic DLL sequence motif.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.96  E-value=17  Score=35.80  Aligned_cols=166  Identities=8%  Similarity=0.023  Sum_probs=75.8

Q ss_pred             eEEEEECCCCcEEEEeeeCCCeEEEEEecCC-cEEEEEeC---CC-eEEEEECCCCccccccccccccCcCeEEEeeCCe
Q 037288          278 GAAMVDMETGMASWVCRSKSDILAQQVIHSG-NVVLCGFR---NG-AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDR  352 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~-~~l~sg~~---dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~  352 (513)
                      .|.-.|+.+|+...++.....+.-+.|+|.. .+|+-|-+   +. .-+||-+++....  .+.+..|.           
T Consensus       169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~-----------  235 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRM-----------  235 (386)
T ss_dssp             EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS--------------
T ss_pred             eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc--ceeeecCC-----------
Confidence            4666799999988888888889999999955 55555432   32 2356655543321  11222221           


Q ss_pred             EEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-----CCeEEEEecCCCCccceEEecCCCCceeEEEE
Q 037288          353 VTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-----DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL  427 (513)
Q Consensus       353 ~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~  427 (513)
                                           ...+..--+|.++|..+..-+.     +..|.-+|+.......+....    .  +..+
T Consensus       236 ---------------------~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~--~~H~  288 (386)
T PF14583_consen  236 ---------------------EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----W--CSHF  288 (386)
T ss_dssp             ---------------------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----S--EEEE
T ss_pred             ---------------------CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----c--eeee
Confidence                                 1111222467777776654322     334556666521111222221    1  3336


Q ss_pred             EEcCCCCEEEEEeCCC----------------cEEEEeCCCCeEEEEecC---------CCC-CeEEEEEcCCC-ceEEe
Q 037288          428 GVDQSERFVMSGGEDC----------------KLRIWSIRSGELVFEDKF---------SNS-VPSAVCWRTQR-SMGPQ  480 (513)
Q Consensus       428 ~~s~~g~~l~sg~~Dg----------------~v~vwd~~~~~~~~~~~~---------~~~-~v~~v~~~p~~-~~~~t  480 (513)
                      ..++||++++-=|.|.                -|+++++..+.......+         +.. .=-...|+|++ .++-+
T Consensus       289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~  368 (386)
T PF14583_consen  289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR  368 (386)
T ss_dssp             EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEE
T ss_pred             EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE
Confidence            6688998776544432                466788887765432211         111 11357899994 44544


Q ss_pred             eCC
Q 037288          481 IEG  483 (513)
Q Consensus       481 ~~~  483 (513)
                      ++.
T Consensus       369 Sd~  371 (386)
T PF14583_consen  369 SDM  371 (386)
T ss_dssp             E-T
T ss_pred             CCC
Confidence            444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.81  E-value=14  Score=34.65  Aligned_cols=206  Identities=11%  Similarity=0.064  Sum_probs=117.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +.+-...|.++.|+|+.+.|.+..+.. ..|+=..+|+.+..+.  .-.+--+|.+..+++++++--+++.+.++-+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            445556699999999999887776654 5566556688777765  3344567778888888888888999999887765


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .........        .+.                   ...... ..+... .++++..+.|..+=.-.-+.||.....
T Consensus       161 t~~~~~~~~--------~i~-------------------L~~~~k~N~GfEG-lA~d~~~~~l~~aKEr~P~~I~~~~~~  212 (316)
T COG3204         161 TTVISAKVQ--------KIP-------------------LGTTNKKNKGFEG-LAWDPVDHRLFVAKERNPIGIFEVTQS  212 (316)
T ss_pred             ccEEeccce--------EEe-------------------ccccCCCCcCcee-eecCCCCceEEEEEccCCcEEEEEecC
Confidence            432100000        000                   000000 112222 366777777777777667777765311


Q ss_pred             Ccc-ceEEecCCCCc--eeE---EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec---------CCCCCeEEEEE
Q 037288          408 TRG-AVQSYEGHVNS--HTR---IQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFEDK---------FSNSVPSAVCW  471 (513)
Q Consensus       408 ~~~-~~~~~~~h~~~--v~~---~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~---------~~~~~v~~v~~  471 (513)
                      ... .+.....+...  +..   -.+.|++ .+.+|+-+.+++.+.-.|.. |..+..+.         ..-....+++.
T Consensus       213 ~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiam  291 (316)
T COG3204         213 PSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAM  291 (316)
T ss_pred             CcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEE
Confidence            111 11111222211  111   1155665 35566666777777777754 44333321         11123567888


Q ss_pred             cCCCceEEeeCCCee
Q 037288          472 RTQRSMGPQIEGKIH  486 (513)
Q Consensus       472 ~p~~~~~~t~~~~~~  486 (513)
                      .+++.+++.++-+..
T Consensus       292 Dd~g~lYIvSEPnlf  306 (316)
T COG3204         292 DDDGNLYIVSEPNLF  306 (316)
T ss_pred             CCCCCEEEEecCCcc
Confidence            888877777776644

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=90.75  E-value=14  Score=34.34  Aligned_cols=150  Identities=11%  Similarity=0.057  Sum_probs=79.5

Q ss_pred             CCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          296 KSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       296 ~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                      ...+..++|+|+. .++++....+.|..++.. ++... -..+.+                                  .
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr-~i~l~g----------------------------------~   64 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR-RIPLDG----------------------------------F   64 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE-EEE-SS-----------------------------------
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE-EEeCCC----------------------------------C
Confidence            3459999999975 577788888999888874 43322 011111                                  1


Q ss_pred             CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc----ceEEec-----CCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288          375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG----AVQSYE-----GHVNSHTRIQLGVDQSERFVMSGGEDCKL  445 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~----~~~~~~-----~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v  445 (513)
                      +....+ .+-.++.++++.-.++.+.++++......    .+..+.     .+......  ++|++.++.|+.+-+..-.
T Consensus        65 ~D~EgI-~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EG--la~D~~~~~L~v~kE~~P~  141 (248)
T PF06977_consen   65 GDYEGI-TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEG--LAYDPKTNRLFVAKERKPK  141 (248)
T ss_dssp             SSEEEE-EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EE--EEEETTTTEEEEEEESSSE
T ss_pred             CCceeE-EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEE--EEEcCCCCEEEEEeCCCCh
Confidence            122222 33345655555555899999988421111    122222     23334566  8999998888888888777


Q ss_pred             EEEeCCC---CeEEEEe--------cCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          446 RIWSIRS---GELVFED--------KFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       446 ~vwd~~~---~~~~~~~--------~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      .||.+..   ...+...        ......+.+++++|. +.+++-++..
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es  192 (248)
T PF06977_consen  142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES  192 (248)
T ss_dssp             EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT
T ss_pred             hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC
Confidence            7777754   2222221        112345889999998 4544444433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=90.50  E-value=16  Score=34.48  Aligned_cols=142  Identities=11%  Similarity=0.053  Sum_probs=81.9

Q ss_pred             CCCEEEEEeCCeEEEEECCCC-----cEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccc--
Q 037288          267 NPSQAVIGTNLGAAMVDMETG-----MASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRR--  339 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~-----~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--  339 (513)
                      ....|+++....|.+|.....     +....+.-...+.+++|.  ++.|+.|..++ ..+.|+.++.... +.....  
T Consensus       104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~-l~~~~~~~  179 (275)
T PF00780_consen  104 GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE-LLDPSDSS  179 (275)
T ss_pred             cceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE-EeCccCCc
Confidence            455777777888887765542     345556677889999998  66777776554 7788998665433 211111  


Q ss_pred             --------cCcCeEEEeeCC-eEEEeE-----eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          340 --------HRIPYSRLQRND-RVTNEQ-----WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       340 --------h~~~v~~v~~~~-~~~s~~-----w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                              ...++..+.... .++-+.     +-...|.......+.-......+...   ..||++.+. +.|.||++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~---~pyli~~~~-~~iEV~~~~  255 (275)
T PF00780_consen  180 SSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS---SPYLIAFSS-NSIEVRSLE  255 (275)
T ss_pred             chhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEE---CCEEEEECC-CEEEEEECc
Confidence                    123444444443 222221     33334443333344445555555443   346665554 569999997


Q ss_pred             CCCccceEEecCC
Q 037288          406 LTTRGAVQSYEGH  418 (513)
Q Consensus       406 ~~~~~~~~~~~~h  418 (513)
                        +...++++...
T Consensus       256 --~~~lvQ~i~~~  266 (275)
T PF00780_consen  256 --TGELVQTIPLP  266 (275)
T ss_pred             --CCcEEEEEECC
Confidence              55577777643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.05  E-value=16  Score=34.05  Aligned_cols=189  Identities=10%  Similarity=-0.049  Sum_probs=100.7

Q ss_pred             cEEEEEEcCCCCEEEEEe--CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEE-CCCCcccc
Q 037288          258 TVWTADFCTNPSQAVIGT--NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVD-VRKRQRGC  332 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s--~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd-~~~~~~~~  332 (513)
                      .+...++++++..+|...  ++.  +.++.....  .........+..-.|++++.+.+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688999999999887655  444  555544332  22222334688889999988777776666666663 23332211


Q ss_pred             ccc-cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe---cCCeEEEEecCCCC
Q 037288          333 SSR-AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS---MDGTVKLYDHRLTT  408 (513)
Q Consensus       333 ~~~-~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~lwd~~~~~  408 (513)
                       +. ....-...|.+                                  ..++|||..++.-.   .++.|.+--+....
T Consensus       103 -~~v~~~~~~~~I~~----------------------------------l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen  103 -VEVDWPGLRGRITA----------------------------------LRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             -EEecccccCCceEE----------------------------------EEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence             00 00000003333                                  36778998887655   34666666442111


Q ss_pred             cc-------ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-EEE-EeCCCCeEEEEecC--CCCCeEEEEEcCCCce
Q 037288          409 RG-------AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-LRI-WSIRSGELVFEDKF--SNSVPSAVCWRTQRSM  477 (513)
Q Consensus       409 ~~-------~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-v~v-wd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~  477 (513)
                      .+       ++.........+  ..++|.+++.+++.+...+. +.. ..+..+. ...+..  ...++.++.=++ ..+
T Consensus       148 ~g~~~~l~~~~~~~~~~~~~v--~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~-~~~l~~~~~~~~v~a~~~~~-~~~  223 (253)
T PF10647_consen  148 DGVPRRLTGPRRVAPPLLSDV--TDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP-STPLPSVNLGVPVVAVAASP-STV  223 (253)
T ss_pred             CCCcceeccceEecccccCcc--eeeeecCCCEEEEEeCCCCCceeEEEEccCCc-ccccCCCCCCcceEEeeCCC-cEE
Confidence            22       112222222333  34899999987776655433 444 3433322 222211  123344444333 347


Q ss_pred             EEeeCCCeee
Q 037288          478 GPQIEGKIHE  487 (513)
Q Consensus       478 ~~t~~~~~~~  487 (513)
                      +++.++.+.+
T Consensus       224 ~~t~~~~~~~  233 (253)
T PF10647_consen  224 YVTDDGGVLQ  233 (253)
T ss_pred             EEECCCcEEE
Confidence            8888777764

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.29  E-value=17  Score=36.63  Aligned_cols=145  Identities=10%  Similarity=0.057  Sum_probs=74.2

Q ss_pred             cEEEEEeCCCeEEEEECCCCccccccccc--cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-
Q 037288          309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAG--RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-  385 (513)
Q Consensus       309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-  385 (513)
                      ..|++|+.+|.++||+........ ...+  ..-..||..+...+                              +.+. 
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~-~~lllE~~l~~PILqv~~G~------------------------------F~s~~   86 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQP-EDLLLETQLKDPILQVECGK------------------------------FVSGS   86 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCC-ccEEEEEecCCcEEEEEecc------------------------------ccCCC
Confidence            689999999999999996544222 0011  11134555544311                              1111 


Q ss_pred             CCCEEEEEecCCeEEEEecCCCCcc-------ceEEecCCCCceeEEEEEEcC----C-CCEEEEEeCCCcEEEEeCCCC
Q 037288          386 YDQYFLASSMDGTVKLYDHRLTTRG-------AVQSYEGHVNSHTRIQLGVDQ----S-ERFVMSGGEDCKLRIWSIRSG  453 (513)
Q Consensus       386 ~~~~l~s~s~dg~i~lwd~~~~~~~-------~~~~~~~h~~~v~~~~~~~s~----~-g~~l~sg~~Dg~v~vwd~~~~  453 (513)
                      +...||+ -.-..+.+|.+......       .+..+..|.=..+...++.-|    . -.+|..=+.||.+.+|+-+.-
T Consensus        87 ~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~  165 (418)
T PF14727_consen   87 EDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF  165 (418)
T ss_pred             CcceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence            1223333 33345556655311110       222222343333333344433    2 246777899999999996554


Q ss_pred             eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          454 ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       454 ~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      -..+.+.. --...-++|.+....|++.+.+..
T Consensus       166 ~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~  197 (418)
T PF14727_consen  166 AFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWT  197 (418)
T ss_pred             EEEEEcCC-CCCCcCeEEeecCCEEEEecCcee
Confidence            44444433 233445788888655665555533

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=89.27  E-value=22  Score=34.31  Aligned_cols=147  Identities=7%  Similarity=-0.050  Sum_probs=80.2

Q ss_pred             cEEEEEEcCCCCEEEEEeC------C----eEEEEECC-CCcEEEEeee-CCCeEEEEEecCCcEEEEEeC-CCeEEEEE
Q 037288          258 TVWTADFCTNPSQAVIGTN------L----GAAMVDME-TGMASWVCRS-KSDILAQQVIHSGNVVLCGFR-NGAIVTVD  324 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~------~----~i~vwd~~-~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd  324 (513)
                      .-+++...|+|.+.+....      .    .-.||-+. .+..+..... -.--+.|+|+||++.++.+.. .+.|.-|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            4567777888887775422      0    11345444 4555554442 334589999999977776644 57888887


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCC-eEEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDG-TVKLY  402 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg-~i~lw  402 (513)
                      +.......     .+-   ...+                      .... +...-. .+...+|++.+++-.+| .|.+|
T Consensus       192 ~d~~~g~~-----~~~---~~~~----------------------~~~~~~G~PDG-~~vDadG~lw~~a~~~g~~v~~~  240 (307)
T COG3386         192 LDPATGPI-----GGR---RGFV----------------------DFDEEPGLPDG-MAVDADGNLWVAAVWGGGRVVRF  240 (307)
T ss_pred             cCcccCcc-----CCc---ceEE----------------------EccCCCCCCCc-eEEeCCCCEEEecccCCceEEEE
Confidence            76311100     000   0000                      0001 111111 35566888876555554 89999


Q ss_pred             ecCCCCccceEEecCCCCceeEEEEEE-cCCCCEEEEEe
Q 037288          403 DHRLTTRGAVQSYEGHVNSHTRIQLGV-DQSERFVMSGG  440 (513)
Q Consensus       403 d~~~~~~~~~~~~~~h~~~v~~~~~~~-s~~g~~l~sg~  440 (513)
                      +.   +...+..+.-....+++  ++| .++.+.|+..+
T Consensus       241 ~p---dG~l~~~i~lP~~~~t~--~~FgG~~~~~L~iTs  274 (307)
T COG3386         241 NP---DGKLLGEIKLPVKRPTN--PAFGGPDLNTLYITS  274 (307)
T ss_pred             CC---CCcEEEEEECCCCCCcc--ceEeCCCcCEEEEEe
Confidence            97   44477777766555555  444 34445554433

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.92  E-value=24  Score=38.70  Aligned_cols=163  Identities=12%  Similarity=0.104  Sum_probs=96.2

Q ss_pred             EEEEECCCCcEEEEeee-----CCCeEEEEEecC-CcEEEEEeC----------CCeEEEEECCCCccccccccccccCc
Q 037288          279 AAMVDMETGMASWVCRS-----KSDILAQQVIHS-GNVVLCGFR----------NGAIVTVDVRKRQRGCSSRAGRRHRI  342 (513)
Q Consensus       279 i~vwd~~~~~~~~~~~~-----~~~V~~l~~~~~-~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~  342 (513)
                      ++++|-+|-+.....+.     ...+.++.|..| +.++++|+.          .|.|.++.......            
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------------  819 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------------  819 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------------
Confidence            67777777665554441     123566668877 567777642          24444444433111            


Q ss_pred             CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCce
Q 037288          343 PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH  422 (513)
Q Consensus       343 ~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v  422 (513)
                                            +...+.....+.+..+..|  +|+++|  +-+..|++|+..  ..+.++.-..|...+
T Consensus       820 ----------------------L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t--~~~eLr~e~~~~~~~  871 (1096)
T KOG1897|consen  820 ----------------------LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWT--TERELRIECNISNPI  871 (1096)
T ss_pred             ----------------------eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEcc--ccceehhhhcccCCe
Confidence                                  1112233334555555555  466665  456789999985  333555556677777


Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEe-cCCCCCeEEEEEcCCCceEEeeCC
Q 037288          423 TRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFED-KFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       423 ~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~-~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      ..  +...-.|..++.|..-+.+.+-..+..+  ....- ..+..+.+++.+-.+..++.+...
T Consensus       872 ~a--L~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~  933 (1096)
T KOG1897|consen  872 IA--LDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS  933 (1096)
T ss_pred             EE--EEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Confidence            66  5555678899999888877776555444  43332 234566778877776655555443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.44  E-value=32  Score=36.94  Aligned_cols=163  Identities=11%  Similarity=-0.009  Sum_probs=88.6

Q ss_pred             CCEEEEEeCCeEEEEECCCCcEE-------EEee----------------eCCCeEEEEEec--CCcEEEEEeCCCeEEE
Q 037288          268 PSQAVIGTNLGAAMVDMETGMAS-------WVCR----------------SKSDILAQQVIH--SGNVVLCGFRNGAIVT  322 (513)
Q Consensus       268 g~~l~s~s~~~i~vwd~~~~~~~-------~~~~----------------~~~~V~~l~~~~--~~~~l~sg~~dg~i~i  322 (513)
                      ..+++++..+.|.||+...-...       ....                .+..|.-+....  +..+|+.+..||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            77888888999999987643211       1100                011244443332  3468999999999999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEc--CCCCEEEEEecCCeEE
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQ--LYDQYFLASSMDGTVK  400 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~s~dg~i~  400 (513)
                      |.+..--..  +...   ....... .           ......|...+....++-.+ +++  ...+++|+++....|.
T Consensus       129 Yyt~~I~~~--i~~~---~~~~~~~-~-----------~r~~i~P~f~~~v~~SaWGL-dIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  129 YYTETIIEA--IERF---SEDNDSG-F-----------SRLKIKPFFHLRVGASAWGL-DIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             EEHHHHHHH--HHhh---ccccccc-c-----------ccccCCCCeEeecCCceeEE-EEEecCcceEEEEecCCceEE
Confidence            976421100  0011   0000000 0           00112344455555555555 333  5677888888888899


Q ss_pred             EEecCCCCcc-ceEEecCCCCceeEEEEEEcC-----CCC-EEEEEeCCCcEEEEeC
Q 037288          401 LYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-----SER-FVMSGGEDCKLRIWSI  450 (513)
Q Consensus       401 lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-----~g~-~l~sg~~Dg~v~vwd~  450 (513)
                      ||-+...+.. ....-..|...|.+  ++|-+     +|. +|++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~--VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPN--VSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCe--eEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8876532222 11111113444555  55533     233 7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.17  E-value=26  Score=33.93  Aligned_cols=218  Identities=7%  Similarity=-0.021  Sum_probs=111.0

Q ss_pred             EEEcCCCCEEEEEe-----------CCeEEEEECCCCcEEEEeeeCC--------CeEEEEEecCCcEEEEE--eCCCeE
Q 037288          262 ADFCTNPSQAVIGT-----------NLGAAMVDMETGMASWVCRSKS--------DILAQQVIHSGNVVLCG--FRNGAI  320 (513)
Q Consensus       262 ~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~~~~~~--------~V~~l~~~~~~~~l~sg--~~dg~i  320 (513)
                      +..+|+++.+.++.           .+-|.+||..+-.....+.-+.        ....++++.||++++..  +--..|
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV  120 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV  120 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence            56789999887653           2338999999987665444221        12456788899876665  345688


Q ss_pred             EEEECCCCccccccccccc-------cCcCeEEEeeCCeEEEeEeecccCcccceeEeec--CCCceEEEEEcCCCCEEE
Q 037288          321 VTVDVRKRQRGCSSRAGRR-------HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~  391 (513)
                      .|.|+...+... ....++       -......+|-.-.+++-..+...........+.+  .+++..-..+...+..++
T Consensus       121 tVVDl~~~kvv~-ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~  199 (342)
T PF06433_consen  121 TVVDLAAKKVVG-EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY  199 (342)
T ss_dssp             EEEETTTTEEEE-EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEE
T ss_pred             EEEECCCCceee-eecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEE
Confidence            899998776432 001111       1111122211113333323321111111111222  112222223334455566


Q ss_pred             EEecCCeEEEEecCCCCccceEEecCCC----------CceeEEEEEEcCCCCEEEEE---eCCC-------cEEEEeCC
Q 037288          392 ASSMDGTVKLYDHRLTTRGAVQSYEGHV----------NSHTRIQLGVDQSERFVMSG---GEDC-------KLRIWSIR  451 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~----------~~v~~~~~~~s~~g~~l~sg---~~Dg-------~v~vwd~~  451 (513)
                      --+.+|.|+--|+.-........+.--.          +....  +++++..+.|+.-   +.+|       .|.++|+.
T Consensus       200 F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~--~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~  277 (342)
T PF06433_consen  200 FVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL--IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK  277 (342)
T ss_dssp             EEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS---EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred             EEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee--eeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence            5788999998888521111333332111          11112  6777766555442   2222       48888999


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCC--CceEEeeCC
Q 037288          452 SGELVFEDKFSNSVPSAVCWRTQ--RSMGPQIEG  483 (513)
Q Consensus       452 ~~~~~~~~~~~~~~v~~v~~~p~--~~~~~t~~~  483 (513)
                      +++.+..+.. ..++.+++.+.+  ..+++.+..
T Consensus       278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~  310 (342)
T PF06433_consen  278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAG  310 (342)
T ss_dssp             TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETT
T ss_pred             CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCC
Confidence            9999999865 345778888887  455555543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.14  E-value=28  Score=34.60  Aligned_cols=58  Identities=10%  Similarity=-0.034  Sum_probs=36.2

Q ss_pred             EEEEcCCCCEEEEEeCC-------------------CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          426 QLGVDQSERFVMSGGED-------------------CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~D-------------------g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .+.|.|||.+.++-+..                   |.|.-++..+++. ..+...-.-...++|+|++.++++...+
T Consensus       128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence            37889999876655421                   4456666655543 2332222235789999998888876643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.89  E-value=24  Score=33.21  Aligned_cols=153  Identities=10%  Similarity=0.036  Sum_probs=93.7

Q ss_pred             EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288          290 SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH  369 (513)
Q Consensus       290 ~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~  369 (513)
                      +......+-+..+.++  +++++.+..+.-++|.|+.++.... +..+..-.                            
T Consensus        80 ~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~-~~~~lnt~----------------------------  128 (370)
T COG5276          80 LSVINARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT-LIGFLNTD----------------------------  128 (370)
T ss_pred             EEEEehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcc-eeccccCC----------------------------
Confidence            3334455567777776  5677888888889999999886432 11111000                            


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                            ...-  .+.-.|++..++..|.-..+.|+..++.. ....+......-  ..+++|  |++-..+..|+-+.+-
T Consensus       129 ------gyay--gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~--~~v~IS--Gn~AYvA~~d~GL~iv  196 (370)
T COG5276         129 ------GYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT--HDVAIS--GNYAYVAWRDGGLTIV  196 (370)
T ss_pred             ------ceEE--EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc--eeEEEe--cCeEEEEEeCCCeEEE
Confidence                  1111  12235899998887777888999743333 223333322221  224554  8888888999999999


Q ss_pred             eCCCCe---EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          449 SIRSGE---LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       449 d~~~~~---~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |+.+..   ++..... +..+.++..+++..+++--+..+.
T Consensus       197 DVSnp~sPvli~~~n~-g~g~~sv~vsdnr~y~vvy~egvl  236 (370)
T COG5276         197 DVSNPHSPVLIGSYNT-GPGTYSVSVSDNRAYLVVYDEGVL  236 (370)
T ss_pred             EccCCCCCeEEEEEec-CCceEEEEecCCeeEEEEcccceE
Confidence            997653   3333333 335788888888776665555444

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.76  E-value=3.2  Score=26.05  Aligned_cols=40  Identities=5%  Similarity=0.033  Sum_probs=29.1

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEEEE
Q 037288          431 QSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAVCW  471 (513)
Q Consensus       431 ~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~  471 (513)
                      |++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5677776655 4789999999999998887763 33445554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA03098 kelch-like protein; Provisional

Probab=87.72  E-value=19  Score=37.84  Aligned_cols=67  Identities=6%  Similarity=0.072  Sum_probs=35.2

Q ss_pred             CCCEEEEEecC------CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC--------cEEEEeCC
Q 037288          386 YDQYFLASSMD------GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC--------KLRIWSIR  451 (513)
Q Consensus       386 ~~~~l~s~s~d------g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg--------~v~vwd~~  451 (513)
                      +++.++.|+.+      ..+..||+.......+..+.......   ++ ...++.+.+.||.+.        .+.+||..
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~---~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  464 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG---CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPV  464 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc---eE-EEECCEEEEECCccCCCCCcccceEEEecCC
Confidence            57777777732      35788888632222222221111111   11 223466667776532        38889988


Q ss_pred             CCeEE
Q 037288          452 SGELV  456 (513)
Q Consensus       452 ~~~~~  456 (513)
                      +++-.
T Consensus       465 ~~~W~  469 (534)
T PHA03098        465 TNKWT  469 (534)
T ss_pred             CCcee
Confidence            76644

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.19  E-value=10  Score=38.01  Aligned_cols=79  Identities=19%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-----------------EEEEEeCCC
Q 037288          381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-----------------FVMSGGEDC  443 (513)
Q Consensus       381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-----------------~l~sg~~Dg  443 (513)
                      +..+|.+++.|+...=|.|.++|+.  ....++.++|..+.-..+--......+                 +++-+-.-|
T Consensus       313 i~~sP~~~laA~tDslGRV~LiD~~--~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg  390 (415)
T PF14655_consen  313 ICLSPSGRLAAVTDSLGRVLLIDVA--RGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG  390 (415)
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECC--CChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence            5789999998888888999999996  444777788776653222112222111                 234567789


Q ss_pred             cEEEEeCCCCeEEEEecC
Q 037288          444 KLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~~~  461 (513)
                      .|-||++++|..+..+..
T Consensus       391 ~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  391 ILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEecCCCCEEEEEEe
Confidence            999999999999988765

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.03  E-value=3.3  Score=43.71  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             CCCCEEEEEecCCeEEEEecCCCC-cc-ceE--EecCC------------------CCceeEEEEEEcC----CCCEEEE
Q 037288          385 LYDQYFLASSMDGTVKLYDHRLTT-RG-AVQ--SYEGH------------------VNSHTRIQLGVDQ----SERFVMS  438 (513)
Q Consensus       385 ~~~~~l~s~s~dg~i~lwd~~~~~-~~-~~~--~~~~h------------------~~~v~~~~~~~s~----~g~~l~s  438 (513)
                      .+...|+++..||.+......... .+ ...  .+..+                  .........+++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            367788888999998888765310 11 111  11100                  0111223355555    6789999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEe
Q 037288          439 GGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       439 g~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      .+.|+++|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997664

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.44  E-value=36  Score=37.40  Aligned_cols=26  Identities=12%  Similarity=0.229  Sum_probs=23.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288          435 FVMSGGEDCKLRIWSIRSGELVFEDK  460 (513)
Q Consensus       435 ~l~sg~~Dg~v~vwd~~~~~~~~~~~  460 (513)
                      .++.+..+|.+++.|-++|+++....
T Consensus       461 ~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       461 ALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EEEEECCCCEEEEEECCCCCEEeece
Confidence            78999999999999999999888643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=86.42  E-value=25  Score=37.34  Aligned_cols=60  Identities=13%  Similarity=0.049  Sum_probs=37.5

Q ss_pred             CceeEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCeE-E---EEecC-CCCCeEEEEEcCCCceEEeeC
Q 037288          420 NSHTRIQLGVDQSERFVMSGGEDCKLRI---WSIRSGEL-V---FEDKF-SNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~sg~~Dg~v~v---wd~~~~~~-~---~~~~~-~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      +.+..  +.|||||..|+... +|.|++   -....|+. +   ..+.. -...+.++.|.++..+++...
T Consensus       448 g~Iss--l~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~  515 (591)
T PRK13616        448 GPISE--LQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS  515 (591)
T ss_pred             CCcCe--EEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec
Confidence            44555  88999999887765 577877   44445541 1   11222 233468899999976555444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.20  E-value=33  Score=32.96  Aligned_cols=96  Identities=10%  Similarity=-0.002  Sum_probs=51.4

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCeE-EEEECCCCc-EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC-cc-
Q 037288          255 FKCTVWTADFCTNPSQAVIGTNLGA-AMVDMETGM-ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR-QR-  330 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~~~i-~vwd~~~~~-~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~-  330 (513)
                      -...+..+.-+++|+++++++.+.+ .-||--... ..........|.++.|.|++.+.+.+ +.|.|+.=+.... .. 
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            3367888999999999999988874 567754322 22222245679999999998877765 8899998872211 11 


Q ss_pred             ccccccccccCcCeEEEeeCC
Q 037288          331 GCSSRAGRRHRIPYSRLQRND  351 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~  351 (513)
                      ...+.....-...+..++|.+
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~  242 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRP  242 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESS
T ss_pred             ccccCCcccCceeeEEEEecC
Confidence            000111222233467788876

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=85.86  E-value=2.9  Score=26.76  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=23.3

Q ss_pred             CcEEEEEEcCCC---CEEEEEeC-CeEEEEECCCC
Q 037288          257 CTVWTADFCTNP---SQAVIGTN-LGAAMVDMETG  287 (513)
Q Consensus       257 ~~V~~~~~s~~g---~~l~s~s~-~~i~vwd~~~~  287 (513)
                      ++|.++.|+|++   .+|+.+-+ +.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   47876644 55999999853

It contains a characteristic DLL sequence motif.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=85.76  E-value=0.65  Score=49.49  Aligned_cols=74  Identities=9%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             ccccCcEEEEEEcC---CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEE-----------EEecCCcEEEEEeCC
Q 037288          253 ASFKCTVWTADFCT---NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQ-----------QVIHSGNVVLCGFRN  317 (513)
Q Consensus       253 ~~h~~~V~~~~~s~---~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l-----------~~~~~~~~l~sg~~d  317 (513)
                      ......+.-+.|+|   +.-++..+- ++.+++.+..+.....+..|...+..+           ..+|||..++.++.|
T Consensus       177 ~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d  256 (1283)
T KOG1916|consen  177 TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD  256 (1283)
T ss_pred             CcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence            33344555666665   556666664 344666555433211111133222222           268999999999999


Q ss_pred             CeEEEEECC
Q 037288          318 GAIVTVDVR  326 (513)
Q Consensus       318 g~i~iwd~~  326 (513)
                      |.++.|.+.
T Consensus       257 G~v~f~Qiy  265 (1283)
T KOG1916|consen  257 GSVGFYQIY  265 (1283)
T ss_pred             Cccceeeee
Confidence            999988764

>PRK10115 protease 2; Provisional

Probab=85.64  E-value=59  Score=35.41  Aligned_cols=70  Identities=7%  Similarity=-0.024  Sum_probs=46.8

Q ss_pred             CcEEEEEEcCCCCEEEEEeCC------eEEEEECCCCcEEE-EeeeCCCeEEEEEecCCcEEEEEeCC------CeEEEE
Q 037288          257 CTVWTADFCTNPSQAVIGTNL------GAAMVDMETGMASW-VCRSKSDILAQQVIHSGNVVLCGFRN------GAIVTV  323 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~------~i~vwd~~~~~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~d------g~i~iw  323 (513)
                      -.+..+.++|||++|+.+.|.      .+++.|+.+|..+. .+...  -..++|.+|++.|+....+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            356778899999999976431      27888998886321 11111  1569999999755554332      467888


Q ss_pred             ECCCC
Q 037288          324 DVRKR  328 (513)
Q Consensus       324 d~~~~  328 (513)
                      ++.++
T Consensus       205 ~lgt~  209 (686)
T PRK10115        205 TIGTP  209 (686)
T ss_pred             ECCCC
Confidence            88877

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.53  E-value=43  Score=33.67  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=58.3

Q ss_pred             cEEEEEEcCCCCEEEEEe---------------------CCeEEEEECCCCcEEEEeeeC---CCeEEEEEecC--CcEE
Q 037288          258 TVWTADFCTNPSQAVIGT---------------------NLGAAMVDMETGMASWVCRSK---SDILAQQVIHS--GNVV  311 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s---------------------~~~i~vwd~~~~~~~~~~~~~---~~V~~l~~~~~--~~~l  311 (513)
                      --+++-|.|..+.++++.                     ..++.+||+.+.+.+..+.-.   .....|.|..+  ...=
T Consensus       182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g  261 (461)
T PF05694_consen  182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG  261 (461)
T ss_dssp             ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred             CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence            456777788777777654                     235999999999998888743   23678888754  3333


Q ss_pred             EEE-eCCCeEEEEEC-CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCE
Q 037288          312 LCG-FRNGAIVTVDV-RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQY  389 (513)
Q Consensus       312 ~sg-~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  389 (513)
                      ++| ...++|..|-- ..++...         ..|..|.--+   ...|.+..- +.  ..-..+.-++.+ .+|.|.++
T Consensus       262 Fvg~aLss~i~~~~k~~~g~W~a---------~kVi~ip~~~---v~~~~lp~m-l~--~~~~~P~LitDI-~iSlDDrf  325 (461)
T PF05694_consen  262 FVGCALSSSIWRFYKDDDGEWAA---------EKVIDIPAKK---VEGWILPEM-LK--PFGAVPPLITDI-LISLDDRF  325 (461)
T ss_dssp             EEEEE--EEEEEEEE-ETTEEEE---------EEEEEE--EE-----SS---GG-GG--GG-EE------E-EE-TTS-E
T ss_pred             EEEEeccceEEEEEEcCCCCeee---------eEEEECCCcc---cCccccccc-cc--ccccCCCceEeE-EEccCCCE
Confidence            333 23455555433 3333211         0000000000   000000000 00  000012334443 67788888


Q ss_pred             EEEEe-cCCeEEEEecC
Q 037288          390 FLASS-MDGTVKLYDHR  405 (513)
Q Consensus       390 l~s~s-~dg~i~lwd~~  405 (513)
                      |..++ .+|.|+.||+.
T Consensus       326 LYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEEEETTTTEEEEEE-S
T ss_pred             EEEEcccCCcEEEEecC
Confidence            87766 49999999996

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.21  E-value=51  Score=35.94  Aligned_cols=72  Identities=13%  Similarity=0.075  Sum_probs=45.2

Q ss_pred             EEEcCCCCEEEEEecCCeEEEEecCC--C-----C---cc-ceEEec------CCCCceeEEEEEEcCC---CCEEEEEe
Q 037288          381 QSLQLYDQYFLASSMDGTVKLYDHRL--T-----T---RG-AVQSYE------GHVNSHTRIQLGVDQS---ERFVMSGG  440 (513)
Q Consensus       381 ~~~~~~~~~l~s~s~dg~i~lwd~~~--~-----~---~~-~~~~~~------~h~~~v~~~~~~~s~~---g~~l~sg~  440 (513)
                      +.++++|.+++..+..|. .|-.+..  .     .   .. ..+++.      .-........+.|+|.   +.+|+.=.
T Consensus        90 i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt  168 (717)
T PF10168_consen   90 ISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT  168 (717)
T ss_pred             EEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence            467889999988887654 4444421  0     0   00 111221      1122344566899986   58999999


Q ss_pred             CCCcEEEEeCCCC
Q 037288          441 EDCKLRIWSIRSG  453 (513)
Q Consensus       441 ~Dg~v~vwd~~~~  453 (513)
                      .|+++++||+...
T Consensus       169 sdn~lR~y~~~~~  181 (717)
T PF10168_consen  169 SDNTLRLYDISDP  181 (717)
T ss_pred             cCCEEEEEecCCC
Confidence            9999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.73  E-value=16  Score=40.76  Aligned_cols=90  Identities=13%  Similarity=0.060  Sum_probs=59.3

Q ss_pred             CCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---C-
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK---F-  461 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~---~-  461 (513)
                      ....++...|+.|++..+.  ... .+.++. -....++  ++|+|.|+.++.|-..|++.-|... .+....+.   . 
T Consensus       168 p~n~av~l~dlsl~V~~~~--~~~~~v~s~p-~t~~~Ta--v~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~  241 (1405)
T KOG3630|consen  168 PLNSAVDLSDLSLRVKSTK--QLAQNVTSFP-VTNSQTA--VLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE  241 (1405)
T ss_pred             cchhhhhccccchhhhhhh--hhhhhhcccC-cccceee--EEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC
Confidence            3456777889999888774  222 333332 2333444  9999999999999999999988753 33233321   1 


Q ss_pred             CCCCeEEEEEcCCCceEEeeC
Q 037288          462 SNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       462 ~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      ....|.+|+|-....+++.-+
T Consensus       242 e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  242 ENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             CCcceeEEEEecceeEEEEec
Confidence            146799999998865555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.41  E-value=9.5  Score=34.74  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=45.9

Q ss_pred             EcCCCCEEEEEecCCeEEEEecCCCCccce------EEe-c-------CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          383 LQLYDQYFLASSMDGTVKLYDHRLTTRGAV------QSY-E-------GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       383 ~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~------~~~-~-------~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                      +..++++|++-+.+|.+++||+..  .+.+      ..+ .       .....|..  +.++.+|.-|++-+ +|..+.|
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~--~k~~~~~~Si~pll~~~~~~~~~~~~~i~~--~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKK--GKAVLPPVSIAPLLNSSPVSDKSSSPNITS--CSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCC--CeeccCCccHHHHhcccccccCCCCCcEEE--EEEcCCCCEEEEEe-CCCEEEe
Confidence            344789999999999999999973  3211      111 1       13333433  67778887666644 6889999


Q ss_pred             eCCCCeEEE
Q 037288          449 SIRSGELVF  457 (513)
Q Consensus       449 d~~~~~~~~  457 (513)
                      +..-+.-+.
T Consensus        93 ~~~L~~W~~  101 (219)
T PF07569_consen   93 SPDLGCWIR  101 (219)
T ss_pred             ccccceeEE
Confidence            876555444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.37  E-value=29  Score=37.72  Aligned_cols=89  Identities=12%  Similarity=0.050  Sum_probs=47.8

Q ss_pred             CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEe--ecCC
Q 037288          298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTT--FMPS  375 (513)
Q Consensus       298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~--~~~~  375 (513)
                      .|..|.++|+|.+|+..|..|.+.+.=.+....   ...+.+-...|.|-.+.-               ....+  ....
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~---~~~~~~g~~~i~Crt~~v---------------~~~~~~~~~~~  147 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGK---NGEFEDGKKEINCRTVPV---------------DERFFTSNSSL  147 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCc---cccccCCCcceeEEEEEe---------------chhhccCCCCc
Confidence            488899999999988888766544433322111   112222222333211100               00000  0111


Q ss_pred             CceEEEEEcC---CCCEEEEEecCCeEEEEecC
Q 037288          376 SISCLQSLQL---YDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       376 ~v~~~~~~~~---~~~~l~s~s~dg~i~lwd~~  405 (513)
                      .+.. +.|+|   ++..|++-+.|+.+++||+.
T Consensus       148 ~i~q-v~WhP~s~~~~~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  148 EIKQ-VRWHPWSESDSHLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             eEEE-EEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence            2233 34444   46889999999999999996

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.11  E-value=17  Score=38.98  Aligned_cols=109  Identities=10%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             CCCEEEEEeCCe-EEEEECCC-------C-------------cEEEEeeeCCCeEEEEEe--cCCcEEEEEeCCCeEEEE
Q 037288          267 NPSQAVIGTNLG-AAMVDMET-------G-------------MASWVCRSKSDILAQQVI--HSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       267 ~g~~l~s~s~~~-i~vwd~~~-------~-------------~~~~~~~~~~~V~~l~~~--~~~~~l~sg~~dg~i~iw  323 (513)
                      +...|+.+.|++ |.+|.+++       .             ++-..+.....+++++++  ...++||+++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            445666665555 89995521       0             012223345678999999  778999999999999988


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecCCeEEEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMDGTVKLY  402 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~lw  402 (513)
                      -............-..|...|.+|+|-+                             ....+.|. .+++++-.|.+.+|
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~-----------------------------~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLD-----------------------------DDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeec-----------------------------CCCCCccceEEEEEeccCcEEEE
Confidence            6654321110111112444555555522                             01122343 67778888998888


Q ss_pred             ec
Q 037288          403 DH  404 (513)
Q Consensus       403 d~  404 (513)
                      ++
T Consensus       244 ~I  245 (717)
T PF08728_consen  244 KI  245 (717)
T ss_pred             EE
Confidence            87

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.89  E-value=31  Score=30.79  Aligned_cols=64  Identities=9%  Similarity=0.124  Sum_probs=35.4

Q ss_pred             CCCEEEEEe---CCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCcc
Q 037288          267 NPSQAVIGT---NLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQR  330 (513)
Q Consensus       267 ~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~  330 (513)
                      +|.++.+.+   ...|++||+.+|+.+....-. ..++.=-...-|..+..- =.+|.-..+|.++-+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~  123 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE  123 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh
Confidence            444554432   334999999999877655433 123222122223333222 2478888888877654

>PHA02790 Kelch-like protein; Provisional

Probab=83.89  E-value=33  Score=35.52  Aligned_cols=140  Identities=11%  Similarity=-0.008  Sum_probs=63.8

Q ss_pred             CCcEEEEEeCC-----CeEEEEECCCCccccccccccccCcCeEEEeeCC-eEEEeE---------eecccCcccceeEe
Q 037288          307 SGNVVLCGFRN-----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ---------WFELKANIWPSHTT  371 (513)
Q Consensus       307 ~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~---------w~~~~~~~~~~~~~  371 (513)
                      ++.+++.||.+     ..+..||..+..... +..+.........+.... .++.|+         |+...+....... 
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCC-
Confidence            45666777754     357778888765433 333333332233333333 333343         3322222111111 


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEecCC---eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          372 FMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       372 ~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                       .+..........-+++..+.|+.++   .+..||.+......+..+....... +  + ..-+|++.+.|+   .+.+|
T Consensus       349 -l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~--~-~~~~~~IYv~GG---~~e~y  420 (480)
T PHA02790        349 -LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-C--A-LVFGRRLFLVGR---NAEFY  420 (480)
T ss_pred             -CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-e--E-EEECCEEEEECC---ceEEe
Confidence             1111111112223677888887653   4667887632222222222111111 1  1 123466556664   47789


Q ss_pred             eCCCCeEE
Q 037288          449 SIRSGELV  456 (513)
Q Consensus       449 d~~~~~~~  456 (513)
                      |..+.+-.
T Consensus       421 dp~~~~W~  428 (480)
T PHA02790        421 CESSNTWT  428 (480)
T ss_pred             cCCCCcEe
Confidence            88876644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.80  E-value=39  Score=31.77  Aligned_cols=60  Identities=8%  Similarity=0.016  Sum_probs=36.4

Q ss_pred             CCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe
Q 037288          205 DGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT  275 (513)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s  275 (513)
                      ++|....+..+--......|.+.+|+....-+           .+-++..|.-.-..+.|.+||+.++.+.
T Consensus       121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fq-----------rvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQ-----------RVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cCCCCcEEEeecCCCCCCCceEEEEecccccc-----------eecccccCCcCcceeEEecCCcEEEEeC
Confidence            33443333333333444567777787763322           2444666777778899999999988653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=83.75  E-value=61  Score=34.02  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=43.9

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCC--eEE----------EEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSD--ILA----------QQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~--V~~----------l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ++.+++++.++.|.-.|..+|+.++.+.....  +..          +++  .+..|+.++.|+.+...|.++++...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            45555555667788899999999888764321  211          122  23467778889999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.08  E-value=7.2  Score=34.02  Aligned_cols=30  Identities=13%  Similarity=0.103  Sum_probs=25.4

Q ss_pred             CeEEEEEecCC------cEEEEEeCCCeEEEEECCC
Q 037288          298 DILAQQVIHSG------NVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       298 ~V~~l~~~~~~------~~l~sg~~dg~i~iwd~~~  327 (513)
                      .|.+++|+|.|      -+|++.+.++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999955      3899999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.91  E-value=52  Score=32.63  Aligned_cols=68  Identities=15%  Similarity=0.001  Sum_probs=39.4

Q ss_pred             CcEEEEEEcCCCCEEEEEe-------------CCeEEEEECCC--Cc--EEEEee-eCCCeEEEEEecCCcEEEEEeCCC
Q 037288          257 CTVWTADFCTNPSQAVIGT-------------NLGAAMVDMET--GM--ASWVCR-SKSDILAQQVIHSGNVVLCGFRNG  318 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s-------------~~~i~vwd~~~--~~--~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg  318 (513)
                      .....++|.++|+++++-.             .+.|.+++-..  |+  ....+. .-.....+++.++| + +++..+.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCe
Confidence            3556889999999887642             12576665432  33  223333 33346889999888 4 4444444


Q ss_pred             eEEEEECC
Q 037288          319 AIVTVDVR  326 (513)
Q Consensus       319 ~i~iwd~~  326 (513)
                      ..++.|..
T Consensus        92 i~~~~d~~   99 (367)
T TIGR02604        92 ILFLRDKD   99 (367)
T ss_pred             EEEEeCCC
Confidence            33344553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.08  E-value=13  Score=37.46  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             ceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCC--CeEEEEEecCC---------------
Q 037288          247 STMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKS--DILAQQVIHSG---------------  308 (513)
Q Consensus       247 ~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~--~V~~l~~~~~~---------------  308 (513)
                      +....+......+.++..+|++++.|+..+ +.|.++|+.++..++..+.-.  .+.-+.....+               
T Consensus       298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~  377 (415)
T PF14655_consen  298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR  377 (415)
T ss_pred             ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence            345556667778999999999988887633 459999999987666554211  11111111110               


Q ss_pred             ---cEEEEEeCCCeEEEEECCCCcccc
Q 037288          309 ---NVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       309 ---~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                         -+++-+-.-|.|.||+++.+..+.
T Consensus       378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~  404 (415)
T PF14655_consen  378 FALFLVIYAPRRGILEVWSMRQGPRVA  404 (415)
T ss_pred             ceEEEEEEeccCCeEEEEecCCCCEEE
Confidence               134555678999999999987644

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.90  E-value=78  Score=33.94  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288          425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..+.+||+.++|+-=..+|.|.+-+....+.+.++... ..+.-.++|..+..++.+-...+.
T Consensus       220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~  282 (829)
T KOG2280|consen  220 VKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLM  282 (829)
T ss_pred             EEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEE
Confidence            44788999999999899999999999888888776522 233447888877655555444443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.82  E-value=28  Score=28.71  Aligned_cols=77  Identities=14%  Similarity=0.121  Sum_probs=52.0

Q ss_pred             eccccCcEEEEEEcC-----CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEec----CCcEEEEEeCCCeEEE
Q 037288          252 VASFKCTVWTADFCT-----NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIH----SGNVVLCGFRNGAIVT  322 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~-----~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~----~~~~l~sg~~dg~i~i  322 (513)
                      +..-...|.+++--+     +...|+.|+...+.+||++....+....-+..|.++.+-.    +..++++| .+..|.-
T Consensus        43 ~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~G  121 (136)
T PF14781_consen   43 FLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQG  121 (136)
T ss_pred             EEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEE
Confidence            333445677765544     4558889999999999999887665555667788887753    23556665 4567777


Q ss_pred             EECCCCc
Q 037288          323 VDVRKRQ  329 (513)
Q Consensus       323 wd~~~~~  329 (513)
                      ||....+
T Consensus       122 fd~~G~e  128 (136)
T PF14781_consen  122 FDYEGNE  128 (136)
T ss_pred             eCCCCcE
Confidence            7766544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=81.59  E-value=46  Score=31.08  Aligned_cols=127  Identities=12%  Similarity=0.021  Sum_probs=71.8

Q ss_pred             EEEEeeeCCC--eEEEEEecCCcEEEEEeCCC--eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCc
Q 037288          289 ASWVCRSKSD--ILAQQVIHSGNVVLCGFRNG--AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKAN  364 (513)
Q Consensus       289 ~~~~~~~~~~--V~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~  364 (513)
                      .+..+.|...  ...+.|..+|.++-+.+.-|  .|+.+|+.+++... ...+...                        
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~-~~~l~~~------------------------   89 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ-SVPLPPR------------------------   89 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE-EEE-TTT------------------------
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE-EEECCcc------------------------
Confidence            4556667665  57788877888888888766  78889998876432 1111110                        


Q ss_pred             ccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          365 IWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       365 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                                --...+..+  +++.+...=.++...+||..  ....+.++.- .+.-..  ++  .+|+.|+.+.....
T Consensus        90 ----------~FgEGit~~--~d~l~qLTWk~~~~f~yd~~--tl~~~~~~~y-~~EGWG--Lt--~dg~~Li~SDGS~~  150 (264)
T PF05096_consen   90 ----------YFGEGITIL--GDKLYQLTWKEGTGFVYDPN--TLKKIGTFPY-PGEGWG--LT--SDGKRLIMSDGSSR  150 (264)
T ss_dssp             ------------EEEEEEE--TTEEEEEESSSSEEEEEETT--TTEEEEEEE--SSS--E--EE--ECSSCEEEE-SSSE
T ss_pred             ----------ccceeEEEE--CCEEEEEEecCCeEEEEccc--cceEEEEEec-CCcceE--EE--cCCCEEEEECCccc
Confidence                      000111111  34444445568899999986  4446666652 233233  55  45666666655778


Q ss_pred             EEEEeCCCCeEEEEe
Q 037288          445 LRIWSIRSGELVFED  459 (513)
Q Consensus       445 v~vwd~~~~~~~~~~  459 (513)
                      ++++|..+.+....+
T Consensus       151 L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  151 LYFLDPETFKEVRTI  165 (264)
T ss_dssp             EEEE-TTT-SEEEEE
T ss_pred             eEEECCcccceEEEE
Confidence            999998877665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.58  E-value=32  Score=35.04  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=51.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEEC----------CCCcEEEEee------------eCCCeEEEEEecCC---cE
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDM----------ETGMASWVCR------------SKSDILAQQVIHSG---NV  310 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~----------~~~~~~~~~~------------~~~~V~~l~~~~~~---~~  310 (513)
                      .-.|..+..++.|..++..+-++|.|..+          +.|+.....+            ..-.+...+|+|+.   ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            35789999999999988666556544433          3443222111            11236778899976   56


Q ss_pred             EEEEeCCCeEEEEECCCCccc
Q 037288          311 VLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       311 l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      |..-+.|..|++||+......
T Consensus       183 L~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEEecCcEEEEEecCCcchh
Confidence            777778999999999877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	513
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.98
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.9
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.88
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.88
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.8
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.76
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.72
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.72
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.71
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.71
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.7
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.7
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.69
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.68
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.66
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.65
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.64
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.64
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.63
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.6
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.58
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.58
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.57
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.54
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.54
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.52
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.51
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.5
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.47
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.45
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.42
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.42
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.4
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.4
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.36
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.35
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.35
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.34
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.31
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.28
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.25
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.19
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.18
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.15
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.15
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.1
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.1
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.07
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.04
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.04
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.03
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.03
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.03
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.0
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.99
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.99
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.96
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.91
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.9
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.87
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.86
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.85
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.79
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.78
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.76
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.75
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.74
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.72
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.63
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.61
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.58
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.43
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.42
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.4
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.37
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.33
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.17
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.0
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.99
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.99
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.94
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.8
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.74
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.73
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.7
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.59
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.51
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.51
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.5
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.5
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.5
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.43
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.38
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.16
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.15
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.11
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.11
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.99
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.79
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.77
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.65
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.63
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.6
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.51
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.51
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.18
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.03
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.02
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.96
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.83
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.78
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.73
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.72
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.16
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.01
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	94.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.66
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.59
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.92
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.88
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	93.61
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.36
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.26
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.06
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.03
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.02
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.01
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.83
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.59
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.54
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.27
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.17
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.95
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.75
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.69
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.46
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.16
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.05
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.78
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.68
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.5
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.33
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.27
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	88.79
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	87.13
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.55
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	82.58
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	80.08
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	80.05

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-33  Score=271.99  Aligned_cols=271  Identities=15%  Similarity=0.213  Sum_probs=210.9

Q ss_pred             eCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEE
Q 037288          115 QTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIK  194 (513)
Q Consensus       115 ~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~  194 (513)
                      .+|++....++|++|+.||.|++|++......    +.+.          -                  -.+...|.++.
T Consensus        40 ~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~----~~~~----------l------------------~gh~~~v~~~~   87 (321)
T 3ow8_A           40 WGTNKKENSETVVTGSLDDLVKVWKWRDERLD----LQWS----------L------------------EGHQLGVVSVD   87 (321)
T ss_dssp             EC-------CEEEEEETTSCEEEEEEETTEEE----EEEE----------E------------------CCCSSCEEEEE
T ss_pred             EecCCCCCCCEEEEEcCCCCEEEEECCCCCee----eeee----------e------------------ccCCCCEEEEE
Confidence            55665556778999999999999998543211    1111          0                  01223344444


Q ss_pred             ecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE
Q 037288          195 LFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG  274 (513)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~  274 (513)
                      +++...          .+     ..+..+|.+.+|++.+..            .+..+..|...+++++|+|++++|++|
T Consensus        88 ~~~~~~----------~l-----~s~s~D~~i~lWd~~~~~------------~~~~~~~~~~~~~~~~~spdg~~l~~g  140 (321)
T 3ow8_A           88 ISHTLP----------IA-----ASSSLDAHIRLWDLENGK------------QIKSIDAGPVDAWTLAFSPDSQYLATG  140 (321)
T ss_dssp             ECSSSS----------EE-----EEEETTSEEEEEETTTTE------------EEEEEECCTTCCCCEEECTTSSEEEEE
T ss_pred             ECCCCC----------EE-----EEEeCCCcEEEEECCCCC------------EEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            443321          11     123457888888876432            345577888999999999999999998


Q ss_pred             eC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCe
Q 037288          275 TN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDR  352 (513)
Q Consensus       275 s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~  352 (513)
                      +. +.|++||+.+++....+. +...|.+++|+|++++|++|+.||.|++||+++++.   +..+.+|..+|.++     
T Consensus       141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l-----  212 (321)
T 3ow8_A          141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL---LHTLEGHAMPIRSL-----  212 (321)
T ss_dssp             CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCCCEE-----
T ss_pred             cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---EEEEcccCCceeEE-----
Confidence            65 559999999998776665 566799999999999999999999999999998875   44778888888774     


Q ss_pred             EEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC
Q 037288          353 VTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS  432 (513)
Q Consensus       353 ~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~  432 (513)
                                                   .|+|++++|++|+.|+.|++||++  ....+.++.+|...|..  ++|+|+
T Consensus       213 -----------------------------~~spd~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~--~~~sp~  259 (321)
T 3ow8_A          213 -----------------------------TFSPDSQLLVTASDDGYIKIYDVQ--HANLAGTLSGHASWVLN--VAFCPD  259 (321)
T ss_dssp             -----------------------------EECTTSCEEEEECTTSCEEEEETT--TCCEEEEECCCSSCEEE--EEECTT
T ss_pred             -----------------------------EEcCCCCEEEEEcCCCeEEEEECC--CcceeEEEcCCCCceEE--EEECCC
Confidence                                         456799999999999999999997  55588899999999877  899999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          433 ERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       433 g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +++|++|+.|++|++||+.+++++..+..|...|.+++|+|++.++++++.|-
T Consensus       260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            99999999999999999999999999999999999999999988888877763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-31  Score=284.47  Aligned_cols=339  Identities=12%  Similarity=0.106  Sum_probs=234.8

Q ss_pred             eeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeeccc
Q 037288          110 IELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSS  189 (513)
Q Consensus       110 ~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~  189 (513)
                      +....++|+|.    +|++|+.||.|+||++..........+.              .+...+..+.|+|++..+...+.
T Consensus        62 v~~~~~spdg~----~lasg~~d~~v~lWd~~~~~~~~~~~~~--------------~~~~~v~~v~fs~dg~~l~~~~~  123 (611)
T 1nr0_A           62 TTVAKTSPSGY----YCASGDVHGNVRIWDTTQTTHILKTTIP--------------VFSGPVKDISWDSESKRIAAVGE  123 (611)
T ss_dssp             EEEEEECTTSS----EEEEEETTSEEEEEESSSTTCCEEEEEE--------------CSSSCEEEEEECTTSCEEEEEEC
T ss_pred             eEEEEECCCCc----EEEEEeCCCCEEEeECCCCcceeeEeec--------------ccCCceEEEEECCCCCEEEEEEC
Confidence            34445788875    6999999999999998433211111111              11223666777776544332211


Q ss_pred             ----ceEEEecCC------------CCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEec
Q 037288          190 ----VSCIKLFGK------------HPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVA  253 (513)
Q Consensus       190 ----i~si~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (513)
                          ...+.+...            ...+..++|.....+    ..+..++.+.+|+...            ......+.
T Consensus       124 ~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l----~s~s~D~~v~lwd~~~------------~~~~~~l~  187 (611)
T 1nr0_A          124 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI----ISGSDDNTVAIFEGPP------------FKFKSTFG  187 (611)
T ss_dssp             CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE----EEEETTSCEEEEETTT------------BEEEEEEC
T ss_pred             CCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEE----EEEeCCCeEEEEECCC------------CeEeeeec
Confidence                112222211            111222223222211    1234577777777542            22356789


Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe--------eeCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC--------RSKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~--------~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      +|...|++++|+|+|++|++|+ |++|++||+.+++....+        .|...|.+++|+|++++|++|+.|++|++||
T Consensus       188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  267 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            9999999999999999999886 456999999999887776        4788899999999999999999999999999


Q ss_pred             CCCCccccc----------------------------------------cccccccCcCeEEEeeCC---eEEEeE----
Q 037288          325 VRKRQRGCS----------------------------------------SRAGRRHRIPYSRLQRND---RVTNEQ----  357 (513)
Q Consensus       325 ~~~~~~~~~----------------------------------------~~~~~~h~~~v~~v~~~~---~~~s~~----  357 (513)
                      +++++....                                        ...+.+|...|.+++|+|   .+++++    
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~  347 (611)
T 1nr0_A          268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH  347 (611)
T ss_dssp             TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence            987653211                                        124568999999999999   677776    


Q ss_pred             ---eecccCcccce------------------------------------------------------------------
Q 037288          358 ---WFELKANIWPS------------------------------------------------------------------  368 (513)
Q Consensus       358 ---w~~~~~~~~~~------------------------------------------------------------------  368 (513)
                         |+...+.....                                                                  
T Consensus       348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  427 (611)
T 1nr0_A          348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV  427 (611)
T ss_dssp             EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred             EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence               88764422100                                                                  


Q ss_pred             ---------------eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC
Q 037288          369 ---------------HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE  433 (513)
Q Consensus       369 ---------------~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g  433 (513)
                                     ..+.+...+.+ +.++|++++|++|+.|+.|++||+.......+.. .+|...|..  ++|+|+|
T Consensus       428 ~~~~~~v~~~~~~~~~~~~~~~~v~~-va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~--v~fspdg  503 (611)
T 1nr0_A          428 AACYKHIAIYSHGKLTEVPISYNSSC-VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS--VAFSNNG  503 (611)
T ss_dssp             EEESSEEEEEETTEEEEEECSSCEEE-EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE--EEECTTS
T ss_pred             EEeCceEEEEeCCceeeeecCCCceE-EEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE--EEECCCC
Confidence                           00001112333 5789999999999999999999996211112344 679988877  8999999


Q ss_pred             CEEEEEeCCCcEEEEeCCC-CeEEEE--ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          434 RFVMSGGEDCKLRIWSIRS-GELVFE--DKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       434 ~~l~sg~~Dg~v~vwd~~~-~~~~~~--~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ++|++++.|++|++||+.+ ++++..  +..|...|++++|+|++.++|+++.|-.
T Consensus       504 ~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~  559 (611)
T 1nr0_A          504 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS  559 (611)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCc
Confidence            9999999999999999988 666554  3448899999999999999999887754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.2e-31  Score=255.37  Aligned_cols=244  Identities=14%  Similarity=0.126  Sum_probs=201.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .+|.+.+|++.+..            .+..+..|..+|.+++|+|++++|++|+++ .|++||+.+++.+..+. |...|
T Consensus        33 ~dg~v~lWd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  100 (304)
T 2ynn_A           33 YSGRVELWNYETQV------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI  100 (304)
T ss_dssp             TTSEEEEEETTTTE------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCCcEEEEECCCCc------------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcE
Confidence            57888888876432            345688999999999999999999988755 59999999999877665 78889


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccce
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPS  368 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~  368 (513)
                      .+++|+|++++|++|+.|++|++||++++...  ...+.+|...|.+++|+|    .+++++       |+.........
T Consensus       101 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~  178 (304)
T 2ynn_A          101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT  178 (304)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEGGGTTEE--EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE
T ss_pred             EEEEEcCCCCEEEEECCCCeEEEEECCCCcch--hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence            99999999999999999999999999876431  347889999999999997    577777       98876554322


Q ss_pred             eEeecCCCceEEEEEc--CCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          369 HTTFMPSSISCLQSLQ--LYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       369 ~~~~~~~~v~~~~~~~--~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                      ....+...+..+ .+.  +++.+|++|+.|+.|++||++  ...++.++.+|...+..  ++|+|++.+|++|+.||+|+
T Consensus       179 ~~~~~~~~v~~~-~~~~~~~~~~l~s~s~D~~i~iWd~~--~~~~~~~~~~h~~~v~~--~~~~p~~~~l~s~s~Dg~i~  253 (304)
T 2ynn_A          179 LTTGQERGVNYV-DYYPLPDKPYMITASDDLTIKIWDYQ--TKSCVATLEGHMSNVSF--AVFHPTLPIIISGSEDGTLK  253 (304)
T ss_dssp             EECCCTTCEEEE-EECCSTTCCEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEE--EEECSSSSEEEEEETTSCEE
T ss_pred             eccCCcCcEEEE-EEEEcCCCCEEEEEcCCCeEEEEeCC--CCccceeeCCCCCCEEE--EEECCCCCEEEEEcCCCeEE
Confidence            222333455554 444  477899999999999999997  55689999999999877  88999999999999999999


Q ss_pred             EEeCCCCeEEEEecCCCCCeEEEEEcCCC--ceEEeeCCC
Q 037288          447 IWSIRSGELVFEDKFSNSVPSAVCWRTQR--SMGPQIEGK  484 (513)
Q Consensus       447 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~~t~~~~  484 (513)
                      +||+.+++++..+..+...+.+++|+|++  .+++++..+
T Consensus       254 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~  293 (304)
T 2ynn_A          254 IWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN  293 (304)
T ss_dssp             EEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT
T ss_pred             EEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC
Confidence            99999999999999998999999999984  246665544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.1e-31  Score=260.52  Aligned_cols=214  Identities=14%  Similarity=0.129  Sum_probs=178.5

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDIL  300 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~  300 (513)
                      .+|.+.+|++.+.....        .....+.+|...|.++.|++++.+++++.|+.|++||+.+++.+..+. |...|.
T Consensus       117 ~d~~v~iw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~  188 (340)
T 1got_B          117 LDNICSIYNLKTREGNV--------RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM  188 (340)
T ss_dssp             TTCEEEEEETTTCSBSC--------EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCeEEEEECccCCCcc--------eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence            46788888876543211        124557899999999999998886656667789999999998877766 788899


Q ss_pred             EEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEE
Q 037288          301 AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCL  380 (513)
Q Consensus       301 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~  380 (513)
                      +++|+|++++|++|+.|+.|++||++++..   ...+.+|...|.++                                 
T Consensus       189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~---~~~~~~h~~~v~~v---------------------------------  232 (340)
T 1got_B          189 SLSLAPDTRLFVSGACDASAKLWDVREGMC---RQTFTGHESDINAI---------------------------------  232 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCSE---EEEECCCSSCEEEE---------------------------------
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCee---EEEEcCCcCCEEEE---------------------------------
Confidence            999999999999999999999999998765   44778888888885                                 


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC--CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288          381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG--HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE  458 (513)
Q Consensus       381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~  458 (513)
                       .|+|++++|++|+.||.|++||++  ....+..+..  +...+..  ++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus       233 -~~~p~~~~l~s~s~d~~v~iwd~~--~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  307 (340)
T 1got_B          233 -CFFPNGNAFATGSDDATCRLFDLR--ADQELMTYSHDNIICGITS--VSFSKSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             -EECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCTTCCSCEEE--EEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -EEcCCCCEEEEEcCCCcEEEEECC--CCcEEEEEccCCcccceEE--EEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence             456699999999999999999997  4445666642  2235555  89999999999999999999999999999999


Q ss_pred             ecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          459 DKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       459 ~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +..|..+|.+++|+|++.++++++.|
T Consensus       308 ~~~h~~~v~~~~~s~dg~~l~s~s~D  333 (340)
T 1got_B          308 LAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eecCCCcEEEEEEcCCCCEEEEEcCC
Confidence            99999999999999998888887766

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-31  Score=266.90  Aligned_cols=263  Identities=13%  Similarity=0.130  Sum_probs=218.4

Q ss_pred             ecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEc
Q 037288          186 MPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFC  265 (513)
Q Consensus       186 ~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  265 (513)
                      +...|+++.+++..          ..+     ..+..+|.+.+|++.+...            ...+.+|...|.+++|+
T Consensus       107 h~~~V~~~~~~p~~----------~~l-----~s~s~Dg~i~vwd~~~~~~------------~~~l~~h~~~V~~v~~~  159 (410)
T 1vyh_C          107 HRSPVTRVIFHPVF----------SVM-----VSASEDATIKVWDYETGDF------------ERTLKGHTDSVQDISFD  159 (410)
T ss_dssp             CSSCEEEEEECSSS----------SEE-----EEEESSSCEEEEETTTCCC------------CEEECCCSSCEEEEEEC
T ss_pred             cCCcEEEEEEcCCC----------CEE-----EEEeCCCeEEEEECCCCcE------------EEEEeccCCcEEEEEEc
Confidence            45677787776544          222     1234588899998875432            35688999999999999


Q ss_pred             CCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC
Q 037288          266 TNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP  343 (513)
Q Consensus       266 ~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  343 (513)
                      |++.+|++|+. ++|++||+.+++++..+. |...|.+++|+|++++|++|+.|++|++||++++..   +..+.+|...
T Consensus       160 ~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~---~~~~~~h~~~  236 (410)
T 1vyh_C          160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC---VKTFTGHREW  236 (410)
T ss_dssp             TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE---EEEEECCSSC
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---EEEEeCCCcc
Confidence            99999998865 559999999998877665 788899999999999999999999999999998875   4588999999


Q ss_pred             eEEEeeCC---eEEEeE-------eecccCcccceeEe-ecCCCceEEEEEcCC--------------------CCEEEE
Q 037288          344 YSRLQRND---RVTNEQ-------WFELKANIWPSHTT-FMPSSISCLQSLQLY--------------------DQYFLA  392 (513)
Q Consensus       344 v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--------------------~~~l~s  392 (513)
                      |.++.+++   .+++++       |+...+...  ..+ .+...+.++ .|+|+                    +.+|++
T Consensus       237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~--~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHRHVVECI-SWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEECCCSSCEEEE-EECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcee--eEecCCCceEEEE-EEcCcccccchhhhccccccccCCCCCEEEE
Confidence            99999998   677776       988776543  233 344556665 66665                    679999


Q ss_pred             EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          393 SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       393 ~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      |+.|+.|++||++  ...++.++.+|.+.|..  ++|+|+|++|++|+.||+|++||+.+++++..+..|...|++++|+
T Consensus       314 gs~D~~i~iwd~~--~~~~~~~~~~h~~~v~~--v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  389 (410)
T 1vyh_C          314 GSRDKTIKMWDVS--TGMCLMTLVGHDNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH  389 (410)
T ss_dssp             EETTSEEEEEETT--TTEEEEEEECCSSCEEE--EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred             EeCCCeEEEEECC--CCceEEEEECCCCcEEE--EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence            9999999999997  55588999999999877  8999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEeeCCCe
Q 037288          473 TQRSMGPQIEGKI  485 (513)
Q Consensus       473 p~~~~~~t~~~~~  485 (513)
                      |++.++++++.|-
T Consensus       390 ~~~~~l~sgs~D~  402 (410)
T 1vyh_C          390 KTAPYVVTGSVDQ  402 (410)
T ss_dssp             SSSSCEEEEETTS
T ss_pred             CCCCEEEEEeCCC
Confidence            9988888877663

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.6e-31  Score=260.22  Aligned_cols=226  Identities=15%  Similarity=0.122  Sum_probs=181.8

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEE-----eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWV-----CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~-----~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...|...|.+++|+|++.+++.+.|+.|+|||+.+++....     ..|...|++++|+|+|++|++|+.|++|++||++
T Consensus        78 ~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            44567889999999997666555667799999998864322     2488899999999999999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEe
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      +++.   +..+.+|...|.+++|++    .+++++       ||.+.++......... ...+.++.+.+.++++|++|+
T Consensus       158 ~~~~---~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          158 QQVV---LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             TTEE---EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             CCcE---EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            8876   558999999999999988    466776       9988776443222222 334566544334678899999


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                      .||.|++||++  ...++.++.+|...|..  ++|+|++ ++|++|+.|++|+|||+.+++++. +..|...|++++|+|
T Consensus       235 ~dg~v~~wd~~--~~~~~~~~~~h~~~v~~--v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          235 ENGTVSLVDTK--STSCVLSSAVHSQCVTG--LVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRDFVRDATWSP  309 (344)
T ss_dssp             TTSEEEEEESC--C--CCEEEECCSSCEEE--EEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSSCEEEEEECS
T ss_pred             cCCcEEEEECC--CCcEEEEEcCCCCCEEE--EEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCCCEEEEEEeC
Confidence            99999999998  56689999999999877  8999998 589999999999999999998764 678899999999999


Q ss_pred             CC-ceEEeeCCCe
Q 037288          474 QR-SMGPQIEGKI  485 (513)
Q Consensus       474 ~~-~~~~t~~~~~  485 (513)
                      ++ .+++|++.|-
T Consensus       310 ~~~~llas~s~D~  322 (344)
T 4gqb_B          310 LNHSLLTTVGWDH  322 (344)
T ss_dssp             SSTTEEEEEETTS
T ss_pred             CCCeEEEEEcCCC
Confidence            85 5777776653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.3e-31  Score=259.27  Aligned_cols=247  Identities=13%  Similarity=0.115  Sum_probs=191.8

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEE-----EeeeCC
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASW-----VCRSKS  297 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~-----~~~~~~  297 (513)
                      +|.+.+|+..+.....        .......+|...|.+++|+|++.+++++.+++|+|||+.+++...     ...|..
T Consensus        69 d~~v~~~~~~~~~~~~--------~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~  140 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNE--------SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD  140 (357)
T ss_dssp             CEEEEEESSCC---CG--------GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred             cCeEEEEECCCCCcce--------eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence            6677777665432211        112335678899999999999998888888889999999886432     234788


Q ss_pred             CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCccc
Q 037288          298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIW  366 (513)
Q Consensus       298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~  366 (513)
                      .|++++|+|++++|++|+.|+.|++||+++++.   +..+.+|...|.+++|++    .+++++       |+...++..
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~---~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~  217 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV---LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA  217 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE---EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence            899999999999999999999999999998876   448899999999999987    466666       888877655


Q ss_pred             ceeEeec-CCCceEEEEEcCC-CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCC
Q 037288          367 PSHTTFM-PSSISCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDC  443 (513)
Q Consensus       367 ~~~~~~~-~~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg  443 (513)
                      ....... ...+.++ .|+|+ +.+|++|+.|+.|++||++  ...++.++.+|...|..  ++|+|++ ++|++|+.||
T Consensus       218 ~~~~~~~~~~~v~~v-~~sp~~~~~la~g~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~--l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          218 TRIDFCASDTIPTSV-TWHPEKDDTFACGDETGNVSLVNIK--NPDSAQTSAVHSQNITG--LAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             CBCCCTTCCSCEEEE-EECTTSTTEEEEEESSSCEEEEESS--CGGGCEEECCCSSCEEE--EEECSSSSCCEEEEETTS
T ss_pred             eeeeeccccccccch-hhhhcccceEEEeecccceeEEECC--CCcEeEEEeccceeEEE--EEEcCCCCCEEEEEeCCC
Confidence            4333333 3455565 66665 6789999999999999998  55688999999999877  8999987 6899999999


Q ss_pred             cEEEEeCCCCeEEEEecCCCCCeEEEEEcC-CCceEEeeCCCee
Q 037288          444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRT-QRSMGPQIEGKIH  486 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~~t~~~~~~  486 (513)
                      +|+|||+.+++++..+ .|...|++++|+| ++.+|+|++.|-.
T Consensus       293 ~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          293 TVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             CEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            9999999999988775 6788999999999 5888888876644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.6e-30  Score=254.37  Aligned_cols=273  Identities=15%  Similarity=0.121  Sum_probs=205.9

Q ss_pred             eeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEE
Q 037288          114 VQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCI  193 (513)
Q Consensus       114 ~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si  193 (513)
                      .++|+|    ..|++|+.||.|++|+.......  ..+.              .+...+..+.|+|++..+.        
T Consensus        71 ~~s~d~----~~l~s~s~Dg~v~vWd~~~~~~~--~~~~--------------~~~~~v~~~~~sp~g~~la--------  122 (354)
T 2pbi_B           71 DWCKDK----RRIVSSSQDGKVIVWDSFTTNKE--HAVT--------------MPCTWVMACAYAPSGCAIA--------  122 (354)
T ss_dssp             EECTTS----SEEEEEETTSEEEEEETTTCCEE--EEEE--------------CSSSCCCEEEECTTSSEEE--------
T ss_pred             EECCCC----CEEEEEeCCCeEEEEECCCCCcc--eEEe--------------cCCCCEEEEEECCCCCEEE--------
Confidence            466666    46999999999999997332210  0111              1112255555655522221        


Q ss_pred             EecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEE
Q 037288          194 KLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVI  273 (513)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s  273 (513)
                                               .+..++.+.+|++......      ........+.+|...|.+++|+|++..|++
T Consensus       123 -------------------------sg~~d~~i~v~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t  171 (354)
T 2pbi_B          123 -------------------------CGGLDNKCSVYPLTFDKNE------NMAAKKKSVAMHTNYLSACSFTNSDMQILT  171 (354)
T ss_dssp             -------------------------EESTTSEEEEEECCCCTTC------CSGGGCEEEEECSSCEEEEEECSSSSEEEE
T ss_pred             -------------------------EeeCCCCEEEEEEeccccc------cccccceeeeccCCcEEEEEEeCCCCEEEE
Confidence                                     1234677777776532211      011123457789999999999999998888


Q ss_pred             Ee-CCeEEEEECCCCcEEEEee-eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEee
Q 037288          274 GT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR  349 (513)
Q Consensus       274 ~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  349 (513)
                      ++ |++|++||+++++.+..+. |...|.+++|+|  ++++|++|+.||+|++||+++++.   +..+.+|...|.++  
T Consensus       172 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---~~~~~~h~~~v~~v--  246 (354)
T 2pbi_B          172 ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---VQAFETHESDVNSV--  246 (354)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEE--
T ss_pred             EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCCeEEE--
Confidence            76 5569999999999877766 778899999987  468999999999999999998875   44778888888885  


Q ss_pred             CCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE
Q 037288          350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV  429 (513)
Q Consensus       350 ~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~  429 (513)
                                                      .++|++++|++|+.|+.|++||++  ....+..+..+........++|
T Consensus       247 --------------------------------~~~p~~~~l~s~s~D~~v~lwd~~--~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          247 --------------------------------RYYPSGDAFASGSDDATCRLYDLR--ADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             --------------------------------EECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCTTCCSCEEEEEE
T ss_pred             --------------------------------EEeCCCCEEEEEeCCCeEEEEECC--CCcEEEEEcCCCcccceeEEEE
Confidence                                            455689999999999999999997  4445656654432222334899


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          430 DQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       430 s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +|+|++|++|+.|+.|++||+.+++.+..+..|...|++++|+|++.++++++.|
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            9999999999999999999999999999999999999999999998888887766

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-29  Score=245.61  Aligned_cols=230  Identities=11%  Similarity=0.081  Sum_probs=191.8

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ..++.+|.+.|.+++|+|++.+|++|+ |+.|++||+.++..+..+. |...|.+++|+|++++|++|+.|++|++||+.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            456889999999999999999999886 5569999999998877776 77789999999999999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEec
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSM  395 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~  395 (513)
                      +++.   +..+.+|...|.+++|+|   .+++++       |+...+.........|...+.++ .|+| ++.+|++|+.
T Consensus        86 ~~~~---~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v-~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           86 TGEK---VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV-AFNPKDPSTFASGCL  161 (304)
T ss_dssp             TCCE---EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE-EECTTCTTEEEEEET
T ss_pred             CCcE---EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE-EECCCCCCEEEEEeC
Confidence            8876   458899999999999999   677877       88876543222222355667776 6676 6899999999


Q ss_pred             CCeEEEEecCCCCccceEEe-cCCCCceeEEEEEEc--CCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          396 DGTVKLYDHRLTTRGAVQSY-EGHVNSHTRIQLGVD--QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~s--~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      |+.|++||++  ...+...+ .+|...+..  +.|+  +++.+|++|+.|++|++||+++++++..+..|...|.+++|+
T Consensus       162 D~~v~iwd~~--~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~  237 (304)
T 2ynn_A          162 DRTVKVWSLG--QSTPNFTLTTGQERGVNY--VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH  237 (304)
T ss_dssp             TSEEEEEETT--CSSCSEEEECCCTTCEEE--EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEECC--CCCccceeccCCcCcEEE--EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC
Confidence            9999999997  44444444 456677777  5555  478899999999999999999999999999999999999999


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      |++.++++++.|-.
T Consensus       238 p~~~~l~s~s~Dg~  251 (304)
T 2ynn_A          238 PTLPIIISGSEDGT  251 (304)
T ss_dssp             SSSSEEEEEETTSC
T ss_pred             CCCCEEEEEcCCCe
Confidence            99888888876643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.98  E-value=8.1e-30  Score=257.08  Aligned_cols=227  Identities=14%  Similarity=0.101  Sum_probs=197.0

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...+.+|..+|++++|+|++.++++|+. +.|++||+.+++....+. |...|.+++|+|++++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            4558899999999999999999998865 569999999998776665 78889999999999999999999999999998


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEec
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      +.+.   +..+.+|...|.+++|+|   .+++++       |+...+...  ..+.. ...+.+ +.+++++.+|++|+.
T Consensus       181 ~~~~---~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~--~~~~~h~~~v~~-~~~~~~g~~l~s~s~  254 (410)
T 1vyh_C          181 GFEC---IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV--KTFTGHREWVRM-VRPNQDGTLIASCSN  254 (410)
T ss_dssp             SSCE---EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEE-EEECTTSSEEEEEET
T ss_pred             CCce---eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEeCCCccEEE-EEECCCCCEEEEEcC
Confidence            8765   558899999999999998   677777       998877643  34443 444555 578999999999999


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCeE
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS--------------------ERFVMSGGEDCKLRIWSIRSGEL  455 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~--------------------g~~l~sg~~Dg~v~vwd~~~~~~  455 (513)
                      |+.|++||++  ...+...+.+|...+.+  ++|+|+                    |.+|++|+.|++|++||+.++++
T Consensus       255 D~~v~vwd~~--~~~~~~~~~~h~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~  330 (410)
T 1vyh_C          255 DQTVRVWVVA--TKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  330 (410)
T ss_dssp             TSCEEEEETT--TCCEEEEECCCSSCEEE--EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             CCeEEEEECC--CCceeeEecCCCceEEE--EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence            9999999997  55588889999999877  888886                    67999999999999999999999


Q ss_pred             EEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          456 VFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       456 ~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +..+..|...|++++|+|++.++++++.|-
T Consensus       331 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          331 LMTLVGHDNWVRGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             EEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            999999999999999999988888877664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=4.1e-29  Score=242.07  Aligned_cols=244  Identities=15%  Similarity=0.223  Sum_probs=201.3

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~  298 (513)
                      ..+|.+.+|++.+..            ....+.+|...|.+++|+|++++|++|+. +.|++||+.+++.+..+. |...
T Consensus        42 ~~dg~i~iw~~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  109 (312)
T 4ery_A           42 SADKLIKIWGAYDGK------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY  109 (312)
T ss_dssp             ETTSCEEEEETTTCC------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             eCCCeEEEEeCCCcc------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            357788888775332            24568899999999999999999998865 459999999999877666 7788


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccce
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPS  368 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~  368 (513)
                      |.+++|+|++++|++|+.|+.|++||+++++.   +..+..|..+|.+++|++   .+++++       |+...++....
T Consensus       110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  186 (312)
T 4ery_A          110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT  186 (312)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE---EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE
Confidence            99999999999999999999999999998875   458889999999999998   677776       88877654322


Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEc-CCCCEEEEEeCCCcEEE
Q 037288          369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVD-QSERFVMSGGEDCKLRI  447 (513)
Q Consensus       369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s-~~g~~l~sg~~Dg~v~v  447 (513)
                      ....+...+. .+.++|++++|++++.|+.|++||++  ...++..+.+|......+...++ +++.+|++|+.||.|++
T Consensus       187 ~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v  263 (312)
T 4ery_A          187 LIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYS--KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI  263 (312)
T ss_dssp             ECCSSCCCEE-EEEECTTSSEEEEEETTTEEEEEETT--TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred             EeccCCCceE-EEEECCCCCEEEEEcCCCeEEEEECC--CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence            2112233344 45899999999999999999999997  55588889988876555434454 57889999999999999


Q ss_pred             EeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          448 WSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       448 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      ||+.+++++..+..|...|.+++|+|++.++++++
T Consensus       264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence            99999999999999999999999999988888765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.1e-28  Score=242.27  Aligned_cols=232  Identities=16%  Similarity=0.160  Sum_probs=195.7

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ....+.+|...|++++|+|++++|++|+. +.|++||+.+++.+..+. |...|.+++|+|++++|++|+.|+.|++||+
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            45679999999999999999999998865 569999999998777666 6777999999999999999999999999999


Q ss_pred             CCCccc-cccccccccCcCeEEEeeCC--eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEe
Q 037288          326 RKRQRG-CSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       326 ~~~~~~-~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      ...... .....+.+|...|.++.|.+  .+++++       |+...+...  ..+. |...+.++ .++|++++|++|+
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~--~~~~~h~~~v~~~-~~~~~~~~l~sg~  203 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT--TTFTGHTGDVMSL-SLAPDTRLFVSGA  203 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCEEEE-EECTTSSEEEEEE
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE--EEEcCCCCceEEE-EECCCCCEEEEEe
Confidence            876422 11456789999999999987  777777       988776643  3333 45566665 7889999999999


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC--CCCeEEEEEc
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS--NSVPSAVCWR  472 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~--~~~v~~v~~~  472 (513)
                      .|+.|++||++  ...++.++.+|...|..  ++|+|++++|++|+.||+|++||+++++.+..+..+  ...|++++|+
T Consensus       204 ~d~~v~~wd~~--~~~~~~~~~~h~~~v~~--v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  279 (340)
T 1got_B          204 CDASAKLWDVR--EGMCRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             TTSCEEEEETT--TCSEEEEECCCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             CCCcEEEEECC--CCeeEEEEcCCcCCEEE--EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence            99999999998  55688899999999877  899999999999999999999999999988877543  3469999999


Q ss_pred             CCCceEEeeCCCee
Q 037288          473 TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 p~~~~~~t~~~~~~  486 (513)
                      |++.++++++.|-.
T Consensus       280 ~~g~~l~~g~~d~~  293 (340)
T 1got_B          280 KSGRLLLAGYDDFN  293 (340)
T ss_dssp             TTSSEEEEEETTSE
T ss_pred             CCCCEEEEECCCCe
Confidence            99888888776643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=5.2e-29  Score=245.18  Aligned_cols=232  Identities=11%  Similarity=0.079  Sum_probs=182.6

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCc--EEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGM--ASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~--~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ..+|...|.+++|+|++++|++|+. +.+++||+.++.  ++..+ .|...|.+++|+|++++|++|+.|++|++||++.
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            3578899999999999999999875 569999998774  34444 3888899999999999999999999999999987


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      ......+..+.+|...|.+++|+|   .+++++       |+...+.......+. |...|.++ .|+|++++|++++.|
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l-~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL-AFDPSGQRLASCSDD  215 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE-EECTTSSEEEEEETT
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE-EECCCCCEEEEEeCC
Confidence            654322557889999999999999   677776       887766544444443 45566665 889999999999999


Q ss_pred             CeEEEEecCCCCc-------------cceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------
Q 037288          397 GTVKLYDHRLTTR-------------GAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE--------  454 (513)
Q Consensus       397 g~i~lwd~~~~~~-------------~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--------  454 (513)
                      +.|++||.+....             .++.++.+ |...+..  ++|+|++..|++++.|+.|++|+...+.        
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  293 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD--IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS  293 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEE--EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEE--EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence            9999999742111             13445555 7777766  8999999999999999999999987642        


Q ss_pred             -EEEEecCCCCCeEEEEEcCCC-ceEEeeCCCee
Q 037288          455 -LVFEDKFSNSVPSAVCWRTQR-SMGPQIEGKIH  486 (513)
Q Consensus       455 -~~~~~~~~~~~v~~v~~~p~~-~~~~t~~~~~~  486 (513)
                       .......|...|++++|+|++ .++|+++.|-.
T Consensus       294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             EEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence             122345788999999999995 58888876643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=4.5e-29  Score=243.04  Aligned_cols=227  Identities=11%  Similarity=0.137  Sum_probs=189.4

Q ss_pred             EEeccccCcEEEEEEcCC----CCEEEEEe-CCeEEEEECCCCcEE--EEe-eeCCCeEEEEEecCCcEEEEEeCCCeEE
Q 037288          250 HLVASFKCTVWTADFCTN----PSQAVIGT-NLGAAMVDMETGMAS--WVC-RSKSDILAQQVIHSGNVVLCGFRNGAIV  321 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~----g~~l~s~s-~~~i~vwd~~~~~~~--~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~  321 (513)
                      ..+.+|.+.|++++|+|+    +.+|++|+ |++|+|||+.+++..  ..+ .|...|.+++|++++.++++|+.|++|+
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR  105 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            446799999999999984    56888886 556999999877643  223 4888899999999999999999999999


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeec-CCCceEEEEEcCCCCEE
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFM-PSSISCLQSLQLYDQYF  390 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l  390 (513)
                      +||+.+++.   +..+..|...+.+++|+|   .+++++       |+...+..  ...+.. ...+.+ +.++|++++|
T Consensus       106 lWd~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~--~~~~~~~~~~v~~-~~~spdg~~l  179 (321)
T 3ow8_A          106 LWDLENGKQ---IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--EYSLDTRGKFILS-IAYSPDGKYL  179 (321)
T ss_dssp             EEETTTTEE---EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE--EEEEECSSSCEEE-EEECTTSSEE
T ss_pred             EEECCCCCE---EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce--eEEecCCCceEEE-EEECCCCCEE
Confidence            999998876   447888999999999999   666665       87776653  233333 344555 5889999999


Q ss_pred             EEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEE
Q 037288          391 LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVC  470 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~  470 (513)
                      ++|+.||.|++||++  ....+.++.+|...+..  ++|+|++++|++|+.|+.|++||+++++++..+..|...|.+++
T Consensus       180 asg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~--l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          180 ASGAIDGIINIFDIA--TGKLLHTLEGHAMPIRS--LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             EEEETTSCEEEEETT--TTEEEEEECCCSSCCCE--EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEcCCCeEEEEECC--CCcEEEEEcccCCceeE--EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence            999999999999997  55588899999999887  89999999999999999999999999999999999999999999


Q ss_pred             EcCCCceEEeeCCCee
Q 037288          471 WRTQRSMGPQIEGKIH  486 (513)
Q Consensus       471 ~~p~~~~~~t~~~~~~  486 (513)
                      |+|++.++++++.|-.
T Consensus       256 ~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          256 FCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             ECTTSSEEEEEETTSC
T ss_pred             ECCCCCEEEEEeCCCc
Confidence            9999888888776643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=1.9e-29  Score=251.71  Aligned_cols=276  Identities=17%  Similarity=0.206  Sum_probs=208.0

Q ss_pred             eeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceE
Q 037288          113 NVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSC  192 (513)
Q Consensus       113 ~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~s  192 (513)
                      ..++|+|    +.|++|+.||.|++|++.+...  ...+.              .+...+..+.|+|++..+..      
T Consensus        72 ~~~sp~~----~~l~s~s~D~~v~iWd~~~~~~--~~~~~--------------~h~~~v~~~~~s~~g~~las------  125 (380)
T 3iz6_a           72 LDWTPEK----NWIVSASQDGRLIVWNALTSQK--THAIK--------------LHCPWVMECAFAPNGQSVAC------  125 (380)
T ss_dssp             EEECTTS----SCEEEEETTSEEEEEETTTTEE--EEEEE--------------CCCTTCCCCEECTTSSEEEE------
T ss_pred             EEEcCCC----CEEEEEeCCCeEEEEECCCCcc--ceEEe--------------cCCCCEEEEEECCCCCEEEE------
Confidence            3467766    4699999999999999744321  11111              12233677777776332221      


Q ss_pred             EEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCC-CEE
Q 037288          193 IKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNP-SQA  271 (513)
Q Consensus       193 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l  271 (513)
                                                 +..++.+.+|++.........     .+....+.+|...|.++.|+|++ ..|
T Consensus       126 ---------------------------~~~d~~v~iw~~~~~~~~~~~-----~~~~~~~~gh~~~v~~~~~~~~~~~~l  173 (380)
T 3iz6_a          126 ---------------------------GGLDSACSIFNLSSQADRDGN-----MPVSRVLTGHKGYASSCQYVPDQETRL  173 (380)
T ss_dssp             ---------------------------CCSSSCCEEEECCCCSSCCCS-----STTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred             ---------------------------eeCCCcEEEEECCCCccccCC-----ccceeeccCCCcceEEEEEecCCCCEE
Confidence                                       235677888887643221111     11234478999999999999964 467


Q ss_pred             EEEe-CCeEEEEECCCCcEEEEe------eeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCccccccccccccCcC
Q 037288          272 VIGT-NLGAAMVDMETGMASWVC------RSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP  343 (513)
Q Consensus       272 ~s~s-~~~i~vwd~~~~~~~~~~------~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  343 (513)
                      ++|+ |++|++||+.+++.+..+      .|...|.+++|++ ++++|++|+.|++|++||++.... . +..+.+|...
T Consensus       174 ~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~-~~~~~~h~~~  251 (380)
T 3iz6_a          174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-A-VRTYHGHEGD  251 (380)
T ss_dssp             EEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-C-CEEECCCSSC
T ss_pred             EEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-c-eEEECCcCCC
Confidence            7775 556999999999987766      3677899999987 789999999999999999985432 1 4577888888


Q ss_pred             eEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC---
Q 037288          344 YSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN---  420 (513)
Q Consensus       344 v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~---  420 (513)
                      |.++                                  .|+|++++|++|+.||+|++||++  ....+..+..+..   
T Consensus       252 v~~v----------------------------------~~~p~~~~l~s~s~D~~i~lwd~~--~~~~~~~~~~~~~~~~  295 (380)
T 3iz6_a          252 INSV----------------------------------KFFPDGQRFGTGSDDGTCRLFDMR--TGHQLQVYNREPDRND  295 (380)
T ss_dssp             CCEE----------------------------------EECTTSSEEEEECSSSCEEEEETT--TTEEEEEECCCCSSSC
T ss_pred             eEEE----------------------------------EEecCCCeEEEEcCCCeEEEEECC--CCcEEEEecccccccc
Confidence            8885                                  456699999999999999999997  5556777765432   


Q ss_pred             ----ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          421 ----SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED----KFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       421 ----~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~----~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                          .+..  ++|+|+|++|++|+.||.|++||+.+++.+..+    ..|...|++++|+|++.++++++.|-.
T Consensus       296 ~~~~~v~~--~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          296 NELPIVTS--VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             CSSCSCSE--EEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             cccCceEE--EEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence                2555  899999999999999999999999999988887    678899999999999999999887744

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=9.5e-29  Score=260.16  Aligned_cols=236  Identities=13%  Similarity=0.169  Sum_probs=194.2

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEeeeCCCeE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCRSKSDIL  300 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~~~~~V~  300 (513)
                      .+|.+.+|++..             ..+..+.+|...|.+++|+|+++++++++++ .|++||...........|...|.
T Consensus       323 ~d~~i~~w~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~  389 (577)
T 2ymu_A          323 DDKTVKLWNRNG-------------QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR  389 (577)
T ss_dssp             TTSCEEEEETTS-------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE
T ss_pred             CCCeEEEEeCCC-------------CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE
Confidence            467777777542             1345678999999999999999999998755 59999975433334444888899


Q ss_pred             EEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeE
Q 037288          301 AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHT  370 (513)
Q Consensus       301 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~  370 (513)
                      +++|+|++++|++|+.|+.|++||... +.   +..+.+|...|.+++|+|   .+++++       |+... +.  ...
T Consensus       390 ~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~--~~~  462 (577)
T 2ymu_A          390 GVAFSPDGQTIASASDDKTVKLWNRNG-QL---LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QL--LQT  462 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECTTC-CE---EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CE--EEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCC-CE---EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CE--EEE
Confidence            999999999999999999999999643 32   557889999999999998   666666       77532 21  222


Q ss_pred             e-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          371 T-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       371 ~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      + .+...+.++ .|+|++++|++++.|+.|++||.   ...++.++.+|...|+.  ++|+|+|++|++++.||.|++||
T Consensus       463 ~~~~~~~v~~~-~~spd~~~las~~~d~~i~iw~~---~~~~~~~~~~h~~~v~~--l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          463 LTGHSSSVRGV-AFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRG--VAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             EECCSSCEEEE-EECTTSCEEEEEETTSEEEEEET---TSCEEEEEECCSSCEEE--EEECTTSSCEEEEETTSEEEEEC
T ss_pred             EcCCCCCEEEE-EEcCCCCEEEEEeCCCEEEEEcC---CCCEEEEEeCCCCCEEE--EEEcCCCCEEEEEECcCEEEEEe
Confidence            3 345566664 88999999999999999999996   46688999999999877  89999999999999999999999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          450 IRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       450 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      . +++++..+..|.+.|++++|+|++.+|+|++.|
T Consensus       537 ~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          537 R-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             T-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             C-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            5 788999999999999999999998888887766

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=3.7e-29  Score=265.40  Aligned_cols=250  Identities=11%  Similarity=0.081  Sum_probs=185.6

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEe------
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVC------  293 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~------  293 (513)
                      ..+|.+.+|++.+......   +...  .....+|...|++++|+|++++|++++. ++|++||+.+++++..+      
T Consensus       209 s~D~~i~lwd~~~g~~~~~---~~~~--~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGV---FEDD--SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEE---CBCT--TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             ECCCcEEEEECCCCcEeee---eccc--cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            3578888888764332100   0000  0002279999999999999999998865 56999999987654322      


Q ss_pred             --------------------------------------eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          294 --------------------------------------RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       294 --------------------------------------~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                                                            .|...|.+++|+|+|++|++|+.|++|++||+.++....   
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~---  360 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR---  360 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee---
Confidence                                                  367789999999999999999999999999998654311   


Q ss_pred             cc-cc---------------------------------------------------------------------------
Q 037288          336 AG-RR---------------------------------------------------------------------------  339 (513)
Q Consensus       336 ~~-~~---------------------------------------------------------------------------  339 (513)
                      .+ .+                                                                           
T Consensus       361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~  440 (611)
T 1nr0_A          361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG  440 (611)
T ss_dssp             CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred             ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence            00 11                                                                           


Q ss_pred             ------cCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288          340 ------HRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD  403 (513)
Q Consensus       340 ------h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd  403 (513)
                            |...+.+++|+|   .+++++       |+...+.........|...|.++ .|+|++++|++++.|+.|++||
T Consensus       441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v-~fspdg~~las~s~d~~v~~w~  519 (611)
T 1nr0_A          441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV-AFSNNGAFLVATDQSRKVIPYS  519 (611)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEE-EECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEE-EECCCCCEEEEEcCCCCEEEEE
Confidence                  234567788887   566666       88766544333445567777775 8899999999999999999999


Q ss_pred             cCCCC-ccceEE--ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EE-EEecCC-CCCeEEEEEcCCCce
Q 037288          404 HRLTT-RGAVQS--YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LV-FEDKFS-NSVPSAVCWRTQRSM  477 (513)
Q Consensus       404 ~~~~~-~~~~~~--~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~-~~~~~~-~~~v~~v~~~p~~~~  477 (513)
                      +.  . ...+..  +.+|...|.+  ++|+|+|++|++|+.|++|++||+.+++ .+ ..+..| ...|++++|+|++. 
T Consensus       520 ~~--~~~~~~~~~~~~~H~~~V~~--v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-  594 (611)
T 1nr0_A          520 VA--NNFELAHTNSWTFHTAKVAC--VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-  594 (611)
T ss_dssp             GG--GTTEESCCCCCCCCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-
T ss_pred             cC--CCCceeeeeeeeecccceeE--EEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-
Confidence            96  3 223332  3459998877  9999999999999999999999998865 33 567778 78999999999987 


Q ss_pred             EEeeCCC
Q 037288          478 GPQIEGK  484 (513)
Q Consensus       478 ~~t~~~~  484 (513)
                      +++++.|
T Consensus       595 l~s~~~D  601 (611)
T 1nr0_A          595 IVSAGQD  601 (611)
T ss_dssp             EEEEETT
T ss_pred             EEEecCC
Confidence            6666655

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=9.5e-28  Score=252.51  Aligned_cols=237  Identities=13%  Similarity=0.176  Sum_probs=196.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDIL  300 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~  300 (513)
                      .++.+.+|+...             ..+..+.+|...|++++|+|++.+++++++ +.|++||+..........|...|.
T Consensus       282 ~d~~i~~w~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~  348 (577)
T 2ymu_A          282 DDKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW  348 (577)
T ss_dssp             TTSCEEEEETTS-------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred             CCCEEEEEeCCC-------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence            456677776431             134568899999999999999999998865 459999998776666666888999


Q ss_pred             EEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeE
Q 037288          301 AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHT  370 (513)
Q Consensus       301 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~  370 (513)
                      +++|+|++++|++|+.|+.|++||... +.   +..+.+|..+|.+++|+|   .+++++       |+.. ++.  ...
T Consensus       349 ~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~---~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~--~~~  421 (577)
T 2ymu_A          349 GVAFSPDGQTIASASDDKTVKLWNRNG-QL---LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL--LQT  421 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTC-CE---EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCE--EEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEcCCC-CE---EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCE--EEE
Confidence            999999999999999999999999643 33   557889999999999998   677766       7643 221  223


Q ss_pred             e-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          371 T-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       371 ~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      + .+...+.++ .|+|++++|++++.|+.|++||.   ....+..+.+|...+..  ++|+|++++|++++.|+.|++||
T Consensus       422 ~~~~~~~v~~~-~~s~d~~~l~~~~~d~~v~~w~~---~~~~~~~~~~~~~~v~~--~~~spd~~~las~~~d~~i~iw~  495 (577)
T 2ymu_A          422 LTGHSSSVWGV-AFSPDDQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRG--VAFSPDGQTIASASDDKTVKLWN  495 (577)
T ss_dssp             EECCSSCEEEE-EECTTSSEEEEEETTSEEEEEET---TSCEEEEEECCSSCEEE--EEECTTSCEEEEEETTSEEEEEE
T ss_pred             ecCCCCCeEEE-EECCCCCEEEEEcCCCEEEEEEC---CCCEEEEEcCCCCCEEE--EEEcCCCCEEEEEeCCCEEEEEc
Confidence            3 345566665 78999999999999999999997   45678889999999877  89999999999999999999999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          450 IRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       450 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      . +++++..+..|...|++++|+|++.++++++.|-
T Consensus       496 ~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg  530 (577)
T 2ymu_A          496 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  530 (577)
T ss_dssp             T-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             C-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC
Confidence            5 7888999999999999999999988888877664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1.1e-28  Score=247.44  Aligned_cols=218  Identities=16%  Similarity=0.227  Sum_probs=177.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCe
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      ..+|.+.+|++.+.            ..+..+.+|...|.+++|+|++.+|++|+. +.|++||+.++++...+.+...+
T Consensus       142 ~~d~~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v  209 (393)
T 1erj_A          142 AEDRLIRIWDIENR------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV  209 (393)
T ss_dssp             ETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred             cCCCeEEEEECCCC------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCc
Confidence            35788888887643            234668899999999999999999998865 55999999999988888888899


Q ss_pred             EEEEEec-CCcEEEEEeCCCeEEEEECCCCcccccc----ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          300 LAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSS----RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       300 ~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~----~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                      .+++|+| ++++|++|+.|+.|++||++++.....+    ....+|...|.++                           
T Consensus       210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v---------------------------  262 (393)
T 1erj_A          210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV---------------------------  262 (393)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE---------------------------
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE---------------------------
Confidence            9999999 8999999999999999999887643211    1124566666664                           


Q ss_pred             CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC----------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT----------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~----------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                             .|+|++++|++|+.|+.|++||++...          ..+...+.+|...|..  ++|+|++.+|++|+.|+.
T Consensus       263 -------~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~l~sgs~D~~  333 (393)
T 1erj_A          263 -------VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS--VATTQNDEYILSGSKDRG  333 (393)
T ss_dssp             -------EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE--EEECGGGCEEEEEETTSE
T ss_pred             -------EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE--EEECCCCCEEEEEeCCCe
Confidence                   556799999999999999999997321          1245678899998876  899999999999999999


Q ss_pred             EEEEeCCCCeEEEEecCCCCCeEEEEEcC------CCceEEeeCCCee
Q 037288          445 LRIWSIRSGELVFEDKFSNSVPSAVCWRT------QRSMGPQIEGKIH  486 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p------~~~~~~t~~~~~~  486 (513)
                      |++||+.+++++..+..|...|.+++|++      ++.+++|++.|-.
T Consensus       334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            99999999999999999999999999987      4667887776643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.7e-28  Score=241.15  Aligned_cols=218  Identities=11%  Similarity=0.049  Sum_probs=169.1

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~  298 (513)
                      ..+|.+.+|++.+......        ....+.+|.+.|++++|+|+|++|++|+.+ +|++||+.+++++..+. |...
T Consensus       100 s~dg~v~lWd~~~~~~~~~--------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIV--------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEE--------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ECCCEEEEEeccCCCceeE--------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            3578899999876543311        123466899999999999999999998755 59999999999887776 8888


Q ss_pred             eEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCccc
Q 037288          299 ILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIW  366 (513)
Q Consensus       299 V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~  366 (513)
                      |.+++|++++ .+|++|+.|++|++||+++++... ......|...+.+++|+|    .+++++       ||...++..
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~  250 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV  250 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceee-eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence            9999999988 589999999999999999887644 223355677899999998    456665       998877643


Q ss_pred             ceeEee-cCCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEEeCCC
Q 037288          367 PSHTTF-MPSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSGGEDC  443 (513)
Q Consensus       367 ~~~~~~-~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~~Dg  443 (513)
                        ..+. |...|.++ .|+|++ ++|++|+.|++|+|||++   .+.+..+.+|.+.|..  ++|+|+++ +|++||.||
T Consensus       251 --~~~~~h~~~v~~v-~fsp~g~~~lasgs~D~~i~vwd~~---~~~~~~~~~H~~~V~~--v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          251 --LSSAVHSQCVTGL-VFSPHSVPFLASLSEDCSLAVLDSS---LSELFRSQAHRDFVRD--ATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             --EEEECCSSCEEEE-EECSSSSCCEEEEETTSCEEEECTT---CCEEEEECCCSSCEEE--EEECSSSTTEEEEEETTS
T ss_pred             --EEEcCCCCCEEEE-EEccCCCeEEEEEeCCCeEEEEECC---CCcEEEEcCCCCCEEE--EEEeCCCCeEEEEEcCCC
Confidence              3443 45667765 788887 579999999999999996   3445678899999877  89999986 677999999


Q ss_pred             cEEEEeCCCCeE
Q 037288          444 KLRIWSIRSGEL  455 (513)
Q Consensus       444 ~v~vwd~~~~~~  455 (513)
                      +|++|++.+..+
T Consensus       323 ~v~~w~v~~~~~  334 (344)
T 4gqb_B          323 QVVHHVVPTEPL  334 (344)
T ss_dssp             CEEEEECCC---
T ss_pred             eEEEEECCCCCC
Confidence            999999987543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=241.41  Aligned_cols=221  Identities=9%  Similarity=0.021  Sum_probs=160.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCC----cEEEEee-e
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETG----MASWVCR-S  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~----~~~~~~~-~  295 (513)
                      .+|.+.+|++......     ......+..+.+|...|.+++|+|++++|++|+. ++|++||+...    +++..+. |
T Consensus        78 ~D~~v~iw~~~~~~~~-----~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h  152 (330)
T 2hes_X           78 FDSTVSIWAKEESADR-----TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH  152 (330)
T ss_dssp             TTSCEEEEEC------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred             CCCcEEEEEcccCcCc-----cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence            5788888887532110     0011235668899999999999999999999875 56999999432    3444444 7


Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS  375 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~  375 (513)
                      ...|.+++|+|++.+|++|+.|++|++||++...... +..+.+|...|.+++|+                         
T Consensus       153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~-~~~~~~h~~~v~~~~~~-------------------------  206 (330)
T 2hes_X          153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC-VAVLNGHEGTVWSSDFD-------------------------  206 (330)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEEC-------------------------
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE-EEEccCCCCcEEEEEec-------------------------
Confidence            8889999999999999999999999999998764333 56788999988886653                         


Q ss_pred             CceEEEEEcCC--CCEEEEEecCCeEEEEecCCCCc------cceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          376 SISCLQSLQLY--DQYFLASSMDGTVKLYDHRLTTR------GAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       376 ~v~~~~~~~~~--~~~l~s~s~dg~i~lwd~~~~~~------~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                               |+  +.+|++|+.|++|++||++....      .+...+.+ |...|..  ++|++++ +|++|+.||.|+
T Consensus       207 ---------~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--v~~s~~~-~l~s~~~dg~v~  274 (330)
T 2hes_X          207 ---------KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN--VAWGFNG-LIASVGADGVLA  274 (330)
T ss_dssp             ---------CSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEE--EEECTTS-CEEEEETTSCEE
T ss_pred             ---------CCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEE--EEEcCCC-EEEEEeCCCEEE
Confidence                     45  67899999999999999862111      23445555 8888877  8888665 799999999999


Q ss_pred             EEeCCCCe--EEEE-ecCCCC-CeEEEEEcC--CCceEEeeCCCe
Q 037288          447 IWSIRSGE--LVFE-DKFSNS-VPSAVCWRT--QRSMGPQIEGKI  485 (513)
Q Consensus       447 vwd~~~~~--~~~~-~~~~~~-~v~~v~~~p--~~~~~~t~~~~~  485 (513)
                      +||+.+++  .+.. ...|.. .|++++|+|  ++.++++++.|-
T Consensus       275 iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          275 VYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            99998874  3333 355665 899999999  577788777663

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=2.1e-28  Score=241.97  Aligned_cols=217  Identities=13%  Similarity=0.049  Sum_probs=165.3

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .+|.+.+|++.+......        ......+|...|++++|+|++++|++|+. +.|++||+.+++++..+. |...|
T Consensus       113 ~dg~v~lWd~~~~~~~~~--------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          113 DSGAVELWEILEKESLLV--------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             TTSCEEEC--------CC--------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEeeccccceeEE--------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            467888888775443211        12346689999999999999999998865 459999999999887776 78889


Q ss_pred             EEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccc
Q 037288          300 LAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWP  367 (513)
Q Consensus       300 ~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~  367 (513)
                      .+++|++++ .++++++.||.|++||+++++... ...+..|...+.+++|+|    .+++++       |+...++.. 
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-  262 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-  262 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceee-eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe-
Confidence            999999988 589999999999999999887654 445567888999999998    455665       888776643 


Q ss_pred             eeEee-cCCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCc
Q 037288          368 SHTTF-MPSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCK  444 (513)
Q Consensus       368 ~~~~~-~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~  444 (513)
                       ..+. +...|.++ .|+|++ ++|++|+.|++|+|||++  ....+. ..+|.+.|+.  ++|+| ++++|++|+.||+
T Consensus       263 -~~~~~~~~~v~~l-~~sp~~~~~lasgs~D~~i~iwd~~--~~~~~~-~~~H~~~V~~--vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          263 -QTSAVHSQNITGL-AYSYHSSPFLASISEDCTVAVLDAD--FSEVFR-DLSHRDFVTG--VAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             -EEECCCSSCEEEE-EECSSSSCCEEEEETTSCEEEECTT--SCEEEE-ECCCSSCEEE--EEECSSSTTEEEEEETTSC
T ss_pred             -EEEeccceeEEEE-EEcCCCCCEEEEEeCCCEEEEEECC--CCcEeE-ECCCCCCEEE--EEEeCCCCCEEEEEcCCCe
Confidence             3343 45566665 777776 679999999999999996  333444 4579999877  89998 7999999999999


Q ss_pred             EEEEeCCCCeE
Q 037288          445 LRIWSIRSGEL  455 (513)
Q Consensus       445 v~vwd~~~~~~  455 (513)
                      |++|++.+...
T Consensus       336 v~iW~~~~~~~  346 (357)
T 4g56_B          336 VLHHHLPSEGR  346 (357)
T ss_dssp             EEEEECC----
T ss_pred             EEEEECCCCCc
Confidence            99999976443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=8.2e-29  Score=247.11  Aligned_cols=234  Identities=16%  Similarity=0.157  Sum_probs=194.2

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      +...+.+|...|++++|+|++.+|++|+. ++|++||+.+++....+. |...|.+++|+|+|++|++|+.|+.|++||+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            56779999999999999999999998875 559999999998777666 7778999999999999999999999999999


Q ss_pred             CCCcc----ccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeE----eecCCCceEEEEEcCC
Q 037288          326 RKRQR----GCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHT----TFMPSSISCLQSLQLY  386 (513)
Q Consensus       326 ~~~~~----~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~----~~~~~~v~~~~~~~~~  386 (513)
                      .....    ......+.+|...|.++.|.|    .+++++       |+...++......    ..|...+.++.+.+++
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence            75321    111456889999999999988    588877       9988776432211    2345677777665668


Q ss_pred             CCEEEEEecCCeEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC--
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN--  463 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~--  463 (513)
                      +++|++|+.|+.|++||++  .. .++..+.+|...|..  ++|+|++++|++|+.||+|++||+++++++..+..+.  
T Consensus       218 ~~~l~sgs~D~~v~~wd~~--~~~~~~~~~~~h~~~v~~--v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~  293 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLR--ITSRAVRTYHGHEGDINS--VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR  293 (380)
T ss_dssp             CCEEEEEETTSCEEEEETT--TTCCCCEEECCCSSCCCE--EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred             CCEEEEEECCCeEEEEECC--CCCcceEEECCcCCCeEE--EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence            9999999999999999997  33 378899999999988  8999999999999999999999999999998875542  


Q ss_pred             -----CCeEEEEEcCCCceEEeeCCCe
Q 037288          464 -----SVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       464 -----~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                           ..|++++|+|++.+++++..+-
T Consensus       294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg  320 (380)
T 3iz6_a          294 NDNELPIVTSVAFSISGRLLFAGYSNG  320 (380)
T ss_dssp             SCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred             cccccCceEEEEECCCCCEEEEEECCC
Confidence                 2489999999988887776553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=3.2e-28  Score=234.33  Aligned_cols=233  Identities=10%  Similarity=0.044  Sum_probs=182.5

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCC--cEEEEe-eeCCCeEEEEEec--CCcEEEEEeCCCeEEEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETG--MASWVC-RSKSDILAQQVIH--SGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~--~~~~~~-~~~~~V~~l~~~~--~~~~l~sg~~dg~i~iw  323 (513)
                      ..+.+|...|++++|+|+|++|++|+. ++|+|||+.++  +.+..+ .|...|.+++|++  ++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            457899999999999999999999875 55999999753  444444 4888999999986  48999999999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCccc-ceeEeecCCCceEEEEEcCC----
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIW-PSHTTFMPSSISCLQSLQLY----  386 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~-~~~~~~~~~~v~~~~~~~~~----  386 (513)
                      |+++++... +..+.+|...|.+++|+|     .+++++       |+...+... ......|...+.++ .|+|+    
T Consensus        83 d~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~-~~~p~~~~~  160 (297)
T 2pm7_B           83 KEENGRWSQ-IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA-SWAPATIEE  160 (297)
T ss_dssp             EBSSSCBCC-CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE-EECCCC---
T ss_pred             EcCCCceEE-EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE-eecCCcccc
Confidence            998775333 556788999999999987     467776       887765322 22223455566665 66765    


Q ss_pred             ---------CCEEEEEecCCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 037288          387 ---------DQYFLASSMDGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSE---RFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       387 ---------~~~l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g---~~l~sg~~Dg~v~vwd~~~  452 (513)
                               +++|++|+.|+.|++||++.....  ...++.+|...|..  ++|+|++   .+|++|+.|++|+|||+.+
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~--v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD--VAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE--EEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE--EEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                     579999999999999999732211  56688999999877  8999984   8999999999999999987


Q ss_pred             Ce---EEEEe--cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          453 GE---LVFED--KFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       453 ~~---~~~~~--~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +.   ....+  ..|...|.+++|+|++.++|+++.|-.
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            53   22233  456788999999999888888777643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=9.5e-28  Score=235.94  Aligned_cols=225  Identities=11%  Similarity=0.076  Sum_probs=173.6

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ..+.+|...|.+++|+|++.++++|+ |++|++||+.+++.+..+. |...|.+++|+|++++|++|+.|++|++||+..
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            34788999999999999999999886 5569999999998876665 888899999999999999999999999999985


Q ss_pred             CccccccccccccCcCeEEEeeCC-------------eEEEeE-------eecccCcccceeEe-ecCCCceEEEEEcCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND-------------RVTNEQ-------WFELKANIWPSHTT-FMPSSISCLQSLQLY  386 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~-------------~~~s~~-------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  386 (513)
                      ..... .....+|...|.+++|+|             .+++++       |+.. ..  ....+ .|...+.++ .|+|+
T Consensus       150 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~v~~~-~~s~~  224 (343)
T 2xzm_R          150 ECKFS-SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESNVNHL-SISPN  224 (343)
T ss_dssp             CEEEE-CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSCEEEE-EECTT
T ss_pred             Cceee-eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCccccceEE-EECCC
Confidence            43322 334558999999999987             266666       7732 21  12233 345566665 88999


Q ss_pred             CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--Eec----
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF--EDK----  460 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~--~~~----  460 (513)
                      +++|++|+.||.|++||++. .......+. +...+..  ++|+|++.+|++| .|+.|++||+.+++...  .+.    
T Consensus       225 g~~l~sgs~dg~v~iwd~~~-~~~~~~~~~-~~~~v~~--v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~  299 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILN-LTYPQREFD-AGSTINQ--IAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI  299 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSC-CSSCSEEEE-CSSCEEE--EEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG
T ss_pred             CCEEEEEcCCCeEEEEECCC-Ccccceeec-CCCcEEE--EEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc
Confidence            99999999999999999952 122444443 3444655  8999999887655 58889999998876543  433    


Q ss_pred             -------CCCCCeEEEEEcCCCceEEeeCCC
Q 037288          461 -------FSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       461 -------~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                             .|...|.+++|+|++.++++++.|
T Consensus       300 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D  330 (343)
T 2xzm_R          300 TKAEGQKGKNPQCTSLAWNALGKKLFAGFTD  330 (343)
T ss_dssp             GGBTTBCCSCCCEEEEEECSSSCCEEEEETT
T ss_pred             hhhhhhcCCCCceEEEEECCCCCeEEEecCC
Confidence                   567789999999998777776655

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=1.3e-27  Score=232.43  Aligned_cols=225  Identities=8%  Similarity=0.069  Sum_probs=183.8

Q ss_pred             eEEeccccCcEEEEEEcCCC-CEEEEEeC-CeEEEEECCCC-----cEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeE
Q 037288          249 MHLVASFKCTVWTADFCTNP-SQAVIGTN-LGAAMVDMETG-----MASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAI  320 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g-~~l~s~s~-~~i~vwd~~~~-----~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i  320 (513)
                      ..++.+|.+.|++++|+|++ ++|++|+. ++|++||+...     .++..+ .|...|.+++|+|++++|++|+.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            35689999999999999965 78888865 55999998642     233344 488889999999999999999999999


Q ss_pred             EEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcC-----
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQL-----  385 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  385 (513)
                      ++||+.+++.   +..+.+|...|.+++|++   .+++++       |+......  .....+...+.++ .+.|     
T Consensus        90 ~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~--~~~~~h~~~v~~~-~~~~~~~~~  163 (319)
T 3frx_A           90 RLWDVATGET---YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL--ATLLGHNDWVSQV-RVVPNEKAD  163 (319)
T ss_dssp             EEEETTTTEE---EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEE--EEECCCSSCEEEE-EECCC----
T ss_pred             EEEECCCCCe---eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEeccCCcEEEE-EEccCCCCC
Confidence            9999998876   458899999999999998   677777       88754321  1222345566665 5555     


Q ss_pred             -CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC
Q 037288          386 -YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       386 -~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~  464 (513)
                       ++..|++++.|+.|++||++  .......+.+|...+..  ++|+|+|++|++|+.||.|++||+.+++++..+..+ .
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~h~~~v~~--~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~  238 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLN--QFQIEADFIGHNSNINT--LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D  238 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETT--TTEEEEEECCCCSCEEE--EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-S
T ss_pred             CCccEEEEEeCCCEEEEEECC--cchhheeecCCCCcEEE--EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-C
Confidence             45589999999999999997  55577889999999877  899999999999999999999999999999998764 5


Q ss_pred             CeEEEEEcCCCceEEeeCCC
Q 037288          465 VPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       465 ~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .|.+++|+|++.+++++..+
T Consensus       239 ~v~~~~~sp~~~~la~~~~~  258 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATAT  258 (319)
T ss_dssp             CEEEEEECSSSSEEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEcCC
Confidence            79999999998777766554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=2.7e-28  Score=240.10  Aligned_cols=234  Identities=12%  Similarity=0.090  Sum_probs=186.5

Q ss_pred             eeEEeccccC-cEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEE--E--eeeCCCeEEEEEecCCcEEEEEeCCCeEE
Q 037288          248 TMHLVASFKC-TVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASW--V--CRSKSDILAQQVIHSGNVVLCGFRNGAIV  321 (513)
Q Consensus       248 ~~~~~~~h~~-~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~--~--~~~~~~V~~l~~~~~~~~l~sg~~dg~i~  321 (513)
                      .+..+.+|.. .|++++|+|+|++||+|+. +.|+|||+.++....  .  ..|...|.+++|+|++++|++|+.|++|+
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            3566889988 9999999999999998865 569999998876332  2  23788899999999999999999999999


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccc-ceeEe-ecCCCceEEEEEcCCCCE
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIW-PSHTT-FMPSSISCLQSLQLYDQY  389 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~  389 (513)
                      +||+....... +..+.+|..+|.+++|+|   .+++++       |+...+... ....+ .+...+.++ .|+|++++
T Consensus        87 iw~~~~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~~p~~~~  164 (345)
T 3fm0_A           87 IWKKNQDDFEC-VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV-VWHPSQEL  164 (345)
T ss_dssp             EEEECCC-EEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE-EECSSSSC
T ss_pred             EEEccCCCeEE-EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE-EECCCCCE
Confidence            99998775444 568899999999999998   677777       888765422 22233 344556664 78999999


Q ss_pred             EEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------e
Q 037288          390 FLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG---------------E  454 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~---------------~  454 (513)
                      |++++.|+.|++||++.....+..++.+|...|..  ++|+|+|++|++|+.|++|+||+....               +
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~--l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWS--LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE--EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEE--EEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            99999999999999872222256789999999877  899999999999999999999996321               3


Q ss_pred             EEEEecC-CCCCeEEEEEcCCCceEEeeCCCe
Q 037288          455 LVFEDKF-SNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       455 ~~~~~~~-~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ++..+.. |...|.+++|+|++..+++.+.|-
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~  274 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTGALATACGDD  274 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             eeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence            4445544 788899999999977777766653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.7e-28  Score=243.39  Aligned_cols=196  Identities=8%  Similarity=0.050  Sum_probs=160.2

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      ..+...+.+++|+|||+++++++   |++|+|||+.+++++..+.|...|.+++|+|||++|++++.| .+.+|+..++.
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence            34556799999999999987553   456999999999999989999999999999999999999855 56666666665


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC----eEEEEecC
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG----TVKLYDHR  405 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg----~i~lwd~~  405 (513)
                      ... .....+|...|.++                                  .|+|+++++++++.|+    .+++||+.
T Consensus       209 ~~~-~~~~~~~~~~v~~v----------------------------------~fspdg~~l~~~s~d~~~~~~i~~~~~~  253 (365)
T 4h5i_A          209 CIA-RKTDFDKNWSLSKI----------------------------------NFIADDTVLIAASLKKGKGIVLTKISIK  253 (365)
T ss_dssp             EEE-EECCCCTTEEEEEE----------------------------------EEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred             cee-eeecCCCCCCEEEE----------------------------------EEcCCCCEEEEEecCCcceeEEeecccc
Confidence            433 23455666666663                                  5667999999999887    68889986


Q ss_pred             CCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCceEEeeC
Q 037288          406 LTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       406 ~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      .....  ....+.+|...|++  ++|+|+|++|++|+.|++|+|||+.+++++..+ ..|..+|++|+|+|++.+|||++
T Consensus       254 ~~~~~~~~~~~~~~~~~~V~~--~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          254 SGNTSVLRSKQVTNRFKGITS--MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             TTEEEEEEEEEEESSCSCEEE--EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred             cceecceeeeeecCCCCCeEe--EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence            22222  34567889999877  899999999999999999999999999999885 78999999999999999999988


Q ss_pred             CCee
Q 037288          483 GKIH  486 (513)
Q Consensus       483 ~~~~  486 (513)
                      .|-.
T Consensus       332 ~D~t  335 (365)
T 4h5i_A          332 AANT  335 (365)
T ss_dssp             TTSE
T ss_pred             CCCe
Confidence            8855

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.5e-28  Score=234.20  Aligned_cols=210  Identities=9%  Similarity=0.093  Sum_probs=170.6

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEeeeCCCe
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      ..+|.+.+|++.+..            .+..+.+|...|.+++|+|++.++++|+.+ .|++||+..........|...|
T Consensus        84 s~D~~v~~wd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v  151 (319)
T 3frx_A           84 SWDKTLRLWDVATGE------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWV  151 (319)
T ss_dssp             ETTSEEEEEETTTTE------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCE
T ss_pred             eCCCEEEEEECCCCC------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcE
Confidence            357888888876432            356688999999999999999999988755 5999999866555556688889


Q ss_pred             EEEEEecC------CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288          300 LAQQVIHS------GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM  373 (513)
Q Consensus       300 ~~l~~~~~------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~  373 (513)
                      .+++|+|.      +..|++|+.|+.|++||++..+.   ...+.+|..+|.++                          
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~h~~~v~~~--------------------------  202 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---EADFIGHNSNINTL--------------------------  202 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTEE---EEEECCCCSCEEEE--------------------------
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---heeecCCCCcEEEE--------------------------
Confidence            99999984      45899999999999999988765   33677888888874                          


Q ss_pred             CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288          374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG  453 (513)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~  453 (513)
                              .++|++++|++|+.||.|++||++  ...++..+..+ ..+..  ++|+|++.+|++++.+ .+++|++..+
T Consensus       203 --------~~sp~g~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~-~~v~~--~~~sp~~~~la~~~~~-~i~v~~~~~~  268 (319)
T 3frx_A          203 --------TASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSAQ-DEVFS--LAFSPNRYWLAAATAT-GIKVFSLDPQ  268 (319)
T ss_dssp             --------EECTTSSEEEEEETTCEEEEEETT--TTEEEEEEECC-SCEEE--EEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred             --------EEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEecCC-CcEEE--EEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence                    456799999999999999999997  55577777754 45655  8999999999988755 5999999998


Q ss_pred             eEEEEecC--------CCCCeEEEEEcCCCceEEeeCCCe
Q 037288          454 ELVFEDKF--------SNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       454 ~~~~~~~~--------~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      ..+..+..        +...+.+++|+|++.++++++.|-
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            88777642        356789999999998888877663

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=3.9e-27  Score=232.65  Aligned_cols=231  Identities=15%  Similarity=0.156  Sum_probs=191.0

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ....+.+|...|++++|+|++.+|++|+.+ +|++||..+++....+. +...|.+++|+|+|..|++|+.|+.+++|++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            356789999999999999999999998755 59999999988766665 6677999999999999999999999999998


Q ss_pred             CCCccc---cccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcC--CCCE
Q 037288          326 RKRQRG---CSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQL--YDQY  389 (513)
Q Consensus       326 ~~~~~~---~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~  389 (513)
                      ......   .....+.+|...|.++.|++   .+++++       |++..++..  ..+. |...+.++ .+++  ++++
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~--~~~~~h~~~v~~~-~~~~~~~g~~  212 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL--QSFHGHGADVLCL-DLAPSETGNT  212 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEE-EECCCSSCCE
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEcCCCCCeEEE-EEEeCCCCCE
Confidence            754211   11346778999999999998   678877       998877643  3343 45566665 5544  5789


Q ss_pred             EEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC--CCCeE
Q 037288          390 FLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS--NSVPS  467 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~--~~~v~  467 (513)
                      |++|+.||.|++||++  ...++..+.+|...|..  ++|+|++.+|++|+.|++|++||+++++.+..+..+  ...+.
T Consensus       213 l~sgs~Dg~v~~wd~~--~~~~~~~~~~h~~~v~~--v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~  288 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMR--SGQCVQAFETHESDVNS--VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS  288 (354)
T ss_dssp             EEEEETTSCEEEEETT--TCCEEEEECCCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             EEEEeCCCeEEEEECC--CCcEEEEecCCCCCeEE--EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccccee
Confidence            9999999999999998  55688999999999877  899999999999999999999999999888776543  34689


Q ss_pred             EEEEcCCCceEEeeCCCe
Q 037288          468 AVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       468 ~v~~~p~~~~~~t~~~~~  485 (513)
                      +++|+|++.++++++.|-
T Consensus       289 ~~~~s~~g~~l~~g~~d~  306 (354)
T 2pbi_B          289 SVDFSLSGRLLFAGYNDY  306 (354)
T ss_dssp             EEEECTTSSEEEEEETTS
T ss_pred             EEEEeCCCCEEEEEECCC
Confidence            999999988888776653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1.3e-27  Score=239.60  Aligned_cols=225  Identities=15%  Similarity=0.144  Sum_probs=186.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC-------------------CCeEEEEEecCCcEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK-------------------SDILAQQVIHSGNVVL  312 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-------------------~~V~~l~~~~~~~~l~  312 (513)
                      ..+|...|.+++|+|+|++||+|+++++++|++.+++.+..+...                   ..|.+++|+|+|++|+
T Consensus        60 ~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           60 SLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             ecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            347999999999999999999999989999999999877665421                   1389999999999999


Q ss_pred             EEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEE
Q 037288          313 CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQS  382 (513)
Q Consensus       313 sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~  382 (513)
                      +|+.|+.|++||+.+++.   +..+.+|...|.+++|+|   .+++++       |+...++.  ...+.+...+.++ .
T Consensus       140 s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~v~~~-~  213 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKI---VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTV-A  213 (393)
T ss_dssp             EEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEE-E
T ss_pred             EEcCCCeEEEEECCCCcE---EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--EEEEEcCCCcEEE-E
Confidence            999999999999998875   447899999999999998   677776       99887664  3445566677776 5


Q ss_pred             EcC-CCCEEEEEecCCeEEEEecCCCCccceEEe-------cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-
Q 037288          383 LQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSY-------EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-  453 (513)
Q Consensus       383 ~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-------~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-  453 (513)
                      ++| ++++|++|+.|+.|++||++  ....+..+       .+|...|..  ++|+|+|++|++|+.|+.|++||+.+. 
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~--v~~~~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSE--TGFLVERLDSENESGTGHKDSVYS--VVFTRDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETT--TCCEEEEEC------CCCSSCEEE--EEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             EECCCCCEEEEEcCCCcEEEEECC--CCcEEEeecccccCCCCCCCCEEE--EEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            555 89999999999999999997  44455555       578888877  899999999999999999999999763 


Q ss_pred             -----------eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          454 -----------ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       454 -----------~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                                 .+...+..|...|.+++|+|++.++++++.|-.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~  333 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  333 (393)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence                       345667788999999999999888888776643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-28  Score=247.01  Aligned_cols=246  Identities=14%  Similarity=0.149  Sum_probs=191.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC-CCEEEEEe-CCeEEEEECCCCc------EEEE-
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN-PSQAVIGT-NLGAAMVDMETGM------ASWV-  292 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-g~~l~s~s-~~~i~vwd~~~~~------~~~~-  292 (513)
                      .+|.+.+|++......        ...+..+.+|...|.+++|+|+ +.+|++++ |+.|++||+.+++      .... 
T Consensus        87 ~dg~v~vw~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  158 (416)
T 2pm9_A           87 DNGSLELYSTNEANNA--------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP  158 (416)
T ss_dssp             SSSCEEEECCSSTTSC--------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred             cCCeEEEeeccccccc--------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence            4688888887742211        1245678899999999999998 88888886 4569999999876      3322 


Q ss_pred             ---eeeCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCcccccccccccc------CcCeEEEeeCC----eEEEeE-
Q 037288          293 ---CRSKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH------RIPYSRLQRND----RVTNEQ-  357 (513)
Q Consensus       293 ---~~~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h------~~~v~~v~~~~----~~~s~~-  357 (513)
                         ..|...|.+++|+|+ +.+|++|+.||.|++||++..+...   .+..|      ...|.+++|+|    .+++++ 
T Consensus       159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  235 (416)
T 2pm9_A          159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI---HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG  235 (416)
T ss_dssp             CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE---EECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred             ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce---EEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence               247788999999999 6899999999999999999887543   44444      88999999998    455554 


Q ss_pred             ---------eecccCcccceeEe--ecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEE
Q 037288          358 ---------WFELKANIWPSHTT--FMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI  425 (513)
Q Consensus       358 ---------w~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~  425 (513)
                               |+...+.. +...+  .+...+.++ .|+| ++++|++++.||.|++||++  ...++..+.+|...+.. 
T Consensus       236 d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~-~~s~~~~~~l~s~~~dg~v~~wd~~--~~~~~~~~~~~~~~v~~-  310 (416)
T 2pm9_A          236 SDNDPSILIWDLRNANT-PLQTLNQGHQKGILSL-DWCHQDEHLLLSSGRDNTVLLWNPE--SAEQLSQFPARGNWCFK-  310 (416)
T ss_dssp             CSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEE-EECSSCSSCEEEEESSSEEEEECSS--SCCEEEEEECSSSCCCC-
T ss_pred             CCCCceEEEEeCCCCCC-CcEEeecCccCceeEE-EeCCCCCCeEEEEeCCCCEEEeeCC--CCccceeecCCCCceEE-
Confidence                     66665432 22333  356677776 6777 99999999999999999997  55688899999999877 


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEec-----------------------------------CCCCCeEEE
Q 037288          426 QLGVDQSE-RFVMSGGEDCKLRIWSIRSGELVFEDK-----------------------------------FSNSVPSAV  469 (513)
Q Consensus       426 ~~~~s~~g-~~l~sg~~Dg~v~vwd~~~~~~~~~~~-----------------------------------~~~~~v~~v  469 (513)
                       ++|+|++ .+|++++.||.|++||+.+++......                                   .+..+++++
T Consensus       311 -~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (416)
T 2pm9_A          311 -TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA  389 (416)
T ss_dssp             -EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCC
T ss_pred             -EEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccce
Confidence             8999998 899999999999999998765322111                                   156678899


Q ss_pred             EEcCCCceEEeeCCC
Q 037288          470 CWRTQRSMGPQIEGK  484 (513)
Q Consensus       470 ~~~p~~~~~~t~~~~  484 (513)
                      +|+|++.++++++.|
T Consensus       390 ~~s~dg~~la~~~~d  404 (416)
T 2pm9_A          390 HWAFGGKLVQITPDG  404 (416)
T ss_dssp             EEETTTEEECBCTTS
T ss_pred             EEeeCCeEEEEeCCC
Confidence            999999998888765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=2.1e-27  Score=239.56  Aligned_cols=249  Identities=11%  Similarity=0.081  Sum_probs=187.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .+|.+.+|++.+.            .....+.+|...|.+++|+|++++|++|+. +.|++||+.+++.+..+. |...|
T Consensus       117 ~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  184 (420)
T 3vl1_A          117 TEGDIKVLDSNFN------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV  184 (420)
T ss_dssp             TTSCEEEECTTSC------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred             CCCCEEEEeCCCc------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence            4677888876532            224456799999999999999999998875 559999999988766665 88889


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe---------------------eCC---eEEE
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ---------------------RND---RVTN  355 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~---------------------~~~---~~~s  355 (513)
                      .+++|+|++++|++|+.||.|++||+++++....+.....|...|.++.                     |+|   .+++
T Consensus       185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  264 (420)
T 3vl1_A          185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA  264 (420)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence            9999999999999999999999999998876442223234445555544                     455   5666


Q ss_pred             eE-------eecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecCCeEEEEecCCCCcc-ceEEecC-CCCceeEE
Q 037288          356 EQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMDGTVKLYDHRLTTRG-AVQSYEG-HVNSHTRI  425 (513)
Q Consensus       356 ~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~-h~~~v~~~  425 (513)
                      ++       |+...+.........+...+.++ .++|++. +|++|+.||.|++||++  ... ++..+.+ |...+.. 
T Consensus       265 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~g~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~-  340 (420)
T 3vl1_A          265 GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL-TVDGNNANYIYAGYENGMLAQWDLR--SPECPVGEFLINEGTPINN-  340 (420)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCTTSSCEEEE-EECSSCTTEEEEEETTSEEEEEETT--CTTSCSEEEEESTTSCEEE-
T ss_pred             EcCCCeEEEEECCCCceeEEcccccCCCceeE-EEeCCCCCEEEEEeCCCeEEEEEcC--CCcCchhhhhccCCCCceE-
Confidence            65       88877664322222345567765 7788888 99999999999999997  433 5777776 5555554 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCe---------EEEEecCCCCCeEEEEEcCCCc----eEEeeCCCeeee
Q 037288          426 QLGVDQSERFVMSGGEDCKLRIWSIRSGE---------LVFEDKFSNSVPSAVCWRTQRS----MGPQIEGKIHEE  488 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~---------~~~~~~~~~~~v~~v~~~p~~~----~~~t~~~~~~~~  488 (513)
                       + +.+++++|++++.||.|++|++....         ....+..+...|.+++|+|++.    +++++..+....
T Consensus       341 -~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~  414 (420)
T 3vl1_A          341 -V-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL  414 (420)
T ss_dssp             -E-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred             -E-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence             4 44678899999999999999988731         1223456778899999999966    788887776653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=1.6e-26  Score=225.29  Aligned_cols=243  Identities=13%  Similarity=0.138  Sum_probs=195.9

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCc--EEEEe-eeCCC
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGM--ASWVC-RSKSD  298 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~--~~~~~-~~~~~  298 (513)
                      +|.+.+|++.+......       .......+|...|.+++|+|+++++++++. +.|++||+.+++  ....+ .|...
T Consensus        71 dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  143 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSP-------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA  143 (337)
T ss_dssp             BSEEEEEETTSTTCCSC-------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred             CCeEEEEECCCCCceee-------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc
Confidence            68899998875443211       011223378999999999999999998864 569999999887  33333 36778


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccce
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPS  368 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~  368 (513)
                      |.+++|+|++++|++++.||.|++||+++++.   +..+.+|...|.+++|+|   .+++++       |+...++..  
T Consensus       144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--  218 (337)
T 1gxr_A          144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTL---VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL--  218 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCce---eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE--
Confidence            99999999999999999999999999998865   447888999999999998   666665       888776543  


Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                      ..+.+...+.++ .++|++++|++++.|+.|++||++   ......+..|...+..  ++|+|++++|++++.||.|++|
T Consensus       219 ~~~~~~~~v~~~-~~s~~~~~l~~~~~~~~i~~~~~~---~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~~~  292 (337)
T 1gxr_A          219 QQHDFTSQIFSL-GYCPTGEWLAVGMESSNVEVLHVN---KPDKYQLHLHESCVLS--LKFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             EEEECSSCEEEE-EECTTSSEEEEEETTSCEEEEETT---SSCEEEECCCSSCEEE--EEECTTSSEEEEEETTSEEEEE
T ss_pred             eeecCCCceEEE-EECCCCCEEEEEcCCCcEEEEECC---CCCeEEEcCCccceeE--EEECCCCCEEEEecCCCcEEEE
Confidence            345566677775 788999999999999999999996   3345567889988877  8999999999999999999999


Q ss_pred             eCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          449 SIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       449 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      |+.+++.+.... |...+.+++|+|++.++++++.+
T Consensus       293 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          293 RTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETT
T ss_pred             ECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCC
Confidence            999999886654 57789999999998777766655

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-26  Score=233.01  Aligned_cols=238  Identities=12%  Similarity=0.101  Sum_probs=193.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCC-
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSD-  298 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~-  298 (513)
                      .+|.+.+|+..             ...+..+.+|...|.+++|+|++.+|++++. +.|++||+.+++.+..+. +... 
T Consensus       128 ~dg~i~i~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          128 ENGELRLWNKT-------------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             TTSCEEEEETT-------------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             CCCeEEEEeCC-------------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            46778888722             1135668899999999999999999988864 569999999998877666 3333 


Q ss_pred             --------------eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE----
Q 037288          299 --------------ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ----  357 (513)
Q Consensus       299 --------------V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~----  357 (513)
                                    +.+++|++++ .+++++.||.|++||++..+.   +..+..|..+|.+++|+|   .+++++    
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP---TGKLIGHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             -----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC---SEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             cceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce---eeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence                          8999999875 588889999999999998865   447789999999999998   566666    


Q ss_pred             ---eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC
Q 037288          358 ---WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE  433 (513)
Q Consensus       358 ---w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g  433 (513)
                         |+...+...  ..+. +...+.++ .++|++ +|++++.|+.|++||++  ....+..+..|...+..  ++|+|++
T Consensus       271 i~i~d~~~~~~~--~~~~~~~~~i~~~-~~~~~~-~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~--~~~s~~~  342 (425)
T 1r5m_A          271 LRIWHGGNGNSQ--NCFYGHSQSIVSA-SWVGDD-KVISCSMDGSVRLWSLK--QNTLLALSIVDGVPIFA--GRISQDG  342 (425)
T ss_dssp             EEEECSSSBSCS--EEECCCSSCEEEE-EEETTT-EEEEEETTSEEEEEETT--TTEEEEEEECTTCCEEE--EEECTTS
T ss_pred             EEEEECCCCccc--eEecCCCccEEEE-EECCCC-EEEEEeCCCcEEEEECC--CCcEeEecccCCccEEE--EEEcCCC
Confidence               887765533  3333 45566665 677888 99999999999999997  55588888899988877  8999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe--------------------EEEEecCCCC--CeEEEEEcCCCceEEeeCCC
Q 037288          434 RFVMSGGEDCKLRIWSIRSGE--------------------LVFEDKFSNS--VPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       434 ~~l~sg~~Dg~v~vwd~~~~~--------------------~~~~~~~~~~--~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ++|++++.||.|++||+.+++                    ++..+..|..  .|++++|+|++.++++++.+
T Consensus       343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  415 (425)
T 1r5m_A          343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL  415 (425)
T ss_dssp             SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred             CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence            999999999999999999988                    8889988866  99999999998777766655

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=6.4e-27  Score=229.99  Aligned_cols=225  Identities=12%  Similarity=0.149  Sum_probs=177.4

Q ss_pred             eEEeccccCcEEEEEE-----cC-CCCEEEEEeC-CeEEEEECCCC-------cEEEEe-eeCCCeEEEEEecCCcEEEE
Q 037288          249 MHLVASFKCTVWTADF-----CT-NPSQAVIGTN-LGAAMVDMETG-------MASWVC-RSKSDILAQQVIHSGNVVLC  313 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~-----s~-~g~~l~s~s~-~~i~vwd~~~~-------~~~~~~-~~~~~V~~l~~~~~~~~l~s  313 (513)
                      ...+.+|.+.|++++|     ++ ++.+|++|+. ++|++||+.++       .+...+ .|...|.+++|+|++.+|++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            4568999999999999     76 8999999875 55999998754       233333 48888999999999999999


Q ss_pred             EeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeE-eecCCCceEEEE
Q 037288          314 GFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHT-TFMPSSISCLQS  382 (513)
Q Consensus       314 g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~-~~~~~~v~~~~~  382 (513)
                      |+.|++|++||+++++.   +..+.+|...|.+++|+|   .+++++       |+........... ..+...+.++ .
T Consensus        94 ~s~D~~v~lwd~~~~~~---~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~  169 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTT---YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV-R  169 (343)
T ss_dssp             EETTSEEEEEETTSSCE---EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEE-E
T ss_pred             EcCCCcEEEEECCCCcE---EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeee-e
Confidence            99999999999998875   458899999999999998   677776       8876322111000 0234455554 6


Q ss_pred             EcCCC----------CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          383 LQLYD----------QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       383 ~~~~~----------~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      ++|++          .+|++++.|+.|++||.   .......+.+|...+..  ++|+|+|++|++|+.||.|++||+.+
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~---~~~~~~~~~~h~~~v~~--~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNH--LSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET---TTEEEEEEECCSSCEEE--EEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEcC---CCceeEEEcCccccceE--EEECCCCCEEEEEcCCCeEEEEECCC
Confidence            77765          79999999999999995   44577788999999877  89999999999999999999999954


Q ss_pred             -CeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          453 -GELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       453 -~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                       ..+...+. +...|.+++|+|++.+++++..
T Consensus       245 ~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d  275 (343)
T 2xzm_R          245 LTYPQREFD-AGSTINQIAFNPKLQWVAVGTD  275 (343)
T ss_dssp             CSSCSEEEE-CSSCEEEEEECSSSCEEEEEES
T ss_pred             Ccccceeec-CCCcEEEEEECCCCCEEEEECC
Confidence             44444443 3556999999999776665543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=2e-27  Score=234.52  Aligned_cols=235  Identities=8%  Similarity=0.072  Sum_probs=172.2

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCcEEEEe----ee
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGMASWVC----RS  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~~~~~~----~~  295 (513)
                      .+|.+.+|++.+..            .+..+.+|...|.+++|+| ++.+|++|+. +.|++||+.+++....+    .|
T Consensus        93 ~dg~i~v~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  160 (366)
T 3k26_A           93 SRGIIRIINPITMQ------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH  160 (366)
T ss_dssp             TTCEEEEECTTTCC------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred             CCCEEEEEEchhce------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence            57788888876432            3456789999999999999 9999998875 56999999999988876    48


Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeEeecccCcccce-eEe
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQWFELKANIWPS-HTT  371 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~~~~~~~~-~~~  371 (513)
                      ...|.+++|+|++++|++|+.||.|++||+++.+...   .+..+      +.+++   .+......   ...... ...
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~  228 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN---AIKES------YDYNPNKTNRPFISQK---IHFPDFSTRD  228 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHH---HHHHH------HTCCGGGCSSCCCCEE---ECCCSEEECS
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccc---cccee------EEecCCCCccccccee---eccCcccccc
Confidence            8889999999999999999999999999998765432   22110      00000   00000000   000000 011


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc------------cceEEecCCCCceeEEEEEEcCC--CCEEE
Q 037288          372 FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR------------GAVQSYEGHVNSHTRIQLGVDQS--ERFVM  437 (513)
Q Consensus       372 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~------------~~~~~~~~h~~~v~~~~~~~s~~--g~~l~  437 (513)
                      .+...+.++ .++  +++|++++.|+.|++||++....            ..+..+.+|...+..  ++|+|+  +++|+
T Consensus       229 ~~~~~v~~~-~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~~~~~~l~  303 (366)
T 3k26_A          229 IHRNYVDCV-RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY--MRFSMDFWQKMLA  303 (366)
T ss_dssp             SCSSCCCEE-EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC--CCCEECTTSSEEE
T ss_pred             CCcceEEEE-EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE--EEEcCCCCCcEEE
Confidence            144556665 344  77999999999999999974322            237788889988888  677777  99999


Q ss_pred             EEeCCCcEEEEeCCCCe----EEEEecCC--CCCeEEEEEcCCCceEEeeCCCe
Q 037288          438 SGGEDCKLRIWSIRSGE----LVFEDKFS--NSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       438 sg~~Dg~v~vwd~~~~~----~~~~~~~~--~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +|+.||.|++||+.+++    ....+..|  ...|++++|+|++.++++++.|-
T Consensus       304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  357 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA  357 (366)
T ss_dssp             EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence            99999999999999875    44567776  68999999999988888877663

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=8.5e-26  Score=218.65  Aligned_cols=228  Identities=11%  Similarity=0.073  Sum_probs=185.1

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...+.+|...|.+++|+|++++|++|+. +.|++||+.+++....+. |...|.+++|+|++++|++|+.|+.|++||++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            4568899999999999999999998864 569999999998776665 77889999999999999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEec
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      +++.   +..+.+|...|.+++|+|   .+++++       |+...++.  ...+. +...+.++ .+++++++|++++.
T Consensus        96 ~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~-~~~~~~~~l~~~~~  169 (312)
T 4ery_A           96 SGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAV-HFNRDGSLIVSSSY  169 (312)
T ss_dssp             TCCE---EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEE-EECTTSSEEEEEET
T ss_pred             CCcE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE--EEEecCCCCcEEEE-EEcCCCCEEEEEeC
Confidence            8875   458889999999999998   677776       88877653  23333 34456654 78899999999999


Q ss_pred             CCeEEEEecCCCCccceEEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE--EEEEc
Q 037288          396 DGTVKLYDHRLTTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS--AVCWR  472 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~--~v~~~  472 (513)
                      ||.|++||++  ....+..+. .+...+..  ++|+|++++|++++.||.|++||+.+++++..+..|...+.  ...++
T Consensus       170 d~~i~~wd~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
T 4ery_A          170 DGLCRIWDTA--SGQCLKTLIDDDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS  245 (312)
T ss_dssp             TSCEEEEETT--TCCEEEEECCSSCCCEEE--EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred             CCcEEEEECC--CCceeeEEeccCCCceEE--EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence            9999999997  455666554 45556655  89999999999999999999999999999999887765432  23343


Q ss_pred             -CCCceEEeeCCCee
Q 037288          473 -TQRSMGPQIEGKIH  486 (513)
Q Consensus       473 -p~~~~~~t~~~~~~  486 (513)
                       +++.++++++.|-.
T Consensus       246 ~~~~~~l~sg~~dg~  260 (312)
T 4ery_A          246 VTGGKWIVSGSEDNL  260 (312)
T ss_dssp             CSSSCEEEECCTTSC
T ss_pred             eCCCcEEEEECCCCE
Confidence             55777777766543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.2e-27  Score=236.83  Aligned_cols=249  Identities=12%  Similarity=0.059  Sum_probs=198.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCC----CcEEEEee-
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMET----GMASWVCR-  294 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~----~~~~~~~~-  294 (513)
                      ..+|.+.+|++.+.....          ......|...|.+++|+|++.+|++|+. +.|++||+.+    .+....+. 
T Consensus        42 ~~d~~v~iw~~~~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~  111 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEK----------PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN  111 (416)
T ss_dssp             CCCCCCEEEESSSGGGCS----------CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC
T ss_pred             CCCCeEEEEEccCCCCCc----------EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC
Confidence            467888889887543210          1113458899999999999999998865 5699999987    33554444 


Q ss_pred             eCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCc------cccccccccccCcCeEEEeeCC----eEEEeE------
Q 037288          295 SKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQ------RGCSSRAGRRHRIPYSRLQRND----RVTNEQ------  357 (513)
Q Consensus       295 ~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------  357 (513)
                      |...|.+++|+|+ +++|++|+.||.|++||++..+      ....+..+..|...|.+++|+|    .+++++      
T Consensus       112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~  191 (416)
T 2pm9_A          112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFAS  191 (416)
T ss_dssp             SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEE
T ss_pred             CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEE
Confidence            8888999999998 8999999999999999999876      3222345678999999999998    466655      


Q ss_pred             -eecccCcccceeEeec-------CCCceEEEEEcCCC-CEEEEEecCC---eEEEEecCCCCc-cceEEec-CCCCcee
Q 037288          358 -WFELKANIWPSHTTFM-------PSSISCLQSLQLYD-QYFLASSMDG---TVKLYDHRLTTR-GAVQSYE-GHVNSHT  423 (513)
Q Consensus       358 -w~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~-~~l~s~s~dg---~i~lwd~~~~~~-~~~~~~~-~h~~~v~  423 (513)
                       |+...+...  ..+..       ...+.++ .|+|++ .+|++++.|+   .|++||++  .. .++..+. +|...+.
T Consensus       192 iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~d~~~~~i~~~d~~--~~~~~~~~~~~~~~~~v~  266 (416)
T 2pm9_A          192 IWDLKAKKEV--IHLSYTSPNSGIKQQLSVV-EWHPKNSTRVATATGSDNDPSILIWDLR--NANTPLQTLNQGHQKGIL  266 (416)
T ss_dssp             EEETTTTEEE--EEECCCCCSSCCCCCEEEE-EECSSCTTEEEEEECCSSSCCCCEEETT--STTSCSBCCCSCCSSCEE
T ss_pred             EEECCCCCcc--eEEeccccccccCCceEEE-EECCCCCCEEEEEECCCCCceEEEEeCC--CCCCCcEEeecCccCcee
Confidence             888776643  23332       4556665 777876 6999999998   99999998  43 4677787 8999887


Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC-ceEEeeCCCee
Q 037288          424 RIQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR-SMGPQIEGKIH  486 (513)
Q Consensus       424 ~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~~t~~~~~~  486 (513)
                      .  ++|+| ++++|++++.||.|++||+.+++++..+..|...|++++|+|++ .++++++.|-.
T Consensus       267 ~--~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~  329 (416)
T 2pm9_A          267 S--LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK  329 (416)
T ss_dssp             E--EEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred             E--EEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence            7  89999 89999999999999999999999999999999999999999997 78888776644

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-26  Score=224.73  Aligned_cols=231  Identities=12%  Similarity=0.107  Sum_probs=174.1

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCC--cEEEEe--e-eCCCeEEEEEecCCcEEEEEeCCCeEE
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETG--MASWVC--R-SKSDILAQQVIHSGNVVLCGFRNGAIV  321 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~--~~~~~~--~-~~~~V~~l~~~~~~~~l~sg~~dg~i~  321 (513)
                      .+..+.+|...|++++|+++  +|++|+ |+.|++||+.++  .....+  . |...|.+++|+|++++|++|+.|++|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            35678999999999999988  888775 556999999875  344444  2 778899999999999999999999999


Q ss_pred             EEECCCCcc----ccccccccccCcCeEEEeeCC---eEEEeE-------eecccCc--ccceeEee-cCCCceEEEEEc
Q 037288          322 TVDVRKRQR----GCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKAN--IWPSHTTF-MPSSISCLQSLQ  384 (513)
Q Consensus       322 iwd~~~~~~----~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~--~~~~~~~~-~~~~v~~~~~~~  384 (513)
                      +||+.....    ...+..+.+|...|.+++|+|   .+++++       |+.....  ......+. |...+.++ .|+
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v-~~~  162 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV-IWH  162 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE-EEC
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE-EEC
Confidence            999964321    111456889999999999999   677777       8884332  12223333 45566665 788


Q ss_pred             CCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--------e
Q 037288          385 LYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS--ERFVMSGGEDCKLRIWSIRSG--------E  454 (513)
Q Consensus       385 ~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~--g~~l~sg~~Dg~v~vwd~~~~--------~  454 (513)
                      |++.+|++|+.|+.|++||.+.....++..+.+|...|..  ++|+|+  +.+|++|+.|++|++||+.++        .
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS--SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE--EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE--EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999862222478899999999877  889998  778999999999999999765        4


Q ss_pred             EEEEecC-CCCCeEEEEEcCCCceEEeeCCC
Q 037288          455 LVFEDKF-SNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       455 ~~~~~~~-~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +...+.. |...|.+++|++++. +++++.|
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~~-l~s~~~d  270 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNGL-IASVGAD  270 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTSC-EEEEETT
T ss_pred             EeeecccccccceEEEEEcCCCE-EEEEeCC
Confidence            4555554 888999999998774 4444433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=7.9e-28  Score=233.70  Aligned_cols=232  Identities=12%  Similarity=0.073  Sum_probs=173.5

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcE--EEEe-eeCCCeEEEEEec--CCcEEEEEeCCCeEEEEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMA--SWVC-RSKSDILAQQVIH--SGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~--~~~~-~~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd  324 (513)
                      .+.+|.+.|++++|+|+|++|++|+. ++|+|||+.++..  +..+ .|...|.+++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            36799999999999999999999874 5699999988753  3333 4888999999985  489999999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCccc-ceeE-eecCCCceEEEEEcCC----
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIW-PSHT-TFMPSSISCLQSLQLY----  386 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~----  386 (513)
                      ++++.... ...+.+|...|.+++|+|     .+++++       |+...+... .... ..|...+.++ .|+|+    
T Consensus        88 ~~~~~~~~-~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~  165 (316)
T 3bg1_A           88 EENGTWEK-SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV-SWAPAVVPG  165 (316)
T ss_dssp             CSSSCCCE-EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC-EECCCCCC-
T ss_pred             CCCCcceE-EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE-EEccccCCc
Confidence            98765333 457889999999999988     466665       777654211 0111 1233445554 55555    


Q ss_pred             -------------CCEEEEEecCCeEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCCC----CEEEEEeCCCcEEEE
Q 037288          387 -------------DQYFLASSMDGTVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSE----RFVMSGGEDCKLRIW  448 (513)
Q Consensus       387 -------------~~~l~s~s~dg~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g----~~l~sg~~Dg~v~vw  448 (513)
                                   +++|++|+.|+.|++||++.... .++.++.+|...|..  ++|+|++    .+|++|+.|++|++|
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~--v~~sp~~~~~~~~las~s~D~~v~iw  243 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD--VAWAPSIGLPTSTIASCSQDGRVFIW  243 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE--EECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE--EEecCCCCCCCceEEEEcCCCeEEEE
Confidence                         47899999999999999962111 266788999999877  8999986    899999999999999


Q ss_pred             eCCCC---e-EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          449 SIRSG---E-LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       449 d~~~~---~-~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ++.+.   + ....+..|...|.+++|+|++.++|+++.|-.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            99762   1 12234557789999999999888887776643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=9.8e-26  Score=238.57  Aligned_cols=246  Identities=12%  Similarity=0.053  Sum_probs=184.0

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccC---cEEEEEEcCC-CCEEEEEe-CCeEEEEECCCCcEEEEe--
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKC---TVWTADFCTN-PSQAVIGT-NLGAAMVDMETGMASWVC--  293 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~s~~-g~~l~s~s-~~~i~vwd~~~~~~~~~~--  293 (513)
                      ..+|.+.+|++.+.            ..+..+.+|..   .|.+++|+|+ ++++++++ ++.|++||+.+++.+..+  
T Consensus       180 ~~d~~v~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  247 (615)
T 1pgu_A          180 GDDGSVVFYQGPPF------------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED  247 (615)
T ss_dssp             ETTTEEEEEETTTB------------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred             eCCCcEEEEeCCCc------------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence            35678888875422            23566888999   9999999999 99999886 556999999999988888  


Q ss_pred             ---eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc-------------------------------------
Q 037288          294 ---RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS-------------------------------------  333 (513)
Q Consensus       294 ---~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------------------------------------  333 (513)
                         .|...|.+++|+ ++.+|++++.|+.|++||+++++....                                     
T Consensus       248 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          248 DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEEC
Confidence               788889999999 999999999999999999986643210                                     


Q ss_pred             -----cccccccCcC---------------------------------eEEEeeCC--eEEEeE-------eecccCcc-
Q 037288          334 -----SRAGRRHRIP---------------------------------YSRLQRND--RVTNEQ-------WFELKANI-  365 (513)
Q Consensus       334 -----~~~~~~h~~~---------------------------------v~~v~~~~--~~~s~~-------w~~~~~~~-  365 (513)
                           +..+.+|..+                                 |.+++|.+  .+++++       |+...+.. 
T Consensus       327 ~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  406 (615)
T 1pgu_A          327 GHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG  406 (615)
T ss_dssp             TEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred             CCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence                 1122333333                                 44444432  444443       44432211 


Q ss_pred             -------------------------------cceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCccce-
Q 037288          366 -------------------------------WPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRGAV-  412 (513)
Q Consensus       366 -------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~~~-  412 (513)
                                                     .....+.+...+.++ .++  +++|++++. |+.|++||+.  ..... 
T Consensus       407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~~~~~d~~i~~~~~~--~~~~~~  481 (615)
T 1pgu_A          407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV-SLS--QNYVAVGLEEGNTIQVFKLS--DLEVSF  481 (615)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE-EEC--SSEEEEEETTTSCEEEEETT--EEEEEE
T ss_pred             CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE-EEc--CCEEEEeecCCCeEEEEECC--Cccccc
Confidence                                           111222334455554 444  889999999 9999999996  32222 


Q ss_pred             EEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-CCCCeEEEEEcC----------CCceEEee
Q 037288          413 QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-SNSVPSAVCWRT----------QRSMGPQI  481 (513)
Q Consensus       413 ~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-~~~~v~~v~~~p----------~~~~~~t~  481 (513)
                      ..+.+|...+..  ++|+|++++|++|+.||.|++||+.+++++..+.. |...|++++|+|          ++.+++++
T Consensus       482 ~~~~~~~~~v~~--~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~  559 (615)
T 1pgu_A          482 DLKTPLRAKPSY--ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  559 (615)
T ss_dssp             ECSSCCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             cccCCccCceEE--EEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEE
Confidence            667889998877  89999999999999999999999999999999887 899999999999          88888887


Q ss_pred             CCCee
Q 037288          482 EGKIH  486 (513)
Q Consensus       482 ~~~~~  486 (513)
                      +.|-.
T Consensus       560 ~~dg~  564 (615)
T 1pgu_A          560 SLDTN  564 (615)
T ss_dssp             ETTSC
T ss_pred             cCCCc
Confidence            76633

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=4.1e-26  Score=225.09  Aligned_cols=248  Identities=9%  Similarity=0.046  Sum_probs=190.7

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDIL  300 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~  300 (513)
                      .+|.+.+|++.+....          ....+.+|...|.+++|+|++++|++++. +.|++||+.+++......|...|.
T Consensus        62 ~dg~i~iw~~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~  131 (368)
T 3mmy_A           62 WANDVRCWEVQDSGQT----------IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK  131 (368)
T ss_dssp             TTSEEEEEEECTTSCE----------EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred             CCCcEEEEEcCCCCce----------eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE
Confidence            5788888988742211          22568889999999999999999998865 559999999999888888999999


Q ss_pred             EEEE--ecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeE
Q 037288          301 AQQV--IHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHT  370 (513)
Q Consensus       301 ~l~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~  370 (513)
                      +++|  ++++++|++|+.||.|++||+++++...   .+..|. .+.++.+.+ .++.+.       |+...........
T Consensus       132 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  207 (368)
T 3mmy_A          132 TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM---VLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI  207 (368)
T ss_dssp             EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE---EEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred             EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE---EEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhc
Confidence            9999  8899999999999999999999887533   555554 566666666 444444       7766543221111


Q ss_pred             e-ecCCCceEEEEEcCCCCE----EEEEecCCeEEEEecCCCCc-cceEEecCCCC------------ceeEEEEEEcCC
Q 037288          371 T-FMPSSISCLQSLQLYDQY----FLASSMDGTVKLYDHRLTTR-GAVQSYEGHVN------------SHTRIQLGVDQS  432 (513)
Q Consensus       371 ~-~~~~~v~~~~~~~~~~~~----l~s~s~dg~i~lwd~~~~~~-~~~~~~~~h~~------------~v~~~~~~~s~~  432 (513)
                      . .......++ .+.++...    +++++.||.|++||++.... ..+..+.+|..            .+..  ++|+|+
T Consensus       208 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~sp~  284 (368)
T 3mmy_A          208 ESPLKHQHRCV-AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG--IAFHPV  284 (368)
T ss_dssp             CCSCSSCEEEE-EEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE--EEECTT
T ss_pred             cccccCCCceE-EEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEE--EEEecC
Confidence            1 112233333 33333333    99999999999999984322 36778888876            5655  899999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          433 ERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       433 g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +++|++|+.||.|++||+.+++++..+..|..+|++++|+|++.++++++.+-.
T Consensus       285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence            999999999999999999999999999999999999999999887777766533

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=8e-27  Score=233.41  Aligned_cols=214  Identities=12%  Similarity=0.122  Sum_probs=170.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccc-----cCcEEEEEEc----CCCCE-EEEEeC-CeEEEEECCC----
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASF-----KCTVWTADFC----TNPSQ-AVIGTN-LGAAMVDMET----  286 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~~~~s----~~g~~-l~s~s~-~~i~vwd~~~----  286 (513)
                      .+|.+.+|++.+....       ....+..+..|     ...|.+++|+    |++.+ |++++. +.|++||+.+    
T Consensus        89 ~dg~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           89 FSGDLLFYRITREDET-------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             TTSCEEEEEEEECTTT-------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             CCCCEEEEEccCCccc-------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            4678888887654321       00114557778     5999999999    99999 888865 5599999988    


Q ss_pred             --CcEEE-----Ee--------eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccc---c---CcCeE
Q 037288          287 --GMASW-----VC--------RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRR---H---RIPYS  345 (513)
Q Consensus       287 --~~~~~-----~~--------~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---h---~~~v~  345 (513)
                        ++.+.     .+        .|...|.+++|+|++ +|++|+.||.|++||+++.+..   ..+..   |   ..+|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL---YNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE---EEEECCC---CCCCCEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee---EEEeccccccccCCccc
Confidence              54332     33        267789999999999 9999999999999999987653   35555   6   66666


Q ss_pred             EEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCccceEEecC-----
Q 037288          346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTRGAVQSYEG-----  417 (513)
Q Consensus       346 ~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~~~~~~~~~-----  417 (513)
                      ++                                  .|+|++++|++++.|   |.|++||++  ....+..+.+     
T Consensus       238 ~i----------------------------------~~~~~~~~l~~~~~d~~~g~i~i~d~~--~~~~~~~~~~~~~~~  281 (397)
T 1sq9_A          238 SV----------------------------------KFSPQGSLLAIAHDSNSFGCITLYETE--FGERIGSLSVPTHSS  281 (397)
T ss_dssp             EE----------------------------------EECSSTTEEEEEEEETTEEEEEEEETT--TCCEEEEECBC----
T ss_pred             eE----------------------------------EECCCCCEEEEEecCCCCceEEEEECC--CCcccceeccCcccc
Confidence            64                                  556789999999999   999999997  5568888888     


Q ss_pred             --------CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec------CC---------------CCCeEE
Q 037288          418 --------HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK------FS---------------NSVPSA  468 (513)
Q Consensus       418 --------h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~------~~---------------~~~v~~  468 (513)
                              |...+..  ++|+|++++|++|+.||.|++||+.+++++..+.      .|               ...|++
T Consensus       282 ~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~  359 (397)
T 1sq9_A          282 QASLGEFAHSSWVMS--LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD  359 (397)
T ss_dssp             ----CCBSBSSCEEE--EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred             cccccccccCCcEEE--EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeE
Confidence                    9988877  8999999999999999999999999999999998      77               899999


Q ss_pred             EEEcCCC----------ceEEeeCCC
Q 037288          469 VCWRTQR----------SMGPQIEGK  484 (513)
Q Consensus       469 v~~~p~~----------~~~~t~~~~  484 (513)
                      ++|+|++          .++++++.|
T Consensus       360 ~~~~~~g~~~~~~~~~~~~l~s~~~d  385 (397)
T 1sq9_A          360 VKFLKKGWRSGMGADLNESLCCVCLD  385 (397)
T ss_dssp             EEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred             EEeccccccccccccccceEEEecCC
Confidence            9999997          566666555

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=2.1e-26  Score=234.12  Aligned_cols=208  Identities=15%  Similarity=0.158  Sum_probs=153.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCC-CcEEEEe--------eeCCCeEEEEEecCC-cEEEEEeCCCeEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMET-GMASWVC--------RSKSDILAQQVIHSG-NVVLCGFRNGAIV  321 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~-~~~~~~~--------~~~~~V~~l~~~~~~-~~l~sg~~dg~i~  321 (513)
                      ..+|...|.+++|+|++++|++|.|+.|++||+.+ ++....+        .|...|.+++|+|++ ++|++|+.||.|+
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            46899999999999999999999777799999994 4444433        477889999999998 9999999999999


Q ss_pred             EEECCCCcccc-ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          322 TVDVRKRQRGC-SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       322 iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      +||+++++... .+..+.+|..+...                     .....+...+.+ +.|+|++++|++++. +.|+
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~v~~-~~~s~~g~~l~~~~~-~~v~  309 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNR---------------------SFFSEIISSISD-VKFSHSGRYMMTRDY-LSVK  309 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----C---------------------CHHHHHTTCEEE-EEECTTSSEEEEEES-SEEE
T ss_pred             EEECcCCccccceeeEeccCCCcccc---------------------ccccccCceEEE-EEECCCCCEEEEeeC-CeEE
Confidence            99999876411 02345555431000                     000001112333 366779999999998 9999


Q ss_pred             EEecCCCC-ccceEEecCCCCcee-------------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec------
Q 037288          401 LYDHRLTT-RGAVQSYEGHVNSHT-------------RIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK------  460 (513)
Q Consensus       401 lwd~~~~~-~~~~~~~~~h~~~v~-------------~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~------  460 (513)
                      +||++  . ..++..+.+|...+.             ...++|+|++++|++|+.||.|++||+.+++.+....      
T Consensus       310 iwd~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~  387 (447)
T 3dw8_B          310 VWDLN--MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK  387 (447)
T ss_dssp             EEETT--CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCC
T ss_pred             EEeCC--CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccc
Confidence            99997  4 447888888864322             1237899999999999999999999999998764221      


Q ss_pred             --------------------------CCCCCeEEEEEcCCCceEEeeCCC
Q 037288          461 --------------------------FSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       461 --------------------------~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                                                .....|..++|+|++.++|++..+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~  437 (447)
T 3dw8_B          388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN  437 (447)
T ss_dssp             TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred             cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence                                      123468899999998877776655

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.5e-26  Score=226.69  Aligned_cols=232  Identities=10%  Similarity=0.054  Sum_probs=186.1

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECC--CCcEEEEee-eCCCeEEEEEecC--CcEEEEEeCCCeEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDME--TGMASWVCR-SKSDILAQQVIHS--GNVVLCGFRNGAIVT  322 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~--~~~~~~~~~-~~~~V~~l~~~~~--~~~l~sg~~dg~i~i  322 (513)
                      +..+.+|...|.+++|+|++++|++|+ |+.|++||+.  +++....+. |...|.+++|+++  +++|++|+.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            345889999999999999999999986 5569999998  444554444 8888999999977  899999999999999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCcccceeEe-ecCCCceEEEEEcC----
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIWPSHTT-FMPSSISCLQSLQL----  385 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~----  385 (513)
                      ||+++++... +..+..|...|.+++|+|     .+++++       |+...........+ .+...+.++ .++|    
T Consensus        84 wd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~  161 (379)
T 3jrp_A           84 WKEENGRWSQ-IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA-SWAPATIE  161 (379)
T ss_dssp             EEEETTEEEE-EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEE-EECCCC--
T ss_pred             EEcCCCceeE-eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEE-EEcCcccc
Confidence            9999886433 567888999999999997     367766       99887755444444 345566665 6777    


Q ss_pred             ---------CCCEEEEEecCCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCC---CCEEEEEeCCCcEEEEeCC
Q 037288          386 ---------YDQYFLASSMDGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQS---ERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       386 ---------~~~~l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~---g~~l~sg~~Dg~v~vwd~~  451 (513)
                               ++.+|++++.||.|++||++.....  .+..+.+|...+..  ++|+|+   +++|++++.||.|++||+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~--~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD--VAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE--EEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE--EEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                     6999999999999999999732222  55678899999877  899999   8999999999999999999


Q ss_pred             CCe---EEEEe--cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          452 SGE---LVFED--KFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       452 ~~~---~~~~~--~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +++   ....+  ..+...|++++|+|++.++++++.|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred             CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence            874   22232  3377889999999998777765554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.6e-25  Score=217.00  Aligned_cols=267  Identities=14%  Similarity=0.073  Sum_probs=211.5

Q ss_pred             ecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEc
Q 037288          186 MPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFC  265 (513)
Q Consensus       186 ~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  265 (513)
                      +...|+++.+++..          ..++.     +..+|.+.+|++.+..            .+..+.+|...|.+++|+
T Consensus        31 h~~~v~~~~~s~~~----------~~l~~-----~~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~~~~~   83 (369)
T 3zwl_B           31 HERPLTQVKYNKEG----------DLLFS-----CSKDSSASVWYSLNGE------------RLGTLDGHTGTIWSIDVD   83 (369)
T ss_dssp             CSSCEEEEEECTTS----------CEEEE-----EESSSCEEEEETTTCC------------EEEEECCCSSCEEEEEEC
T ss_pred             eeceEEEEEEcCCC----------CEEEE-----EeCCCEEEEEeCCCch------------hhhhhhhcCCcEEEEEEc
Confidence            44567777776543          22222     2357788888876432            356688999999999999


Q ss_pred             CCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC-----CeEEEEECCCCcccc-------
Q 037288          266 TNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN-----GAIVTVDVRKRQRGC-------  332 (513)
Q Consensus       266 ~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~-------  332 (513)
                      |++++|++++. +.|++||+.+++.+..+.+...|.+++|+|++++|++++.+     |.|++||+.......       
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  163 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE  163 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence            99999998865 56999999999999888899999999999999999999999     999999998765321       


Q ss_pred             -ccccccccCc--CeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          333 -SSRAGRRHRI--PYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       333 -~~~~~~~h~~--~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                       .+..+..|..  .+.+++|++   .+++++       |+...... ....+. +...+.++ .++|++++|++++.|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~d~~  241 (369)
T 3zwl_B          164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDM-QFSPDLTYFITSSRDTN  241 (369)
T ss_dssp             SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEE-EECTTSSEEEEEETTSE
T ss_pred             ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEE-EECCCCCEEEEecCCce
Confidence             1334555665  999999998   566665       88876322 223333 45566665 78899999999999999


Q ss_pred             EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC--------------cEEEEeCCCCeEEEEecCCCC
Q 037288          399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC--------------KLRIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg--------------~v~vwd~~~~~~~~~~~~~~~  464 (513)
                      |++||++  ....+..+. +...+..  ++|+|+++++++++.++              .+++||+.+++++..+..|..
T Consensus       242 i~v~d~~--~~~~~~~~~-~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  316 (369)
T 3zwl_B          242 SFLVDVS--TLQVLKKYE-TDCPLNT--AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG  316 (369)
T ss_dssp             EEEEETT--TCCEEEEEE-CSSCEEE--EEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEECC--CCceeeeec-CCCCcee--EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence            9999997  555677776 6666655  89999999999999998              899999999999999999999


Q ss_pred             CeEEEEEcCCCceEEeeCCCee
Q 037288          465 VPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       465 ~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .|++++|+|++.++++++.|-.
T Consensus       317 ~v~~~~~s~~~~~l~s~~~dg~  338 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGEDGF  338 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSE
T ss_pred             cEEEEEECCCCCEEEEEcCCCe
Confidence            9999999999888888876643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.2e-25  Score=217.26  Aligned_cols=227  Identities=11%  Similarity=0.067  Sum_probs=186.7

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ....+.+|...|.+++|+|++++|++|+ |+.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            3466899999999999999999999886 5569999999999887776 7888999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC---eEEEeE------------eecccCcccc---------eeEeec-CC--Cce
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------------WFELKANIWP---------SHTTFM-PS--SIS  378 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------------w~~~~~~~~~---------~~~~~~-~~--~v~  378 (513)
                      .+++...   .+. |..+|.+++|+|   .++++.            |+........         ...+.. ..  .+.
T Consensus       104 ~~~~~~~---~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          104 SNGQCVA---TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             TTCCEEE---EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             CCCcEEE---Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9887543   444 889999999999   444432            6666554321         111211 11  445


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEecCCCC-ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          379 CLQSLQLYDQYFLASSMDGTVKLYDHRLTT-RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       379 ~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      + ..+++++++|++++.||.|++||++  . ...+..+..|...+..  ++|+|++++|++++.||.|++||+.+++.+.
T Consensus       180 ~-~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          180 V-AGWSTKGKYIIAGHKDGKISKYDVS--NNYEYVDSIDLHEKSISD--MQFSPDLTYFITSSRDTNSFLVDVSTLQVLK  254 (369)
T ss_dssp             E-EEECGGGCEEEEEETTSEEEEEETT--TTTEEEEEEECCSSCEEE--EEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             E-EEEcCCCCEEEEEcCCCEEEEEECC--CCcEeEEEEecCCCceeE--EEECCCCCEEEEecCCceEEEEECCCCceee
Confidence            5 4788999999999999999999997  4 3478889999998877  8999999999999999999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          458 EDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       458 ~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .+. +...+..++|+|++.++++++.+
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          255 KYE-TDCPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             EEE-CSSCEEEEEECSSSSEEEEEECC
T ss_pred             eec-CCCCceeEEecCCCceEEEeecC
Confidence            887 57789999999997766665544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=4.7e-26  Score=231.40  Aligned_cols=248  Identities=13%  Similarity=0.099  Sum_probs=189.3

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEeee--
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVCRS--  295 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~--  295 (513)
                      +..+|.+.+|++......          ....+.+|.+.|++++|+| ++.+|++|+ |++|++||++++.......+  
T Consensus       138 Gs~dg~i~lWd~~~~~~~----------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  207 (435)
T 4e54_B          138 GSKGGDIMLWNFGIKDKP----------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT  207 (435)
T ss_dssp             EETTSCEEEECSSCCSCC----------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS
T ss_pred             EeCCCEEEEEECCCCCce----------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC
Confidence            346889999988754332          3445779999999999998 788999886 55699999987765544442  


Q ss_pred             -CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccC
Q 037288          296 -KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKA  363 (513)
Q Consensus       296 -~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~  363 (513)
                       ...+.+++|+|++++|++|+.||.|++||++...    +..+.+|...|.+++|+|    .+++++       |+++..
T Consensus       208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~  283 (435)
T 4e54_B          208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV  283 (435)
T ss_dssp             CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred             CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence             3347899999999999999999999999997543    558899999999999998    455665       988776


Q ss_pred             ccccee--EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc----eeEEEEEEcCCCCEEE
Q 037288          364 NIWPSH--TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS----HTRIQLGVDQSERFVM  437 (513)
Q Consensus       364 ~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~----v~~~~~~~s~~g~~l~  437 (513)
                      ......  ...|...|.++ .|+|++++|++++.||.|++||++  .......+..|...    +..+...|+|++..++
T Consensus       284 ~~~~~~~~~~~h~~~v~~~-~~spdg~~l~s~~~D~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (435)
T 4e54_B          284 RGKASFLYSLPHRHPVNAA-CFSPDGARLLTTDQKSEIRVYSAS--QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV  360 (435)
T ss_dssp             CSSSCCSBCCBCSSCEEEC-CBCTTSSEEEEEESSSCEEEEESS--SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEE
T ss_pred             cccceEEEeeeccccccce-eECCCCCeeEEEcCCCEEEEEECC--CCccceEEecccccccccceeEEEEEcCCCCEEE
Confidence            543222  23456677775 789999999999999999999997  44566666655432    2233456777777777


Q ss_pred             EEeC------------CCcEEEEeCCCCeEEEEec-CCCCCeEEE-EEcCCCceEEeeCCC
Q 037288          438 SGGE------------DCKLRIWSIRSGELVFEDK-FSNSVPSAV-CWRTQRSMGPQIEGK  484 (513)
Q Consensus       438 sg~~------------Dg~v~vwd~~~~~~~~~~~-~~~~~v~~v-~~~p~~~~~~t~~~~  484 (513)
                      +++.            ++.|++||..+++++..+. .|...|.++ +|+|++.++++++.+
T Consensus       361 ~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~  421 (435)
T 4e54_B          361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY  421 (435)
T ss_dssp             EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred             EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence            6643            4579999999999998864 567778776 699999888887644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=4.2e-26  Score=225.83  Aligned_cols=228  Identities=9%  Similarity=-0.016  Sum_probs=189.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCc--EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGM--ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~--~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      +..|..+|.+++|+|++++|++| .++.|++||+.+++  ....+. |...|.+++|+|++++|++|+.||.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45588999999999999999988 56669999999886  555554 888899999999999999999999999999988


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccc-eeEe--ecCCCceEEEEEcCCCCEEEEEe
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWP-SHTT--FMPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      .+... ...+..|...|.+++|+|   .+++++       |+...+.... ...+  .+...+.++ .++|++++|++++
T Consensus        84 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~  161 (372)
T 1k8k_C           84 RTWKP-TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL-DWHPNSVLLAAGS  161 (372)
T ss_dssp             TEEEE-EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE-EECTTSSEEEEEE
T ss_pred             Ceeee-eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE-EEcCCCCEEEEEc
Confidence            76443 345678999999999998   666666       8877665321 1122  235566665 7888999999999


Q ss_pred             cCCeEEEEecCC----------------CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288          395 MDGTVKLYDHRL----------------TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE  458 (513)
Q Consensus       395 ~dg~i~lwd~~~----------------~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~  458 (513)
                      .||.|++||++.                .....+..+.+|...+..  ++|+|++++|++++.||.|++||+.+++++..
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  239 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG--VCFSANGSRVAWVSHDSTVCLADADKKMAVAT  239 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE--EEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE--EEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence            999999999641                123477888899998877  89999999999999999999999999999999


Q ss_pred             ecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          459 DKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       459 ~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      +..|..+|.+++|+|++.+++++..
T Consensus       240 ~~~~~~~v~~~~~~~~~~~l~~~~d  264 (372)
T 1k8k_C          240 LASETLPLLAVTFITESSLVAAGHD  264 (372)
T ss_dssp             EECSSCCEEEEEEEETTEEEEEETT
T ss_pred             EccCCCCeEEEEEecCCCEEEEEeC
Confidence            9999999999999999887777744

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=5.6e-26  Score=222.32  Aligned_cols=246  Identities=13%  Similarity=0.110  Sum_probs=196.4

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEEC-CCCcEEEEee--eC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDM-ETGMASWVCR--SK  296 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~-~~~~~~~~~~--~~  296 (513)
                      .+|.+.+|++......         .....+.+|...|.+++|+|++. +|++|+ ++.|++||+ .+++......  |.
T Consensus        31 ~d~~v~iw~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  101 (342)
T 1yfq_A           31 WDGSLTVYKFDIQAKN---------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN  101 (342)
T ss_dssp             TTSEEEEEEEETTTTE---------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC
T ss_pred             CCCeEEEEEeCCCCcc---------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCC
Confidence            4688888887643211         11344668999999999999999 888886 556999999 9888876667  88


Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCC---------CccccccccccccCcCeEEEeeCC-eEEEeE-------ee
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRK---------RQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WF  359 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~  359 (513)
                      ..|.+++|+| +++|++++.|+.|++||++.         .+.   +..+. |...|.+++|++ .+++++       |+
T Consensus       102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d  176 (342)
T 1yfq_A          102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---SNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFR  176 (342)
T ss_dssp             SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC---SSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEE
T ss_pred             CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe---eeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEE
Confidence            8999999999 99999999999999999986         543   33444 899999999999 666665       88


Q ss_pred             ccc-Ccccce-eEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCC--C--ccceEEecCCCC---------cee
Q 037288          360 ELK-ANIWPS-HTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLT--T--RGAVQSYEGHVN---------SHT  423 (513)
Q Consensus       360 ~~~-~~~~~~-~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~--~--~~~~~~~~~h~~---------~v~  423 (513)
                      ... +..... ....+...+.++ .++| ++++|++++.||.|++||++..  .  ......+.+|..         .+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~i~~i-~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (342)
T 1yfq_A          177 LPLCEDDNGTIEESGLKYQIRDV-ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             SSCCTTCCCEEEECSCSSCEEEE-EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred             CCccccccceeeecCCCCceeEE-EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence            877 443222 223345566665 7888 9999999999999999999832  0  157778888865         666


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288          424 RIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       424 ~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .  ++|+|++++|++|+.||.|++||+.+++++..+..| ..+|++++  |++.++++++.|-.
T Consensus       256 ~--~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          256 S--IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             E--EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             E--EEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            5  899999999999999999999999999999999988 99999999  88777766665543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6e-25  Score=211.90  Aligned_cols=224  Identities=13%  Similarity=0.093  Sum_probs=184.5

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ....+.+|...|.+++| +++.+|++|+. +.|++||+.++.....+. |...|.+++|+|++++|++|+.||.|++||+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            46778999999999999 99999998865 559999999888666555 7788999999999999999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEe-ecCCCceEEEEEcCCCCEEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTT-FMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      ........+..+.+|...|.++.|+. .+++++       |+  .+.  ....+ .+...+.++.+.++++++|++++.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGS--LVYNLQAHNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTE--EEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred             eecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCc--EEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence            87654333567889999999999977 677766       77  221  22222 3567788887777799999999999


Q ss_pred             CeEEEEecCCCCccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288          397 GTVKLYDHRLTTRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                      |.|++||..    ..+..+.. |...+..  ++|+|++. +++++.||.|++||+++++++..+..|...|++++|+|++
T Consensus       165 ~~i~i~d~~----~~~~~~~~~~~~~i~~--~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          165 KTIKLWQND----KVIKTFSGIHNDVVRH--LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG  237 (313)
T ss_dssp             SCEEEEETT----EEEEEECSSCSSCEEE--EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCEEEEecC----ceEEEEeccCcccEEE--EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence            999999953    36667776 8888777  88899998 9999999999999999999999999999999999999998


Q ss_pred             ceEEeeCC
Q 037288          476 SMGPQIEG  483 (513)
Q Consensus       476 ~~~~t~~~  483 (513)
                      .+++++..
T Consensus       238 ~l~~~~~d  245 (313)
T 3odt_A          238 DIVSCGED  245 (313)
T ss_dssp             CEEEEETT
T ss_pred             CEEEEecC
Confidence            54444433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.5e-25  Score=241.30  Aligned_cols=226  Identities=15%  Similarity=0.182  Sum_probs=183.7

Q ss_pred             EEeccccCcEEEEEEcCCC-CEEEEEeC-CeEEEEECCCCc-----EE-EEeeeCCCeEEEEEecCCcEEEEEeCCCeEE
Q 037288          250 HLVASFKCTVWTADFCTNP-SQAVIGTN-LGAAMVDMETGM-----AS-WVCRSKSDILAQQVIHSGNVVLCGFRNGAIV  321 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g-~~l~s~s~-~~i~vwd~~~~~-----~~-~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~  321 (513)
                      ..+.+|.+.|++++|++++ .+|++|+. ++|++||+.+..     .. .+..|...|.+++|+|++++|++|+.||+|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            4588999999999999864 68888865 569999997642     23 3345888899999999999999999999999


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeE--eecCCCceEEEEEcCCC--
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHT--TFMPSSISCLQSLQLYD--  387 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~--  387 (513)
                      +||+.++..   ...+.+|...|.+++|+|   .+++++       |+...........  ..|...+.++ .++|++  
T Consensus       456 vwd~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~  531 (694)
T 3dm0_A          456 LWDLAAGVS---TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV-RFSPNTLQ  531 (694)
T ss_dssp             EEETTTTEE---EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE-EECSCSSS
T ss_pred             EEECCCCcc---eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE-EEeCCCCc
Confidence            999998875   458899999999999998   788887       8764332110000  1234456665 777776  


Q ss_pred             CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS  467 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~  467 (513)
                      ..|++++.|+.|++||++  .......+.+|.+.|.+  ++|+|++++|++|+.||+|++||+.+++++..+.. ...|.
T Consensus       532 ~~l~s~s~d~~v~vwd~~--~~~~~~~~~~h~~~v~~--v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~  606 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLS--NCKLRSTLAGHTGYVST--VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIH  606 (694)
T ss_dssp             CEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEE--EEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEE
T ss_pred             ceEEEEeCCCeEEEEECC--CCcEEEEEcCCCCCEEE--EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEE
Confidence            689999999999999997  55588889999999877  89999999999999999999999999999988765 46799


Q ss_pred             EEEEcCCCceEEeeCCC
Q 037288          468 AVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       468 ~v~~~p~~~~~~t~~~~  484 (513)
                      +++|+|++.+++++..+
T Consensus       607 ~~~~sp~~~~l~~~~~~  623 (694)
T 3dm0_A          607 ALCFSPNRYWLCAATEH  623 (694)
T ss_dssp             EEEECSSSSEEEEEETT
T ss_pred             EEEEcCCCcEEEEEcCC
Confidence            99999998777666544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=6e-25  Score=214.64  Aligned_cols=227  Identities=13%  Similarity=0.184  Sum_probs=181.2

Q ss_pred             eEEeccccCcEEEEEEcCC-CCEEEEEeC-CeEEEEECCCCc-----EEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeE
Q 037288          249 MHLVASFKCTVWTADFCTN-PSQAVIGTN-LGAAMVDMETGM-----ASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAI  320 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~-g~~l~s~s~-~~i~vwd~~~~~-----~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i  320 (513)
                      ..+|.||.+.|++++|+|+ +++|++|+. ++|+|||+.+++     +...+ .|...|.+++|+|++++|++|+.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3568999999999999997 689998875 569999987654     33333 378889999999999999999999999


Q ss_pred             EEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCC--CC
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLY--DQ  388 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~  388 (513)
                      ++|+.......   .....+...+..+.+.+   .+++++       |+.............+...+..+ .++++  ..
T Consensus       111 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~  186 (340)
T 4aow_A          111 RLWDLTTGTTT---RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV-RFSPNSSNP  186 (340)
T ss_dssp             EEEETTTTEEE---EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE-EECSCSSSC
T ss_pred             eEEeeccccee---eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce-EEccCCCCc
Confidence            99999887653   36677788888888887   677776       76654432222222334455554 55554  45


Q ss_pred             EEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEE
Q 037288          389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSA  468 (513)
Q Consensus       389 ~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~  468 (513)
                      ++++++.|+.|++||++  ....+..+.+|.+.|.+  ++|+|++++|++|+.||.|++||+.+++++..+..+ ..+.+
T Consensus       187 ~~~s~~~d~~i~i~d~~--~~~~~~~~~~h~~~v~~--~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~  261 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLA--NCKLKTNHIGHTGYLNT--VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINA  261 (340)
T ss_dssp             EEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEE--EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEE
T ss_pred             EEEEEcCCCEEEEEECC--CCceeeEecCCCCcEEE--EEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEe
Confidence            78899999999999997  55588899999999877  889999999999999999999999999999998764 57999


Q ss_pred             EEEcCCCceEEeeCCC
Q 037288          469 VCWRTQRSMGPQIEGK  484 (513)
Q Consensus       469 v~~~p~~~~~~t~~~~  484 (513)
                      ++|+|++.+++++..+
T Consensus       262 ~~~~~~~~~~~~~~d~  277 (340)
T 4aow_A          262 LCFSPNRYWLCAATGP  277 (340)
T ss_dssp             EEECSSSSEEEEEETT
T ss_pred             eecCCCCceeeccCCC
Confidence            9999997776666543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.5e-27  Score=237.20  Aligned_cols=230  Identities=10%  Similarity=0.061  Sum_probs=179.9

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCC--cEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETG--MASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~--~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ...|..+|++++|+|++++|++|+ |+.|++||+.++  +....+. |...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            445678999999999999999885 566999999988  4544444 788899999999999999999999999999998


Q ss_pred             Cc-cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcc-cceeEee--cCCCceEEEEEcCCCCEEEEE
Q 037288          328 RQ-RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANI-WPSHTTF--MPSSISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       328 ~~-~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~-~~~~~~~--~~~~v~~~~~~~~~~~~l~s~  393 (513)
                      +. ... ...+.+|...|.+++|+|   .+++++       |+...+.. .....+.  +...+.++ .++|++++|+++
T Consensus        87 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~~~  164 (377)
T 3dwl_C           87 DGTWKQ-TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL-DWHPNNVLLAAG  164 (377)
T ss_dssp             --CCCC-EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE-EECTTSSEEEEE
T ss_pred             CCceee-eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE-EEcCCCCEEEEE
Confidence            76 222 557889999999999998   677776       88776652 1223343  56677775 788999999999


Q ss_pred             ecCCeEEEEecCCC----------------CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--
Q 037288          394 SMDGTVKLYDHRLT----------------TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL--  455 (513)
Q Consensus       394 s~dg~i~lwd~~~~----------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~--  455 (513)
                      +.|+.|++||++..                ...++..+ +|...+..  ++|+|++++|++|+.||.|++||+.+++.  
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~--~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA--VGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE--EEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE--EEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            99999999998521                12255566 89988877  89999999999999999999999999987  


Q ss_pred             --EEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          456 --VFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       456 --~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                        +..+..|..+|.+++|+|++.++++++.+..
T Consensus       242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  274 (377)
T 3dwl_C          242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSP  274 (377)
T ss_dssp             EECCCEECSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred             eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE
Confidence              7778889999999999999888888776544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=4e-25  Score=237.98  Aligned_cols=250  Identities=14%  Similarity=0.123  Sum_probs=194.7

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~  298 (513)
                      ..+|.+.+|++.......       ......+.+|...|.+++|+|++++|++|+. +.|+|||+.++.....+. |...
T Consensus       402 s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~  474 (694)
T 3dm0_A          402 SRDKSIILWKLTKDDKAY-------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD  474 (694)
T ss_dssp             ETTSEEEEEECCCSTTCS-------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             eCCCcEEEEEccCCCccc-------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence            468899999887543221       1124568899999999999999999999874 569999999998776654 8888


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCccc
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIW  366 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~  366 (513)
                      |.+++|+|+++.|++|+.|++|++||+.............+|...|.+++|+|     .+++++       |+.......
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence            99999999999999999999999999876543221234568999999999998     477776       888766532


Q ss_pred             ceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288          367 PSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKL  445 (513)
Q Consensus       367 ~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v  445 (513)
                        ..+. |...+.++ .++|++++|++|+.||.|++||++  ....+..+..+ ..+..  ++|+|++.+|++++ |+.|
T Consensus       555 --~~~~~h~~~v~~v-~~spdg~~l~sg~~Dg~i~iwd~~--~~~~~~~~~~~-~~v~~--~~~sp~~~~l~~~~-~~~i  625 (694)
T 3dm0_A          555 --STLAGHTGYVSTV-AVSPDGSLCASGGKDGVVLLWDLA--EGKKLYSLEAN-SVIHA--LCFSPNRYWLCAAT-EHGI  625 (694)
T ss_dssp             --EEECCCSSCEEEE-EECTTSSEEEEEETTSBCEEEETT--TTEEEECCBCS-SCEEE--EEECSSSSEEEEEE-TTEE
T ss_pred             --EEEcCCCCCEEEE-EEeCCCCEEEEEeCCCeEEEEECC--CCceEEEecCC-CcEEE--EEEcCCCcEEEEEc-CCCE
Confidence              3333 45566665 889999999999999999999997  44566666543 45555  89999998887766 5669


Q ss_pred             EEEeCCCCeEEEEecCCC-------------------CCeEEEEEcCCCceEEeeCCCee
Q 037288          446 RIWSIRSGELVFEDKFSN-------------------SVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       446 ~vwd~~~~~~~~~~~~~~-------------------~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      +|||+.+++++..+..+.                   ..+++++|+|++.++++++.|-.
T Consensus       626 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            999999999888765321                   13788999999888888776643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=8.8e-26  Score=258.73  Aligned_cols=181  Identities=13%  Similarity=0.215  Sum_probs=153.7

Q ss_pred             eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE-------eecccCcc
Q 037288          295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANI  365 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~  365 (513)
                      |...|.+++|+|++++|++|+.||.|++||+.++..    ..+..|...|.++.|++  .+++++       |+...+..
T Consensus      1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A         1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY----VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp             CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE----ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce----EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce
Confidence            677899999999999999999999999999998764    35678999999999999  777776       88887764


Q ss_pred             cceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          366 WPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       366 ~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                      .  ..+. +...+.++ .++|++++|++++.||.|++||+.  ...++..+.+|...|++  ++|+|+|++|++|+.||.
T Consensus      1078 ~--~~~~~~~~~v~~~-~~s~d~~~l~s~s~d~~v~iwd~~--~~~~~~~l~~h~~~v~~--~~~s~dg~~lat~~~dg~ 1150 (1249)
T 3sfz_A         1078 E--RDFTCHQGTVLSC-AISSDATKFSSTSADKTAKIWSFD--LLSPLHELKGHNGCVRC--SAFSLDGILLATGDDNGE 1150 (1249)
T ss_dssp             C--EEEECCSSCCCCE-EECSSSSSCEEECCSSCCCEECSS--SSSCSBCCCCCSSCEEE--EEECSSSSEEEEEETTSC
T ss_pred             e--EEEcccCCcEEEE-EECCCCCEEEEEcCCCcEEEEECC--CcceeeeeccCCCcEEE--EEECCCCCEEEEEeCCCE
Confidence            3  2333 45566665 789999999999999999999997  55588889999999877  899999999999999999


Q ss_pred             EEEEeCCCCeEEEEe---------cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          445 LRIWSIRSGELVFED---------KFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       445 v~vwd~~~~~~~~~~---------~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |++||+.+++++..+         ..|.+.|++++|+|++.+++++++.+.
T Consensus      1151 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~ 1201 (1249)
T 3sfz_A         1151 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLK 1201 (1249)
T ss_dssp             CCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEE
T ss_pred             EEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEE
Confidence            999999999877665         567889999999999988888876555

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=2.3e-25  Score=217.45  Aligned_cols=233  Identities=12%  Similarity=0.074  Sum_probs=187.1

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCc----EEEEe-eeCCCeEEEEEec--CCcEEEEEeCCCeEEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGM----ASWVC-RSKSDILAQQVIH--SGNVVLCGFRNGAIVT  322 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~----~~~~~-~~~~~V~~l~~~~--~~~~l~sg~~dg~i~i  322 (513)
                      .+.+|.+.|.+++|+|++++|++|+. +.|++||+.++.    ....+ .|...|.+++|+|  ++++|++|+.||.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            37899999999999999999998875 569999998763    33333 4888899999999  6999999999999999


Q ss_pred             EECCCCccc------cccccccccCcCeEEEeeCC-----eEEEeE-------eecccCcccceeEe------------e
Q 037288          323 VDVRKRQRG------CSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIWPSHTT------------F  372 (513)
Q Consensus       323 wd~~~~~~~------~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~~~~~~------------~  372 (513)
                      ||++.+...      ..+..+.+|...|.+++|+|     .+++++       |+...+........            .
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999876421      11457789999999999997     477766       99877664432221            2


Q ss_pred             cCCCceEEEEEcCC---CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC----CEEEEEeCCCcE
Q 037288          373 MPSSISCLQSLQLY---DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE----RFVMSGGEDCKL  445 (513)
Q Consensus       373 ~~~~v~~~~~~~~~---~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g----~~l~sg~~Dg~v  445 (513)
                      +...+.++ .++|+   +.+|++++.|+.+.+|+........+..+.+|...+..  ++|+|++    ++|++|+.||.|
T Consensus       166 ~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~--~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          166 HLQSDFCL-SWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRS--ISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             CSCCCEEE-EECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEE--EEECCCSSCSSEEEEEEETTSCE
T ss_pred             cccceeEE-EeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeE--EEECCCCCCcceEEEEEcCCCeE
Confidence            34456665 67776   89999999999998887752222257788899999877  8999998    899999999999


Q ss_pred             EEEeCCCC----------------------------------------------eEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          446 RIWSIRSG----------------------------------------------ELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       446 ~vwd~~~~----------------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                      ++||+.++                                              +++..+..|...|++++|+|++.+++
T Consensus       243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS  322 (351)
T ss_dssp             EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred             EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence            99999875                                              67777888999999999999988888


Q ss_pred             eeCCCee
Q 037288          480 QIEGKIH  486 (513)
Q Consensus       480 t~~~~~~  486 (513)
                      +++.|-.
T Consensus       323 s~~~dg~  329 (351)
T 3f3f_A          323 SAGDDGK  329 (351)
T ss_dssp             EEETTSC
T ss_pred             EecCCCc
Confidence            8876644

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.9e-25  Score=224.42  Aligned_cols=216  Identities=11%  Similarity=0.123  Sum_probs=167.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCC-CcEEEEe-eeCCC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMET-GMASWVC-RSKSD  298 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~-~~~~~~~-~~~~~  298 (513)
                      .+|.+.+|++.+..            .+..+.+|...|.+++|  ++.++++|+. +.|++||+.. +.....+ .|...
T Consensus       154 ~dg~i~iwd~~~~~------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  219 (401)
T 4aez_A          154 GNGLVDIYDVESQT------------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE  219 (401)
T ss_dssp             TTSCEEEEETTTCC------------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             CCCeEEEEECcCCe------------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCC
Confidence            46788888876432            35668899999999999  5678888765 5599999984 4444444 48888


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE---------eecccCcc
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ---------WFELKANI  365 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~---------w~~~~~~~  365 (513)
                      |.+++|+|++++|++|+.|+.|++||+++...   +..+..|...|.+++|+|    .+++++         |+...+..
T Consensus       220 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIP---KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCSSE---EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc---cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence            99999999999999999999999999998765   447889999999999998    344431         88877653


Q ss_pred             cceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC
Q 037288          366 WPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC  443 (513)
Q Consensus       366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg  443 (513)
                        ...+.+...+.++ .+++++++|++++  .||.|++||+..........+.+|...+..  ++|+|+|++|++++.||
T Consensus       297 --~~~~~~~~~v~~~-~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~--~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          297 --VNTVDAGSQVTSL-IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY--SALSPDGRILSTAASDE  371 (401)
T ss_dssp             --EEEEECSSCEEEE-EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE--EEECTTSSEEEEECTTS
T ss_pred             --EEEEeCCCcEEEE-EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE--EEECCCCCEEEEEeCCC
Confidence              3455666777775 7889999999954  899999999972212245567899999877  89999999999999999


Q ss_pred             cEEEEeCCCCeEEEEe
Q 037288          444 KLRIWSIRSGELVFED  459 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~  459 (513)
                      .|++|++.+++.+...
T Consensus       372 ~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          372 NLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEEEECCC-------
T ss_pred             cEEEEECCCCcccccc
Confidence            9999999999887764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=1.4e-25  Score=222.04  Aligned_cols=216  Identities=12%  Similarity=0.017  Sum_probs=164.5

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcE---EEEe--ee
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMA---SWVC--RS  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~---~~~~--~~  295 (513)
                      .+|.+.+|++.+....          ....+..|...|.+++|+|+++++++++. +.|++||+.++..   ...+  .|
T Consensus        72 ~dg~i~vwd~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~  141 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWK----------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  141 (372)
T ss_dssp             TTSCEEEEEEETTEEE----------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCeEEEEECCCCeee----------eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc
Confidence            4678888887533211          23345789999999999999999998865 5599999988762   2222  26


Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc---------------cccccccccCcCeEEEeeCCeEEEeEeec
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG---------------CSSRAGRRHRIPYSRLQRNDRVTNEQWFE  360 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~---------------~~~~~~~~h~~~v~~v~~~~~~~s~~w~~  360 (513)
                      ...|.+++|+|++++|++|+.||.|++||++.....               ..+..+.+|...|.+              
T Consensus       142 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------------  207 (372)
T 1k8k_C          142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG--------------  207 (372)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE--------------
T ss_pred             CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE--------------
Confidence            788999999999999999999999999997632110               002344455555555              


Q ss_pred             ccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe
Q 037288          361 LKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG  440 (513)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~  440 (513)
                                          +.++|++++|++++.|+.|++||++  ...++..+..|...+..  ++|+|++.+|++| 
T Consensus       208 --------------------~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~-  262 (372)
T 1k8k_C          208 --------------------VCFSANGSRVAWVSHDSTVCLADAD--KKMAVATLASETLPLLA--VTFITESSLVAAG-  262 (372)
T ss_dssp             --------------------EEECSSSSEEEEEETTTEEEEEEGG--GTTEEEEEECSSCCEEE--EEEEETTEEEEEE-
T ss_pred             --------------------EEECCCCCEEEEEeCCCEEEEEECC--CCceeEEEccCCCCeEE--EEEecCCCEEEEE-
Confidence                                3566799999999999999999997  55688899999888877  8899999988877 


Q ss_pred             CCCcEEEEeCCC--CeEE--------------------------------------EEe-cCCCCCeEEEEEc-CCC---
Q 037288          441 EDCKLRIWSIRS--GELV--------------------------------------FED-KFSNSVPSAVCWR-TQR---  475 (513)
Q Consensus       441 ~Dg~v~vwd~~~--~~~~--------------------------------------~~~-~~~~~~v~~v~~~-p~~---  475 (513)
                      .|+.|++|++.+  ++..                                      ..+ ..|..+|++++|. +++   
T Consensus       263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~  342 (372)
T 1k8k_C          263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC  342 (372)
T ss_dssp             TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred             eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence            899999999988  5310                                      222 4788999999977 555   


Q ss_pred             ceEEeeCCCee
Q 037288          476 SMGPQIEGKIH  486 (513)
Q Consensus       476 ~~~~t~~~~~~  486 (513)
                      .+++|++.|-.
T Consensus       343 ~~l~s~~~Dg~  353 (372)
T 1k8k_C          343 SQFCTTGMDGG  353 (372)
T ss_dssp             SEEEEEETTSE
T ss_pred             eeEEEecCCCc
Confidence            78888887744

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.9e-25  Score=221.79  Aligned_cols=219  Identities=13%  Similarity=0.073  Sum_probs=179.9

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      +|...|.+++|+|++.+|++|+. +.|++|| .++.....+. |...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            47889999999999999998865 4599999 4555555555 7888999999999999999999999999999888753


Q ss_pred             cccccccccCcC---------------eEEEeeCC--eEEEeE-------eecccCcccceeEe-ecCCCceEEEEEcCC
Q 037288          332 CSSRAGRRHRIP---------------YSRLQRND--RVTNEQ-------WFELKANIWPSHTT-FMPSSISCLQSLQLY  386 (513)
Q Consensus       332 ~~~~~~~~h~~~---------------v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  386 (513)
                         ..+..+...               +.++.|++  .+++++       |+...+...  ..+ .+...+.++ .++|+
T Consensus       185 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~~~i~~~-~~~~~  258 (425)
T 1r5m_A          185 ---QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT--GKLIGHHGPISVL-EFNDT  258 (425)
T ss_dssp             ---EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS--EEECCCSSCEEEE-EEETT
T ss_pred             ---EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee--eeeccCCCceEEE-EECCC
Confidence               356666655               88888888  666665       887766533  233 345566665 78889


Q ss_pred             CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP  466 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v  466 (513)
                      +++|++++.|+.|++||++  ....+..+.+|...+..  ++|+|++ +|++++.||.|++||+.+++++..+..|...|
T Consensus       259 ~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~--~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i  333 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGG--NGNSQNCFYGHSQSIVS--ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI  333 (425)
T ss_dssp             TTEEEEEETTSCEEEECSS--SBSCSEEECCCSSCEEE--EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECC--CCccceEecCCCccEEE--EEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence            9999999999999999997  55688889999998877  8899999 99999999999999999999999999999999


Q ss_pred             EEEEEcCCCceEEeeCCC
Q 037288          467 SAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       467 ~~v~~~p~~~~~~t~~~~  484 (513)
                      .+++|+|++.++++++.+
T Consensus       334 ~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             EEEEECTTSSEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECC
Confidence            999999998777777655

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=3.7e-25  Score=220.54  Aligned_cols=242  Identities=11%  Similarity=0.079  Sum_probs=185.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEeee---C
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVCRS---K  296 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~---~  296 (513)
                      .+|.+.+|++.+....          ......+|...|.+++|+| ++.+|++++ |+.|++||+.+........+   .
T Consensus        94 ~dg~i~iwd~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  163 (383)
T 3ei3_B           94 KGGDIILWDYDVQNKT----------SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWD  163 (383)
T ss_dssp             BTSCEEEEETTSTTCE----------EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSS
T ss_pred             CCCeEEEEeCCCcccc----------eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCC
Confidence            4788888988744322          1222357999999999999 778888886 45699999997554444333   3


Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcc
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANI  365 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~  365 (513)
                      ..|.+++|+|++++|++|+.|+.|++||++ ++.   +..+.+|...|.+++|+|    .+++++       |+......
T Consensus       164 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          164 YWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE---IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD  239 (383)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE---EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred             CCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE---EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence            679999999999999999999999999995 333   558889999999999999    366666       99887442


Q ss_pred             --cceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEEecCCC-------Cce--------eEEEE
Q 037288          366 --WPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHV-------NSH--------TRIQL  427 (513)
Q Consensus       366 --~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~-------~~v--------~~~~~  427 (513)
                        .....+.+...+.++ .|+| ++++|++++.|+.|++||++  ....+..+.+|.       ..+        ..+.+
T Consensus       240 ~~~~~~~~~~~~~v~~~-~~s~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  316 (383)
T 3ei3_B          240 KNSYIAEMPHEKPVNAA-YFNPTDSTKLLTTDQRNEIRVYSSY--DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA  316 (383)
T ss_dssp             TTCEEEEEECSSCEEEE-EECTTTSCEEEEEESSSEEEEEETT--BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred             ccceEEEecCCCceEEE-EEcCCCCCEEEEEcCCCcEEEEECC--CCccccccccccccccccccceEEeccCCCCceEE
Confidence              233445677777776 7888 99999999999999999997  444555555443       221        12235


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC--CCCCeEEEEEcCCCceEEeeC
Q 037288          428 GVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF--SNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       428 ~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      +|+|++++  +|+.||.|++||+.+++++..+..  +...+..++|+|++.++++++
T Consensus       317 ~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          317 GRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             ECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             EecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence            66677766  778999999999999999999876  457788889999988888875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=9.7e-25  Score=210.43  Aligned_cols=206  Identities=18%  Similarity=0.192  Sum_probs=163.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .+|.+.+|++......         ..+..+.+|...|.+++|  ++.++++++ ++.|++||  .+.....+. |...|
T Consensus        79 ~dg~i~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v  145 (313)
T 3odt_A           79 KDTMINGVPLFATSGE---------DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASV  145 (313)
T ss_dssp             TTSCEEEEETTCCTTS---------CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCE
T ss_pred             CCCeEEEEEeeecCCC---------CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCce
Confidence            4778888887754322         124557899999999999  567888776 55699999  455554444 78889


Q ss_pred             EEEEEec-CCcEEEEEeCCCeEEEEECCCCccccccccccc-cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288          300 LAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRR-HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI  377 (513)
Q Consensus       300 ~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v  377 (513)
                      .+++|+| +++.+++++.||.|++||....     ...+.. |...+.++                              
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~i~~~------------------------------  190 (313)
T 3odt_A          146 WDAKVVSFSENKFLTASADKTIKLWQNDKV-----IKTFSGIHNDVVRHL------------------------------  190 (313)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTEE-----EEEECSSCSSCEEEE------------------------------
T ss_pred             eEEEEccCCCCEEEEEECCCCEEEEecCce-----EEEEeccCcccEEEE------------------------------
Confidence            9999998 8999999999999999994322     224444 56666653                              


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                          .+++++. |++++.||.|++||++  ....+..+.+|...+..  ++|+|++ .|++++.||.|++||+.+++++.
T Consensus       191 ----~~~~~~~-~~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~--~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~  260 (313)
T 3odt_A          191 ----AVVDDGH-FISCSNDGLIKLVDMH--TGDVLRTYEGHESFVYC--IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ  260 (313)
T ss_dssp             ----EEEETTE-EEEEETTSEEEEEETT--TCCEEEEEECCSSCEEE--EEECTTS-CEEEEETTSEEEEECTTTCCEEE
T ss_pred             ----EEcCCCe-EEEccCCCeEEEEECC--chhhhhhhhcCCceEEE--EEEecCC-CEEEEecCCEEEEEECCCCceeE
Confidence                4556777 8999999999999997  55688899999999877  8999999 58999999999999999999999


Q ss_pred             EecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          458 EDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       458 ~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      .+..|...|.+++|+|++.+++++..+.
T Consensus       261 ~~~~~~~~i~~~~~~~~~~~~~~~~dg~  288 (313)
T 3odt_A          261 VITLPAISIWSVDCMSNGDIIVGSSDNL  288 (313)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEETTSC
T ss_pred             EEeccCceEEEEEEccCCCEEEEeCCCc
Confidence            9999999999999999977666554443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=9.8e-26  Score=221.70  Aligned_cols=243  Identities=13%  Similarity=0.135  Sum_probs=187.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC---CCEEEEEe-CCeEEEEECCCCc-EEEEee-e
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN---PSQAVIGT-NLGAAMVDMETGM-ASWVCR-S  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~---g~~l~s~s-~~~i~vwd~~~~~-~~~~~~-~  295 (513)
                      .+|.+.+|++.+....           .....+|...|.+++|+|+   +.+|++|+ ++.|++||+.+++ ....+. |
T Consensus        42 ~d~~v~iw~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  110 (357)
T 3i2n_A           42 GTGVIQLYEIQHGDLK-----------LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH  110 (357)
T ss_dssp             CCEEEEEEEECSSSEE-----------EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             CCcEEEEEeCCCCccc-----------ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec
Confidence            3788888888743321           1224479999999999998   68888886 5569999999887 555554 8


Q ss_pred             CCCeEEEEE------ecCCcEEEEEeCCCeEEEEECCCCccccccccccccC----cCeEEEe----eCC---eEEEeE-
Q 037288          296 KSDILAQQV------IHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHR----IPYSRLQ----RND---RVTNEQ-  357 (513)
Q Consensus       296 ~~~V~~l~~------~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~----~~v~~v~----~~~---~~~s~~-  357 (513)
                      ...|.+++|      +|++++|++|+.||.|++||++.....  +..+..|.    ..+.++.    |++   .+++++ 
T Consensus       111 ~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~  188 (357)
T 3i2n_A          111 KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP--VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD  188 (357)
T ss_dssp             SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC--SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET
T ss_pred             ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc--ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc
Confidence            888999965      678999999999999999999987621  33444443    3889988    555   566665 


Q ss_pred             ------eecccCcccceeEeecCCCceEEEEEcC---CCCEEEEEecCCeEEEEecCCCCccceEEe-----cCCCCcee
Q 037288          358 ------WFELKANIWPSHTTFMPSSISCLQSLQL---YDQYFLASSMDGTVKLYDHRLTTRGAVQSY-----EGHVNSHT  423 (513)
Q Consensus       358 ------w~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-----~~h~~~v~  423 (513)
                            |+...+..  .....+...+.++ .++|   ++.+|++++.||.|++||++  ...++..+     .+|...+.
T Consensus       189 d~~i~i~d~~~~~~--~~~~~~~~~v~~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~  263 (357)
T 3i2n_A          189 NGDIKLFDLRNMAL--RWETNIKNGVCSL-EFDRKDISMNKLVATSLEGKFHVFDMR--TQHPTKGFASVSEKAHKSTVW  263 (357)
T ss_dssp             TSEEEEEETTTTEE--EEEEECSSCEEEE-EESCSSSSCCEEEEEESTTEEEEEEEE--EEETTTEEEEEEEECCSSCEE
T ss_pred             CCeEEEEECccCce--eeecCCCCceEEE-EcCCCCCCCCEEEEECCCCeEEEEeCc--CCCcccceeeeccCCCcCCEE
Confidence                  88887764  3345566677775 7888   89999999999999999997  33344333     48999887


Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-------------------eEEEEecCCCCCeEEEEEcCCCceEE-eeC
Q 037288          424 RIQLGVDQSER-FVMSGGEDCKLRIWSIRSG-------------------ELVFEDKFSNSVPSAVCWRTQRSMGP-QIE  482 (513)
Q Consensus       424 ~~~~~~s~~g~-~l~sg~~Dg~v~vwd~~~~-------------------~~~~~~~~~~~~v~~v~~~p~~~~~~-t~~  482 (513)
                      .  ++|+|+++ +|++|+.||.|++||+.++                   +++..+..|..+|++++|+|++.+++ +++
T Consensus       264 ~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~  341 (357)
T 3i2n_A          264 Q--VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS  341 (357)
T ss_dssp             E--EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred             E--EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence            7  88999998 8999999999999999854                   46777888999999999999976665 565


Q ss_pred             CC
Q 037288          483 GK  484 (513)
Q Consensus       483 ~~  484 (513)
                      .|
T Consensus       342 ~d  343 (357)
T 3i2n_A          342 FD  343 (357)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=1.4e-24  Score=211.41  Aligned_cols=226  Identities=10%  Similarity=0.057  Sum_probs=183.7

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcE---EEEe---eeCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMA---SWVC---RSKSDILAQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~---~~~~---~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      ....+|...|.+++|+|+++++++++++.|++||+.++..   ...+   .|...|.+++|+|++++|++|+.||.|++|
T Consensus        45 ~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             ceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3455899999999999999999999988899999987642   2222   477889999999999999999999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLA  392 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s  392 (513)
                      |++.++... ...+..|...|.+++|+|   .+++++       |+...++.  ...+. +...+.++ .++|++++|++
T Consensus       125 d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~~~~~i~~~-~~~~~~~~l~~  200 (337)
T 1gxr_A          125 DLAAPTPRI-KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--VRQFQGHTDGASCI-DISNDGTKLWT  200 (337)
T ss_dssp             ECCCC--EE-EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEE-EECTTSSEEEE
T ss_pred             ECCCCCcce-eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeeecccCceEEE-EECCCCCEEEE
Confidence            999887433 557888999999999998   566665       88876653  23333 45566665 78899999999


Q ss_pred             EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          393 SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       393 ~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      ++.||.|++||++  ....+..+. |...+..  ++|+|++++|++++.|+.|++||+.+++.. .+..|...|.+++|+
T Consensus       201 ~~~dg~i~~~d~~--~~~~~~~~~-~~~~v~~--~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~  274 (337)
T 1gxr_A          201 GGLDNTVRSWDLR--EGRQLQQHD-FTSQIFS--LGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA  274 (337)
T ss_dssp             EETTSEEEEEETT--TTEEEEEEE-CSSCEEE--EEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC
T ss_pred             EecCCcEEEEECC--CCceEeeec-CCCceEE--EEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEEC
Confidence            9999999999997  444565554 6666666  899999999999999999999999998865 566788899999999


Q ss_pred             CCCceEEeeCCCe
Q 037288          473 TQRSMGPQIEGKI  485 (513)
Q Consensus       473 p~~~~~~t~~~~~  485 (513)
                      |++.++++++.+-
T Consensus       275 ~~~~~l~~~~~dg  287 (337)
T 1gxr_A          275 YCGKWFVSTGKDN  287 (337)
T ss_dssp             TTSSEEEEEETTS
T ss_pred             CCCCEEEEecCCC
Confidence            9987777776553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=1.1e-24  Score=221.76  Aligned_cols=235  Identities=20%  Similarity=0.256  Sum_probs=189.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~  298 (513)
                      ..+|.+.+|++.+.            ..+..+.+|...|.+++|+  +..+++|+ |+.|++||+.+++.+..+. |...
T Consensus       176 ~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~  241 (445)
T 2ovr_B          176 STDRTLKVWNAETG------------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA  241 (445)
T ss_dssp             ETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             eCCCeEEEEECCcC------------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence            35788888887643            2356688999999999995  56677775 5569999999998877665 7788


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeE
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHT  370 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~  370 (513)
                      |.+++|  +++.|++|+.||.|++||+++++.   +..+.+|...|.+++|.. .+++++       |+...++..  ..
T Consensus       242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~  314 (445)
T 2ovr_B          242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETC---LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI--HT  314 (445)
T ss_dssp             EEEEEE--CSSCEEEEETTSCEEEEEGGGTEE---EEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE--EE
T ss_pred             EEEEEE--CCCEEEEEcCCCEEEEEECCCCcE---eEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE--EE
Confidence            999999  789999999999999999998775   457889999999999977 777776       888776643  23


Q ss_pred             ee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC---CCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          371 TF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG---HVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       371 ~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~---h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                      +. +...+.++   .+++++|++|+.||.|++||++  ...++..+.+   |...+.+  ++|+  +++|++|+.||.|+
T Consensus       315 ~~~~~~~v~~~---~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~--~~~~--~~~l~s~~~dg~v~  385 (445)
T 2ovr_B          315 LTGHQSLTSGM---ELKDNILVSGNADSTVKIWDIK--TGQCLQTLQGPNKHQSAVTC--LQFN--KNFVITSSDDGTVK  385 (445)
T ss_dssp             ECCCCSCEEEE---EEETTEEEEEETTSCEEEEETT--TCCEEEEECSTTSCSSCEEE--EEEC--SSEEEEEETTSEEE
T ss_pred             EcCCcccEEEE---EEeCCEEEEEeCCCeEEEEECC--CCcEEEEEccCCCCCCCEEE--EEEC--CCEEEEEeCCCeEE
Confidence            33 33344443   3368899999999999999997  5557888876   7777766  6664  78999999999999


Q ss_pred             EEeCCCCeEEEEe-----cCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          447 IWSIRSGELVFED-----KFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       447 vwd~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +||+.+++.+..+     ..+.+.|++++|+|++.++++++.|-
T Consensus       386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             EEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence            9999999999887     46778899999999998888877764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=1.9e-25  Score=214.88  Aligned_cols=185  Identities=10%  Similarity=0.074  Sum_probs=142.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC--CCEEEEEeC-CeEEEEECCCCc---EEEEee
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN--PSQAVIGTN-LGAAMVDMETGM---ASWVCR  294 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--g~~l~s~s~-~~i~vwd~~~~~---~~~~~~  294 (513)
                      ..+|.+.+|++.+...          ..+..+.+|...|.+++|+|+  +.+|++|+. +.|++||+.++.   ......
T Consensus        74 s~D~~v~iWd~~~~~~----------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  143 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRW----------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA  143 (297)
T ss_dssp             ETTTEEEEEEBSSSCB----------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred             cCCCEEEEEEcCCCce----------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec
Confidence            3578899998864321          124557889999999999997  888988865 559999998763   233445


Q ss_pred             eCCCeEEEEEecC-------------CcEEEEEeCCCeEEEEECCCCcccc-ccccccccCcCeEEEeeCCeEEEeEeec
Q 037288          295 SKSDILAQQVIHS-------------GNVVLCGFRNGAIVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRNDRVTNEQWFE  360 (513)
Q Consensus       295 ~~~~V~~l~~~~~-------------~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~s~~w~~  360 (513)
                      |...|.+++|+|+             +++|++|+.|++|++||++...... ....+.+|...|.+++|+          
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s----------  213 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS----------  213 (297)
T ss_dssp             CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC----------
T ss_pred             ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC----------
Confidence            8888999999997             5799999999999999998765211 134678899988886664          


Q ss_pred             ccCcccceeEeecCCCceEEEEEcCC---CCEEEEEecCCeEEEEecCCCCcc-ceEEe--cCCCCceeEEEEEEcCCCC
Q 037288          361 LKANIWPSHTTFMPSSISCLQSLQLY---DQYFLASSMDGTVKLYDHRLTTRG-AVQSY--EGHVNSHTRIQLGVDQSER  434 (513)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~--~~h~~~v~~~~~~~s~~g~  434 (513)
                                              |+   +.+|++++.|++|++||++..... ....+  .+|...+..  ++|+|+|+
T Consensus       214 ------------------------p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~  267 (297)
T 2pm7_B          214 ------------------------PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR--ASWSLSGN  267 (297)
T ss_dssp             ------------------------CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE--EEECSSSC
T ss_pred             ------------------------CCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEE--EEECCCCC
Confidence                                    45   489999999999999999732111 12233  467777765  89999999


Q ss_pred             EEEEEeCCCcEEEEeCC
Q 037288          435 FVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       435 ~l~sg~~Dg~v~vwd~~  451 (513)
                      +|++++.||.|+||+..
T Consensus       268 ~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          268 VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEETTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEC
Confidence            99999999999999976

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.8e-26  Score=237.03  Aligned_cols=214  Identities=15%  Similarity=0.025  Sum_probs=155.6

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc-EEE-EeeeCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM-ASW-VCRSKS  297 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~-~~~-~~~~~~  297 (513)
                      ..+|.+.+|++........ ...........+.+|...|.+++|++++ .|++|+ |++|++||+.++. +.. ...|..
T Consensus       232 s~DgtvrlWd~~~~~~~~~-~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~  309 (524)
T 2j04_B          232 SQEGTINFLEIIDNATDVH-VFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS  309 (524)
T ss_dssp             ETTSCEEEEECCCCSSSSS-EEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSS
T ss_pred             ecCCeEEEEEcCCCccccc-cceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccc
Confidence            3578999999875432100 0001112245688999999999999865 677775 5669999999764 333 345888


Q ss_pred             CeEEE--EEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCc--CeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288          298 DILAQ--QVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI--PYSRLQRNDRVTNEQWFELKANIWPSHTTF  372 (513)
Q Consensus       298 ~V~~l--~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~  372 (513)
                      .|.+|  +|++++ ++|++|+.|++|++||+++.+...   .+.+|..  .|.+                          
T Consensus       310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~---~~~~~~~~~~v~~--------------------------  360 (524)
T 2j04_B          310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK---TTVSRFRGSNLVP--------------------------  360 (524)
T ss_dssp             CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC---EEEEECSCCSCCC--------------------------
T ss_pred             cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc---ccccccccCcccc--------------------------
Confidence            99999  577888 899999999999999998766422   3334421  2333                          


Q ss_pred             cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                              +.|+|+++.|++++.|++|++||++  ...++.++.+|.+.|..  ++|+|+|++|++|+.||+|++||+..
T Consensus       361 --------v~fsp~~~~l~s~~~d~tv~lwd~~--~~~~~~~l~gH~~~V~s--va~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          361 --------VVYCPQIYSYIYSDGASSLRAVPSR--AAFAVHPLVSRETTITA--IGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             --------EEEETTTTEEEEECSSSEEEEEETT--CTTCCEEEEECSSCEEE--EECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             --------eEeCCCcCeEEEeCCCCcEEEEECc--ccccceeeecCCCceEE--EEeCCCCCeEEEEECCCEEEEEechH
Confidence                    3677899999999999999999998  55577888899999877  89999999999999999999999865


Q ss_pred             CeEEEEec-----CCCCCeEEEEEcCCCceE
Q 037288          453 GELVFEDK-----FSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       453 ~~~~~~~~-----~~~~~v~~v~~~p~~~~~  478 (513)
                      + .+...+     .+...+..++|+|++.++
T Consensus       429 ~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          429 R-LLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             S-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             h-hccccccCccceeeeEEEEeccCCCCCeE
Confidence            4 221111     111236678888876544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=7.4e-25  Score=240.00  Aligned_cols=243  Identities=14%  Similarity=0.133  Sum_probs=201.5

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .+|.+.+|++.+..            .+..+.+|...|.+++|+|++++|++|++ +.|++||+.+++.+..+. |...|
T Consensus        33 ~~g~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v  100 (814)
T 3mkq_A           33 YSGRVEIWNYETQV------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI  100 (814)
T ss_dssp             TTSEEEEEETTTTE------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCCEEEEEECCCCc------------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCE
Confidence            46788888876422            34568899999999999999999998865 559999999999877766 88889


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccce
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPS  368 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~  368 (513)
                      .+++|+|++..|++|+.||.|++||+..+...  ...+.+|..+|.+++|+|    .+++++       |+...+.....
T Consensus       101 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~  178 (814)
T 3mkq_A          101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT  178 (814)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEEGGGTSEE--EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE
T ss_pred             EEEEEeCCCCEEEEEcCCCEEEEEECCCCceE--EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE
Confidence            99999999999999999999999999876321  457889999999999987    566665       88876654433


Q ss_pred             eEeecCCCceEEEEEcC--CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          369 HTTFMPSSISCLQSLQL--YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       369 ~~~~~~~~v~~~~~~~~--~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                      ....+...+.++ .++|  ++.+|++++.||.|++||++  ....+..+.+|...+..  ++|+|++++|++|+.||.|+
T Consensus       179 ~~~~~~~~v~~~-~~~~~~~~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~v~  253 (814)
T 3mkq_A          179 LTTGQERGVNYV-DYYPLPDKPYMITASDDLTIKIWDYQ--TKSCVATLEGHMSNVSF--AVFHPTLPIIISGSEDGTLK  253 (814)
T ss_dssp             EECCCTTCCCEE-EECCSTTCCEEEEECTTSEEEEEETT--TTEEEEEEECCSSCEEE--EEECSSSSEEEEEETTSCEE
T ss_pred             EecCCCCCEEEE-EEEECCCCCEEEEEeCCCEEEEEECC--CCcEEEEEcCCCCCEEE--EEEcCCCCEEEEEeCCCeEE
Confidence            333333566665 6777  89999999999999999997  55588889999998877  88999999999999999999


Q ss_pred             EEeCCCCeEEEEecCCCCCeEEEEEcCCCc--eEEeeCC
Q 037288          447 IWSIRSGELVFEDKFSNSVPSAVCWRTQRS--MGPQIEG  483 (513)
Q Consensus       447 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~~t~~~  483 (513)
                      +||+.+++.+..+..+...+.+++|+|++.  +++++..
T Consensus       254 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  292 (814)
T 3mkq_A          254 IWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (814)
T ss_dssp             EEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred             EEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence            999999999999999999999999999964  3444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-26  Score=233.24  Aligned_cols=169  Identities=11%  Similarity=0.069  Sum_probs=138.1

Q ss_pred             ccCcEEEEE--EcCCCCEEEEEeC-CeEEEEECCCCcEEEEee---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          255 FKCTVWTAD--FCTNPSQAVIGTN-LGAAMVDMETGMASWVCR---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       255 h~~~V~~~~--~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +...+.++.  +++++.++++|+. +.|++||+.+++.+..+.   |...|.+++|+|++++|++|+.||.|++||++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence            566777777  5678999998865 559999999999877776   6788999999999999999999999999999987


Q ss_pred             cccccccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          329 QRGCSSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       329 ~~~~~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      +.   +..+. .|..+|.++.|+|                              .+++++.+|++|+.||.|++||++  
T Consensus       247 ~~---~~~~~~~~~~~v~~~~~~~------------------------------~~s~~~~~l~s~~~dg~i~iwd~~--  291 (437)
T 3gre_A          247 VL---IRSWSFGDHAPITHVEVCQ------------------------------FYGKNSVIVVGGSSKTFLTIWNFV--  291 (437)
T ss_dssp             EE---EEEEBCTTCEEEEEEEECT------------------------------TTCTTEEEEEEESTTEEEEEEETT--
T ss_pred             cE---EEEEecCCCCceEEEEecc------------------------------ccCCCccEEEEEcCCCcEEEEEcC--
Confidence            65   33544 6777888877754                              456788999999999999999997  


Q ss_pred             CccceEEecCC--------------------------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288          408 TRGAVQSYEGH--------------------------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       408 ~~~~~~~~~~h--------------------------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~  461 (513)
                      ...++..+.+|                          ...+.+  ++|+ ++++|++|+.||.|++||+.+++.+..+..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~--l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST--ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC--EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE--EEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            44466666544                          444555  7777 778999999999999999999988877765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=7.7e-25  Score=211.79  Aligned_cols=221  Identities=13%  Similarity=0.083  Sum_probs=171.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          259 VWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      +++++||+++ +||+|.|++|+|||+.+++++.++.   |...|++++|+|++++|++|+.||+|++||+++++.   +.
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~---~~  103 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR---LR  103 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---EE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee---EE
Confidence            5789999876 8899999999999999999877764   566799999999999999999999999999999876   45


Q ss_pred             cccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          336 AGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .+.+|...+.++.+.+ .+++++       |+.............+...+.. ..+.+++++|++++.|+.|++||++..
T Consensus       104 ~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG-LRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE-EEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             EecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEE-EEEcCCCCEEEEEecCcceeEEECCCC
Confidence            8899999999998888 566665       4444433222222233444444 578889999999999999999998742


Q ss_pred             Ccc--ceEEecC--------------------------------------------CCCceeEEEEEEcCCCCEEEEEe-
Q 037288          408 TRG--AVQSYEG--------------------------------------------HVNSHTRIQLGVDQSERFVMSGG-  440 (513)
Q Consensus       408 ~~~--~~~~~~~--------------------------------------------h~~~v~~~~~~~s~~g~~l~sg~-  440 (513)
                      +..  .......                                            +...+  ..+.|+|+++.+++++ 
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV--CSILWSPHYKELISGHG  260 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCE--EEEEEETTTTEEEEEEC
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeee--eeeeecccccceEEEEE
Confidence            111  1111111                                            11222  2367788888877654 


Q ss_pred             -CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          441 -EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       441 -~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                       .|+.|++||+.+++++.++.+|.+.|++++|+|++.+++|++.|-.
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~  307 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET  307 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence             7999999999999999999999999999999999988998887743

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.1e-26  Score=237.99  Aligned_cols=207  Identities=8%  Similarity=-0.035  Sum_probs=164.9

Q ss_pred             CCeEEEEECCCCcEE----EEee-eCCCeEEEEEecC------CcEEEEEeCCCeEEEEECCCCccc--------ccccc
Q 037288          276 NLGAAMVDMETGMAS----WVCR-SKSDILAQQVIHS------GNVVLCGFRNGAIVTVDVRKRQRG--------CSSRA  336 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~----~~~~-~~~~V~~l~~~~~------~~~l~sg~~dg~i~iwd~~~~~~~--------~~~~~  336 (513)
                      |++|+|||+.+++..    ..+. |.+.|.+++|+|+      +.+|++|+.||+|++||+......        .....
T Consensus       182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~  261 (524)
T 2j04_B          182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT  261 (524)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred             CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence            345999999877632    2233 5678999999997      579999999999999999866421        01236


Q ss_pred             ccccCcCeEEEeeCC--eEEEeE-------eecccCcccceeEeecCCCceEEE-EEcCCC-CEEEEEecCCeEEEEecC
Q 037288          337 GRRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQ-SLQLYD-QYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~l~s~s~dg~i~lwd~~  405 (513)
                      +.+|...|.+++|++  .+++|+       |++..+.........|...|.++. .+++++ ++|++|+.|++|+|||++
T Consensus       262 l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          262 LSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             ECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred             EEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence            788999999999988  778877       998876432222334677888884 678887 899999999999999997


Q ss_pred             CCCccceEEecCCCC--ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          406 LTTRGAVQSYEGHVN--SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                        ...++.++.+|..  .+..  ++|+|++..|++++.|++|++||++++.++..+..|.+.|++|+|+|++.++++++.
T Consensus       342 --~~~~~~~~~~~~~~~~v~~--v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          342 --DIATTKTTVSRFRGSNLVP--VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             --GHHHHCEEEEECSCCSCCC--EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred             --CCCcccccccccccCcccc--eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence              5556667777754  3444  899999999999999999999999999988888889999999999999887777776


Q ss_pred             Cee
Q 037288          484 KIH  486 (513)
Q Consensus       484 ~~~  486 (513)
                      |-.
T Consensus       418 Dgt  420 (524)
T 2j04_B          418 DGS  420 (524)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            644

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=1e-23  Score=205.86  Aligned_cols=247  Identities=11%  Similarity=0.099  Sum_probs=194.3

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~  298 (513)
                      ..+|.+.+|++.......       ......+.+|...|.+++|+|++++|++++. +.|++|+........... +...
T Consensus        58 s~D~~i~vWd~~~~~~~~-------~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~  130 (340)
T 4aow_A           58 SRDKTIIMWKLTRDETNY-------GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD  130 (340)
T ss_dssp             ETTSCEEEEEECCSSSCS-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             cCCCeEEEEECCCCCccc-------ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence            357889999987543321       1135668999999999999999999998865 459999999887666555 5667


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCccc
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIW  366 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~  366 (513)
                      +..+.++++++.|++|+.|+.+++||+......  ...+.+|...+..++|++     .+++++       |+...+...
T Consensus       131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~  208 (340)
T 4aow_A          131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY--TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK  208 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             eeEEEEeecCccceeecCCCeEEEEEeCCCceE--EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence            899999999999999999999999999866432  346788999999999987     455665       887766543


Q ss_pred             ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          367 PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       367 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                      . ....+...|.++ .++|++++|++|+.||.|++||++  ...++..+..+ ..+..  +.|+|++.+ ++++.|+.|+
T Consensus       209 ~-~~~~h~~~v~~~-~~s~~~~~l~s~s~Dg~i~iwd~~--~~~~~~~~~~~-~~v~~--~~~~~~~~~-~~~~~d~~i~  280 (340)
T 4aow_A          209 T-NHIGHTGYLNTV-TVSPDGSLCASGGKDGQAMLWDLN--EGKHLYTLDGG-DIINA--LCFSPNRYW-LCAATGPSIK  280 (340)
T ss_dssp             E-EECCCSSCEEEE-EECTTSSEEEEEETTCEEEEEETT--TTEEEEEEECS-SCEEE--EEECSSSSE-EEEEETTEEE
T ss_pred             e-EecCCCCcEEEE-EECCCCCEEEEEeCCCeEEEEEec--cCceeeeecCC-ceEEe--eecCCCCce-eeccCCCEEE
Confidence            1 122355667775 789999999999999999999997  55577777755 45555  888998865 5566799999


Q ss_pred             EEeCCCCeEEEEec---------CCCCCeEEEEEcCCCceEEeeCCC
Q 037288          447 IWSIRSGELVFEDK---------FSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       447 vwd~~~~~~~~~~~---------~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +||++++..+..+.         .|...|++++|+|++.++++++.|
T Consensus       281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            99999988777653         567889999999998888887766

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=1.7e-24  Score=248.07  Aligned_cols=330  Identities=12%  Similarity=0.122  Sum_probs=232.3

Q ss_pred             eeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccce
Q 037288          112 LNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVS  191 (513)
Q Consensus       112 ~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~  191 (513)
                      ...++|+|.    .+++|+.||.|++|++.+....     .           .-..+...+..+.|+|++..+...+.=.
T Consensus       620 ~~~~s~~~~----~l~s~~~d~~i~vw~~~~~~~~-----~-----------~~~~h~~~v~~~~~s~~~~~l~s~~~d~  679 (1249)
T 3sfz_A          620 HACFSQDGQ----RIASCGADKTLQVFKAETGEKL-----L-----------DIKAHEDEVLCCAFSSDDSYIATCSADK  679 (1249)
T ss_dssp             EEEECTTSS----EEEEEETTSCEEEEETTTCCEE-----E-----------EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEECCCCC----EEEEEeCCCeEEEEECCCCCEE-----E-----------EeccCCCCEEEEEEecCCCEEEEEeCCC
Confidence            345677764    6999999999999998544211     1           1112223355666666654433322211


Q ss_pred             EEEec---C-----------CCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccC
Q 037288          192 CIKLF---G-----------KHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKC  257 (513)
Q Consensus       192 si~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  257 (513)
                      .|.+.   .           ....+..+.|.....++   ..+..+|.+.+|++.+.            ..+..+.+|..
T Consensus       680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l---~sg~~d~~v~vwd~~~~------------~~~~~~~~h~~  744 (1249)
T 3sfz_A          680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL---ATGSNDFFLKLWDLNQK------------ECRNTMFGHTN  744 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEE---EEEETTSCEEEEETTSS------------SEEEEECCCSS
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEE---EEEeCCCeEEEEECCCc------------chhheecCCCC
Confidence            12211   1           11111112221111111   12345677877877643            24567889999


Q ss_pred             cEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEe-------------------------------------------
Q 037288          258 TVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVC-------------------------------------------  293 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~-------------------------------------------  293 (513)
                      .|.+++|+|++.++++++. +.|++||+.++.....+                                           
T Consensus       745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            9999999999999998865 56999998776533221                                           


Q ss_pred             -------------eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE
Q 037288          294 -------------RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ  357 (513)
Q Consensus       294 -------------~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~  357 (513)
                                   .|...|.+++|+|++.++++|+.||.|++||+.++..   +..+.+|...|.+++|+|   .+++++
T Consensus       825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~h~~~v~~v~~spdg~~l~s~s  901 (1249)
T 3sfz_A          825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK---VADCRGHLSWVHGVMFSPDGSSFLTAS  901 (1249)
T ss_dssp             ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce---eeecCCCccceEEEEECCCCCEEEEEe
Confidence                         3556789999999999999999999999999998875   458889999999999999   677776


Q ss_pred             -------eecccCccc------------------------------------ceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288          358 -------WFELKANIW------------------------------------PSHTTFMPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       358 -------w~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                             |+.......                                    ..........+.+ ..++|+++++++|+
T Consensus       902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~g~~l~~g~  980 (1249)
T 3sfz_A          902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC-CCLSPHLEYVAFGD  980 (1249)
T ss_dssp             TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE-EEECTTSSEEEEEE
T ss_pred             CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE-EEEcCCCCEEEEEc
Confidence                   775432100                                    0001112234444 58899999999999


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .||.|++||+.  ....+..+.+|...|..  ++|+|+|++|++++.||.|++||+.+++.+. +..|...|.+++|+|+
T Consensus       981 ~~g~i~i~d~~--~~~~~~~~~~h~~~v~~--l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~ 1055 (1249)
T 3sfz_A          981 EDGAIKIIELP--NNRVFSSGVGHKKAVRH--IQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQD 1055 (1249)
T ss_dssp             TTSCCEEEETT--TTSCEEECCCCSSCCCC--EEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSS
T ss_pred             CCCCEEEEEcC--CCceeeecccCCCceEE--EEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCC
Confidence            99999999997  55588889999999988  8999999999999999999999999998875 4577889999999999


Q ss_pred             CceEEeeCCCe
Q 037288          475 RSMGPQIEGKI  485 (513)
Q Consensus       475 ~~~~~t~~~~~  485 (513)
                      +.+++.+..+.
T Consensus      1056 ~~l~~~~~dg~ 1066 (1249)
T 3sfz_A         1056 SRLLSWSFDGT 1066 (1249)
T ss_dssp             SEEEEEESSSE
T ss_pred             CcEEEEECCCc
Confidence            87766665543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=9.6e-25  Score=220.07  Aligned_cols=244  Identities=14%  Similarity=0.141  Sum_probs=187.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEe-eeCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVC-RSKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~-~~~~~V  299 (513)
                      .+|.+.+|++.+.....            .+..| ..+....|++++++|++|+. +.|++||+.+++....+ .|...|
T Consensus        76 ~d~~v~i~d~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v  142 (420)
T 3vl1_A           76 LDGHDFLFNTIIRDGSK------------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEI  142 (420)
T ss_dssp             ETTEEEEEECCSEETTT------------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCE
T ss_pred             cCCcEEEEEecccceee------------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCcc
Confidence            36788888876443321            13334 45556678999999998865 55999999999888776 588899


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccccee
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSH  369 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~  369 (513)
                      .+++|+|++++|++|+.|+.|++||+++++.   +..+.+|...|.+++|+|   .+++++       |+...++.....
T Consensus       143 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  219 (420)
T 3vl1_A          143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF  219 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCC---CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCcC---ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence            9999999999999999999999999998876   447889999999999998   677776       888876543222


Q ss_pred             Ee--ecCCCceEEE--------------------EEcCCCCEEEEEecCCeEEEEecCCCCccceEEe-cCCCCceeEEE
Q 037288          370 TT--FMPSSISCLQ--------------------SLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY-EGHVNSHTRIQ  426 (513)
Q Consensus       370 ~~--~~~~~v~~~~--------------------~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~  426 (513)
                      ..  .+...+.++.                    .|+|++++|++|+.||.|++||++  ....+..+ .+|...+..  
T Consensus       220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~--  295 (420)
T 3vl1_A          220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF--SKEQTIQLPSKFTCSCNS--  295 (420)
T ss_dssp             CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT--TCCEEEEECCTTSSCEEE--
T ss_pred             ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC--CCceeEEcccccCCCcee--
Confidence            11  1233344433                    357899999999999999999997  44545444 457888776  


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEeCCCCeE-EEEecC-CCCCeEEEEEcCCCceEEeeCCCee
Q 037288          427 LGVDQSER-FVMSGGEDCKLRIWSIRSGEL-VFEDKF-SNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       427 ~~~s~~g~-~l~sg~~Dg~v~vwd~~~~~~-~~~~~~-~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ++|+|++. +|++|+.||.|++||+++++. +..+.. |..+++++.|+ ++.++++++.|-.
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~  357 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTS  357 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEE
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCcc
Confidence            89999998 999999999999999998753 566554 67788888776 5567777766644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.94  E-value=8.4e-25  Score=218.69  Aligned_cols=230  Identities=9%  Similarity=0.035  Sum_probs=187.4

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc-------EEEEeeeCCCeEEEEEecC----C---cEEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM-------ASWVCRSKSDILAQQVIHS----G---NVVLC  313 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~-------~~~~~~~~~~V~~l~~~~~----~---~~l~s  313 (513)
                      ...+.+|...|++++|+|  .+|++|+ |+.|++||+.+++       ......|...|.+++|+|+    +   ++|++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            355789999999999998  6777775 5569999999887       5555568889999999999    9   99999


Q ss_pred             EeCCCeEEEEECCCCcccc--cccccccc-----CcCeEEEeeC----C---e-EEEeE-------eeccc------Ccc
Q 037288          314 GFRNGAIVTVDVRKRQRGC--SSRAGRRH-----RIPYSRLQRN----D---R-VTNEQ-------WFELK------ANI  365 (513)
Q Consensus       314 g~~dg~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~v~~~----~---~-~~s~~-------w~~~~------~~~  365 (513)
                      |+.||.|++||+.......  .+..+..|     ...|.+++|+    |   . +++++       |+...      +..
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            9999999999998776410  02356677     6999999999    7   5 77776       88877      443


Q ss_pred             cc---eeEe--------ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC---C---CCceeEEEEE
Q 037288          366 WP---SHTT--------FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG---H---VNSHTRIQLG  428 (513)
Q Consensus       366 ~~---~~~~--------~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~---h---~~~v~~~~~~  428 (513)
                      ..   ...+        .+...+.++ .++|++ +|++++.||.|++||++  ...++..+..   |   ...+..  ++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~h~~~~~~i~~--i~  240 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSV-DISERG-LIATGFNNGTVQISELS--TLRPLYNFESQHSMINNSNSIRS--VK  240 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEE-EECTTS-EEEEECTTSEEEEEETT--TTEEEEEEECCC---CCCCCEEE--EE
T ss_pred             eeccCcceeeeeeccccCCCCCceEE-EECCCc-eEEEEeCCCcEEEEECC--CCceeEEEeccccccccCCccce--EE
Confidence            32   1122        245667775 788899 99999999999999997  5558888888   8   888876  89


Q ss_pred             EcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecC-------------CCCCeEEEEEcCCCceEEeeCCCee
Q 037288          429 VDQSERFVMSGGED---CKLRIWSIRSGELVFEDKF-------------SNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       429 ~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~-------------~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      |+|++++|++++.|   |.|++||+.+++++..+..             |...|.+++|+|++.++++++.+-.
T Consensus       241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  314 (397)
T 1sq9_A          241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  314 (397)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence            99999999999999   9999999999999999988             8999999999999888887776643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.94  E-value=2.7e-24  Score=220.00  Aligned_cols=223  Identities=13%  Similarity=0.208  Sum_probs=181.3

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .+.+|...|++++|++++ ++++|+ |++|++||+.+++.+..+. |...|.+++|++  ++++|++|+.||.|++||++
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            366899999999999988 666665 5669999999999887776 888899999994  77999999999999999998


Q ss_pred             CCccccc--------------------cccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEee-cCCCc
Q 037288          327 KRQRGCS--------------------SRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTF-MPSSI  377 (513)
Q Consensus       327 ~~~~~~~--------------------~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~-~~~~v  377 (513)
                      .......                    +..+.+|...|.++..+. .+++++       |+...+...  ..+. +...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~v  313 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL--YILSGHTDRI  313 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE--EEECCCSSCE
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEecCCCCCE
Confidence            7754320                    335778999999997776 677776       888766542  3333 45566


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      .++ .+++++++|++|+.||.|++||++  ...++.++.+|...+..  +.|+  +++|++|+.||.|++||+.+++...
T Consensus       314 ~~~-~~~~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~--~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          314 YST-IYDHERKRCISASMDTTIRIWDLE--NGELMYTLQGHTALVGL--LRLS--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             EEE-EEETTTTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEE--EEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEE-EEcCCCCEEEEEeCCCcEEEEECC--CCcEEEEEeCCCCcEEE--EEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence            665 788999999999999999999997  55688999999999877  6666  6899999999999999999998777


Q ss_pred             EecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          458 EDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       458 ~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ... +...+..++|+|++.++++++.+
T Consensus       387 ~~~-~~~~~~~~~~~~~~~~l~~~~dg  412 (464)
T 3v7d_B          387 SYH-HTNLSAITTFYVSDNILVSGSEN  412 (464)
T ss_dssp             EEE-CTTCCCEEEEEECSSEEEEEETT
T ss_pred             eec-CCCCccEEEEEeCCCEEEEecCC
Confidence            764 56678889999998777776644

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.1e-25  Score=241.58  Aligned_cols=259  Identities=9%  Similarity=0.018  Sum_probs=177.3

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCcee-EEeccccCcEEEEEEcCC-CCEEEEEeCC-eEEEEECCCCcEEEEeee--
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTM-HLVASFKCTVWTADFCTN-PSQAVIGTNL-GAAMVDMETGMASWVCRS--  295 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~~~~s~~-g~~l~s~s~~-~i~vwd~~~~~~~~~~~~--  295 (513)
                      ..+|.+.+|++.+....  .+.+...... ..+.+|...|++++|+|+ +..+++|+++ .| +||+.++++...+..  
T Consensus       117 s~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~  193 (902)
T 2oaj_A          117 LQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYEL  193 (902)
T ss_dssp             ETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCB
T ss_pred             cCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEeccc
Confidence            45888999998754321  0000000000 225789999999999996 4677777654 58 999999988776653  


Q ss_pred             -----------------CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc---cc-------------cCc
Q 037288          296 -----------------KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG---RR-------------HRI  342 (513)
Q Consensus       296 -----------------~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~~-------------h~~  342 (513)
                                       ...|.+++|+|+|.+|++|+.||+|++||+++++... .+.+   ..             |..
T Consensus       194 ~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~-~r~l~~~~~~~~~~~~~~~~~~~~~  272 (902)
T 2oaj_A          194 PPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM-ARTVFETEINVPQPDYIRDSSTNAA  272 (902)
T ss_dssp             CTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE-EECSSCSCTTSCCTTCCCCCSSCCC
T ss_pred             CCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE-EEeecccccCCCCCcCCCCCccccC
Confidence                             3669999999999999999999999999999876533 1122   12             455


Q ss_pred             CeEEEeeC----C----eEEEeE------------eecc------------------------------cCcc-------
Q 037288          343 PYSRLQRN----D----RVTNEQ------------WFEL------------------------------KANI-------  365 (513)
Q Consensus       343 ~v~~v~~~----~----~~~s~~------------w~~~------------------------------~~~~-------  365 (513)
                      +|.+++|+    |    .+++++            |+..                              .+..       
T Consensus       273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  352 (902)
T 2oaj_A          273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIP  352 (902)
T ss_dssp             EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECC
T ss_pred             CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECC
Confidence            79999993    3    355553            2210                              0000       


Q ss_pred             ----------cc-----------eeEee-------------------cCCCceEE-------------------------
Q 037288          366 ----------WP-----------SHTTF-------------------MPSSISCL-------------------------  380 (513)
Q Consensus       366 ----------~~-----------~~~~~-------------------~~~~v~~~-------------------------  380 (513)
                                .+           ...+.                   +...+.++                         
T Consensus       353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~  432 (902)
T 2oaj_A          353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK  432 (902)
T ss_dssp             SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCC
T ss_pred             CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCccc
Confidence                      00           00000                   00112222                         


Q ss_pred             --------EEEcCCCCEEEEEecCCeEEEEecCCCCcc--ceEE--ec-----CCCCceeEEEEEEcCCCCEEEEEeCCC
Q 037288          381 --------QSLQLYDQYFLASSMDGTVKLYDHRLTTRG--AVQS--YE-----GHVNSHTRIQLGVDQSERFVMSGGEDC  443 (513)
Q Consensus       381 --------~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~--~~~~--~~-----~h~~~v~~~~~~~s~~g~~l~sg~~Dg  443 (513)
                              +.++|++++|++|+.|++|++||+......  ....  +.     +|...|..  ++|+|++++||+|+.||
T Consensus       433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s--vafspdg~~LAsgs~Dg  510 (902)
T 2oaj_A          433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK--ISFAAETLELAVSIETG  510 (902)
T ss_dssp             CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE--EEEETTTTEEEEEETTS
T ss_pred             CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE--EEecCCCCeEEEEecCc
Confidence                    124678999999999999999999632111  1111  11     78888877  99999999999999999


Q ss_pred             cEEEEeCCCC---------------------------------------------eEEEEecCCCCCeEEEEEcCCCceE
Q 037288          444 KLRIWSIRSG---------------------------------------------ELVFEDKFSNSVPSAVCWRTQRSMG  478 (513)
Q Consensus       444 ~v~vwd~~~~---------------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~~  478 (513)
                      +|+|||+.++                                             +++..+..|.+.|++++|+|++ ++
T Consensus       511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l  589 (902)
T 2oaj_A          511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV  589 (902)
T ss_dssp             CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred             EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence            9999999876                                             3467788899999999999999 88


Q ss_pred             EeeCCCee
Q 037288          479 PQIEGKIH  486 (513)
Q Consensus       479 ~t~~~~~~  486 (513)
                      |+++.|-.
T Consensus       590 Asgs~D~t  597 (902)
T 2oaj_A          590 GIAYAAGS  597 (902)
T ss_dssp             EEEETTSE
T ss_pred             EEEeCCCc
Confidence            88776654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8.2e-25  Score=214.91  Aligned_cols=178  Identities=11%  Similarity=0.074  Sum_probs=134.7

Q ss_pred             ccccCcEEEEEEcC--CCCEEEEEe-CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          253 ASFKCTVWTADFCT--NPSQAVIGT-NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       253 ~~h~~~V~~~~~s~--~g~~l~s~s-~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      .+|...|.+++|+|  ++.++++|+ |+.|++||+.+++......  +...|.+++|+|++.+|++|+.||.|++||+++
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            36778999999999  999999886 4569999999999876653  455799999999999999999999999999998


Q ss_pred             Cccccccccccc-cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          328 RQRGCSSRAGRR-HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       328 ~~~~~~~~~~~~-h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ++..  ...+.. |..+|.++                                  .|+|++.+|++++ |+.|++||++ 
T Consensus       202 ~~~~--~~~~~~~h~~~v~~l----------------------------------~fs~~g~~l~s~~-~~~v~iwd~~-  243 (343)
T 3lrv_A          202 PDQA--SSRFPVDEEAKIKEV----------------------------------KFADNGYWMVVEC-DQTVVCFDLR-  243 (343)
T ss_dssp             TTSC--CEECCCCTTSCEEEE----------------------------------EECTTSSEEEEEE-SSBEEEEETT-
T ss_pred             CCCC--ccEEeccCCCCEEEE----------------------------------EEeCCCCEEEEEe-CCeEEEEEcC-
Confidence            8753  135666 88888885                                  4566999999999 5599999998 


Q ss_pred             CCccceEEec---CCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          407 TTRGAVQSYE---GHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       407 ~~~~~~~~~~---~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                       ....+..+.   .|...+...+++|+|+|++|++++. |+.|++|++.........    .++..++|++
T Consensus       244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~  309 (343)
T 3lrv_A          244 -KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQS  309 (343)
T ss_dssp             -SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC--
T ss_pred             -CCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCc
Confidence             444433333   3444333234899999999999998 999999999765433332    4566777777

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=1.6e-24  Score=237.33  Aligned_cols=228  Identities=11%  Similarity=0.070  Sum_probs=192.4

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...+.+|.+.|.+++|+|++.+|++|+. +.|++||+.+++.+..+. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            4568899999999999999999998865 569999999998877766 88889999999999999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEec
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSM  395 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~  395 (513)
                      +++.   +..+.+|...|.+++|+|   .+++++       |+...+.........+...+.++ .|+| +++.|++++.
T Consensus        86 ~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           86 TGEK---VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV-AFNPKDPSTFASGCL  161 (814)
T ss_dssp             TCCE---EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE-EEETTEEEEEEEEET
T ss_pred             CCcE---EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE-EEEcCCCCEEEEEeC
Confidence            8876   447889999999999999   577766       88876633222333456667776 6777 8899999999


Q ss_pred             CCeEEEEecCCCCccceEEecCCC-CceeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHV-NSHTRIQLGVDQ--SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~s~--~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      ||.|++||++  .......+..|. ..+..  ++|+|  ++.+|++|+.||.|++||+.+++.+..+..|...|++++|+
T Consensus       162 dg~v~vwd~~--~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  237 (814)
T 3mkq_A          162 DRTVKVWSLG--QSTPNFTLTTGQERGVNY--VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH  237 (814)
T ss_dssp             TSEEEEEETT--CSSCSEEEECCCTTCCCE--EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEECC--CCcceeEEecCCCCCEEE--EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            9999999997  444555665544 77777  78888  99999999999999999999999999999999999999999


Q ss_pred             CCCceEEeeCCC
Q 037288          473 TQRSMGPQIEGK  484 (513)
Q Consensus       473 p~~~~~~t~~~~  484 (513)
                      |++.++++++.+
T Consensus       238 ~~~~~l~~~~~d  249 (814)
T 3mkq_A          238 PTLPIIISGSED  249 (814)
T ss_dssp             SSSSEEEEEETT
T ss_pred             CCCCEEEEEeCC
Confidence            998777777654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=1.1e-25  Score=223.09  Aligned_cols=183  Identities=9%  Similarity=0.111  Sum_probs=146.0

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEe---eeC
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVC---RSK  296 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~---~~~  296 (513)
                      +..++.+.+|++.+...            +..+ .|...|++++|+|+|+++++++++++++|+..++......   .|.
T Consensus       153 ~~~d~~i~iwd~~~~~~------------~~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~  219 (365)
T 4h5i_A          153 SKVPAIMRIIDPSDLTE------------KFEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKN  219 (365)
T ss_dssp             SCSSCEEEEEETTTTEE------------EEEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTT
T ss_pred             CCCCCEEEEeECCCCcE------------EEEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCC
Confidence            34577888888764322            2333 4778999999999999999999999999998888765432   256


Q ss_pred             CCeEEEEEecCCcEEEEEeCCC----eEEEEECCCCcccc-ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEe
Q 037288          297 SDILAQQVIHSGNVVLCGFRNG----AIVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTT  371 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~  371 (513)
                      ..|.+++|+|++..+++++.|+    .+++||+....... ....+.+|..+|+++                        
T Consensus       220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------------------  275 (365)
T 4h5i_A          220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM------------------------  275 (365)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE------------------------
T ss_pred             CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE------------------------
Confidence            6799999999999999999887    68889987664322 023455666666663                        


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          372 FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       372 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                                .|+|+|++||+|+.|+.|+|||++  ...++.++ .+|...|++  ++|+|||++|++||.|++|+|||+
T Consensus       276 ----------~~Spdg~~lasgs~D~~V~iwd~~--~~~~~~~~~~gH~~~V~~--v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          276 ----------DVDMKGELAVLASNDNSIALVKLK--DLSMSKIFKQAHSFAITE--VTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             ----------EECTTSCEEEEEETTSCEEEEETT--TTEEEEEETTSSSSCEEE--EEECTTSCEEEEEETTSEEEEEEC
T ss_pred             ----------EECCCCCceEEEcCCCEEEEEECC--CCcEEEEecCcccCCEEE--EEECCCCCEEEEEeCCCeEEEEEc
Confidence                      567799999999999999999997  55577775 799999987  999999999999999999999999


Q ss_pred             CCC
Q 037288          451 RSG  453 (513)
Q Consensus       451 ~~~  453 (513)
                      ...
T Consensus       342 p~~  344 (365)
T 4h5i_A          342 PLN  344 (365)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=2.5e-25  Score=223.50  Aligned_cols=249  Identities=13%  Similarity=0.106  Sum_probs=189.1

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCC-------cEE
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETG-------MAS  290 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~-------~~~  290 (513)
                      +..+|.+.+|++.......        ..+..+.+|...|.+++|+| ++.+|++|+. +.|++||+.++       +.+
T Consensus        53 ~~~~g~i~v~~~~~~~~~~--------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~  124 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVD--------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV  124 (402)
T ss_dssp             CSSSCCEEEEETTCCEECC--------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS
T ss_pred             EcCCCEEEEEECccCCCCC--------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCce
Confidence            4467889999886432211        11334789999999999999 9999999875 55999999987       334


Q ss_pred             EEe-eeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccc--cccCcCeEEEeeCC---eEEEeE------
Q 037288          291 WVC-RSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAG--RRHRIPYSRLQRND---RVTNEQ------  357 (513)
Q Consensus       291 ~~~-~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~~~---~~~s~~------  357 (513)
                      ..+ .|...|.+++|+|++ ++|++|+.||.|++||+++++..   ..+  .+|...|.+++|+|   .+++++      
T Consensus       125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  201 (402)
T 2aq5_A          125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV---LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR  201 (402)
T ss_dssp             EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE---EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc---EEEecCCCCCceEEEEECCCCCEEEEEecCCcEE
Confidence            444 488899999999998 79999999999999999988753   366  78999999999998   677776      


Q ss_pred             -eecccCcccceeEeecCCC-ceEEEEEcCCCCEEEEE---ecCCeEEEEecCCCCcc-ceEEec-CCCCceeEEEEEEc
Q 037288          358 -WFELKANIWPSHTTFMPSS-ISCLQSLQLYDQYFLAS---SMDGTVKLYDHRLTTRG-AVQSYE-GHVNSHTRIQLGVD  430 (513)
Q Consensus       358 -w~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~---s~dg~i~lwd~~~~~~~-~~~~~~-~h~~~v~~~~~~~s  430 (513)
                       |+...+.........+... +.+ +.+++++++|++|   +.|+.|++||++  ... ++.... .|...+..  ++|+
T Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~--~~~s  276 (402)
T 2aq5_A          202 VIEPRKGTVVAEKDRPHEGTRPVH-AVFVSEGKILTTGFSRMSERQVALWDTK--HLEEPLSLQELDTSSGVLL--PFFD  276 (402)
T ss_dssp             EEETTTTEEEEEEECSSCSSSCCE-EEECSTTEEEEEEECTTCCEEEEEEETT--BCSSCSEEEECCCCSSCEE--EEEE
T ss_pred             EEeCCCCceeeeeccCCCCCcceE-EEEcCCCcEEEEeccCCCCceEEEEcCc--cccCCceEEeccCCCceeE--EEEc
Confidence             9988776432221233343 455 4788999999999   789999999997  333 233332 46666655  8999


Q ss_pred             CCCCEEE-EEeCCCcEEEEeCCCCeE-EEEecC--CCCCeEEEEEcCCCceEEeeCCC
Q 037288          431 QSERFVM-SGGEDCKLRIWSIRSGEL-VFEDKF--SNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       431 ~~g~~l~-sg~~Dg~v~vwd~~~~~~-~~~~~~--~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      |++++|+ +|+.||.|++||+.+++. +..+..  +..+|.+++|+|++.++++.+..
T Consensus       277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~  334 (402)
T 2aq5_A          277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEI  334 (402)
T ss_dssp             TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEE
T ss_pred             CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceeccee
Confidence            9999986 455799999999999873 444332  46889999999998887765553

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=8.5e-24  Score=213.66  Aligned_cols=245  Identities=11%  Similarity=0.095  Sum_probs=193.5

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeE
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDIL  300 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~  300 (513)
                      ++.+.+|+..+....          .+..+.+|...|++++|+|+|++|++|+. +.|+|||+.+++.+..+. |...|.
T Consensus       124 d~tV~lWd~~tg~~~----------~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~  193 (420)
T 4gga_A          124 DNSVYLWSASSGDIL----------QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG  193 (420)
T ss_dssp             TTEEEEEETTTCCEE----------EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEEECCCCCEE----------EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE
Confidence            678889988754332          23446688899999999999999999865 459999999999877766 777798


Q ss_pred             EEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccc--ce
Q 037288          301 AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIW--PS  368 (513)
Q Consensus       301 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~--~~  368 (513)
                      +++++  +.+|++|+.|+.+++||.+.....  +..+.+|...+..+.+.+   .+++++       |+...++..  ..
T Consensus       194 ~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~--~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~  269 (420)
T 4gga_A          194 SLSWN--SYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL  269 (420)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEETTSSSCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred             EEeeC--CCEEEEEeCCCceeEeeeccccee--eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee
Confidence            88774  789999999999999999876532  567899999999999998   566665       887765432  12


Q ss_pred             -eEeecCCCceEEEEEcCCCCEEEEE--ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe--CCC
Q 037288          369 -HTTFMPSSISCLQSLQLYDQYFLAS--SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG--EDC  443 (513)
Q Consensus       369 -~~~~~~~~v~~~~~~~~~~~~l~s~--s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~--~Dg  443 (513)
                       ....+...|.++.+.+.+..+++++  +.|++|++||++  ...++..+..|.. +..  +.|+++++.|++++  .|+
T Consensus       270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~--t~~~~~~~~~~~~-v~~--~~~~~~~~~lv~~sg~~d~  344 (420)
T 4gga_A          270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--SGACLSAVDAHSQ-VCS--ILWSPHYKELISGHGFAQN  344 (420)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT--TTEEEEEEECSSC-EEE--EEEETTTTEEEEEECTTTC
T ss_pred             eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC--ccccceeeccccc-eee--eeecCCCCeEEEEEecCCC
Confidence             2334456677765544456666654  479999999997  5557777776553 444  78999999988765  799


Q ss_pred             cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .|+|||+.+++++.++.+|.+.|++++|+|++.+++|++.|-.
T Consensus       345 ~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          345 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence            9999999999999999999999999999999999999887754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=4.3e-24  Score=208.42  Aligned_cols=227  Identities=11%  Similarity=0.069  Sum_probs=173.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC--CCCEEEEEeC-CeEEEEECCCC---------cE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT--NPSQAVIGTN-LGAAMVDMETG---------MA  289 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~g~~l~s~s~-~~i~vwd~~~~---------~~  289 (513)
                      .+|.+.+|++.+.....        .....+.+|...|.+++|+|  ++.+|++|+. +.|++||+.++         +.
T Consensus        31 ~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~  102 (351)
T 3f3f_A           31 SDQHIKVFKLDKDTSNW--------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK  102 (351)
T ss_dssp             TTSEEEEEEECSSSCCE--------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEE
T ss_pred             CCCeEEEEECCCCCCcc--------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcce
Confidence            57889999887433221        13456789999999999999  6899998865 55999999886         33


Q ss_pred             EEEe-eeCCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCccccccc----------cccccCcCeEEEeeCC-----
Q 037288          290 SWVC-RSKSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQRGCSSR----------AGRRHRIPYSRLQRND-----  351 (513)
Q Consensus       290 ~~~~-~~~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------~~~~h~~~v~~v~~~~-----  351 (513)
                      ...+ .|...|.+++|+|+  +++|++|+.||.|++||+++.+....+.          ....|...+.+++|+|     
T Consensus       103 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  182 (351)
T 3f3f_A          103 LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP  182 (351)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred             eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence            4444 47888999999999  9999999999999999998876533110          1126888999999986     


Q ss_pred             -eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCC----CEEEEEecCCeEEEEecCCCC----------
Q 037288          352 -RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYD----QYFLASSMDGTVKLYDHRLTT----------  408 (513)
Q Consensus       352 -~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~----~~l~s~s~dg~i~lwd~~~~~----------  408 (513)
                       .+++++       |+...+.......+. +...+.++ .++|++    ++|++++.||.|++||++...          
T Consensus       183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  261 (351)
T 3f3f_A          183 EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI-SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT  261 (351)
T ss_dssp             CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE-EECCCSSCSSEEEEEEETTSCEEEEEEEECC----------
T ss_pred             cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE-EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc
Confidence             466655       444444433333443 45566665 788887    899999999999999997310          


Q ss_pred             ----------------------------------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          409 ----------------------------------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       409 ----------------------------------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                                                        ...+..+.+|...|+.  ++|+|++++|++|+.||.|++||+.+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS--VSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             -----------------------------CCSEEEEEEEEECTTSSCEEE--EEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             ceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE--EEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence                                              1366778899999877  8999999999999999999999999886


Q ss_pred             EEEEe
Q 037288          455 LVFED  459 (513)
Q Consensus       455 ~~~~~  459 (513)
                      .+..+
T Consensus       340 ~~~~~  344 (351)
T 3f3f_A          340 EFKCM  344 (351)
T ss_dssp             CEEEE
T ss_pred             chhhe
Confidence            55443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=1.9e-25  Score=216.84  Aligned_cols=189  Identities=10%  Similarity=0.013  Sum_probs=142.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC--CCEEEEEe-CCeEEEEECCCCcEE---EEe-
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN--PSQAVIGT-NLGAAMVDMETGMAS---WVC-  293 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--g~~l~s~s-~~~i~vwd~~~~~~~---~~~-  293 (513)
                      ..++.+.+|++.+...          .....+.+|...|++++|+|+  +.+|++|+ |+.|++||+.++...   ..+ 
T Consensus        78 s~D~~v~iWd~~~~~~----------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~  147 (316)
T 3bg1_A           78 SYDRKVIIWREENGTW----------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN  147 (316)
T ss_dssp             ETTSCEEEECCSSSCC----------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred             ECCCEEEEEECCCCcc----------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence            3578888888764221          134567899999999999997  78898886 456999999876422   112 


Q ss_pred             eeCCCeEEEEEecC-----------------CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288          294 RSKSDILAQQVIHS-----------------GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       294 ~~~~~V~~l~~~~~-----------------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~  356 (513)
                      .|...|.+++|+|+                 +.+|++|+.|++|++||++.......+..+.+|..+|.+++|+|     
T Consensus       148 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-----  222 (316)
T 3bg1_A          148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-----  222 (316)
T ss_dssp             SSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-----
T ss_pred             cccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-----
Confidence            37778999999997                 46899999999999999975532111557889999999977654     


Q ss_pred             EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCC
Q 037288          357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSER  434 (513)
Q Consensus       357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~  434 (513)
                                               ....++++|++++.|++|++||++.....  ....+.+|...+..  ++|+|+++
T Consensus       223 -------------------------~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~--v~~sp~g~  275 (316)
T 3bg1_A          223 -------------------------SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH--VSWSITAN  275 (316)
T ss_dssp             -------------------------CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEE--EEECTTTC
T ss_pred             -------------------------CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEE--EEEcCCCC
Confidence                                     00012378999999999999998731111  23455678888766  89999999


Q ss_pred             EEEEEeCCCcEEEEeCC
Q 037288          435 FVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       435 ~l~sg~~Dg~v~vwd~~  451 (513)
                      +|++|+.||+|+||+..
T Consensus       276 ~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          276 ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEESSSCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEEC
Confidence            99999999999999976

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=2.1e-24  Score=218.17  Aligned_cols=222  Identities=10%  Similarity=0.097  Sum_probs=171.5

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCc-EEEEe-eeCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGM-ASWVC-RSKS  297 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~-~~~~~-~~~~  297 (513)
                      ..+|.+.+|++.+.            ..+..+.+|...|.++++  ++.++++|+.+ .+++||..... .+..+ .|..
T Consensus       166 s~Dg~v~iWd~~~~------------~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~  231 (420)
T 4gga_A          166 TSSAEVQLWDVQQQ------------KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ  231 (420)
T ss_dssp             ETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             ECCCeEEEEEcCCC------------cEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEeccccc
Confidence            35788888887643            235668899999999887  46788888655 59999988654 33333 4888


Q ss_pred             CeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc-ccccccccCcCeEEEeeCC----eEEEeE---------eecccC
Q 037288          298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRND----RVTNEQ---------WFELKA  363 (513)
Q Consensus       298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~----~~~s~~---------w~~~~~  363 (513)
                      .+..+.|+|++.++++++.|+.|++||...++... .+.....|...|.+++|+|    .+++++         |+...+
T Consensus       232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            89999999999999999999999999998765422 1456788999999999998    333332         888877


Q ss_pred             cccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC
Q 037288          364 NIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE  441 (513)
Q Consensus       364 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~  441 (513)
                      ..  ...+.....+.++ .++++++.+++++  .|+.|++||++  ...++.++.+|.+.|.+  ++|+|+|++|+||+.
T Consensus       312 ~~--~~~~~~~~~v~~~-~~~~~~~~lv~~sg~~d~~I~iwd~~--~~~~v~~l~gH~~~V~~--l~~spdg~~l~S~s~  384 (420)
T 4gga_A          312 AC--LSAVDAHSQVCSI-LWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLS--LTMSPDGATVASAAA  384 (420)
T ss_dssp             EE--EEEEECSSCEEEE-EEETTTTEEEEEECTTTCCEEEEETT--TCCEEEEECCCSSCEEE--EEECTTSSCEEEEET
T ss_pred             cc--ceeeccccceeee-eecCCCCeEEEEEecCCCEEEEEECC--CCcEEEEEcCCCCCEEE--EEEcCCCCEEEEEec
Confidence            64  3455566677776 5677888888765  68999999997  56689999999999877  899999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEecCCC
Q 037288          442 DCKLRIWSIRSGELVFEDKFSN  463 (513)
Q Consensus       442 Dg~v~vwd~~~~~~~~~~~~~~  463 (513)
                      |++|+|||+.+..+......+.
T Consensus       385 D~tvriWdv~~~~~~~~~~~~~  406 (420)
T 4gga_A          385 DETLRLWRCFELDPARRREREK  406 (420)
T ss_dssp             TTEEEEECCSCSSCC-------
T ss_pred             CCeEEEEECCCCCccchhhhcc
Confidence            9999999998876665544443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=5.2e-25  Score=220.57  Aligned_cols=245  Identities=10%  Similarity=-0.021  Sum_probs=161.6

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC--------CCCEEEEEeCC-eEEEEECCCCcE-
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT--------NPSQAVIGTNL-GAAMVDMETGMA-  289 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--------~g~~l~s~s~~-~i~vwd~~~~~~-  289 (513)
                      +..++.+.+|++......       ....+..+.+|.+.|++++|+|        ++++||+|+++ +|+|||+.++.+ 
T Consensus       107 ~~~d~~v~lw~~~~~~~~-------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETII-------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EETTSCEEEEEEETTEEE-------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             EeCCCcEEEEECCCCccc-------eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            446788888887643221       1112334789999999999998        78999998755 599999987764 


Q ss_pred             EEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccc-cccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288          290 SWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSR-AGRRHRIPYSRLQRNDRVTNEQWFELKANIWP  367 (513)
Q Consensus       290 ~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~  367 (513)
                      .....|.+.|.+++|+|++ ++|++|+.|++|++||+++++...... ....+...+....+.+            ....
T Consensus       180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~------------~~~~  247 (393)
T 4gq1_A          180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP------------LVNT  247 (393)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG------------GC--
T ss_pred             eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc------------ceee
Confidence            4556689999999999987 589999999999999999876533111 1112222223322211            0000


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEE----------------EEEEcC
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI----------------QLGVDQ  431 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~----------------~~~~s~  431 (513)
                      .....+...+.++.+..++++.|++++.|+.+++||+.  .......+..|...+...                ...++|
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF--ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc--cCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence            11123456777877788999999999999999999997  333344444443332220                123333


Q ss_pred             --CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          432 --SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       432 --~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                        ++.++++|+.||.|++||+.+++++..+..|..+|++++|+|++.++|++..+-
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence              345678889999999999999998888888889999999999988877776553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2.7e-25  Score=220.91  Aligned_cols=214  Identities=8%  Similarity=-0.034  Sum_probs=156.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCc----EEEEeeeC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGM----ASWVCRSK  296 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~----~~~~~~~~  296 (513)
                      .+|.+.+|++.+...          ..+..+.+|...|.+++|+|++++|++++. +.|++||+.++.    ......|.
T Consensus        31 ~d~~i~iw~~~~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~  100 (377)
T 3dwl_C           31 ATNQVELYEQDGNGW----------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN  100 (377)
T ss_dssp             SSSCBCEEEEETTEE----------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS
T ss_pred             CCCEEEEEEccCCce----------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC
Confidence            467777777663310          123457899999999999999999998875 569999999876    34444588


Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccc-cCcCeEEEeeCC---eEEEeE-------eecccCcc
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRR-HRIPYSRLQRND---RVTNEQ-------WFELKANI  365 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~~~---~~~s~~-------w~~~~~~~  365 (513)
                      ..|.+++|+|++++|++|+.|+.|++||++..+.......+.+ |...|.+++|+|   .+++++       |+......
T Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  180 (377)
T 3dwl_C          101 RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDV  180 (377)
T ss_dssp             SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSC
T ss_pred             CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEeccc
Confidence            8999999999999999999999999999998763221446677 999999999998   677776       88753221


Q ss_pred             ----------------cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc----eEEecCCCCceeEE
Q 037288          366 ----------------WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA----VQSYEGHVNSHTRI  425 (513)
Q Consensus       366 ----------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~----~~~~~~h~~~v~~~  425 (513)
                                      .....+.+...+.++ .|+|++++|++++.||.|++||++  ....    +..+.+|...+.. 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~v~~-  256 (377)
T 3dwl_C          181 DAKPEASVWGSRLPFNTVCAEYPSGGWVHAV-GFSPSGNALAYAGHDSSVTIAYPS--APEQPPRALITVKLSQLPLRS-  256 (377)
T ss_dssp             C-CCCSCSSCSCCCEEEEEECCCCSSSEEEE-EECTTSSCEEEEETTTEEC-CEEC--STTSCEEECCCEECSSSCEEE-
T ss_pred             CCCccccccccccchhhhhhcccCCceEEEE-EECCCCCEEEEEeCCCcEEEEECC--CCCCcceeeEeecCCCCceEE-
Confidence                            111222455566665 789999999999999999999997  4444    7788899998877 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          426 QLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                       ++|+|++++|++|+.|+.+ +|+..
T Consensus       257 -~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          257 -LLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             -EEEEETTEEEEEESSSSEE-EECCC
T ss_pred             -EEEcCCCCEEEEEcCCcEE-EEEeC
Confidence             8899999999998866655 66654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=3.5e-24  Score=210.58  Aligned_cols=228  Identities=12%  Similarity=0.104  Sum_probs=178.5

Q ss_pred             EEeccccCcEEEEEEcCCCCEEE-EEe----CCeEEEEECCCCcEEE--EeeeCCCeEEEEEecC---CcEEEEEeCCCe
Q 037288          250 HLVASFKCTVWTADFCTNPSQAV-IGT----NLGAAMVDMETGMASW--VCRSKSDILAQQVIHS---GNVVLCGFRNGA  319 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~-s~s----~~~i~vwd~~~~~~~~--~~~~~~~V~~l~~~~~---~~~l~sg~~dg~  319 (513)
                      ..+.+|...|.+++|+|++..++ +|+    |+.|++||+.+++...  ...|...|.+++|+|+   +.+|++|+.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            44678999999999999996554 554    5669999999987643  3468889999999998   699999999999


Q ss_pred             EEEEECCCCc-cccccccccccCcCeEEEee------CC---eEEEeE-------eecccCcccceeEee-c----CCCc
Q 037288          320 IVTVDVRKRQ-RGCSSRAGRRHRIPYSRLQR------ND---RVTNEQ-------WFELKANIWPSHTTF-M----PSSI  377 (513)
Q Consensus       320 i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~------~~---~~~s~~-------w~~~~~~~~~~~~~~-~----~~~v  377 (513)
                      |++||+...+ .   +..+.+|...|.+++|      ++   .+++++       |+...+... ...+. +    ...+
T Consensus        92 i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           92 LHIWNLEAPEMP---VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP-VANMEPVQGENKRDC  167 (357)
T ss_dssp             EEEECTTSCSSC---SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-SEEECCCTTSCCCCE
T ss_pred             EEEEeCCCCCcc---EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-ceeccccCCCCCCce
Confidence            9999999876 3   4578899999999955      45   677776       888776522 22222 1    2256


Q ss_pred             eEEEE---EcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC---CCCEEEEEeCCCcEEEEeCC
Q 037288          378 SCLQS---LQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ---SERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       378 ~~~~~---~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~---~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      .++.+   +++++++|++++.||.|++||++  .... .....|...+..  ++|+|   ++.+|++|+.||.|++||++
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~-~~~~~~~~~v~~--~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLR--NMAL-RWETNIKNGVCS--LEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEETTSEEEEEETT--TTEE-EEEEECSSCEEE--EEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEEccCCeEEEEECc--cCce-eeecCCCCceEE--EEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            66643   77999999999999999999997  3333 344568888776  89999   99999999999999999998


Q ss_pred             CCeEEEEec-----CCCCCeEEEEEcCCCc-eEEeeCCCee
Q 037288          452 SGELVFEDK-----FSNSVPSAVCWRTQRS-MGPQIEGKIH  486 (513)
Q Consensus       452 ~~~~~~~~~-----~~~~~v~~v~~~p~~~-~~~t~~~~~~  486 (513)
                      +++.+..+.     .|...|++++|+|++. ++++++.|-.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            877554443     8899999999999966 7777766533

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=3.8e-24  Score=211.26  Aligned_cols=224  Identities=12%  Similarity=0.059  Sum_probs=171.0

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEE-EEEeCCCeEEEEECCC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVV-LCGFRNGAIVTVDVRK  327 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l-~sg~~dg~i~iwd~~~  327 (513)
                      +..+.+|...|++++|+|||++|++|+++++++||+.+++......+ ..+..+++.++++.+ ++|+.|++|++||+.+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            44568899999999999999999999999999999998776554443 358888899888766 6778889999999998


Q ss_pred             CccccccccccccCcCeEEEeeCC-eEEEeE------eecccC-cccceeEeecCCCceEEEEEcCCCCEEEE--EecCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ------WFELKA-NIWPSHTTFMPSSISCLQSLQLYDQYFLA--SSMDG  397 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~------w~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~s~dg  397 (513)
                      ++...   .+. |..+|.++.+++ .++.+.      |+.... +....  +..   ...+..+++  .++++  |+.||
T Consensus        91 ~~~~~---~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~---~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           91 KQDVS---RIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITD--DIR---FGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TEEEE---EEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSC--CEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred             CcEEE---EEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEE--ecc---CCceEEEEc--cEEEEeCCCcCc
Confidence            87643   443 667999999999 444333      887765 33221  111   233445665  66666  57899


Q ss_pred             eEEEEecCCCC------c-------cc-eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEec-C
Q 037288          398 TVKLYDHRLTT------R-------GA-VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-LRIWSIRSGELVFEDK-F  461 (513)
Q Consensus       398 ~i~lwd~~~~~------~-------~~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-v~vwd~~~~~~~~~~~-~  461 (513)
                      .|++||++...      .       .+ +..+.+|...|.+  ++|+|+|++|++|+.|++ |++||+.+++++..+. +
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~--~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g  237 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM--VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG  237 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEE--EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEE--EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            99999997311      0       02 7889999999887  899999999999999998 9999999999999997 4


Q ss_pred             -CCCCeEEEEEcCCCceEEeeCCCee
Q 037288          462 -SNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       462 -~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                       |...|++++|+|++.++++++.|-.
T Consensus       238 ~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          238 LDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             TCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCE
Confidence             8899999999999888888877643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=6.5e-24  Score=211.50  Aligned_cols=206  Identities=11%  Similarity=0.058  Sum_probs=164.5

Q ss_pred             eeEEeccccCcEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCcEEEEee---eCCCeEEEEEec-CCcEEEEEeCCCeEE
Q 037288          248 TMHLVASFKCTVWTADFCTNP-SQAVIGT-NLGAAMVDMETGMASWVCR---SKSDILAQQVIH-SGNVVLCGFRNGAIV  321 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g-~~l~s~s-~~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~-~~~~l~sg~~dg~i~  321 (513)
                      ....+.+|...|++++|+|++ ++|++|+ |+.|++||+.+++....+.   |...|.+++|+| ++++|++|+.|+.|+
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            456688999999999999999 8999886 4569999999888666654   788899999999 679999999999999


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCC-E
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQ-Y  389 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~  389 (513)
                      +||++...... +.....|...|.+++|+|   .+++++       |+.. +.  ....+. +...+.++ .|+|+++ +
T Consensus       145 iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~--~~~~~~~h~~~v~~~-~~~~~~~~~  219 (383)
T 3ei3_B          145 LRDFSGSVIQV-FAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH--EIFKEKLHKAKVTHA-EFNPRCDWL  219 (383)
T ss_dssp             EEETTSCEEEE-EECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--EEEEEECSSSCEEEE-EECSSCTTE
T ss_pred             EEECCCCceEE-EeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--EEEEeccCCCcEEEE-EECCCCCCE
Confidence            99999644322 344455668999999998   677766       8873 22  233343 45566665 7888888 9


Q ss_pred             EEEEecCCeEEEEecCCCC--ccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288          390 FLASSMDGTVKLYDHRLTT--RGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~--~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~  461 (513)
                      |++++.|+.|++||++...  ..++..+ +|...+..  ++|+| ++++|++++.|+.|++||+.+++.+..+..
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~--~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  291 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNA--AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII  291 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEE--EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEE--EEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence            9999999999999998322  2255555 68888877  89999 999999999999999999999877666543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=6e-24  Score=215.79  Aligned_cols=217  Identities=14%  Similarity=0.187  Sum_probs=177.1

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      +.+|...|.+++|  ++.++++|+. +.|++||+.+++.+..+. |...|.+++|+  +..|++|+.||.|++||+++..
T Consensus       169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~  244 (435)
T 1p22_A          169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT  244 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS
T ss_pred             EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC
Confidence            6678899999999  7889998865 569999999999877766 77789999996  4699999999999999999876


Q ss_pred             cccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      .......+.+|...|.+++|.. .+++++       |+...+...  ..+. +...+.++ .+  ++++|++|+.||.|+
T Consensus       245 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~-~~--~~~~l~~g~~dg~i~  319 (435)
T 1p22_A          245 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV--RTLNGHKRGIACL-QY--RDRLVVSGSSDNTIR  319 (435)
T ss_dssp             CCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEE-EE--ETTEEEEEETTSCEE
T ss_pred             CceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE--EEEcCCCCcEEEE-Ee--CCCEEEEEeCCCeEE
Confidence            5432357889999999999977 777776       988876543  3333 45566665 33  578999999999999


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---------EEEEecCCCCCeEEEEE
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE---------LVFEDKFSNSVPSAVCW  471 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~---------~~~~~~~~~~~v~~v~~  471 (513)
                      +||++  ...++.++.+|...+.+  ++|  ++.+|++|+.||.|++||+.+++         ++..+..|.+.|++++|
T Consensus       320 iwd~~--~~~~~~~~~~h~~~v~~--~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  393 (435)
T 1p22_A          320 LWDIE--CGACLRVLEGHEELVRC--IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF  393 (435)
T ss_dssp             EEETT--TCCEEEEECCCSSCEEE--EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             EEECC--CCCEEEEEeCCcCcEEE--EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence            99997  55688999999999877  555  78999999999999999998776         88889999999999999


Q ss_pred             cCCCceEEeeCCCe
Q 037288          472 RTQRSMGPQIEGKI  485 (513)
Q Consensus       472 ~p~~~~~~t~~~~~  485 (513)
                        ++..+++++.|-
T Consensus       394 --~~~~l~s~s~Dg  405 (435)
T 1p22_A          394 --DEFQIVSSSHDD  405 (435)
T ss_dssp             --CSSCEEECCSSS
T ss_pred             --CCCEEEEEeCCC
Confidence              444566666553

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=5e-24  Score=208.42  Aligned_cols=222  Identities=10%  Similarity=0.052  Sum_probs=181.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc----EEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEEC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM----ASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVDV  325 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~  325 (513)
                      ..+|.+.|.+++|+|++.+|++++ |+.|++||+.++.    ......|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            468999999999999999999885 5669999999887    666667889999999999999 9999999999999999


Q ss_pred             -CCCccccccccccc--cCcCeEEEeeCC--eEEEeE-------eeccc---------CcccceeEeecCCCceEEEEEc
Q 037288          326 -RKRQRGCSSRAGRR--HRIPYSRLQRND--RVTNEQ-------WFELK---------ANIWPSHTTFMPSSISCLQSLQ  384 (513)
Q Consensus       326 -~~~~~~~~~~~~~~--h~~~v~~v~~~~--~~~s~~-------w~~~~---------~~~~~~~~~~~~~~v~~~~~~~  384 (513)
                       ....    ...+.+  |...|.+++|++  .+++++       |+...         +..  ...+.+...+.++ .++
T Consensus        87 ~~~~~----~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~-~~~  159 (342)
T 1yfq_A           87 IGSPS----FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNTKVKNKIFTM-DTN  159 (342)
T ss_dssp             SSSSS----EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSSSSCCCEEEE-EEC
T ss_pred             ccCCc----eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCe--eeEEeeCCceEEE-Eec
Confidence             7664    346778  999999999986  677776       88775         442  2334467777776 566


Q ss_pred             CCCCEEEEEecCCeEEEEecCC-CCccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC------eEE
Q 037288          385 LYDQYFLASSMDGTVKLYDHRL-TTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSIRSG------ELV  456 (513)
Q Consensus       385 ~~~~~l~s~s~dg~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~------~~~  456 (513)
                      +++  |++++.|+.|++||++. ...........|...+.+  ++|+| ++++|++|+.||.|++|++...      +.+
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~--i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD--VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE--EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeE--EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            665  99999999999999973 222233445567777766  89999 9999999999999999999887      777


Q ss_pred             EEecCCCC---------CeEEEEEcCCCceEEeeCCC
Q 037288          457 FEDKFSNS---------VPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       457 ~~~~~~~~---------~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ..+..|..         .|++++|+|++.++++++.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  272 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence            78877755         89999999998777776655

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.93  E-value=8.9e-24  Score=211.51  Aligned_cols=229  Identities=12%  Similarity=0.040  Sum_probs=181.5

Q ss_pred             ceeEEeccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEe--------------eeCCCeEEEEEec-CCc
Q 037288          247 STMHLVASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVC--------------RSKSDILAQQVIH-SGN  309 (513)
Q Consensus       247 ~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~--------------~~~~~V~~l~~~~-~~~  309 (513)
                      .....+.+|.+.|.+++|+| ++++|++|+ |+.|++||+.++.....+              .|...|.+++|+| +++
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            34566888999999999999 999999886 455999999987643322              2788899999999 778


Q ss_pred             EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC------eEEEeE-------eecccCcccceeEee-cCC
Q 037288          310 VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND------RVTNEQ-------WFELKANIWPSHTTF-MPS  375 (513)
Q Consensus       310 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~------~~~s~~-------w~~~~~~~~~~~~~~-~~~  375 (513)
                      +|++++.||.|++||+++.+...   .+ .+...+.++.+.+      .+++++       |+...+...  ..+. +..
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~  187 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--HILQGHRQ  187 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--EEECCCCS
T ss_pred             EEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--eeecCCCC
Confidence            99999999999999999877533   33 3778899999987      455655       888776543  3333 556


Q ss_pred             CceEEEEEcCCCC-EEEEEecCCeEEEEecCCCCcc-ceEEe---------------cCCCCceeEEEEEEcCCCCEEEE
Q 037288          376 SISCLQSLQLYDQ-YFLASSMDGTVKLYDHRLTTRG-AVQSY---------------EGHVNSHTRIQLGVDQSERFVMS  438 (513)
Q Consensus       376 ~v~~~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~~~-~~~~~---------------~~h~~~v~~~~~~~s~~g~~l~s  438 (513)
                      .+.++ .++|++. +|++++.||.|++||++.  .. ++..+               .+|...+..  ++|+|++++|++
T Consensus       188 ~v~~~-~~~~~~~~ll~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~  262 (408)
T 4a11_B          188 EILAV-SWSPRYDYILATASADSRVKLWDVRR--ASGCLITLDQHNGKKSQAVESANTAHNGKVNG--LCFTSDGLHLLT  262 (408)
T ss_dssp             CEEEE-EECSSCTTEEEEEETTSCEEEEETTC--SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE--EEECTTSSEEEE
T ss_pred             cEEEE-EECCCCCcEEEEEcCCCcEEEEECCC--CCcccccccccccccceeeccccccccCceeE--EEEcCCCCEEEE
Confidence            67775 6788887 689999999999999973  32 44444               568888776  899999999999


Q ss_pred             EeCCCcEEEEeCCCC-----------------------------------------------eEEEEecCCCCCeEEEEE
Q 037288          439 GGEDCKLRIWSIRSG-----------------------------------------------ELVFEDKFSNSVPSAVCW  471 (513)
Q Consensus       439 g~~Dg~v~vwd~~~~-----------------------------------------------~~~~~~~~~~~~v~~v~~  471 (513)
                      ++.||.|++||+.++                                               +++..+..|...|++++|
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence            999999999998754                                               456667788899999999


Q ss_pred             cCCCceEEeeCCCee
Q 037288          472 RTQRSMGPQIEGKIH  486 (513)
Q Consensus       472 ~p~~~~~~t~~~~~~  486 (513)
                      +|++.++++++.|-.
T Consensus       343 s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          343 QSNFQELYSGSRDCN  357 (408)
T ss_dssp             ETTTTEEEEEETTSC
T ss_pred             cCCCCEEEEECCCCe
Confidence            999888887776643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=1.4e-23  Score=212.78  Aligned_cols=232  Identities=17%  Similarity=0.221  Sum_probs=185.3

Q ss_pred             eEEeccccCcEEEEEEcCC-CCEEEEEeC-CeEEEEECCC----------CcEEEE-eeeCCCeEEEEEecCCc-EEEEE
Q 037288          249 MHLVASFKCTVWTADFCTN-PSQAVIGTN-LGAAMVDMET----------GMASWV-CRSKSDILAQQVIHSGN-VVLCG  314 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~-g~~l~s~s~-~~i~vwd~~~----------~~~~~~-~~~~~~V~~l~~~~~~~-~l~sg  314 (513)
                      ......|.+.|++++|+|+ +.++++++. +.|++||+.+          ...... ..|...|.+++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            4556789999999999997 678888864 5599999986          343333 44888899999999997 99999


Q ss_pred             eCCCeEEEEECCCCcccc----ccccccccCcCeEEEeeCC----eEEEeE-------eecccCc-ccceeEe-ecCCCc
Q 037288          315 FRNGAIVTVDVRKRQRGC----SSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKAN-IWPSHTT-FMPSSI  377 (513)
Q Consensus       315 ~~dg~i~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~-~~~~~~~-~~~~~v  377 (513)
                      +.||.|++||+.......    ....+.+|...|.+++|+|    .+++++       |+.+.+. ..+...+ .+...+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999998743211    1345678999999999988    566665       9988763 2233344 455667


Q ss_pred             eEEEEEcCCCC-EEEEEecCCeEEEEecCCCC-ccceEEecCCCCceeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--
Q 037288          378 SCLQSLQLYDQ-YFLASSMDGTVKLYDHRLTT-RGAVQSYEGHVNSHTRIQLGVDQSER-FVMSGGEDCKLRIWSIRS--  452 (513)
Q Consensus       378 ~~~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~-~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~~Dg~v~vwd~~~--  452 (513)
                      .++ .|+|++. +|++|+.||.|++||++  . ..++..+.+|...+..  ++|+|+++ +|++++.||.|+|||+..  
T Consensus       281 ~~i-~~~p~~~~~l~tg~~dg~v~vwd~~--~~~~~~~~~~~h~~~v~~--i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          281 NCL-SFNPYSEFILATGSADKTVALWDLR--NLKLKLHSFESHKDEIFQ--VQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             EEE-EECSSCTTEEEEEETTSEEEEEETT--CTTSCSEEEECCSSCEEE--EEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             EEE-EeCCCCCCEEEEEeCCCeEEEEeCC--CCCCCeEEeecCCCCEEE--EEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            765 6778776 78999999999999998  4 3478899999999877  89999985 799999999999999987  


Q ss_pred             ------------CeEEEEecCCCCCeEEEEEcCCCc-eEEeeCCCe
Q 037288          453 ------------GELVFEDKFSNSVPSAVCWRTQRS-MGPQIEGKI  485 (513)
Q Consensus       453 ------------~~~~~~~~~~~~~v~~v~~~p~~~-~~~t~~~~~  485 (513)
                                  .+++..+..|...|++++|+|++. ++++++.+-
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             cccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence                        477888888999999999999965 777666553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.8e-25  Score=237.54  Aligned_cols=233  Identities=9%  Similarity=0.069  Sum_probs=185.1

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCC--cEEEEee-eCCCeEEEEEecC--CcEEEEEeCCCeEEEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETG--MASWVCR-SKSDILAQQVIHS--GNVVLCGFRNGAIVTV  323 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~--~~~~~~~-~~~~V~~l~~~~~--~~~l~sg~~dg~i~iw  323 (513)
                      ..+.+|.+.|++++|+|+++++++|+ |+.|++||+.++  .....+. |...|.+++|+|+  +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            34789999999999999999999886 556999999844  4444444 8888999999988  8999999999999999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCcccceeEe-ecCCCceEEEEEcC-----
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIWPSHTT-FMPSSISCLQSLQL-----  385 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~-----  385 (513)
                      |+++++... +..+.+|..+|.+++|+|     .+++++       |+...+........ .+...+.++ .++|     
T Consensus        83 d~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l-~~~p~~~~~  160 (753)
T 3jro_A           83 KEENGRWSQ-IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA-SWAPATIEE  160 (753)
T ss_dssp             EEETTEEEE-EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEE-EECCCC---
T ss_pred             ECCCCcccc-cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEE-EecCccccc
Confidence            999876433 568889999999999997     477776       99887754444443 445666665 6666     


Q ss_pred             --------CCCEEEEEecCCeEEEEecCCCCc--cceEEecCCCCceeEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 037288          386 --------YDQYFLASSMDGTVKLYDHRLTTR--GAVQSYEGHVNSHTRIQLGVDQS---ERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       386 --------~~~~l~s~s~dg~i~lwd~~~~~~--~~~~~~~~h~~~v~~~~~~~s~~---g~~l~sg~~Dg~v~vwd~~~  452 (513)
                              ++.+|++|+.||.|++||++....  ..+..+.+|...|.+  ++|+|+   +++|++|+.||.|++||+.+
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~--l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD--VAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE--EEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE--EEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                    589999999999999999973322  256788899999877  899999   89999999999999999998


Q ss_pred             Ce-----EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          453 GE-----LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       453 ~~-----~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ++     .+.....|...|++++|+|++.++++++.|-.
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred             CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence            74     23334457888999999999888887766543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=2.3e-24  Score=212.54  Aligned_cols=226  Identities=9%  Similarity=0.026  Sum_probs=181.3

Q ss_pred             EeccccCcEEEEEEcCC---CC--EEEEEeCCeEEEEECCCCcEEEEee------eCCCeEEEEEecC----CcEEEEEe
Q 037288          251 LVASFKCTVWTADFCTN---PS--QAVIGTNLGAAMVDMETGMASWVCR------SKSDILAQQVIHS----GNVVLCGF  315 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~---g~--~l~s~s~~~i~vwd~~~~~~~~~~~------~~~~V~~l~~~~~----~~~l~sg~  315 (513)
                      ...+|...|++++|+|+   +.  ++++++++.|++||+.+++.+..+.      |...|.+++|+|+    +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            35689999999999984   33  6667788899999999887655444      4467999999999    67999999


Q ss_pred             CCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeE--eecCCCceEEEE
Q 037288          316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHT--TFMPSSISCLQS  382 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~--~~~~~~v~~~~~  382 (513)
                      .||.|++||+.+++.   +..+.+|..+|.+++|+|    .+++++       |+...++......  ..+...+.++ .
T Consensus        93 ~dg~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~  168 (366)
T 3k26_A           93 SRGIIRIINPITMQC---IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA-D  168 (366)
T ss_dssp             TTCEEEEECTTTCCE---EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE-E
T ss_pred             CCCEEEEEEchhceE---eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE-E
Confidence            999999999998775   447889999999999987    577776       9888765432211  1355667775 7


Q ss_pred             EcCCCCEEEEEecCCeEEEEecCCCCccce----------------------------EEecCCCCceeEEEEEEcCCCC
Q 037288          383 LQLYDQYFLASSMDGTVKLYDHRLTTRGAV----------------------------QSYEGHVNSHTRIQLGVDQSER  434 (513)
Q Consensus       383 ~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~----------------------------~~~~~h~~~v~~~~~~~s~~g~  434 (513)
                      ++|++++|++++.||.|++||++  ....+                            ....+|...+.+  ++|+  ++
T Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~--~~  242 (366)
T 3k26_A          169 YDLLGEKIMSCGMDHSLKLWRIN--SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC--VRWL--GD  242 (366)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESC--SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE--EEEE--TT
T ss_pred             ECCCCCEEEEecCCCCEEEEECC--CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE--EEEc--CC
Confidence            88899999999999999999997  33222                            233458888888  6776  77


Q ss_pred             EEEEEeCCCcEEEEeCCCCeE--------------EEEecCCCCCeEEEEEcCC--CceEEeeCCCee
Q 037288          435 FVMSGGEDCKLRIWSIRSGEL--------------VFEDKFSNSVPSAVCWRTQ--RSMGPQIEGKIH  486 (513)
Q Consensus       435 ~l~sg~~Dg~v~vwd~~~~~~--------------~~~~~~~~~~v~~v~~~p~--~~~~~t~~~~~~  486 (513)
                      +|++++.||.|++||+.+++.              +..+..|...|++++|+|+  +.++++++.+-.
T Consensus       243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~  310 (366)
T 3k26_A          243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK  310 (366)
T ss_dssp             EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred             EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence            999999999999999988743              7778888999999999999  888888776543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=1.5e-24  Score=220.35  Aligned_cols=224  Identities=12%  Similarity=0.129  Sum_probs=167.2

Q ss_pred             EeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCcEEEE---eeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEE
Q 037288          251 LVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGMASWV---CRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~~~~~---~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd  324 (513)
                      ...+|...|+|++|+| ++.+||+|+. +.|+|||+.++.....   ..|.+.|++|+|+| ++++|++|+.||+|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4678899999999999 5678998865 5599999987764333   34888999999998 689999999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCC-EEEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLAS  393 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~  393 (513)
                      ++...... +.....+...+.+++|++   .+++|+       |+.....+.  ....|...|.++ .|+|++. +|++|
T Consensus       194 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--~~~~h~~~v~~v-~~~p~~~~~~~s~  269 (435)
T 4e54_B          194 FKGNILRV-FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--NLRMHKKKVTHV-ALNPCCDWFLATA  269 (435)
T ss_dssp             TTSCEEEE-EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--CSBCCSSCEEEE-EECTTCSSEEEEE
T ss_pred             ccCCceeE-EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--EEecccceEEee-eecCCCceEEEEe
Confidence            98764332 333445566788999988   566665       887543322  112345667776 6777765 78899


Q ss_pred             ecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC------Ce
Q 037288          394 SMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS------VP  466 (513)
Q Consensus       394 s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~------~v  466 (513)
                      +.|+.|++||++..... .+....+|...|..  ++|+|+|++|++|+.||.|+|||+.+++....+..|..      .+
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~--~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  347 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA--ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP  347 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEE--CCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccc--eeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence            99999999999843322 33344679998877  89999999999999999999999999988777654432      23


Q ss_pred             EEEEEcCCCceEEe
Q 037288          467 SAVCWRTQRSMGPQ  480 (513)
Q Consensus       467 ~~v~~~p~~~~~~t  480 (513)
                      ..++|+|++.+++.
T Consensus       348 ~~~~~~~~~~~~~~  361 (435)
T 4e54_B          348 IKAAWHPRYNLIVV  361 (435)
T ss_dssp             CBCEECSSSSCEEE
T ss_pred             EEEEEcCCCCEEEE
Confidence            34567776544443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=1.2e-23  Score=215.10  Aligned_cols=221  Identities=14%  Similarity=0.176  Sum_probs=180.4

Q ss_pred             eEEeccccCcE-EEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          249 MHLVASFKCTV-WTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       249 ~~~~~~h~~~V-~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ...+.+|...| .++.+  ++.++++|+. +.|++||+.+++.+..+. |.+.|.+++|++++ +|++|+.||+|++||+
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence            45688998885 66666  5678888865 559999999999887776 88889999999988 9999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCcccce---------------------eEe-
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIWPS---------------------HTT-  371 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~~~---------------------~~~-  371 (513)
                      ++++.   +..+.+|...|.+++|.+     .+++++       |+...+.....                     ... 
T Consensus       191 ~~~~~---~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          191 KKGCC---THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             TTTEE---EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             CCCcE---EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            98875   458889999999999973     577776       88876653321                     111 


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          372 FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       372 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      .+...+.   .+++++++|++++.||.|++||++  ...++..+.+|...+..  ++|+|++++|++|+.||.|++||+.
T Consensus       268 ~~~~~v~---~~~~~~~~l~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~--~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          268 GHMASVR---TVSGHGNIVVSGSYDNTLIVWDVA--QMKCLYILSGHTDRIYS--TIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             CCSSCEE---EEEEETTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEE--EEEETTTTEEEEEETTSCEEEEETT
T ss_pred             CccceEE---EEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEecCCCCCEEE--EEEcCCCCEEEEEeCCCcEEEEECC
Confidence            1223333   446789999999999999999997  55688899999999877  8899999999999999999999999


Q ss_pred             CCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          452 SGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       452 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +++++..+..|...|.+++|++.  ++++++.|
T Consensus       341 ~~~~~~~~~~h~~~v~~~~~~~~--~l~s~s~d  371 (464)
T 3v7d_B          341 NGELMYTLQGHTALVGLLRLSDK--FLVSAAAD  371 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSS--EEEEEETT
T ss_pred             CCcEEEEEeCCCCcEEEEEEcCC--EEEEEeCC
Confidence            99999999999999999999853  44444444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=7e-23  Score=205.59  Aligned_cols=223  Identities=14%  Similarity=0.147  Sum_probs=180.4

Q ss_pred             eEEeccccCc--EEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          249 MHLVASFKCT--VWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       249 ~~~~~~h~~~--V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      +....+|...  +.+++|++ +.+++++.++.|++||+.+++......  |...|.+++|+|++++|++|+.||.|++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeCCCCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            4445567655  55577765 456667788889999999998777665  577899999999999999999999999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      +.+++.   +..+.+|...|.+++|++ .+++++       |+.............+...+.++ .++|++++|++|+.|
T Consensus       163 ~~~~~~---~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          163 VESQTK---LRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL-AWRSDGLQLASGGND  238 (401)
T ss_dssp             TTTCCE---EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE-EECTTSSEEEEEETT
T ss_pred             CcCCeE---EEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE-EEcCCCCEEEEEeCC
Confidence            998875   457889999999999988 677766       88875443323333456666665 788899999999999


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEe--CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGG--EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~--~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                      +.|++||++  ...++..+.+|...+..  ++|+|++ .++++|+  .|+.|++||+.+++++..+.. ...|++++|+|
T Consensus       239 ~~v~iwd~~--~~~~~~~~~~~~~~v~~--~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~  313 (401)
T 4aez_A          239 NVVQIWDAR--SSIPKFTKTNHNAAVKA--VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSP  313 (401)
T ss_dssp             SCEEEEETT--CSSEEEEECCCSSCCCE--EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECS
T ss_pred             CeEEEccCC--CCCccEEecCCcceEEE--EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECC
Confidence            999999997  55588889999999887  8999976 4566655  799999999999999998864 56799999999


Q ss_pred             CCceEEee
Q 037288          474 QRSMGPQI  481 (513)
Q Consensus       474 ~~~~~~t~  481 (513)
                      ++..++++
T Consensus       314 ~~~~l~~~  321 (401)
T 4aez_A          314 HSKEIMST  321 (401)
T ss_dssp             SSSEEEEE
T ss_pred             CCCeEEEE
Confidence            97776664

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.7e-23  Score=210.56  Aligned_cols=260  Identities=9%  Similarity=-0.039  Sum_probs=180.7

Q ss_pred             cccccccCCCCCccccCcceeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCccc
Q 037288          164 DNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSI  243 (513)
Q Consensus       164 ~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  243 (513)
                      .+++....+.++.|+|++..+...+.=..++ .++.......|+..-.. +..                .|+...+.+.+
T Consensus        10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~-d~~~~~~l~gh~~~v~~-V~F----------------sPdg~~~~~~~   71 (588)
T 2j04_A           10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG-QPKYAKDINCNSKNLFH-VKE----------------FPLEFENKLDF   71 (588)
T ss_dssp             CSCCCSSSSCCEEECTTSCEEEECSSSEEEE-EECCCSCCSSBGGGTEE-EEE----------------ECCCCCCTTTT
T ss_pred             cHhHhhccEEEEEECCCCCEEEEEcCCceee-cccccceecCCCccEEE-EEE----------------CCCCCcceEEE
Confidence            5677778899999999987777766555555 34433333222221111 111                11112222332


Q ss_pred             ccCceeEEec-cccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCC-----CeEEEEEecCCcEEEEEeC
Q 037288          244 IRRSTMHLVA-SFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKS-----DILAQQVIHSGNVVLCGFR  316 (513)
Q Consensus       244 ~~~~~~~~~~-~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~-----~V~~l~~~~~~~~l~sg~~  316 (513)
                      ........+. .|...|.+++|+|+|++||+++. +.|++||.++  ++..+.|+.     .|.+++|+|||++|++|+.
T Consensus        72 ~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~  149 (588)
T 2j04_A           72 ELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE  149 (588)
T ss_dssp             SCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred             EeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC
Confidence            2211111122 56889999999999999998865 5599999654  555555443     4999999999999999999


Q ss_pred             CCeEEEEECCCCcccc----ccccc----cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC
Q 037288          317 NGAIVTVDVRKRQRGC----SSRAG----RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ  388 (513)
Q Consensus       317 dg~i~iwd~~~~~~~~----~~~~~----~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  388 (513)
                      ||+|++||+..+....    .+.++    .+|..+|.+++                                  |+|+| 
T Consensus       150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa----------------------------------wSPdg-  194 (588)
T 2j04_A          150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV----------------------------------WYEDV-  194 (588)
T ss_dssp             TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE----------------------------------EETTE-
T ss_pred             CCEEEEEECCCCccccccceeeeeeecccccccccEEEEE----------------------------------EcCCc-
Confidence            9999999998874200    02343    56777777754                                  45688 


Q ss_pred             EEEEEecCCeEEEEecCCCCcc---ceEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC
Q 037288          389 YFLASSMDGTVKLYDHRLTTRG---AVQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       389 ~l~s~s~dg~i~lwd~~~~~~~---~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~  464 (513)
                       +++++.|+.|++||+.  ...   ..+++ .+|...|..  ++|+  |+.|++++ |++|++||+.+++......+|.+
T Consensus       195 -Laass~D~tVrlWd~~--~~~~~~~~~tL~~~h~~~V~s--vaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~  266 (588)
T 2j04_A          195 -LVAALSNNSVFSMTVS--ASSHQPVSRMIQNASRRKITD--LKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE  266 (588)
T ss_dssp             -EEEEETTCCEEEECCC--SSSSCCCEEEEECCCSSCCCC--EEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred             -EEEEeCCCeEEEEECC--CCccccceeeecccccCcEEE--EEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence             8889999999999996  333   23567 478888877  7888  68999988 79999999999888544447899


Q ss_pred             CeEEEEE--cCCCceEEeeCCCee
Q 037288          465 VPSAVCW--RTQRSMGPQIEGKIH  486 (513)
Q Consensus       465 ~v~~v~~--~p~~~~~~t~~~~~~  486 (513)
                      .|..++|  +|++..++++..+-.
T Consensus       267 ~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          267 NFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             CCCEEEETTCSSCEEEEECSSCEE
T ss_pred             eEEEEEeeeCCCCCEEEEEcCCCC
Confidence            9999999  999877777775443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.92  E-value=9.9e-23  Score=196.90  Aligned_cols=213  Identities=12%  Similarity=0.133  Sum_probs=162.8

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCc-EEE-EeeeCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGM-ASW-VCRSKS  297 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~-~~~-~~~~~~  297 (513)
                      ..+|.+.+|++.+.            ..+..+.+|...+.++.+  ++.++++++.+. +++|+..++. .+. ...|..
T Consensus        86 s~Dg~v~iw~~~~~------------~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (318)
T 4ggc_A           86 TSSAEVQLWDVQQQ------------KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ  151 (318)
T ss_dssp             ETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             ECCCcEEEeecCCc------------eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccC
Confidence            35788888877643            235668899998887665  567888887655 8899988764 333 344788


Q ss_pred             CeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc-ccccccccCcCeEEEeeCC---eEE---EeE-------eecccC
Q 037288          298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRND---RVT---NEQ-------WFELKA  363 (513)
Q Consensus       298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~---~~~---s~~-------w~~~~~  363 (513)
                      .+.++.|++++++|++++.|+.|++||+++++... .......|...|.++.+.+   .++   +++       |+....
T Consensus       152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred             ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence            89999999999999999999999999998765432 1335667888999999988   222   222       776655


Q ss_pred             cccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC
Q 037288          364 NIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE  441 (513)
Q Consensus       364 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~  441 (513)
                      ..  .....+...+..+ .+.+++..+++++  .|+.|++||++  ...++.++.+|.+.|++  ++|+|+|++|++|+.
T Consensus       232 ~~--~~~~~~~~~v~~~-~~~~~~~~~~~~sg~~d~~i~iwd~~--~~~~~~~l~gH~~~V~~--l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          232 AC--LSAVDAHSQVCSI-LWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLS--LTMSPDGATVASAAA  304 (318)
T ss_dssp             CE--EEEEECSSCEEEE-EEETTTTEEEEEECTTTCCEEEEETT--TCCEEEEECCCSSCEEE--EEECTTSSCEEEEET
T ss_pred             cc--cccccceeeeeee-eecccccceEEEEEcCCCEEEEEECC--CCcEEEEEcCCCCCEEE--EEEcCCCCEEEEEec
Confidence            43  2334445556655 6677888777655  79999999997  56689999999999887  899999999999999


Q ss_pred             CCcEEEEeCCCCe
Q 037288          442 DCKLRIWSIRSGE  454 (513)
Q Consensus       442 Dg~v~vwd~~~~~  454 (513)
                      ||+|+|||+.+..
T Consensus       305 D~~v~iWd~~~~d  317 (318)
T 4ggc_A          305 DETLRLWRCFELD  317 (318)
T ss_dssp             TTEEEEECCSCCC
T ss_pred             CCeEEEEECCCCC
Confidence            9999999997654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.8e-22  Score=205.83  Aligned_cols=225  Identities=8%  Similarity=-0.004  Sum_probs=176.9

Q ss_pred             eccccCcEEEEEEcCCCCEE-EEEe-CCeEEEEECC--CCcEEEEe---eeCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQA-VIGT-NLGAAMVDME--TGMASWVC---RSKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l-~s~s-~~~i~vwd~~--~~~~~~~~---~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      ..+|...|++++|+|++++| ++|+ |+.|++||+.  ++..+..+   .+...|.+++|+|++++|++|+.||.|++||
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            34677789999999999986 7774 5679999999  78766665   4567899999999999999999999999999


Q ss_pred             CCCCcccc-ccccccccCcCeEEEeeCC------eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEE
Q 037288          325 VRKRQRGC-SSRAGRRHRIPYSRLQRND------RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       325 ~~~~~~~~-~~~~~~~h~~~v~~v~~~~------~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  390 (513)
                      +....... ....+.+|...|.+++|+|      .+++++       |+...+.........+...+.++ .|+ ++++|
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~-~~s-d~~~l  255 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI-CCG-KDYLL  255 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE-EEC-STTEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE-EEC-CCCEE
Confidence            98876432 2447889999999999987      366666       88877664332233466677776 677 99999


Q ss_pred             EEEecCCeEEEEecCCCCccceEEecCC-------------------------CCceeEEEEEEcCCCCEEEEEe-CCCc
Q 037288          391 LASSMDGTVKLYDHRLTTRGAVQSYEGH-------------------------VNSHTRIQLGVDQSERFVMSGG-EDCK  444 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~~~~~~~~~~~~h-------------------------~~~v~~~~~~~s~~g~~l~sg~-~Dg~  444 (513)
                      ++++.|+.|++||++  ...++..+..+                         ...+  ..++|+|++++|++++ .|+.
T Consensus       256 ~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWK--TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV--SKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             EEEESSSEEEEEETT--TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE--EEEEECSSSSEEEEEETTCSE
T ss_pred             EEEeCCCeEEEEECC--CCcEeeeecchhhhhhhhhhcccccccccccccccceEEE--EEEEEeCCCCEEEEEECCCCe
Confidence            999999999999997  44566666532                         2234  4489999999999999 8999


Q ss_pred             EEEEeC--CCC---eEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          445 LRIWSI--RSG---ELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       445 v~vwd~--~~~---~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      |++|++  .++   +.+..+..+ ..|.+++|+|+..+++....
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNK  374 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCT
T ss_pred             EEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecc
Confidence            999999  666   777778777 78999999997655555443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.3e-23  Score=204.39  Aligned_cols=187  Identities=10%  Similarity=0.063  Sum_probs=145.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC--CCEEEEEeC-CeEEEEECCCCc---EEEEeee
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN--PSQAVIGTN-LGAAMVDMETGM---ASWVCRS  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--g~~l~s~s~-~~i~vwd~~~~~---~~~~~~~  295 (513)
                      .+|.+.+|++.+...          ..+..+.+|...|.+++|+|+  +.++++++. +.|++||+.++.   ......|
T Consensus        77 ~dg~v~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  146 (379)
T 3jrp_A           77 YDGKVLIWKEENGRW----------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH  146 (379)
T ss_dssp             TTSCEEEEEEETTEE----------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred             cCCEEEEEEcCCCce----------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence            478888888764321          135667889999999999999  899998865 569999998873   3344458


Q ss_pred             CCCeEEEEEec-------------CCcEEEEEeCCCeEEEEECCCCcccc-ccccccccCcCeEEEeeCCeEEEeEeecc
Q 037288          296 KSDILAQQVIH-------------SGNVVLCGFRNGAIVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRNDRVTNEQWFEL  361 (513)
Q Consensus       296 ~~~V~~l~~~~-------------~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~s~~w~~~  361 (513)
                      ...|.+++|+|             ++.+|++|+.||.|++||++...... ....+.+|..+|.+++             
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~-------------  213 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-------------  213 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-------------
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE-------------
Confidence            88899999999             68999999999999999998765321 1345667777777754             


Q ss_pred             cCcccceeEeecCCCceEEEEEcCC---CCEEEEEecCCeEEEEecCCCCcc-ceEEe--cCCCCceeEEEEEEcCCCCE
Q 037288          362 KANIWPSHTTFMPSSISCLQSLQLY---DQYFLASSMDGTVKLYDHRLTTRG-AVQSY--EGHVNSHTRIQLGVDQSERF  435 (513)
Q Consensus       362 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~--~~h~~~v~~~~~~~s~~g~~  435 (513)
                                           |+|+   +++|++++.||.|++||++..... ....+  ..|...+..  ++|+|++++
T Consensus       214 ---------------------~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~  270 (379)
T 3jrp_A          214 ---------------------WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR--ASWSLSGNV  270 (379)
T ss_dssp             ---------------------ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE--EEECSSSCC
T ss_pred             ---------------------ECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEE--EEEcCCCCE
Confidence                                 4567   899999999999999999732212 12222  347777766  899999999


Q ss_pred             EEEEeCCCcEEEEeCCCCe
Q 037288          436 VMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       436 l~sg~~Dg~v~vwd~~~~~  454 (513)
                      |++++.||.|++|++..+.
T Consensus       271 l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          271 LALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEEESSSSEEEEEEEETT
T ss_pred             EEEecCCCcEEEEeCCCCC
Confidence            9999999999999998543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.92  E-value=8.1e-24  Score=215.00  Aligned_cols=227  Identities=13%  Similarity=0.167  Sum_probs=172.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCc-----------EEEEee-eC------------CCeEEEEEecCC
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGM-----------ASWVCR-SK------------SDILAQQVIHSG  308 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~-----------~~~~~~-~~------------~~V~~l~~~~~~  308 (513)
                      .|.+.|.+++|+|+|.+||+|+. +.|+|||+.+++           ....+. |.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            46789999999999999999865 559999998876           244443 66            779999999998


Q ss_pred             --cEEEEEeCCCeEEEEECCCCccccc------------------------------------c-ccccccCcCeEEEee
Q 037288          309 --NVVLCGFRNGAIVTVDVRKRQRGCS------------------------------------S-RAGRRHRIPYSRLQR  349 (513)
Q Consensus       309 --~~l~sg~~dg~i~iwd~~~~~~~~~------------------------------------~-~~~~~h~~~v~~v~~  349 (513)
                        ..|++|+.|+.|++||+........                                    . ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              7999999999999999876432100                                    0 114689999999999


Q ss_pred             CC---eEEEeE------eecccCc-ccce------eEeecCCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCCccc-
Q 037288          350 ND---RVTNEQ------WFELKAN-IWPS------HTTFMPSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTTRGA-  411 (513)
Q Consensus       350 ~~---~~~s~~------w~~~~~~-~~~~------~~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~~~~-  411 (513)
                      +|   .++++.      |+..... ....      ....+...+.++ .|+|++ ++|++|+.||.|++||++  .... 
T Consensus       186 ~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~~~dg~i~iwd~~--~~~~~  262 (447)
T 3dw8_B          186 NSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA-EFHPNSCNTFVYSSSKGTIRLCDMR--ASALC  262 (447)
T ss_dssp             CTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE-EECSSCTTEEEEEETTSCEEEEETT--TCSSS
T ss_pred             cCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEE-EECCCCCcEEEEEeCCCeEEEEECc--CCccc
Confidence            99   555554      8876322 1110      111345566665 788888 999999999999999998  4333 


Q ss_pred             ---eEEecCCCC------------ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecCCCCC----------
Q 037288          412 ---VQSYEGHVN------------SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELVFEDKFSNSV----------  465 (513)
Q Consensus       412 ---~~~~~~h~~------------~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~~~~~----------  465 (513)
                         +..+.+|..            .+..  ++|+|+|++|++++. +.|++||+++ ++++..+..|...          
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISD--VKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEE--EEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             cceeeEeccCCCccccccccccCceEEE--EEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence               788888876            6766  899999999999998 9999999997 8888888777532          


Q ss_pred             -----eEEEEEcCCCceEEeeCCCee
Q 037288          466 -----PSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       466 -----v~~v~~~p~~~~~~t~~~~~~  486 (513)
                           +..++|+|++.++++++.|-.
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~  365 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNF  365 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred             cccccceEEEECCCCCEEEEeccCCE
Confidence                 234999999888888776644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=4.3e-23  Score=218.30  Aligned_cols=221  Identities=13%  Similarity=0.083  Sum_probs=183.1

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCC----cEEEEe-eeCCC-eEEEEEec--CCcEEEEEeCCCeEEEEE
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETG----MASWVC-RSKSD-ILAQQVIH--SGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~----~~~~~~-~~~~~-V~~l~~~~--~~~~l~sg~~dg~i~iwd  324 (513)
                      ..|...|.+++|+|++++|++++++.|++||+.++    +....+ .|... |.+++|+|  ++++|++|+.||.|++||
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            36789999999999999999999989999999988    655555 48889 99999999  999999999999999999


Q ss_pred             CCCC------ccccccccccccCcCeEEEeeCC---eEEEeE-----------eecccCcccceeEe-ecCCCceEEEEE
Q 037288          325 VRKR------QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-----------WFELKANIWPSHTT-FMPSSISCLQSL  383 (513)
Q Consensus       325 ~~~~------~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-----------w~~~~~~~~~~~~~-~~~~~v~~~~~~  383 (513)
                      +.++      .... ...+..|..+|.+++|+|   .+++++           |+  .+.  ....+ .+...+.++ .|
T Consensus        95 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~--~~~~~~~~~~~v~~~-~~  168 (615)
T 1pgu_A           95 WTFDKESNSVEVNV-KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN--SLGEVSGHSQRINAC-HL  168 (615)
T ss_dssp             EEEEGGGTEEEEEE-EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC--EEEECCSCSSCEEEE-EE
T ss_pred             CCCCcccccccccc-cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC--cceeeecCCccEEEE-EE
Confidence            9754      2222 557888999999999999   555544           33  222  12222 234556664 78


Q ss_pred             cCCCC-EEEEEecCCeEEEEecCCCCccceEEecCCCC---ceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288          384 QLYDQ-YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN---SHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGELVFE  458 (513)
Q Consensus       384 ~~~~~-~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~---~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~~~~~  458 (513)
                      +|++. .|++++.|+.|++||+.  ....+..+.+|..   .+.+  ++|+|+ +++|++++.||.|++||+.+++.+..
T Consensus       169 ~~~~~~~l~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  244 (615)
T 1pgu_A          169 KQSRPMRSMTVGDDGSVVFYQGP--PFKFSASDRTHHKQGSFVRD--VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY  244 (615)
T ss_dssp             CSSSSCEEEEEETTTEEEEEETT--TBEEEEEECSSSCTTCCEEE--EEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             CCCCCcEEEEEeCCCcEEEEeCC--CcceeeeecccCCCCceEEE--EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence            88887 89999999999999987  5558889999998   8877  899999 99999999999999999999999999


Q ss_pred             e-c---CCCCCeEEEEEcCCCceEEeeCCC
Q 037288          459 D-K---FSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       459 ~-~---~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      + .   .|...|.+++|+ ++.++++++.+
T Consensus       245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  273 (615)
T 1pgu_A          245 IEDDQEPVQGGIFALSWL-DSQKFATVGAD  273 (615)
T ss_dssp             CCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred             ecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence            8 6   789999999999 87777776655

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.7e-23  Score=212.40  Aligned_cols=211  Identities=11%  Similarity=0.096  Sum_probs=165.6

Q ss_pred             eeEEe-ccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCC---Cc---EEEEeeeCCCeEEEEEecCCcEEEEEeCCC
Q 037288          248 TMHLV-ASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMET---GM---ASWVCRSKSDILAQQVIHSGNVVLCGFRNG  318 (513)
Q Consensus       248 ~~~~~-~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~---~~---~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg  318 (513)
                      .+..+ .+|...|++++|+| ++.+|++|+. +.|++||+.+   +.   ....+.|...|.+++|+|++++|++|+.||
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg  133 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG  133 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            35566 88999999999999 9999998865 5599999876   32   344456889999999999999999999999


Q ss_pred             eEEEEECC---CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEE-EEcCCCCEEEEEe
Q 037288          319 AIVTVDVR---KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQ-SLQLYDQYFLASS  394 (513)
Q Consensus       319 ~i~iwd~~---~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~s~s  394 (513)
                      .|++||+.   .++.   ...+..|  .+..+.|++                .   .+...+.++. .+++++.+|++++
T Consensus       134 ~i~vwd~~~~~~~~~---~~~~~~~--~i~~~~~~~----------------~---~~~~~~~~~~~~~~~~~~~l~~~~  189 (437)
T 3gre_A          134 QIIVLKVNHYQQESE---VKFLNCE--CIRKINLKN----------------F---GKNEYAVRMRAFVNEEKSLLVALT  189 (437)
T ss_dssp             EEEEEEEEEEEETTE---EEEEEEE--EEEEEEGGG----------------G---SSCCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeccccCCce---eeccccc--eeEEEEccC----------------c---ccccCceEEEEEEcCCCCEEEEEe
Confidence            99999995   3332   2233333  444544422                0   0233344432 2567899999999


Q ss_pred             cCCeEEEEecCCCCccceEEecC--CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-CCCCCeEEEEE
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEG--HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK-FSNSVPSAVCW  471 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~-~~~~~v~~v~~  471 (513)
                      .|+.|++||++  ...++..+.+  |...+.+  ++|+|++++|++|+.||.|++||+++++++..+. .|..+|++++|
T Consensus       190 ~d~~i~iwd~~--~~~~~~~~~~~~h~~~v~~--~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  265 (437)
T 3gre_A          190 NLSRVIIFDIR--TLERLQIIENSPRHGAVSS--ICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV  265 (437)
T ss_dssp             TTSEEEEEETT--TCCEEEEEECCGGGCCEEE--EEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred             CCCeEEEEeCC--CCeeeEEEccCCCCCceEE--EEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence            99999999998  5568888888  7888877  8899999999999999999999999999999886 66778999977


Q ss_pred             cC----CCceEEeeCCCee
Q 037288          472 RT----QRSMGPQIEGKIH  486 (513)
Q Consensus       472 ~p----~~~~~~t~~~~~~  486 (513)
                      +|    ++.++++++.|-.
T Consensus       266 ~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          266 CQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             CTTTCTTEEEEEEESTTEE
T ss_pred             ccccCCCccEEEEEcCCCc
Confidence            65    4668888877753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=5.6e-22  Score=198.37  Aligned_cols=234  Identities=14%  Similarity=0.122  Sum_probs=173.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccC-ceeEEeccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRR-STMHLVASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSD  298 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~  298 (513)
                      .+|.+.+|++.+............. .......+|...|.+++|+| ++.++++++ ++.|++||+.+++....+.+...
T Consensus        64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (408)
T 4a11_B           64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET  143 (408)
T ss_dssp             TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc
Confidence            4788999998865543221000000 00001246999999999999 777888876 56699999999999988889999


Q ss_pred             eEEEEEecCC---cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---e-EEEeE-------eecccCc
Q 037288          299 ILAQQVIHSG---NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---R-VTNEQ-------WFELKAN  364 (513)
Q Consensus       299 V~~l~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~-~~s~~-------w~~~~~~  364 (513)
                      +.++.|++.+   .++++|+.||.|++||+++++.   +..+.+|...|.+++|+|   . +++++       |+.+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC---SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC---CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred             eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce---eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence            9999999854   5999999999999999998875   447889999999999999   3 66666       8887654


Q ss_pred             ccceeE---------------eecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC---------------------
Q 037288          365 IWPSHT---------------TFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT---------------------  408 (513)
Q Consensus       365 ~~~~~~---------------~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~---------------------  408 (513)
                      ......               ..+...+.++ .++|++++|++++.||.|++||++...                     
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
T 4a11_B          221 GCLITLDQHNGKKSQAVESANTAHNGKVNGL-CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV  299 (408)
T ss_dssp             CCSEECCTTTTCSCCCTTTSSCSCSSCEEEE-EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred             cccccccccccccceeeccccccccCceeEE-EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence            211111               2344566665 788999999999999999999987421                     


Q ss_pred             ------------------------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288          409 ------------------------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       409 ------------------------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~  461 (513)
                                              ..++..+.+|...|..  ++|+|++++|++|+.||.|++||+.+++++.....
T Consensus       300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC--CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE--EEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred             ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE--EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence                                    1246677889998877  89999999999999999999999999988776543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1e-22  Score=207.71  Aligned_cols=217  Identities=11%  Similarity=0.025  Sum_probs=172.2

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc---EEEEeee--------------------------------------
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGM---ASWVCRS--------------------------------------  295 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~---~~~~~~~--------------------------------------  295 (513)
                      .++.+++|+++|++|++++++.|++||+.+|+   .+..+..                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            57889999999999998899999999999998   4444331                                      


Q ss_pred             -----------------CCCeEEEEEecCCcEE-EEEeCCCeEEEEECC--CCcccccccccc--ccCcCeEEEeeCC--
Q 037288          296 -----------------KSDILAQQVIHSGNVV-LCGFRNGAIVTVDVR--KRQRGCSSRAGR--RHRIPYSRLQRND--  351 (513)
Q Consensus       296 -----------------~~~V~~l~~~~~~~~l-~sg~~dg~i~iwd~~--~~~~~~~~~~~~--~h~~~v~~v~~~~--  351 (513)
                                       .+.|.+++|+|++++| ++|+.||.|++||+.  .+..   +..+.  .|...|.+++|+|  
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---LKLRKRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---EEEEEEEECSSCEEEEEECTTS
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---eeeeecccCCCCceEEEEcCCC
Confidence                             1259999999999985 899999999999998  6654   33454  6678999999998  


Q ss_pred             -eEEEeE-------eecccCccc--ceeE-eecCCCceEEEEEcCC---CCEEEEEecCCeEEEEecCCCCccceEE-ec
Q 037288          352 -RVTNEQ-------WFELKANIW--PSHT-TFMPSSISCLQSLQLY---DQYFLASSMDGTVKLYDHRLTTRGAVQS-YE  416 (513)
Q Consensus       352 -~~~s~~-------w~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~lwd~~~~~~~~~~~-~~  416 (513)
                       .+++++       |++..+...  .... ..+...+.++ .|+|+   +++|++|+.|+.|++||++  ....+.. +.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~  238 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV-HLIKDSDGHQFIITSDRDEHIKISHYP--QCFIVDKWLF  238 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE-EEEECTTSCEEEEEEETTSCEEEEEES--CTTCEEEECC
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEE-EEcCCCCCCcEEEEEcCCCcEEEEECC--CCceeeeeec
Confidence             666665       666555433  1112 2355667775 78888   9999999999999999997  4556666 56


Q ss_pred             CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-------------------------CCCCeEEEEE
Q 037288          417 GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-------------------------SNSVPSAVCW  471 (513)
Q Consensus       417 ~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-------------------------~~~~v~~v~~  471 (513)
                      +|...|..  ++|+ ++++|++|+.|+.|++||+.+++++..+..                         ....|..++|
T Consensus       239 ~h~~~v~~--~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          239 GHKHFVSS--ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CCSSCEEE--EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             CCCCceEE--EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            89998877  8888 999999999999999999999998888752                         2356899999


Q ss_pred             cCCCceEEeeC
Q 037288          472 RTQRSMGPQIE  482 (513)
Q Consensus       472 ~p~~~~~~t~~  482 (513)
                      +|++.+++++.
T Consensus       316 ~~~~~~l~~~~  326 (450)
T 2vdu_B          316 SKNLPFVAFFV  326 (450)
T ss_dssp             CSSSSEEEEEE
T ss_pred             eCCCCEEEEEE
Confidence            99976555554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1e-22  Score=224.38  Aligned_cols=223  Identities=11%  Similarity=0.019  Sum_probs=176.8

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      ....+|...|++++|+|++++||+|+. +.|+|||..+.+....+.|...|.+++|+| |++|++++.|++|++||++++
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            345689999999999999999999965 569999999888777777888899999999 889999999999999999988


Q ss_pred             ccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccccee----------EeecCCCceEEEEEcCC-C
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSH----------TTFMPSSISCLQSLQLY-D  387 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~-~  387 (513)
                      +...   .+. |...|++++|+|   .+++|+       |+...+......          ...|...|.++ .|+|+ +
T Consensus        90 ~~~~---~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl-~~sp~~~  164 (902)
T 2oaj_A           90 KVLT---TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI-QWNPRDI  164 (902)
T ss_dssp             SEEE---EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE-EEETTEE
T ss_pred             cEEE---EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE-EEccCCC
Confidence            7533   443 778999999999   677776       998876642111          11245678886 66774 5


Q ss_pred             CEEEEEecCCeEEEEecCCCCccceEEecCC------------------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGH------------------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h------------------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      ..|++|+.||.| +||++  ...++..+.+|                  ...|..  ++|+|+|++|++|+.||+|++||
T Consensus       165 ~~l~~g~~dg~v-lWd~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~--v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLV--ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ--SLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             EEEEEECSSCEE-EEETT--TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE--EEECTTSSEEEEEETTCCEEEEE
T ss_pred             CEEEEEeCCCcE-EEECC--CCceEEEEecccCCcCCCcccccccccccCCCeEE--EEEcCCCCEEEEEECCCeEEEEE
Confidence            789999999999 99997  55577777766                  355655  99999999999999999999999


Q ss_pred             CCCCeEEEE--ec---C-------------CCCCeEEEEEc----CC-CceEEeeCC
Q 037288          450 IRSGELVFE--DK---F-------------SNSVPSAVCWR----TQ-RSMGPQIEG  483 (513)
Q Consensus       450 ~~~~~~~~~--~~---~-------------~~~~v~~v~~~----p~-~~~~~t~~~  483 (513)
                      +++++++..  +.   .             +..+|++++|+    |+ ..++++++.
T Consensus       240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            999998764  21   1             24479999995    44 356666643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=2.5e-22  Score=203.80  Aligned_cols=215  Identities=16%  Similarity=0.194  Sum_probs=177.3

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      ..+|...|.++++  ++.++++|+. +.|++||+.+++....+. |...|.+++|  ++++|++|+.||.|++||+.+++
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            4567788999988  7889998864 569999999999887776 7888999998  78999999999999999999887


Q ss_pred             cccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccce-e-EeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPS-H-TTFMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      .   +..+.+|...|.+++|++ .+++++       |+...+..... . ...+...+.++..   ++++|++|+.||.|
T Consensus       205 ~---~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i  278 (435)
T 1p22_A          205 M---LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTI  278 (435)
T ss_dssp             E---EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEE
T ss_pred             E---EEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeE
Confidence            6   458889999999999999 777776       88877654422 2 2234556666533   78999999999999


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~  479 (513)
                      ++||++  ....+..+.+|...+.+  +.+  ++++|++|+.||.|++||+++++++..+..|...|.+++|.  +.+++
T Consensus       279 ~vwd~~--~~~~~~~~~~~~~~v~~--~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~  350 (435)
T 1p22_A          279 KVWNTS--TCEFVRTLNGHKRGIAC--LQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIV  350 (435)
T ss_dssp             EEEETT--TCCEEEEEECCSSCEEE--EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC--SSEEE
T ss_pred             EEEECC--cCcEEEEEcCCCCcEEE--EEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEec--CCEEE
Confidence            999997  55688899999999877  555  47899999999999999999999999999999999999994  34455


Q ss_pred             eeCCC
Q 037288          480 QIEGK  484 (513)
Q Consensus       480 t~~~~  484 (513)
                      +++.|
T Consensus       351 sg~~d  355 (435)
T 1p22_A          351 SGAYD  355 (435)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            44443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=5.8e-23  Score=206.15  Aligned_cols=220  Identities=9%  Similarity=0.052  Sum_probs=168.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCcEEEEe--e-eC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNP-SQAVIGT-NLGAAMVDMETGMASWVC--R-SK  296 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~s~s-~~~i~vwd~~~~~~~~~~--~-~~  296 (513)
                      .+|.+.+|++.+.....     .....+..+.+|...|.+++|+|++ .+|++++ |+.|++||+.+++.+..+  . |.
T Consensus       102 ~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  176 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP  176 (402)
T ss_dssp             TTSEEEEEECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred             CCCeEEEEEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence            57889999987553221     1112356688999999999999998 6888876 556999999999988777  3 78


Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc-cccCcC-eEEEeeCC---eEEEe---E-------eecc
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG-RRHRIP-YSRLQRND---RVTNE---Q-------WFEL  361 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~-v~~v~~~~---~~~s~---~-------w~~~  361 (513)
                      ..|.+++|+|++++|++|+.||.|++||+++++.   +..+ .+|... +.++.|++   .++++   +       |+..
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV---VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCce---eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence            8899999999999999999999999999998875   3366 678776 89999998   55555   2       8887


Q ss_pred             cCcc-cceeEeecCCCceEEEEEcCCCCEEEE-EecCCeEEEEecCCCCccc-eEEecC--CCCceeEEEEEEcCCCCEE
Q 037288          362 KANI-WPSHTTFMPSSISCLQSLQLYDQYFLA-SSMDGTVKLYDHRLTTRGA-VQSYEG--HVNSHTRIQLGVDQSERFV  436 (513)
Q Consensus       362 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~i~lwd~~~~~~~~-~~~~~~--h~~~v~~~~~~~s~~g~~l  436 (513)
                      .... .....+.+...+.++ .++|++++|++ |+.||.|++||+.  ...+ +..+..  |...+..  ++|+|++.++
T Consensus       254 ~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~g~~dg~i~i~d~~--~~~~~~~~l~~~~~~~~v~~--~~~sp~~~~~  328 (402)
T 2aq5_A          254 HLEEPLSLQELDTSSGVLLP-FFDPDTNIVYLCGKGDSSIRYFEIT--SEAPFLHYLSMFSSKESQRG--MGYMPKRGLE  328 (402)
T ss_dssp             BCSSCSEEEECCCCSSCEEE-EEETTTTEEEEEETTCSCEEEEEEC--SSTTCEEEEEEECCSSCCSE--EEECCGGGSC
T ss_pred             cccCCceEEeccCCCceeEE-EEcCCCCEEEEEEcCCCeEEEEEec--CCCcceEeecccccCCcccc--eEEecccccc
Confidence            7654 223333455666665 78899999875 5579999999997  3332 444544  4577766  8999999887


Q ss_pred             EEEeCCCcEEEEeCCCCeEE
Q 037288          437 MSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       437 ~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      ++  .|+.+++|++.++++.
T Consensus       329 ~s--~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          329 VN--KCEIARFYKLHERKCE  346 (402)
T ss_dssp             GG--GTEEEEEEEEETTEEE
T ss_pred             ee--cceeEEEEEcCCCcEE
Confidence            64  5679999999987643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.91  E-value=1.8e-21  Score=197.96  Aligned_cols=232  Identities=15%  Similarity=0.244  Sum_probs=186.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~  298 (513)
                      ..+|.+.+|++.+..            .+..+.+|...|++++|+  +.++++|+ |+.|++||+.+++.+..+. |...
T Consensus       136 ~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~  201 (445)
T 2ovr_B          136 SDDNTLKVWSAVTGK------------CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTST  201 (445)
T ss_dssp             ETTSCEEEEETTTCC------------EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ECCCcEEEEECCCCc------------EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc
Confidence            357888888876432            346688999999999997  56788775 5569999999998877766 7788


Q ss_pred             eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeE
Q 037288          299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHT  370 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~  370 (513)
                      |.+++|+  ++.|++|+.||.|++||+++++.   +..+.+|..+|.+++|+. .+++++       |+...+...  ..
T Consensus       202 v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~  274 (445)
T 2ovr_B          202 VRCMHLH--EKRVVSGSRDATLRVWDIETGQC---LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL--HT  274 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSEEEEEESSSCCE---EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEE--EE
T ss_pred             EEEEEec--CCEEEEEeCCCEEEEEECCCCcE---EEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEe--EE
Confidence            9999995  67899999999999999998876   447889999999999977 777776       888776533  23


Q ss_pred             ee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          371 TF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       371 ~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      +. +...+.++..   ++.++++++.||.|++||++  ...++..+.+|...+..  +.+  ++++|++|+.||.|++||
T Consensus       275 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~--~~~--~~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          275 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVE--TGNCIHTLTGHQSLTSG--MEL--KDNILVSGNADSTVKIWD  345 (445)
T ss_dssp             ECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETT--TCCEEEEECCCCSCEEE--EEE--ETTEEEEEETTSCEEEEE
T ss_pred             ecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECC--CCCEEEEEcCCcccEEE--EEE--eCCEEEEEeCCCeEEEEE
Confidence            33 4556666543   79999999999999999997  55688899999988765  444  578999999999999999


Q ss_pred             CCCCeEEEEecC---CCCCeEEEEEcCCCceEEeeCCC
Q 037288          450 IRSGELVFEDKF---SNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       450 ~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +.+++++..+..   |...|++++|+++  ++++++.|
T Consensus       346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d  381 (445)
T 2ovr_B          346 IKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDD  381 (445)
T ss_dssp             TTTCCEEEEECSTTSCSSCEEEEEECSS--EEEEEETT
T ss_pred             CCCCcEEEEEccCCCCCCCEEEEEECCC--EEEEEeCC
Confidence            999999999876   7888999999754  44444433

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=2.6e-22  Score=203.47  Aligned_cols=190  Identities=11%  Similarity=0.110  Sum_probs=146.8

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCC---cEEEEe-e
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETG---MASWVC-R  294 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~---~~~~~~-~  294 (513)
                      ..+|.+.+|++.........     ......+.+|...|.+++|+| ++.++++++ ++.|++||++++   .....+ .
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRV-----IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGE-----EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eCCCeEEEEeCCCCCCCCce-----eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            35788889988753221000     011345778999999999999 677888876 556999999987   344444 5


Q ss_pred             eCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288          295 SKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM  373 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~  373 (513)
                      |...|.+++|+|++. +|++|+.||.|++||++.... . +..+.+|...|.+++|                        
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~-~~~~~~h~~~v~~i~~------------------------  329 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-K-LHSFESHKDEIFQVQW------------------------  329 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-C-SEEEECCSSCEEEEEE------------------------
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-C-eEEeecCCCCEEEEEE------------------------
Confidence            888899999999986 899999999999999997532 1 4567778888877554                        


Q ss_pred             CCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCC------------ccceEEecCCCCceeEEEEEEcCCCC-EEEEE
Q 037288          374 PSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTT------------RGAVQSYEGHVNSHTRIQLGVDQSER-FVMSG  439 (513)
Q Consensus       374 ~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~------------~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg  439 (513)
                                +|++ .+|++++.|+.|++||++...            ...+..+.+|...+..  ++|+|++. +|+++
T Consensus       330 ----------sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~~p~~~~~l~s~  397 (430)
T 2xyi_A          330 ----------SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD--FSWNPNEPWIICSV  397 (430)
T ss_dssp             ----------CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE--EEECSSSTTEEEEE
T ss_pred             ----------CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE--EEECCCCCCEEEEE
Confidence                      4566 579999999999999997311            1456777889988877  89999999 89999


Q ss_pred             eCCCcEEEEeCCCC
Q 037288          440 GEDCKLRIWSIRSG  453 (513)
Q Consensus       440 ~~Dg~v~vwd~~~~  453 (513)
                      +.||.|+||++...
T Consensus       398 s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          398 SEDNIMQVWQMAEN  411 (430)
T ss_dssp             ETTSEEEEEEECHH
T ss_pred             ECCCCEEEeEcccc
Confidence            99999999998654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=3.9e-22  Score=190.05  Aligned_cols=162  Identities=8%  Similarity=0.004  Sum_probs=122.1

Q ss_pred             eEEeccccCcEEEEEEcC---CCCEEEEEe-CCeEEEEECCCCcEEEEee-eC---CCeEEEEEecCCcEE---------
Q 037288          249 MHLVASFKCTVWTADFCT---NPSQAVIGT-NLGAAMVDMETGMASWVCR-SK---SDILAQQVIHSGNVV---------  311 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~---~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~---~~V~~l~~~~~~~~l---------  311 (513)
                      +..+.+|...+..++|++   ++.+|++|+ |++|+|||+.+|+++..+. |+   ..|.+++|+|+|.++         
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence            455778999999999999   779999986 5569999999999888886 33   357888999999876         


Q ss_pred             ---EEEeCCCeEEEEECCCCcccccccc---ccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC
Q 037288          312 ---LCGFRNGAIVTVDVRKRQRGCSSRA---GRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL  385 (513)
Q Consensus       312 ---~sg~~dg~i~iwd~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~  385 (513)
                         ++|+.|++|++||..+++... +..   -.+|...+.                                    ..+.
T Consensus       251 w~laSGs~D~tIklWd~~tgk~l~-v~~~~~p~Gh~~~~l------------------------------------sg~~  293 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLSVG-VMLYCLPPGQAGRFL------------------------------------EGDV  293 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEE-EEEECCCTTCCCCEE------------------------------------EEEE
T ss_pred             ceeeccCCCcEEEEEECCCCEEEE-EEEeeccCCCcceeE------------------------------------cccc
Confidence               678899999999998876532 000   023332221                                    1122


Q ss_pred             CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       386 ~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      ++.++++++.|++|+|||+.  ...++.++.+|...+.. .++|+|||++|++|+.|++|+|||+
T Consensus       294 sg~~lASgS~DgTIkIWDl~--tGk~l~tL~gH~~~vvs-~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 KDHCAAAILTSGTIAIWDLL--LGQCTALLPPVSDQHWS-FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTEEEEEETTSCEEEEETT--TCSEEEEECCC--CCCC-EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECC--CCcEEEEecCCCCCeEE-EEEECCCCCEEEEEECCCcEEEecC
Confidence            37789999999999999997  56689999999876542 2789999999999999999999995

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.90  E-value=1.2e-21  Score=192.87  Aligned_cols=229  Identities=11%  Similarity=0.097  Sum_probs=172.4

Q ss_pred             ceeEEeccccCcEEEEEEcCC---CCEEEEEeC-CeEEEEECCC-CcEE-E-EeeeCCCeEEEEEecCCcEEEEEeCCCe
Q 037288          247 STMHLVASFKCTVWTADFCTN---PSQAVIGTN-LGAAMVDMET-GMAS-W-VCRSKSDILAQQVIHSGNVVLCGFRNGA  319 (513)
Q Consensus       247 ~~~~~~~~h~~~V~~~~~s~~---g~~l~s~s~-~~i~vwd~~~-~~~~-~-~~~~~~~V~~l~~~~~~~~l~sg~~dg~  319 (513)
                      ..+..+.+|...|++++|+|+   |.+|++|+. +.|++||+.+ +... . ...|...|.+++|+|++++|++|+.||.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            346678899999999999998   689998865 5699999997 5543 3 3348889999999999999999999999


Q ss_pred             EEEEECCCCccccccccccccCcCeEEEee--CC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCC
Q 037288          320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQR--ND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYD  387 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~--~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  387 (513)
                      |++||+++.+.    ..+.+|..+|.+++|  ++   .+++++       |+...++.  ...+..+..+.++..   ..
T Consensus       110 v~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~---~~  180 (368)
T 3mmy_A          110 AKMWDLSSNQA----IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--MMVLQLPERCYCADV---IY  180 (368)
T ss_dssp             EEEEETTTTEE----EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--SEEEECSSCEEEEEE---ET
T ss_pred             EEEEEcCCCCc----eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--EEEEecCCCceEEEe---cC
Confidence            99999998764    346789999999999  66   577776       88887764  345555555555433   35


Q ss_pred             CEEEEEecCCeEEEEecCCCCcc-ceEEe-cCCCCceeEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCC---eEEEEec
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRG-AVQSY-EGHVNSHTRIQLGVDQSE--RFVMSGGEDCKLRIWSIRSG---ELVFEDK  460 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~-~~~~~-~~h~~~v~~~~~~~s~~g--~~l~sg~~Dg~v~vwd~~~~---~~~~~~~  460 (513)
                      ..+++++.++.+++||++  ... ....+ ..+.....++.+..+...  ..+++|+.||.|++||+...   +.+..+.
T Consensus       181 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLE--NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             TEEEEEEGGGCEEEEECS--SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             CeeEEEeCCCcEEEEEec--cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence            688999999999999997  332 22222 223344445334433322  23999999999999999987   5666676


Q ss_pred             CCCC------------CeEEEEEcCCCceEEeeCCCee
Q 037288          461 FSNS------------VPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       461 ~~~~------------~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .|..            .|++++|+|++.++++++.|-.
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~  296 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR  296 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC
T ss_pred             eeecccccccccccccceEEEEEecCCCEEEEEccCCe
Confidence            6654            7999999999877777766543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.90  E-value=9.4e-22  Score=187.43  Aligned_cols=198  Identities=10%  Similarity=-0.049  Sum_probs=134.8

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEe---CCeEEEEEC-CCCcEEEEee-eCCCeEEEEEec---CCcEEEEEeCCCeEEEEE
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGT---NLGAAMVDM-ETGMASWVCR-SKSDILAQQVIH---SGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s---~~~i~vwd~-~~~~~~~~~~-~~~~V~~l~~~~---~~~~l~sg~~dg~i~iwd  324 (513)
                      .+|...|+.+   ++++++.++.   ++.|++|++ .+|+.+..+. |...+..++|++   ++.+|++|+.|++|+|||
T Consensus       133 ~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWD  209 (356)
T 2w18_A          133 SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWN  209 (356)
T ss_dssp             EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEE
Confidence            4566667665   5777777764   777999999 4477655444 777799999999   679999999999999999


Q ss_pred             CCCCccccccccccccCc---CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-CCEEEEEecCCeEE
Q 037288          325 VRKRQRGCSSRAGRRHRI---PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-DQYFLASSMDGTVK  400 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~  400 (513)
                      +.+++...   ++.+|..   .+.+++|+|                       +....+....+. ...+++|+.|++|+
T Consensus       210 l~TGk~l~---tL~g~~~~v~~v~~vafSp-----------------------dG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          210 LKTGQLLK---KMHIDDSYQASVCHKAYSE-----------------------MGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             TTTCCEEE---EEECCC---CCCEEEEEEE-----------------------TTEEEEEEC------------CCEEEE
T ss_pred             CCCCcEEE---EEcCCCcceeeeEEEEECC-----------------------CCCEEEEeccCCCcceeeccCCCcEEE
Confidence            99988643   5655433   344444433                       011111111111 11357889999999


Q ss_pred             EEecCCCCccceEEe-----cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCC
Q 037288          401 LYDHRLTTRGAVQSY-----EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQ  474 (513)
Q Consensus       401 lwd~~~~~~~~~~~~-----~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~  474 (513)
                      +||..  ....+..+     .+|....  +..++  ++.++++|+.|++|+|||+.+++++.++.+|... +..++|+|+
T Consensus       264 lWd~~--tgk~l~v~~~~~p~Gh~~~~--lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          264 VINPK--TTLSVGVMLYCLPPGQAGRF--LEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             EEETT--TTEEEEEEEECCCTTCCCCE--EEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             EEECC--CCEEEEEEEeeccCCCccee--Ecccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence            99986  44455444     4676653  22343  3889999999999999999999999999877654 456999999


Q ss_pred             CceEEeeCCCe
Q 037288          475 RSMGPQIEGKI  485 (513)
Q Consensus       475 ~~~~~t~~~~~  485 (513)
                      +.++++++.|-
T Consensus       338 G~~LaSGS~D~  348 (356)
T 2w18_A          338 DSHLLAGQKDG  348 (356)
T ss_dssp             SSEEEEECTTS
T ss_pred             CCEEEEEECCC
Confidence            99999888774

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-21  Score=198.86  Aligned_cols=275  Identities=11%  Similarity=0.030  Sum_probs=181.2

Q ss_pred             eCCCCceeeeeEEeccccCeEEEEEeecccccc------cceeEEeeeccccccccccccccCCCCCccccCcce---ee
Q 037288          115 QTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHA------HDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKAS---IL  185 (513)
Q Consensus       115 ~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~---~~  185 (513)
                      .+|+|+    ++++++.|++|+  +. +..+..      ...+.+.|+..   .         -.-..|+.++..   +.
T Consensus        23 ~SpDG~----~iASas~D~TV~--d~-~~~~~l~gh~~~v~~V~FsPdg~---~---------~~~~~~~~~~~~~~~~~   83 (588)
T 2j04_A           23 WARDGT----LYLTTFPDISIG--QP-KYAKDINCNSKNLFHVKEFPLEF---E---------NKLDFELAQQNGLLNSQ   83 (588)
T ss_dssp             ECTTSC----EEEECSSSEEEE--EE-CCCSCCSSBGGGTEEEEEECCCC---C---------CTTTTSCCCSSCSSTTS
T ss_pred             ECCCCC----EEEEEcCCceee--cc-cccceecCCCccEEEEEECCCCC---c---------ceEEEEeCCCceEeecC
Confidence            678876    599999999999  42 222211      11344444330   0         011122222111   11


Q ss_pred             ecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccC-----cEE
Q 037288          186 MPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKC-----TVW  260 (513)
Q Consensus       186 ~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~  260 (513)
                      ..+.|.++.+++.....+               .+..+|.+.+|+...              .+..+. |..     .|.
T Consensus        84 ~~~~V~~vawSPdG~~LA---------------s~s~dg~V~iwd~~~--------------~l~~l~-~~~~~~~~sv~  133 (588)
T 2j04_A           84 PVCYPRVCKPSPIDDWMA---------------VLSNNGNVSVFKDNK--------------MLTNLD-SKGNLSSRTYH  133 (588)
T ss_dssp             CSCCEEEEEECSSSSCEE---------------EEETTSCEEEEETTE--------------EEEECC-CSSCSTTTCEE
T ss_pred             CCCcEEEEEECCCCCEEE---------------EEeCCCcEEEEeCCc--------------eeeecc-CCCccccccEE
Confidence            245577777776553222               233567777777431              233344 554     599


Q ss_pred             EEEEcCCCCEEEEEeC-CeEEEEECCCCc-------EEEEe-----eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          261 TADFCTNPSQAVIGTN-LGAAMVDMETGM-------ASWVC-----RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~-~~i~vwd~~~~~-------~~~~~-----~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      +++|||||++||+|++ ++|++||+.++.       .+..+     .|.+.|.+++|+|||  +++++.|++|++||+..
T Consensus       134 svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          134 CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence            9999999999999975 559999999885       24443     256789999999999  78888999999999987


Q ss_pred             Cccccccccc-cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          328 RQRGCSSRAG-RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       328 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      .........+ .+|...|.+++                                  |+  ++.||+++ ++.|++||+. 
T Consensus       212 ~~~~~~~~tL~~~h~~~V~sva----------------------------------Fs--g~~LASa~-~~tIkLWd~~-  253 (588)
T 2j04_A          212 SSHQPVSRMIQNASRRKITDLK----------------------------------IV--DYKVVLTC-PGYVHKIDLK-  253 (588)
T ss_dssp             SSSCCCEEEEECCCSSCCCCEE----------------------------------EE--TTEEEEEC-SSEEEEEETT-
T ss_pred             CccccceeeecccccCcEEEEE----------------------------------EE--CCEEEEEe-CCeEEEEECC-
Confidence            7632102234 36666666644                                  34  58899887 6999999985 


Q ss_pred             CCccceEEec-CCCCceeEEEEEE--cCCCCEEEEEeCCCcEEEEeCCCCe-----------------------EEEEec
Q 037288          407 TTRGAVQSYE-GHVNSHTRIQLGV--DQSERFVMSGGEDCKLRIWSIRSGE-----------------------LVFEDK  460 (513)
Q Consensus       407 ~~~~~~~~~~-~h~~~v~~~~~~~--s~~g~~l~sg~~Dg~v~vwd~~~~~-----------------------~~~~~~  460 (513)
                        .+....+. +|.+.+..  +.|  +|++..|+++++||+ ++|....-.                       .+..+.
T Consensus       254 --~~~~~~~~~gh~~~V~~--va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~  328 (588)
T 2j04_A          254 --NYSISSLKTGSLENFHI--IPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE  328 (588)
T ss_dssp             --TTEEEEEECSCCSCCCE--EEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC
T ss_pred             --CCeEEEEEcCCCceEEE--EEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec
Confidence              44332333 89999888  899  999999999999999 999874211                       111111


Q ss_pred             CCCCCeEEEEEcCCCceEEeeCCC
Q 037288          461 FSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       461 ~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      . ...|.+++|+|++.++|+...=
T Consensus       329 ~-~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          329 T-TLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             C-EEEEEEEEECTTSSEEEEEEEE
T ss_pred             c-ceEEEEEEECCCCCEEEEEEec
Confidence            1 2348999999999877766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.88  E-value=3e-20  Score=187.16  Aligned_cols=223  Identities=11%  Similarity=0.040  Sum_probs=170.6

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCCe
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      +.+.+|++...             ....+.+|...|.+++|+|+|+.|++++.+    .|++||+.+++...+..+...+
T Consensus       159 ~~i~i~d~~g~-------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~  225 (415)
T 2hqs_A          159 YELRVSDYDGY-------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN  225 (415)
T ss_dssp             EEEEEEETTSC-------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCE
T ss_pred             ceEEEEcCCCC-------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcc
Confidence            67777876521             134577899999999999999999987643    6999999999988777788889


Q ss_pred             EEEEEecCCcEEE-EEeCCCe--EEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE----------eecccC
Q 037288          300 LAQQVIHSGNVVL-CGFRNGA--IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ----------WFELKA  363 (513)
Q Consensus       300 ~~l~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~----------w~~~~~  363 (513)
                      .+++|+|||+.|+ +++.|+.  |++||+.+++    ...+..|...+.++.|+|   .++.++          |+...+
T Consensus       226 ~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          226 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             cCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence            9999999998776 6766654  9999998775    346778889999999999   455444          444444


Q ss_pred             cccceeEee-cCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE
Q 037288          364 NIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG  439 (513)
Q Consensus       364 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg  439 (513)
                      ..   ..+. +...+.+ ..|+|+|++|++++.+   ..|++||+.   .+....+..|. .+..  ++|+|+|++|+++
T Consensus       302 ~~---~~l~~~~~~~~~-~~~spdG~~l~~~~~~~g~~~i~~~d~~---~~~~~~l~~~~-~~~~--~~~spdg~~l~~~  371 (415)
T 2hqs_A          302 AP---QRITWEGSQNQD-ADVSSDGKFMVMVSSNGGQQHIAKQDLA---TGGVQVLSSTF-LDET--PSLAPNGTMVIYS  371 (415)
T ss_dssp             CC---EECCCSSSEEEE-EEECTTSSEEEEEEECSSCEEEEEEETT---TCCEEECCCSS-SCEE--EEECTTSSEEEEE
T ss_pred             CE---EEEecCCCcccC-eEECCCCCEEEEEECcCCceEEEEEECC---CCCEEEecCCC-CcCC--eEEcCCCCEEEEE
Confidence            32   1222 2233333 5889999999988875   589999995   33345566664 4444  8999999999998


Q ss_pred             eCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          440 GEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       440 ~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      +.|+   .|++||+. +.....+..+.+.|.+++|+|.
T Consensus       372 s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          372 SSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             EEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred             EcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence            8877   79999987 5556778888889999999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.88  E-value=6.1e-21  Score=188.23  Aligned_cols=205  Identities=9%  Similarity=0.047  Sum_probs=146.1

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCC-cEEEEeeeCCCeEE
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETG-MASWVCRSKSDILA  301 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~-~~~~~~~~~~~V~~  301 (513)
                      ++.+.+|++.+...            +..+ .|...|.+++++++  .++++.++.|++||+.++ +.+..+..  ....
T Consensus        80 d~~v~iWd~~~~~~------------~~~~-~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~  142 (355)
T 3vu4_A           80 KEVVHIWDDVKKQD------------VSRI-KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIR--FGGV  142 (355)
T ss_dssp             TTEEEEEETTTTEE------------EEEE-ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCCEE--EEEE
T ss_pred             ccEEEEEECCCCcE------------EEEE-ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEecc--CCce
Confidence            45777887664322            2333 36679999999876  466677889999999988 54444443  4445


Q ss_pred             EEEecCCcEEEE--EeCCCeEEEEECCCCcccc------------c-cccccccCcCeEEEeeCCeEEEeEeecccCccc
Q 037288          302 QQVIHSGNVVLC--GFRNGAIVTVDVRKRQRGC------------S-SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIW  366 (513)
Q Consensus       302 l~~~~~~~~l~s--g~~dg~i~iwd~~~~~~~~------------~-~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~  366 (513)
                      +++++  ..++.  |+.||.|++||++++....            . +..+.+|..+|.++                   
T Consensus       143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~-------------------  201 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV-------------------  201 (355)
T ss_dssp             EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE-------------------
T ss_pred             EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE-------------------
Confidence            56666  45555  6899999999998754100            0 33567777777774                   


Q ss_pred             ceeEeecCCCceEEEEEcCCCCEEEEEecCCe-EEEEecCCCCccceEEec-C-CCCceeEEEEEEcCCCCEEEEEeCCC
Q 037288          367 PSHTTFMPSSISCLQSLQLYDQYFLASSMDGT-VKLYDHRLTTRGAVQSYE-G-HVNSHTRIQLGVDQSERFVMSGGEDC  443 (513)
Q Consensus       367 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-i~lwd~~~~~~~~~~~~~-~-h~~~v~~~~~~~s~~g~~l~sg~~Dg  443 (513)
                                     .|+|++++|++|+.|++ |++||++  ...++.++. + |...|..  ++|+|+|++|++|+.|+
T Consensus       202 ---------------~~s~~g~~l~s~s~d~~~v~iwd~~--~~~~~~~~~~g~h~~~v~~--~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          202 ---------------RLNRKSDMVATCSQDGTIIRVFKTE--DGVLVREFRRGLDRADVVD--MKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             ---------------EECTTSSEEEEEETTCSEEEEEETT--TCCEEEEEECTTCCSCEEE--EEECTTSCEEEEEETTC
T ss_pred             ---------------EECCCCCEEEEEeCCCCEEEEEECC--CCcEEEEEEcCCCCCcEEE--EEECCCCCEEEEEECCC
Confidence                           55679999999999998 9999997  556888887 5 9988877  89999999999999999


Q ss_pred             cEEEEeCCCCeEE--EEe---------------------cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          444 KLRIWSIRSGELV--FED---------------------KFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       444 ~v~vwd~~~~~~~--~~~---------------------~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +|++||+..+...  ..+                     .........++|++++..++....|
T Consensus       263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d  326 (355)
T 3vu4_A          263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT  326 (355)
T ss_dssp             EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred             EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence            9999999765311  111                     0112234679999997666655544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.7e-21  Score=211.41  Aligned_cols=217  Identities=12%  Similarity=0.120  Sum_probs=170.2

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC--CCEEEEEeC-CeEEEEECCCCc--EEEEe-ee
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN--PSQAVIGTN-LGAAMVDMETGM--ASWVC-RS  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~--g~~l~s~s~-~~i~vwd~~~~~--~~~~~-~~  295 (513)
                      .+|.+.+|++....          ...+..+.+|...|++++|+++  +.++++|+. +.|++||+.+++  ....+ .|
T Consensus        29 ~dg~I~vwd~~~~~----------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h   98 (753)
T 3jro_A           29 SDKTIKIFEVEGET----------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH   98 (753)
T ss_dssp             TTTEEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred             CCCcEEEEecCCCC----------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC
Confidence            47888888876221          1235668899999999999987  899998865 559999999986  33333 38


Q ss_pred             CCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----------------eEEEeE
Q 037288          296 KSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----------------RVTNEQ  357 (513)
Q Consensus       296 ~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----------------~~~s~~  357 (513)
                      ...|.+++|+|+  ++++++|+.||.|++||++...... ...+.+|...|.++.|+|                .+++++
T Consensus        99 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs  177 (753)
T 3jro_A           99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG  177 (753)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC-CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE
T ss_pred             CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc-eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE
Confidence            888999999999  9999999999999999999875544 456789999999999986                367776


Q ss_pred             -------eecccCccc--ceeEe-ecCCCceEEEEEcCC---CCEEEEEecCCeEEEEecCCCCcc---ceEEecCCCCc
Q 037288          358 -------WFELKANIW--PSHTT-FMPSSISCLQSLQLY---DQYFLASSMDGTVKLYDHRLTTRG---AVQSYEGHVNS  421 (513)
Q Consensus       358 -------w~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~---~~~l~s~s~dg~i~lwd~~~~~~~---~~~~~~~h~~~  421 (513)
                             |+...+...  ....+ .|...+.++ .++|+   +++|++++.||.|++||++.....   .+....+|...
T Consensus       178 ~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l-~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  256 (753)
T 3jro_A          178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV-AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV  256 (753)
T ss_dssp             TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE-EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC
T ss_pred             CCCeEEEEeccCCcccceeeeeecCCCCcEEEE-EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc
Confidence                   888766432  22233 345566665 78888   899999999999999999743211   23334557888


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          422 HTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       422 v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      +..  ++|+|+|++|++|+.||.|++|++.+
T Consensus       257 v~~--l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          257 LWR--ASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCC--EEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             eEE--EEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            777  89999999999999999999999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.88  E-value=1.4e-19  Score=180.42  Aligned_cols=206  Identities=5%  Similarity=0.004  Sum_probs=154.9

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eC-CeEEEEECCCCcEEEEeeeCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TN-LGAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~-~~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      .++.+.+|++.+...            +..+..+ ..+.+++|+|++++++++ ++ +.|++||+.+++.+..+.+...+
T Consensus        52 ~d~~i~v~d~~~~~~------------~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  118 (391)
T 1l0q_A           52 HSNDVSIIDTATNNV------------IATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP  118 (391)
T ss_dssp             GGTEEEEEETTTTEE------------EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCCeEEEEECCCCeE------------EEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCc
Confidence            356777777653321            2333333 399999999999987644 44 67999999999988888888889


Q ss_pred             EEEEEecCCcEE-EEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCce
Q 037288          300 LAQQVIHSGNVV-LCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSIS  378 (513)
Q Consensus       300 ~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~  378 (513)
                      .+++|+|+++.| ++++.|+.|++||+.+++...   .+..|                                  ..+.
T Consensus       119 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~~~----------------------------------~~~~  161 (391)
T 1l0q_A          119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN---TVSVG----------------------------------RSPK  161 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEECC----------------------------------SSEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEecC----------------------------------CCcc
Confidence            999999999866 788889999999998876432   22222                                  2222


Q ss_pred             EEEEEcCCCCEE-EEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCe
Q 037288          379 CLQSLQLYDQYF-LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIRSGE  454 (513)
Q Consensus       379 ~~~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~~~~  454 (513)
                      + +.++|++++| ++++.|+.|++||++  ....+..+. +...+..  ++|+|++++|++++   .|+.|++||+.+++
T Consensus       162 ~-~~~~~dg~~l~~~~~~~~~v~~~d~~--~~~~~~~~~-~~~~~~~--~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          162 G-IAVTPDGTKVYVANFDSMSISVIDTV--TNSVIDTVK-VEAAPSG--IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             E-EEECTTSSEEEEEETTTTEEEEEETT--TTEEEEEEE-CSSEEEE--EEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             e-EEECCCCCEEEEEeCCCCEEEEEECC--CCeEEEEEe-cCCCccc--eEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            2 4678899877 567789999999997  444555555 4445544  89999999999888   68999999999999


Q ss_pred             EEEEecCCCCCeEEEEEcCCCc-eEEeeCCC
Q 037288          455 LVFEDKFSNSVPSAVCWRTQRS-MGPQIEGK  484 (513)
Q Consensus       455 ~~~~~~~~~~~v~~v~~~p~~~-~~~t~~~~  484 (513)
                      .+..+..+. .+.+++|+|++. ++++++.+
T Consensus       236 ~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d  265 (391)
T 1l0q_A          236 ITARIPVGP-DPAGIAVTPDGKKVYVALSFX  265 (391)
T ss_dssp             EEEEEECCS-SEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEecCC-CccEEEEccCCCEEEEEcCCC
Confidence            998887755 478999999965 54665544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1e-21  Score=192.69  Aligned_cols=205  Identities=9%  Similarity=0.018  Sum_probs=149.8

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECC---------CCcE
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDME---------TGMA  289 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~---------~~~~  289 (513)
                      +..+|.+.+|++.+....            ..+.  ...|.++.|+|+   +++++ |++|++|+..         +++.
T Consensus        54 g~~Dg~v~iwd~~~~~~~------------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           54 RCEDGALHFTQLKDSKTI------------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             EEETTEEEEEEESSSSCE------------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             ECCCCcEEEEECCCCcEE------------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            346889999998754332            1122  456778888887   66664 5568998655         5554


Q ss_pred             EEEee--eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccc-cccCcCeEEEeeCCeEEEeEeecccCc
Q 037288          290 SWVCR--SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG-RRHRIPYSRLQRNDRVTNEQWFELKAN  364 (513)
Q Consensus       290 ~~~~~--~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~s~~w~~~~~~  364 (513)
                      +..+.  |...|.+++|+|  ++++|++|+.||+|++||+++++...   .. ..|...|.+                  
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~~i~~------------------  175 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI---VHSAKSDVEYSS------------------  175 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE---EECCCSSCCCCE------------------
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE---EEecCCCCceEE------------------
Confidence            44433  557799999999  99999999999999999999876522   22 122333444                  


Q ss_pred             ccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce-EEecC-CCCceeEEEEEEcCCCCEEEEEeCC
Q 037288          365 IWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV-QSYEG-HVNSHTRIQLGVDQSERFVMSGGED  442 (513)
Q Consensus       365 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~-~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~D  442 (513)
                                      +.|+|++.+|++|+.||.|++||++  ....+ ..+.+ |...|..  ++|+|+|.+|++++ |
T Consensus       176 ----------------~~~~pdg~~lasg~~dg~i~iwd~~--~~~~~~~~~~~~h~~~v~~--l~fs~~g~~l~s~~-~  234 (343)
T 3lrv_A          176 ----------------GVLHKDSLLLALYSPDGILDVYNLS--SPDQASSRFPVDEEAKIKE--VKFADNGYWMVVEC-D  234 (343)
T ss_dssp             ----------------EEECTTSCEEEEECTTSCEEEEESS--CTTSCCEECCCCTTSCEEE--EEECTTSSEEEEEE-S
T ss_pred             ----------------EEECCCCCEEEEEcCCCEEEEEECC--CCCCCccEEeccCCCCEEE--EEEeCCCCEEEEEe-C
Confidence                            3667899999999999999999998  55555 78888 9999877  89999999999999 5


Q ss_pred             CcEEEEeCCCCeEEEEecC---CCCCe--EEEEEcCCCceEEeeCC
Q 037288          443 CKLRIWSIRSGELVFEDKF---SNSVP--SAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       443 g~v~vwd~~~~~~~~~~~~---~~~~v--~~v~~~p~~~~~~t~~~  483 (513)
                      +.|++||+++++.+..+..   +...+  .+++|+|++.++++++.
T Consensus       235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence            5999999999887655432   33333  36999999888887443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=2.9e-19  Score=180.69  Aligned_cols=240  Identities=8%  Similarity=-0.030  Sum_probs=175.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .++.+.+|++.+.... ...      ....+.+|...|++++|++++.++++++ ++.|++||+.+++.+..+. +...+
T Consensus       142 ~~~~i~~~d~~~g~~~-~~~------~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~  214 (433)
T 3bws_A          142 EDEGMDVLDINSGQTV-RLS------PPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS  214 (433)
T ss_dssp             TSSSEEEEETTTCCEE-EEC------CCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred             CCCeEEEEECCCCeEe-eec------CcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence            3466888877643322 000      0112568899999999999999999885 4679999999998877776 66779


Q ss_pred             EEEEEecCCcEEE-EEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE---------------eec
Q 037288          300 LAQQVIHSGNVVL-CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ---------------WFE  360 (513)
Q Consensus       300 ~~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~---------------w~~  360 (513)
                      .+++|+|+++.++ +++.|+.|++||+++++...   .+..+ ..+.+++|+|   .+++++               |+.
T Consensus       215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~---~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          215 KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR---KTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE---ECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE---EecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            9999999998775 55589999999999876532   44443 4589999998   444433               666


Q ss_pred             ccCcccceeEeecCCCceEEEEEcCCCCEE-EEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE
Q 037288          361 LKANIWPSHTTFMPSSISCLQSLQLYDQYF-LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG  439 (513)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg  439 (513)
                      ..++..  ..+.+...+.++ .++|+++.+ ++++.|+.|++||+.  ....+..+. +...+..  ++|+|+|++|+++
T Consensus       291 ~~~~~~--~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~v~v~d~~--~~~~~~~~~-~~~~~~~--~~~s~dg~~l~~~  362 (433)
T 3bws_A          291 DKEKLI--DTIGPPGNKRHI-VSGNTENKIYVSDMCCSKIEVYDLK--EKKVQKSIP-VFDKPNT--IALSPDGKYLYVS  362 (433)
T ss_dssp             TTTEEE--EEEEEEECEEEE-EECSSTTEEEEEETTTTEEEEEETT--TTEEEEEEE-CSSSEEE--EEECTTSSEEEEE
T ss_pred             CCCcEE--eeccCCCCcceE-EECCCCCEEEEEecCCCEEEEEECC--CCcEEEEec-CCCCCCe--EEEcCCCCEEEEE
Confidence            555432  233334455554 778898754 666889999999996  444666665 5555555  8999999999888


Q ss_pred             eC---------------CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          440 GE---------------DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       440 ~~---------------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      +.               ||.|++||+.+++.+..+.. ...+.+++|+|++..++++
T Consensus       363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEE
T ss_pred             ecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEE
Confidence            77               57999999999999988876 4568999999997655544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=9.3e-21  Score=189.59  Aligned_cols=259  Identities=9%  Similarity=0.005  Sum_probs=157.3

Q ss_pred             eeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCC
Q 037288          121 FRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHP  200 (513)
Q Consensus       121 ~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~  200 (513)
                      ....+|++|+.|+.|+||++.......   ...        +.....+...++++.|+|.....                
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~---~~~--------~~~~~gH~~~v~~v~~~p~~~~~----------------  151 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIIT---QHV--------LGGKSGHHNFVNDIDIADVYSAD----------------  151 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEE---EEE--------ECTTTSCSSCEEEEEEEEEECTT----------------
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccce---eee--------ecccCCCCCceEEEEEccccccc----------------
Confidence            345689999999999999985543110   000        00222233345566665531100                


Q ss_pred             ccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEEe-CCe
Q 037288          201 SCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIGT-NLG  278 (513)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~  278 (513)
                           .+...+.+    .++..++.+.+|++.+.            ..+..+.+|...|.+++|+|++. +|++|+ |++
T Consensus       152 -----~~~d~~~l----as~s~D~tv~~Wd~~~~------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          152 -----NRLAEQVI----ASVGDDCTLIIWRLTDE------------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             -----CSEEEEEE----EEEETTSEEEEEEEETT------------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             -----cCCCCCEE----EEEECCCeEEEEECCCC------------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence                 00001121    12335778888877532            23456788999999999999875 788776 456


Q ss_pred             EEEEECCCCcEEEEe--------------------------eeCCCeEEEEEe-cCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          279 AAMVDMETGMASWVC--------------------------RSKSDILAQQVI-HSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       279 i~vwd~~~~~~~~~~--------------------------~~~~~V~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      |++||+.+++.....                          .|...|.++.|+ +++..|++++.|+++++||+...+. 
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-  289 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-  289 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-
Confidence            999999987543221                          245668899987 7999999999999999999988765 


Q ss_pred             cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCCcc
Q 037288          332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTTRG  410 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~~~  410 (513)
                        ...+..|...+..+.+.+               ...............++++.+ .++++|+.||.|++||+.  ...
T Consensus       290 --~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~--~~~  350 (393)
T 4gq1_A          290 --YNEISDSTMKLGPKNLLP---------------NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY--EKD  350 (393)
T ss_dssp             ----------------CCSC---------------SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT--CTT
T ss_pred             --CceEeeecCccccEEEcc---------------ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC--CCc
Confidence              347778888887777755               112222222223333444444 456677889999999997  455


Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      .+..+.+|...|..  ++|+|||++|++++.|| +.+|.+
T Consensus       351 ~~~~~~~~~~~V~s--vafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          351 SNSIPIQLGMPIVD--FCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CCEEEEECSSCEEE--EEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEecCCCCcEEE--EEEcCCCCEEEEEeCCC-eEEEEE
Confidence            77777788888876  99999999999999776 666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.83  E-value=1.8e-18  Score=174.86  Aligned_cols=207  Identities=10%  Similarity=0.040  Sum_probs=158.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeeeCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      .+|.+.+|++.+..            .+..+..|...+.+++|+|++..++ ++ .++.|++||+.+++.+..+.....+
T Consensus       189 ~d~~v~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  256 (433)
T 3bws_A          189 QANAVHVFDLKTLA------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLP  256 (433)
T ss_dssp             GGTEEEEEETTTCC------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEE
T ss_pred             CCCEEEEEECCCce------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCc
Confidence            45778888775322            2345668889999999999999775 45 3567999999999988888877779


Q ss_pred             EEEEEecCCcEEEEEe--------CCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEe-E-------eec
Q 037288          300 LAQQVIHSGNVVLCGF--------RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNE-Q-------WFE  360 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~--------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~-~-------w~~  360 (513)
                      .+++|+|+++.|++++        .|+.|++||+++++..    ....|...+.+++|+|   .++.. +       |+.
T Consensus       257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE----eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence            9999999999998888        4899999999987643    2345667889999998   34333 2       888


Q ss_pred             ccCcccceeEeecCCCceEEEEEcCCCCEEEEEec---------------CCeEEEEecCCCCccceEEecCCCCceeEE
Q 037288          361 LKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM---------------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRI  425 (513)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---------------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~  425 (513)
                      ..++..  ..+.+...+.++ .++|+++++++++.               ||.|++||+.  ....+..+..+. .+.. 
T Consensus       333 ~~~~~~--~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~--~~~~~~~~~~~~-~~~~-  405 (433)
T 3bws_A          333 KEKKVQ--KSIPVFDKPNTI-ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT--TDTVKEFWEAGN-QPTG-  405 (433)
T ss_dssp             TTTEEE--EEEECSSSEEEE-EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT--TTEEEEEEECSS-SEEE-
T ss_pred             CCCcEE--EEecCCCCCCeE-EEcCCCCEEEEEecCCCccccccccccccceEEEEEECC--CCcEEEEecCCC-CCce-
Confidence            766533  344555666664 78899999988876               5799999996  444666776543 4444 


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 037288          426 QLGVDQSERFVMSGGE-DCKLRIWSIRS  452 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~-Dg~v~vwd~~~  452 (513)
                       ++|+|+|++|++++. |+.|++|++..
T Consensus       406 -~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          406 -LDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -EEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -EEEcCCCCEEEEEECCCCeEEEEEecC
Confidence             899999999998875 99999999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=3e-19  Score=180.75  Aligned_cols=185  Identities=8%  Similarity=-0.062  Sum_probs=142.1

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCC-----------CcE-----EEEeeeCCCeEEEEEecCCcEEE----EEeC
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMET-----------GMA-----SWVCRSKSDILAQQVIHSGNVVL----CGFR  316 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~-----------~~~-----~~~~~~~~~V~~l~~~~~~~~l~----sg~~  316 (513)
                      ..++.+++++++.++++++.+++++|+...           ...     ...+.+...|.+++|+|+|++|+    +|+.
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~  116 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY  116 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence            467899999999999999888899986431           011     12234566799999999999999    7888


Q ss_pred             CCeEEEEECCCC--------ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-C
Q 037288          317 NGAIVTVDVRKR--------QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-D  387 (513)
Q Consensus       317 dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  387 (513)
                      |+.|++||+++.        +....+..+.+|...|.+++|                                  +|+ +
T Consensus       117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~----------------------------------~p~~~  162 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW----------------------------------NPTVP  162 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEE----------------------------------CSSCT
T ss_pred             CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEE----------------------------------CCCCC
Confidence            999999998654        111113456678888887655                                  445 7


Q ss_pred             CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC----
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN----  463 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~----  463 (513)
                      ++|++++.||+|++||++  ....+....+|...+.+  ++|+|+|++|++|+.||.|++||++ ++....+..+.    
T Consensus       163 ~~las~s~Dg~v~iwD~~--~~~~~~~~~~~~~~v~~--v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~  237 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVT--ETVKVCATLPSTVAVTS--VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYES  237 (434)
T ss_dssp             TEEEEEETTSCEEEEEES--SSEEEEEEECGGGCEEE--EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCT
T ss_pred             CEEEEEECCCeEEEEEcC--CCcceeeccCCCCceeE--EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCC
Confidence            899999999999999997  44455566678888876  8999999999999999999999998 66666554332    


Q ss_pred             ---CCeEEEEEcCCCceEEe
Q 037288          464 ---SVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       464 ---~~v~~v~~~p~~~~~~t  480 (513)
                         ..|.+++|+++..++++
T Consensus       238 ~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          238 DHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             TSCEEEEEEEEEETTEEEEE
T ss_pred             CCceeEEEEEEecCceEEEE
Confidence               27899999999776643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.81  E-value=1.2e-17  Score=166.46  Aligned_cols=204  Identities=10%  Similarity=0.089  Sum_probs=154.1

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEE-EEE-eCCeEEEEECCCCcEEEEeeeCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQA-VIG-TNLGAAMVDMETGMASWVCRSKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l-~s~-s~~~i~vwd~~~~~~~~~~~~~~~  298 (513)
                      ..++.+.+|++.+..            .+..+..|. .+.+++|+|+++++ +++ .++.|++||+.+++.+..+.+...
T Consensus         9 ~~d~~v~v~d~~~~~------------~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~   75 (391)
T 1l0q_A            9 SESDNISVIDVTSNK------------VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS   75 (391)
T ss_dssp             TTTTEEEEEETTTTE------------EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCCEEEEEECCCCe------------EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC
Confidence            356788888876432            233455554 58999999999976 455 467799999999999888887779


Q ss_pred             eEEEEEecCCcEEE-EEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288          299 ILAQQVIHSGNVVL-CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI  377 (513)
Q Consensus       299 V~~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v  377 (513)
                      +.+++|+|+++.|+ ++..|+.|++||+.+++...   .+.                                  ....+
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~---~~~----------------------------------~~~~~  118 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK----------------------------------TGKSP  118 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE----------------------------------CSSSE
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE---EEe----------------------------------CCCCc
Confidence            99999999998765 55567999999999876432   222                                  22223


Q ss_pred             eEEEEEcCCCCEE-EEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeE
Q 037288          378 SCLQSLQLYDQYF-LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV-MSGGEDCKLRIWSIRSGEL  455 (513)
Q Consensus       378 ~~~~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l-~sg~~Dg~v~vwd~~~~~~  455 (513)
                      .+ +.+++++++| ++++.|+.|++||++  ....+..+..|.. +..  ++|+|++++| ++++.|+.|++||+.+++.
T Consensus       119 ~~-~~~s~dg~~l~~~~~~~~~v~~~d~~--~~~~~~~~~~~~~-~~~--~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~  192 (391)
T 1l0q_A          119 LG-LALSPDGKKLYVTNNGDKTVSVINTV--TKAVINTVSVGRS-PKG--IAVTPDGTKVYVANFDSMSISVIDTVTNSV  192 (391)
T ss_dssp             EE-EEECTTSSEEEEEETTTTEEEEEETT--TTEEEEEEECCSS-EEE--EEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ce-EEECCCCCEEEEEeCCCCEEEEEECC--CCcEEEEEecCCC-cce--EEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence            23 4677899877 677889999999997  4456777776654 344  8899999987 6778899999999999998


Q ss_pred             EEEecCCCCCeEEEEEcCCCc-eEEee
Q 037288          456 VFEDKFSNSVPSAVCWRTQRS-MGPQI  481 (513)
Q Consensus       456 ~~~~~~~~~~v~~v~~~p~~~-~~~t~  481 (513)
                      +..+.. ...+.+++|+|++. +++++
T Consensus       193 ~~~~~~-~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          193 IDTVKV-EAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             EEEEEC-SSEEEEEEECTTSSEEEEEE
T ss_pred             EEEEec-CCCccceEECCCCCEEEEEe
Confidence            888765 45789999999965 44444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=4e-18  Score=162.07  Aligned_cols=243  Identities=9%  Similarity=-0.002  Sum_probs=170.1

Q ss_pred             cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCC-CcEEEEeee--C
Q 037288          220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMET-GMASWVCRS--K  296 (513)
Q Consensus       220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~-~~~~~~~~~--~  296 (513)
                      +..++.+.+|++.+..             ...+..|...|.+++|+|+|++|++++++.|.+||+.+ ++.......  .
T Consensus        18 ~~~~~~i~~~d~~~~~-------------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~   84 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRK-------------MRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT   84 (297)
T ss_dssp             CCCCEEEEEEETTTTE-------------EEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC
T ss_pred             CCcceeEEEEeCCCCc-------------eeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc
Confidence            3456777777765321             23466788999999999999999999999999999999 876665543  2


Q ss_pred             CCeEEEEEecCCcEEEEEe--CCCeEEEE--ECCCCccccccccccccCcCeEEEeeCC---eEE-EeE-------eecc
Q 037288          297 SDILAQQVIHSGNVVLCGF--RNGAIVTV--DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVT-NEQ-------WFEL  361 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~--~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~-s~~-------w~~~  361 (513)
                      ..+.+++|+|+++.|++++  .++.+.+|  |+.....    ..+..+. .+..+.|+|   .++ ++.       |+..
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP----RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC----EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce----EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEE
Confidence            5689999999999999998  33445555  5544432    2333333 488899998   344 443       5543


Q ss_pred             cCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe
Q 037288          362 KANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG  440 (513)
Q Consensus       362 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~  440 (513)
                      ...........+...+.+ ..++|++++|++++ .++.+++|+++. ....+..+..|...+..  ++|+|+|++|++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~--~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          160 IDSGVETRLTHGEGRNDG-PDYSPDGRWIYFNSSRTGQMQIWRVRV-DGSSVERITDSAYGDWF--PHPSPSGDKVVFVS  235 (297)
T ss_dssp             TTTCCEEECCCSSSCEEE-EEECTTSSEEEEEECTTSSCEEEEEET-TSSCEEECCCCSEEEEE--EEECTTSSEEEEEE
T ss_pred             CCCCcceEcccCCCcccc-ceECCCCCEEEEEecCCCCccEEEECC-CCCCcEEEecCCcccCC--eEECCCCCEEEEEE
Confidence            222111222233444555 47899999888766 589999999852 23366777777765554  89999999999888


Q ss_pred             CC-----------CcEEEEeCCCCeE--EEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          441 ED-----------CKLRIWSIRSGEL--VFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       441 ~D-----------g~v~vwd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .+           +.|++||+.+++.  +..+..|...+..++|+|++..+++.+.+
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            76           5699999998865  44444677789999999997665555443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.80  E-value=4.3e-17  Score=176.61  Aligned_cols=240  Identities=10%  Similarity=0.037  Sum_probs=166.5

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCC-----
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSD-----  298 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~-----  298 (513)
                      +.+.+|++.+....          ....+..|...+.+++|+|||++|++++++.|.+||+.+++...+......     
T Consensus       129 ~~i~~~d~~~~~~~----------~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g  198 (741)
T 2ecf_A          129 GELYLYDLKQEGKA----------AVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNG  198 (741)
T ss_dssp             TEEEEEESSSCSTT----------SCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEES
T ss_pred             CcEEEEECCCCCcc----------eEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceecc
Confidence            67777877644100          012256677889999999999999999999999999999887665543222     


Q ss_pred             ------------eEEEEEecCCcEEEEEeCCC---------------------------------eEEEEECCC-Ccccc
Q 037288          299 ------------ILAQQVIHSGNVVLCGFRNG---------------------------------AIVTVDVRK-RQRGC  332 (513)
Q Consensus       299 ------------V~~l~~~~~~~~l~sg~~dg---------------------------------~i~iwd~~~-~~~~~  332 (513)
                                  +.+++|+|||+.|++++.|+                                 .|.+||+.+ ++...
T Consensus       199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~  278 (741)
T 2ecf_A          199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW  278 (741)
T ss_dssp             CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE
T ss_pred             ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE
Confidence                        47899999999998887776                                 889999987 65432


Q ss_pred             ccccccccCcCeEEEeeCC---eEEEeE------------eecccCcccceeEeecCC---CceEEEEEcCCCCEEEEEe
Q 037288          333 SSRAGRRHRIPYSRLQRND---RVTNEQ------------WFELKANIWPSHTTFMPS---SISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~---~~~s~~------------w~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~s~s  394 (513)
                       +.....|...+..++| |   .++...            |+...+............   .+.. ..|+|+|+++++++
T Consensus       279 -~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~-~~~spdg~~~~~~~  355 (741)
T 2ecf_A          279 -IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS-LRFLDDGSILWSSE  355 (741)
T ss_dssp             -ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC-CEECTTSCEEEEEC
T ss_pred             -ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc-eEECCCCeEEEEec
Confidence             2222257888999999 9   344322            666655533222111111   1223 47899999989999


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEE-EEcCCCCEEEE-EeCCC--cEEEEeCCC-CeEEEEecCCCCCeEEE
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL-GVDQSERFVMS-GGEDC--KLRIWSIRS-GELVFEDKFSNSVPSAV  469 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~-~~s~~g~~l~s-g~~Dg--~v~vwd~~~-~~~~~~~~~~~~~v~~v  469 (513)
                      .||.++||.+.. ... ...+..|...+..  + .|+|+|+.|+. ++.|+  .++||++.. +..+..+.. ...+..+
T Consensus       356 ~~g~~~l~~~~~-~~~-~~~l~~~~~~v~~--~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~  430 (741)
T 2ecf_A          356 RTGFQHLYRIDS-KGK-AAALTHGNWSVDE--LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSA  430 (741)
T ss_dssp             TTSSCEEEEECS-SSC-EEESCCSSSCEEE--EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEE
T ss_pred             CCCccEEEEEcC-CCC-eeeeeecceEEEe--EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEE
Confidence            999888887752 233 6777777766654  4 59999997754 45555  899999864 555666655 5568899


Q ss_pred             EEcCCCceEEee
Q 037288          470 CWRTQRSMGPQI  481 (513)
Q Consensus       470 ~~~p~~~~~~t~  481 (513)
                      +|+|++..++..
T Consensus       431 ~~spdg~~l~~~  442 (741)
T 2ecf_A          431 SFARNASVYVDS  442 (741)
T ss_dssp             EECTTSSEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999996554433

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.79  E-value=1.8e-17  Score=166.81  Aligned_cols=234  Identities=10%  Similarity=-0.037  Sum_probs=167.5

Q ss_pred             cEEEEec--CCCCCCCCCcccccCceeEEeccccCcEEEEEEcC--------------CCCEEEEE-eC------CeEEE
Q 037288          225 SIYALNL--DNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT--------------NPSQAVIG-TN------LGAAM  281 (513)
Q Consensus       225 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--------------~g~~l~s~-s~------~~i~v  281 (513)
                      .+.+|++  .+....          .-..+.+|...+..+++++              .+..++.+ .+      +.|++
T Consensus        94 ~i~lwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i  163 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVL----------AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRV  163 (415)
T ss_dssp             EEEEEECSSSTTCEE----------EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEEeCCCCCCCEE----------eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEE
Confidence            6777887  543321          1134778888888777765              14555544 33      46999


Q ss_pred             EECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC---eEEEEECCCCccccccccccccCcCeEEEeeCC---eEE-
Q 037288          282 VDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG---AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVT-  354 (513)
Q Consensus       282 wd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~-  354 (513)
                      ||+..+....+..|...|.+++|+|||+.|++++.|+   .|++||+.+++.    ..+..|...+.+++|+|   .++ 
T Consensus       164 ~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----~~l~~~~~~~~~~~~spdg~~la~  239 (415)
T 2hqs_A          164 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----RQVASFPRHNGAPAFSPDGSKLAF  239 (415)
T ss_dssp             EETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----EEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----EEeecCCCcccCEEEcCCCCEEEE
Confidence            9998777666677888999999999999999999885   999999998763    35667888999999999   344 


Q ss_pred             EeE---------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eEEEEecCCCCccceEEecCCCCce
Q 037288          355 NEQ---------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TVKLYDHRLTTRGAVQSYEGHVNSH  422 (513)
Q Consensus       355 s~~---------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~lwd~~~~~~~~~~~~~~h~~~v  422 (513)
                      +++         |+...+...  ....+...+.+ ..|+|+|++|++++. ++  .|.+||+.   .+....+..|...+
T Consensus       240 ~~~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~-~~~spdg~~l~~~s~~~g~~~i~~~d~~---~~~~~~l~~~~~~~  313 (415)
T 2hqs_A          240 ALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTE-PTWFPDSQNLAFTSDQAGRPQVYKVNIN---GGAPQRITWEGSQN  313 (415)
T ss_dssp             EECTTSSCEEEEEETTTCCEE--ECCCCSSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETT---SSCCEECCCSSSEE
T ss_pred             EEecCCCceEEEEECCCCCEE--eCcCCCCcccc-eEECCCCCEEEEEECCCCCcEEEEEECC---CCCEEEEecCCCcc
Confidence            432         666655431  22223334444 588999999998886 45  67777875   33445566666655


Q ss_pred             eEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          423 TRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       423 ~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      ..  ++|+|+|++|++++.+   ..|++||+.+++.. .+..+. .+.+++|+|++.+++..+
T Consensus       314 ~~--~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s  372 (415)
T 2hqs_A          314 QD--ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSS  372 (415)
T ss_dssp             EE--EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEE
T ss_pred             cC--eEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEE
Confidence            44  8999999999988764   58999999998874 454444 799999999976554443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.76  E-value=5.4e-16  Score=150.95  Aligned_cols=189  Identities=7%  Similarity=0.048  Sum_probs=126.1

Q ss_pred             cEEEEEEcCCCCEEEEEe--CCeEEEEECC---CCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEECCC-Ccc
Q 037288          258 TVWTADFCTNPSQAVIGT--NLGAAMVDME---TGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVRK-RQR  330 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s--~~~i~vwd~~---~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~-~~~  330 (513)
                      .+..++|+|+++++++++  ++.|.+||+.   +.+....+.....+.+++|+|+|+.|++++ .++.|.+||+.. ++.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            788999999999876654  4569999994   334445555566799999999998888777 899999999986 332


Q ss_pred             ccccc--cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCC
Q 037288          331 GCSSR--AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLT  407 (513)
Q Consensus       331 ~~~~~--~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~  407 (513)
                      .. ..  .+.                                ......+.. +.++|+++++++++ .++.|.+||+...
T Consensus       165 ~~-~~~~~~~--------------------------------~~~~~~~~~-~~~~pdg~~l~~~~~~~~~i~~~~~~~~  210 (343)
T 1ri6_A          165 VA-QDPAEVT--------------------------------TVEGAGPRH-MVFHPNEQYAYCVNELNSSVDVWELKDP  210 (343)
T ss_dssp             EE-EEEEEEE--------------------------------CSTTCCEEE-EEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred             ee-ecccccc--------------------------------cCCCCCcce-EEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            11 00  000                                001112223 46788999776555 7899999999521


Q ss_pred             Ccc--ceEEec----CCCCceeEEEEEEcCCCCEEEE-EeCCCcEEEEeCC--C--CeEEEEecCCCCCeEEEEEcCCCc
Q 037288          408 TRG--AVQSYE----GHVNSHTRIQLGVDQSERFVMS-GGEDCKLRIWSIR--S--GELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       408 ~~~--~~~~~~----~h~~~v~~~~~~~s~~g~~l~s-g~~Dg~v~vwd~~--~--~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      ...  ....+.    ++........++|+|+|++|++ +..|+.|.+||+.  +  .+.+..+..+.. +..++|+|++.
T Consensus       211 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~  289 (343)
T 1ri6_A          211 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK  289 (343)
T ss_dssp             TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS
T ss_pred             CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC
Confidence            221  122332    2222223345899999998874 4579999999998  3  345555555444 88999999975


Q ss_pred             -eEEee
Q 037288          477 -MGPQI  481 (513)
Q Consensus       477 -~~~t~  481 (513)
                       +++++
T Consensus       290 ~l~~~~  295 (343)
T 1ri6_A          290 YLIAAG  295 (343)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence             44444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=9.6e-16  Score=159.32  Aligned_cols=238  Identities=8%  Similarity=0.009  Sum_probs=171.3

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEec-cccCcEEEEEEcCCCCEEEEEe-CCeEEEEEC--CCCcEEEEeeeCC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVA-SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDM--ETGMASWVCRSKS  297 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~--~~~~~~~~~~~~~  297 (513)
                      .++.+.+|+..+...            +..+. +|.  +..++|+|+|++|++++ ++.|.+||+  .+++.+..+.+..
T Consensus       157 ~d~~V~v~D~~t~~~------------~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          157 DAGQIALVDGDSKKI------------VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             GGTEEEEEETTTCCE------------EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             CCCeEEEEECCCceE------------EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            467787787653322            33444 333  89999999999998775 566999999  8888888888777


Q ss_pred             CeEEEEEec----CCcEEEEEeC-CCeEEEEECCCCccccccccccc----------cCc-CeEEEeeCC---eEEEeE-
Q 037288          298 DILAQQVIH----SGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRR----------HRI-PYSRLQRND---RVTNEQ-  357 (513)
Q Consensus       298 ~V~~l~~~~----~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~----------h~~-~v~~v~~~~---~~~s~~-  357 (513)
                      .+..++|+|    ||++|++++. +++|.+||..+.+...   .+..          |.. .+.++.+++   .++... 
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~---~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ---IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE---EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce---eecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            799999999    9999999885 8999999998877543   3322          323 688899887   333322 


Q ss_pred             -------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecC----CCCceeEE
Q 037288          358 -------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEG----HVNSHTRI  425 (513)
Q Consensus       358 -------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~----h~~~v~~~  425 (513)
                             |+...........+.+...+.. ..|+|++++|++++ .+++|.+||+.  +..++..+..    |.+.... 
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~-~~~spdg~~l~va~~~~~~v~v~D~~--tg~l~~~i~~g~~ph~g~g~~-  375 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHD-GGWDSSHRYFMTAANNSNKVAVIDSK--DRRLSALVDVGKTPHPGRGAN-  375 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEEECCSSCCC-EEECTTSCEEEEEEGGGTEEEEEETT--TTEEEEEEECSSSBCCTTCEE-
T ss_pred             CCCeEEEEEecCCCcceeEEeccCcCccC-ceECCCCCEEEEEecCCCeEEEEECC--CCeEEEeeccCCCCCCCCCcc-
Confidence                   6665544332224444344444 47899999877665 58999999997  4456666664    5443322 


Q ss_pred             EEEEcCC-CCEEEEEe-CCCcEEEEeCCC-------CeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          426 QLGVDQS-ERFVMSGG-EDCKLRIWSIRS-------GELVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       426 ~~~~s~~-g~~l~sg~-~Dg~v~vwd~~~-------~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                       + ++|+ +..++++. .|++|.+||+.+       +++++++..+...+..++++|++..+..+.
T Consensus       376 -~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          376 -F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             -E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             -c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence             3 4787 55566665 589999999998       899999999888888999999976655543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=6.1e-16  Score=160.81  Aligned_cols=239  Identities=8%  Similarity=-0.007  Sum_probs=171.1

Q ss_pred             ccEEEEecC--CCCCCCCCcccccCceeEEeccccCcEEEEEEcC----CCCEEEEEe--CCeEEEEECCCCcEEEEeee
Q 037288          224 GSIYALNLD--NPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT----NPSQAVIGT--NLGAAMVDMETGMASWVCRS  295 (513)
Q Consensus       224 g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~----~g~~l~s~s--~~~i~vwd~~~~~~~~~~~~  295 (513)
                      +.+.+|++.  +.            ..+..+. +...+..++|+|    +|+++++++  +++|.+||..+++++..+..
T Consensus       200 ~~V~v~D~~~~t~------------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~  266 (543)
T 1nir_A          200 ARIDMIDLWAKEP------------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST  266 (543)
T ss_dssp             SEEEEEETTSSSC------------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEECcCCCC------------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc
Confidence            778888873  21            1233344 445789999999    999988775  67899999999998777652


Q ss_pred             -----------CC-CeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--
Q 037288          296 -----------KS-DILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--  357 (513)
Q Consensus       296 -----------~~-~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--  357 (513)
                                 .. .+.++.++|++ .++++...++.|.+||+.+.+... +..+ .+...+..+.|+|   .++++.  
T Consensus       267 ~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i-~~~~~~~~~~~spdg~~l~va~~~  344 (543)
T 1nir_A          267 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSI-GAAPFLHDGGWDSSHRYFMTAANN  344 (543)
T ss_dssp             CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE-EEEE-ECCSSCCCEEECTTSCEEEEEEGG
T ss_pred             cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce-eEEe-ccCcCccCceECCCCCEEEEEecC
Confidence                       23 68999999977 567777889999999998765432 2222 3556678899998   355443  


Q ss_pred             ------eecccCcccceeEe---ecCCCceEEEEEcCC-CCEEEEEe-cCCeEEEEecCCCC-----ccceEEecCCCCc
Q 037288          358 ------WFELKANIWPSHTT---FMPSSISCLQSLQLY-DQYFLASS-MDGTVKLYDHRLTT-----RGAVQSYEGHVNS  421 (513)
Q Consensus       358 ------w~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~~~l~s~s-~dg~i~lwd~~~~~-----~~~~~~~~~h~~~  421 (513)
                            ||..++++......   .|+.....  +++|+ +..++++. .|++|.+||+....     .++++++.+|.+.
T Consensus       345 ~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          345 SNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             GTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             CCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence                  88888775433221   13333333  35666 66677765 58999999997311     4588999999877


Q ss_pred             eeEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCeEE-EEe--------cCCCCCeEEEEEcCCCceEEee
Q 037288          422 HTRIQLGVDQSERFVMSGG-------EDCKLRIWSIRSGELV-FED--------KFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       422 v~~~~~~~s~~g~~l~sg~-------~Dg~v~vwd~~~~~~~-~~~--------~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      +..  +.++|++++|++++       .+++|.|||+.+++.. ..+        ..+...+..++|+|++..+..+
T Consensus       423 ~~~--v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          423 SLF--IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             CCC--EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred             ceE--EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence            655  88999999999987       2789999999999877 443        3446679999999996554433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.72  E-value=6.8e-16  Score=166.22  Aligned_cols=238  Identities=10%  Similarity=-0.017  Sum_probs=164.6

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCC-----CcEEEEeee-CC
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMET-----GMASWVCRS-KS  297 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~-----~~~~~~~~~-~~  297 (513)
                      +.+.+|++.+..             ...+..+...+.+++|+|||+.|+++.++.|.+||+.+     ++...+... ..
T Consensus       101 ~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~  167 (706)
T 2z3z_A          101 GGLVGFDMLARK-------------VTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTE  167 (706)
T ss_dssp             TEEEEEETTTTE-------------EEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred             CEEEEEECCCCc-------------eEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCC
Confidence            677777765321             22345566778899999999999998888999999998     776554442 22


Q ss_pred             C--------------eEEEEEecCCcEEEEEe---------------------------------CCCeEEEEECCCCcc
Q 037288          298 D--------------ILAQQVIHSGNVVLCGF---------------------------------RNGAIVTVDVRKRQR  330 (513)
Q Consensus       298 ~--------------V~~l~~~~~~~~l~sg~---------------------------------~dg~i~iwd~~~~~~  330 (513)
                      .              +.+++|+|||+.|++++                                 .+..|++||+.+++.
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence            2              48999999999999887                                 457899999988764


Q ss_pred             ccccccccccCcCeEEEeeCC---eEEEeE------------eecccC-cccceeEeecCCC---ceEEEEEcC--CCCE
Q 037288          331 GCSSRAGRRHRIPYSRLQRND---RVTNEQ------------WFELKA-NIWPSHTTFMPSS---ISCLQSLQL--YDQY  389 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~---~~~s~~------------w~~~~~-~~~~~~~~~~~~~---v~~~~~~~~--~~~~  389 (513)
                      .. +.....|...+.+++|+|   .++.++            |+...+ .............   +.. ..|+|  +|++
T Consensus       248 ~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~-~~~sp~~dg~~  325 (706)
T 2z3z_A          248 VY-LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP-LTFLPGSNNQF  325 (706)
T ss_dssp             EE-CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC-CEECTTCSSEE
T ss_pred             Ee-eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC-ceeecCCCCEE
Confidence            33 222335778899999999   355432            666555 2221111111111   122 37889  9999


Q ss_pred             EEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CC----cEEEEeCCCCeEEEEecCCCC
Q 037288          390 FLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DC----KLRIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg----~v~vwd~~~~~~~~~~~~~~~  464 (513)
                      +++++.|+.++||++.. ..+.+..+..|...+.. .++|+|+|+.|+.++. ++    .|+.||+.+++ +..+. +..
T Consensus       326 l~~~~~~g~~~l~~~~~-~~~~~~~l~~~~~~v~~-~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~  401 (706)
T 2z3z_A          326 IWQSRRDGWNHLYLYDT-TGRLIRQVTKGEWEVTN-FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PES  401 (706)
T ss_dssp             EEEECTTSSCEEEEEET-TSCEEEECCCSSSCEEE-EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSS
T ss_pred             EEEEccCCccEEEEEEC-CCCEEEecCCCCeEEEe-eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCC
Confidence            99999999999998751 23467777777665532 1689999998866554 44    67778887776 33444 456


Q ss_pred             CeEEEEEcCCCceEEe
Q 037288          465 VPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       465 ~v~~v~~~p~~~~~~t  480 (513)
                      .+..++|+|++..++.
T Consensus       402 ~~~~~~~spdg~~l~~  417 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIID  417 (706)
T ss_dssp             SEEEEEECTTSSEEEE
T ss_pred             ceEEEEECCCCCEEEE
Confidence            6899999999755443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.72  E-value=7.7e-16  Score=166.18  Aligned_cols=242  Identities=8%  Similarity=-0.038  Sum_probs=156.8

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeee-CCCe--
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRS-KSDI--  299 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~-~~~V--  299 (513)
                      .+.+.+|++.+....          .+....+|...+..++|+|||+.||+++++.|++||+.+++...+... ...+  
T Consensus        90 ~~~i~~~d~~~~~~~----------~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~  159 (723)
T 1xfd_A           90 TGYYVLSKIPHGDPQ----------SLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIY  159 (723)
T ss_dssp             CSEEEEEESSSCCCE----------ECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred             eeeEEEEECCCCceE----------eccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceE
Confidence            467778887654321          011123455668899999999999999998999999999886665542 3333  


Q ss_pred             ----------------EEEEEecCCcEEEEEeCCC----------------------------------eEEEEECCCCc
Q 037288          300 ----------------LAQQVIHSGNVVLCGFRNG----------------------------------AIVTVDVRKRQ  329 (513)
Q Consensus       300 ----------------~~l~~~~~~~~l~sg~~dg----------------------------------~i~iwd~~~~~  329 (513)
                                      .+++|+|||+.|+.++.|+                                  .|++||+.+++
T Consensus       160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                            7899999999998887653                                  89999998776


Q ss_pred             cccccccccc------cCcCeEEEeeCC--e-EEEeE-----------eecccCcccceeEeecCCCce---EEEEEcCC
Q 037288          330 RGCSSRAGRR------HRIPYSRLQRND--R-VTNEQ-----------WFELKANIWPSHTTFMPSSIS---CLQSLQLY  386 (513)
Q Consensus       330 ~~~~~~~~~~------h~~~v~~v~~~~--~-~~s~~-----------w~~~~~~~~~~~~~~~~~~v~---~~~~~~~~  386 (513)
                      ...   .+..      +...+..++|+|  . ++...           |+...++........+...+.   ....|+|+
T Consensus       240 ~~~---~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          240 HDL---EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             CCE---ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             eeE---EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence            422   3333      367889999999  3 32321           666666543222222222221   12478999


Q ss_pred             CCEEEE--EecCC------eEEEEecCCCCccc---eEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCC
Q 037288          387 DQYFLA--SSMDG------TVKLYDHRLTTRGA---VQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRS  452 (513)
Q Consensus       387 ~~~l~s--~s~dg------~i~lwd~~~~~~~~---~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~  452 (513)
                      |+.|+.  +..++      .|.+||+.  ..+.   ...+..+...+.. .++|+|||+.|+..+.+   +.++||++..
T Consensus       317 g~~l~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~~~~~l~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          317 GRKFFFIRAIPQGGRGKFYHITVSSSQ--PNSSNDNIQSITSGDWDVTK-ILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SCSEEEEEEECCSSSSCEEEEEEECSS--CCSSSCCCCBSCCSSSCEEE-EEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             CCeEEEEEecccCCCcceeEEEEEecc--CCCCccceeEeecCCeEEEe-eeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence            997775  44567      46667732  2223   4555533333322 26899999999766655   7899999864


Q ss_pred             C--eEEEEecC---CCCCeEEEEEcCCCceEEe
Q 037288          453 G--ELVFEDKF---SNSVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       453 ~--~~~~~~~~---~~~~v~~v~~~p~~~~~~t  480 (513)
                      .  .....+..   +...+..++|+|++..++.
T Consensus       394 ~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          394 VGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             STTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             CCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence            3  23333432   4566889999999654443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.71  E-value=2.7e-14  Score=139.66  Aligned_cols=187  Identities=10%  Similarity=0.013  Sum_probs=138.7

Q ss_pred             EEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          259 VWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      +.+++|+|+|+.++++.   ++.|.+||+.+++....+. +...+.+++|+|+|+.|++++.++.|.+||+.+++....+
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            78999999999777654   4569999999999888877 5556899999999999999999999999999887643200


Q ss_pred             cc-ccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCccce
Q 037288          335 RA-GRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       335 ~~-~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~~~  412 (513)
                      .. ..++...+.                                 . +.++|+++++++++. ++.|.+||+.  ....+
T Consensus       223 ~~~~~~~~~~~~---------------------------------~-~~~s~dg~~l~~~~~~~~~v~~~d~~--~~~~~  266 (353)
T 3vgz_A          223 KLLDDGKEHFFI---------------------------------N-ISLDTARQRAFITDSKAAEVLVVDTR--NGNIL  266 (353)
T ss_dssp             ECCCSSSCCCEE---------------------------------E-EEEETTTTEEEEEESSSSEEEEEETT--TCCEE
T ss_pred             EcCCCCCCcccc---------------------------------e-EEECCCCCEEEEEeCCCCEEEEEECC--CCcEE
Confidence            00 001111122                                 2 467889997776665 5999999996  44456


Q ss_pred             EEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc-eEEeeCCCee
Q 037288          413 QSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS-MGPQIEGKIH  486 (513)
Q Consensus       413 ~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~~t~~~~~~  486 (513)
                      ..+..+..  ..  ++|+|+|++++.++ .++.|.+||+.+++.+..+... ..+..++|+|++. ++++...+..
T Consensus       267 ~~~~~~~~--~~--~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~  337 (353)
T 3vgz_A          267 AKVAAPES--LA--VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKST  337 (353)
T ss_dssp             EEEECSSC--CC--EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCCB
T ss_pred             EEEEcCCC--ce--EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccccc
Confidence            66654332  23  78999999766555 6899999999999999887764 4689999999964 6666665433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.71  E-value=5.3e-15  Score=143.52  Aligned_cols=188  Identities=10%  Similarity=-0.018  Sum_probs=133.4

Q ss_pred             cEEEEEEcCCCCEEEEEe-------------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          258 TVWTADFCTNPSQAVIGT-------------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s-------------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      .+.+++|+|+|++++++.             ++.|.+||+.+++....+.....+.+++|+|+|+.|+++  ++.|.+||
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d  160 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMD  160 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEE
Confidence            567899999999888773             577999999999888777766678999999999988877  68999999


Q ss_pred             CCCCccccccccccccC--cCeEEEeeCC---eEE-------------------------------EeEeecccCcccce
Q 037288          325 VRKRQRGCSSRAGRRHR--IPYSRLQRND---RVT-------------------------------NEQWFELKANIWPS  368 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~--~~v~~v~~~~---~~~-------------------------------s~~w~~~~~~~~~~  368 (513)
                      +.+++...   .+..+.  .++   .|+|   .++                               ...|+...++.. .
T Consensus       161 ~~~~~~~~---~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~  233 (337)
T 1pby_B          161 PEAGTLVE---DKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M  233 (337)
T ss_dssp             TTTTEEEE---EECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E
T ss_pred             CCCCcEee---eeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E
Confidence            98876432   222221  111   3333   010                               112555554433 1


Q ss_pred             eEe-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEE
Q 037288          369 HTT-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI  447 (513)
Q Consensus       369 ~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~v  447 (513)
                      ... .+...+.+ +.++|++++++++  ++.|.+||+.  ....+..+..+. .+..  ++|+|+|++|++++.|+.|++
T Consensus       234 ~~~~~~~~~~~~-~~~s~dg~~l~~~--~~~v~~~d~~--~~~~~~~~~~~~-~~~~--~~~s~dg~~l~~~~~~~~i~v  305 (337)
T 1pby_B          234 REVRIMDVFYFS-TAVNPAKTRAFGA--YNVLESFDLE--KNASIKRVPLPH-SYYS--VNVSTDGSTVWLGGALGDLAA  305 (337)
T ss_dssp             EEEEECSSCEEE-EEECTTSSEEEEE--ESEEEEEETT--TTEEEEEEECSS-CCCE--EEECTTSCEEEEESBSSEEEE
T ss_pred             eecCCCCCceee-EEECCCCCEEEEe--CCeEEEEECC--CCcCcceecCCC-ceee--EEECCCCCEEEEEcCCCcEEE
Confidence            112 12223334 5789999999888  6899999996  444556665433 3344  889999999999999999999


Q ss_pred             EeCCCCeEEEEecCC
Q 037288          448 WSIRSGELVFEDKFS  462 (513)
Q Consensus       448 wd~~~~~~~~~~~~~  462 (513)
                      ||+.+++.+..+..+
T Consensus       306 ~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          306 YDAETLEKKGQVDLP  320 (337)
T ss_dssp             EETTTCCEEEEEECG
T ss_pred             EECcCCcEEEEEEcC
Confidence            999999998887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=5.2e-15  Score=143.60  Aligned_cols=213  Identities=7%  Similarity=-0.016  Sum_probs=142.2

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCC
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSD  298 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~  298 (513)
                      ++.+.++++.+...           ....+..+..+..+++|+|+|++++++.++    .|.+||+.+++.+..+.....
T Consensus        61 ~~~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  129 (331)
T 3u4y_A           61 CQTLVQIETQLEPP-----------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD  129 (331)
T ss_dssp             TCEEEEEECSSSSC-----------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT
T ss_pred             CCeEEEEECCCCce-----------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC
Confidence            44666676654322           023345555666669999999988866554    799999999998888877777


Q ss_pred             eEEEEEecCCcE-EEEEeCCCe-EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288          299 ILAQQVIHSGNV-VLCGFRNGA-IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS  376 (513)
Q Consensus       299 V~~l~~~~~~~~-l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~  376 (513)
                      ..+++|+|+|+. ++++..++. |.+|++.......   ...                             ...+.....
T Consensus       130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~---~~~-----------------------------~~~~~~~~~  177 (331)
T 3u4y_A          130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF---DTG-----------------------------QEFISGGTR  177 (331)
T ss_dssp             EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE---EEE-----------------------------EEEECSSSS
T ss_pred             ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe---ecC-----------------------------CccccCCCC
Confidence            899999999974 455556688 9999998543211   000                             001111222


Q ss_pred             ceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccc---eEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 037288          377 ISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGA---VQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIR  451 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~---~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~  451 (513)
                      ... ..++|+++++++++ .++.|.+||+.  ....   +..+..+. .+..  ++|+|+|++|+.++ .++.|.+||+.
T Consensus       178 ~~~-~~~spdg~~l~v~~~~~~~v~v~d~~--~~~~~~~~~~~~~~~-~~~~--~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          178 PFN-ITFTPDGNFAFVANLIGNSIGILETQ--NPENITLLNAVGTNN-LPGT--IVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EEE-EEECTTSSEEEEEETTTTEEEEEECS--STTSCEEEEEEECSS-CCCC--EEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             ccc-eEECCCCCEEEEEeCCCCeEEEEECC--CCcccceeeeccCCC-CCce--EEECCCCCEEEEEEcCCCEEEEEECC
Confidence            233 47889999665554 68999999996  3445   66666443 3344  88999999876655 47889999999


Q ss_pred             CCeE--EEEecCC----CC---CeEEEEEcCCCc-eEEeeCCC
Q 037288          452 SGEL--VFEDKFS----NS---VPSAVCWRTQRS-MGPQIEGK  484 (513)
Q Consensus       452 ~~~~--~~~~~~~----~~---~v~~v~~~p~~~-~~~t~~~~  484 (513)
                      +++.  +..+..+    ..   ....++|+|++. +++++..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          252 SGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             TTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             CCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence            9987  4443322    22   235689999965 44555544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.70  E-value=7.2e-16  Score=173.26  Aligned_cols=183  Identities=11%  Similarity=0.044  Sum_probs=147.7

Q ss_pred             cccCcEEEEEEc-CCCCEEEEEeCCeEEEEECCCCcEEEEeeeCC-CeEEEEEecCCcEEEEEeCCCeEE-EEECCCCcc
Q 037288          254 SFKCTVWTADFC-TNPSQAVIGTNLGAAMVDMETGMASWVCRSKS-DILAQQVIHSGNVVLCGFRNGAIV-TVDVRKRQR  330 (513)
Q Consensus       254 ~h~~~V~~~~~s-~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~-~V~~l~~~~~~~~l~sg~~dg~i~-iwd~~~~~~  330 (513)
                      .|...+.+++|+ |+|+.+++++++.+.+|++.++....+..+.. .+.+++|+ ||+.|+.++.++.+. +||+..+..
T Consensus       293 ~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          293 ISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             EECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence            356689999999 99999999888889999999888766556777 79999999 999999988888898 999887653


Q ss_pred             ccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc
Q 037288          331 GCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG  410 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~  410 (513)
                      .    .+.+|...+..                                  ..|+|+|++|++++.++.|++||+.  ...
T Consensus       372 ~----~l~~~~~~~~~----------------------------------~~~SpDG~~la~~~~~~~v~~~d~~--tg~  411 (1045)
T 1k32_A          372 E----KFEENLGNVFA----------------------------------MGVDRNGKFAVVANDRFEIMTVDLE--TGK  411 (1045)
T ss_dssp             E----ECCCCCCSEEE----------------------------------EEECTTSSEEEEEETTSEEEEEETT--TCC
T ss_pred             e----EecCCccceee----------------------------------eEECCCCCEEEEECCCCeEEEEECC--CCc
Confidence            2    33355555554                                  4667899999999999999999996  334


Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEe
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC----------KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg----------~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t  480 (513)
                      ....+.+|...+..  ++|+|||++|++++.++          .|++||+.+++ +..+..+...+..++|+|++..++.
T Consensus       412 ~~~~~~~~~~~v~~--~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          412 PTVIERSREAMITD--FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             EEEEEECSSSCCCC--EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             eEEeccCCCCCccc--eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEE
Confidence            55555678887766  89999999999887654          89999999988 6667777778899999999754443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.70  E-value=1.1e-15  Score=160.87  Aligned_cols=173  Identities=10%  Similarity=-0.039  Sum_probs=131.9

Q ss_pred             EEEEcCCCC--EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC----CeEEEEECCCCcccccc
Q 037288          261 TADFCTNPS--QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN----GAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       261 ~~~~s~~g~--~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~  334 (513)
                      ..+|+|+|+  .++++.++.+.+||+.+++...+..+..  .+++|+|||+.|++++.|    +.|++||+.+++.    
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~----  187 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL----  187 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC----
T ss_pred             eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc----
Confidence            557777775  5556667777799999998777776655  899999999999988877    7899999987763    


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC--eEEEEecCCCCccce
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG--TVKLYDHRLTTRGAV  412 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg--~i~lwd~~~~~~~~~  412 (513)
                      ..+..|...+..                                  ..|+|||+.|+++..++  .|++||+.  .....
T Consensus       188 ~~l~~~~~~~~~----------------------------------~~~SpDG~~l~~~~~~~~~~i~~~d~~--~~~~~  231 (582)
T 3o4h_A          188 RVFDSGEGSFSS----------------------------------ASISPGMKVTAGLETAREARLVTVDPR--DGSVE  231 (582)
T ss_dssp             EEECCSSCEEEE----------------------------------EEECTTSCEEEEEECSSCEEEEEECTT--TCCEE
T ss_pred             eEeecCCCcccc----------------------------------ceECCCCCEEEEccCCCeeEEEEEcCC--CCcEE
Confidence            345556555544                                  46788999999888888  89999986  33344


Q ss_pred             EEecCCCCceeEEEEE--------EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          413 QSYEGHVNSHTRIQLG--------VDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       413 ~~~~~h~~~v~~~~~~--------~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       .+.+|...+..  +.        |+|||.++++++.|+.+++|++  ++.+.   .....+.+++|+ ++.++++.+.+
T Consensus       232 -~~~~~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          232 -DLELPSKDFSS--YRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             -ECCCSCSHHHH--HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred             -EccCCCcChhh--hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCC
Confidence             67777766544  45        9999999999999999999999  77654   234568899999 76666655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.69  E-value=2.8e-14  Score=139.64  Aligned_cols=230  Identities=7%  Similarity=-0.005  Sum_probs=148.3

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEE--E-eeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEEC
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGT---NLGAAMVDMETGMASW--V-CRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDV  325 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~--~-~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~  325 (513)
                      ..+...+..++|+|+|++++++.   ++.|.+||+.++....  . ..+...+..++|+|+|+.|++++ .++.|.+||+
T Consensus        36 ~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            34556778899999999444444   3569999998776322  2 23667789999999999888887 6899999999


Q ss_pred             CCCccccccccccc---------cCcCeEEEeeCC--eEEEeE--------eecc-cCcccceeEeec--CCCceEEEEE
Q 037288          326 RKRQRGCSSRAGRR---------HRIPYSRLQRND--RVTNEQ--------WFEL-KANIWPSHTTFM--PSSISCLQSL  383 (513)
Q Consensus       326 ~~~~~~~~~~~~~~---------h~~~v~~v~~~~--~~~s~~--------w~~~-~~~~~~~~~~~~--~~~v~~~~~~  383 (513)
                      ........+..+..         +...+.+++|+|  .++...        |+.. .+.+.....+..  ...... +.|
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~-~~~  194 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH-LVF  194 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE-EEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce-EEE
Confidence            64322110222211         123478899998  444433        7776 343332222222  223444 588


Q ss_pred             cCCCCEEEE-EecCCeEEEEecCCCCcc--ceEEecCCCCc----eeEEEEEEcCCCCEE-EEEeCCCcEEEEeCC---C
Q 037288          384 QLYDQYFLA-SSMDGTVKLYDHRLTTRG--AVQSYEGHVNS----HTRIQLGVDQSERFV-MSGGEDCKLRIWSIR---S  452 (513)
Q Consensus       384 ~~~~~~l~s-~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~----v~~~~~~~s~~g~~l-~sg~~Dg~v~vwd~~---~  452 (513)
                      +|+|+++++ +..++.|.+|++......  .+..+......    .....++|+|+|++| +++..++.|.+|++.   .
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            999996665 456899999998621111  23333333221    123448999999987 455668999999997   2


Q ss_pred             CeEEEEecCCCCCeEEEEEcCCCc-eEEeeCC
Q 037288          453 GELVFEDKFSNSVPSAVCWRTQRS-MGPQIEG  483 (513)
Q Consensus       453 ~~~~~~~~~~~~~v~~v~~~p~~~-~~~t~~~  483 (513)
                      .+.+..+..+...+..++|+|++. ++++...
T Consensus       275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             EEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence            355666666666789999999975 4444433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.68  E-value=6.2e-15  Score=159.57  Aligned_cols=215  Identities=6%  Similarity=-0.088  Sum_probs=148.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCC---cEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETG---MASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~---~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      .|.+++|+|||++|++++++.|.+||+.++   ....+..+...+.+++|+|||+.|+.++ ++.|++||+.+++...  
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~--  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ--  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE--
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE--
Confidence            478999999999999998888999999988   6655556777899999999999998887 5699999998875432  


Q ss_pred             ccccccCcC----------------eEEEeeCC---eEEEeEee------------------------------------
Q 037288          335 RAGRRHRIP----------------YSRLQRND---RVTNEQWF------------------------------------  359 (513)
Q Consensus       335 ~~~~~h~~~----------------v~~v~~~~---~~~s~~w~------------------------------------  359 (513)
                       ....+...                +.++.|+|   .++.++.+                                    
T Consensus       187 -~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          187 -LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             -CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             -eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence             22223222                47789998   45555432                                    


Q ss_pred             ----ccc-CcccceeEe-ecCCCceEEEEEcCCCCEEEEEec-----CCeEEEEecCCCCccceEEecCCCC----ceeE
Q 037288          360 ----ELK-ANIWPSHTT-FMPSSISCLQSLQLYDQYFLASSM-----DGTVKLYDHRLTTRGAVQSYEGHVN----SHTR  424 (513)
Q Consensus       360 ----~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~lwd~~~~~~~~~~~~~~h~~----~v~~  424 (513)
                          ... +........ .+...+.. ..| |+|++|++++.     +..|++||+.  .......+..+..    .+..
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLAR-VNW-RDPQHLSFQRQSRDQKKLDLVEVTLA--SNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEE-EEE-EETTEEEEEEEETTSSEEEEEEEETT--TCCEEEEEEEECSSCCCCCSC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEE-EEe-CCCCEEEEEEecccCCeEEEEEEECC--CCceEEEEEcCCCCcCCcCCc
Confidence                222 221100000 11223344 466 89999997764     5679999996  3344444444432    2233


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecCCCCCeEEE-EEcCCCc-eEEeeCC
Q 037288          425 IQLGVDQSERFVMSGGEDCKLRIWSIR-SGELVFEDKFSNSVPSAV-CWRTQRS-MGPQIEG  483 (513)
Q Consensus       425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~-~~~~~~~~~~~~~~v~~v-~~~p~~~-~~~t~~~  483 (513)
                        ++|+|||+++++++.||.++||.+. +++ ...+..+...+..+ .|+|++. +++++..
T Consensus       342 --~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~  400 (741)
T 2ecf_A          342 --LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI  400 (741)
T ss_dssp             --CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred             --eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence              7899999999999999988888765 445 67777777778887 5999964 4444443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.68  E-value=7e-15  Score=139.43  Aligned_cols=199  Identities=9%  Similarity=0.010  Sum_probs=146.6

Q ss_pred             CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC-Ccccccccccccc-CcCeEEEeeCC--
Q 037288          276 NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK-RQRGCSSRAGRRH-RIPYSRLQRND--  351 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~h-~~~v~~v~~~~--  351 (513)
                      ++.|++||+.+++...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++...   ....| ...+.++.|+|  
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK---VDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE---CCCTTCCCBCSCCEECTTS
T ss_pred             ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE---eccccccccccceEECCCC
Confidence            4559999999999888888999999999999999999986 88999999988 65432   34444 46788999998  


Q ss_pred             -eEEEeE---------eecccCcccceeEeecCCCceEEEEEcCCCCEEE-EEecCCeEEEEecCCCCccceEEecCCCC
Q 037288          352 -RVTNEQ---------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL-ASSMDGTVKLYDHRLTTRGAVQSYEGHVN  420 (513)
Q Consensus       352 -~~~s~~---------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~lwd~~~~~~~~~~~~~~h~~  420 (513)
                       .++.+.         |........ ...+.....+.. ..++|++++|+ +++.|+.+++|+++. .......+..|..
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~spdg~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~  173 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYW-HGWSPDGKSFTYCGIRDQVFDIYSMDI-DSGVETRLTHGEG  173 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEE-EEECTTSSEEEEEEEETTEEEEEEEET-TTCCEEECCCSSS
T ss_pred             CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccc-eEECCCCCEEEEEECCCCceEEEEEEC-CCCcceEcccCCC
Confidence             444443         333221111 223333334444 47899999887 778899999999752 2335566777777


Q ss_pred             ceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          421 SHTRIQLGVDQSERFVMSGG-EDCKLRIWSIR-SGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       421 ~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~-~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      .+..  +.|+|+|++|+.++ .|+.+++|++. .+..+..+..+...+..++|+|++..++....
T Consensus       174 ~~~~--~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          174 RNDG--PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             CEEE--EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             cccc--ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            7765  89999999888766 59999999986 56666777777778999999999765554443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.66  E-value=1.8e-13  Score=133.74  Aligned_cols=205  Identities=9%  Similarity=0.024  Sum_probs=133.0

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECC-CCcE--EEEeeeC----------CCeEEEEEecCCcEEEEEe
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDME-TGMA--SWVCRSK----------SDILAQQVIHSGNVVLCGF  315 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~-~~~~--~~~~~~~----------~~V~~l~~~~~~~~l~sg~  315 (513)
                      .+..+...+..++|+|+|++|++++  ++.+.+|++. ++..  +....+.          ..+.+++|+|+|+++++..
T Consensus        80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            3455677889999999999888765  4569999995 3332  2222221          2388999999999777777


Q ss_pred             CCCeEEEEECC-CCcccccccccccc-CcCeEEEeeCC---eEEEeE--------eeccc--CcccceeEeec-CC----
Q 037288          316 RNGAIVTVDVR-KRQRGCSSRAGRRH-RIPYSRLQRND---RVTNEQ--------WFELK--ANIWPSHTTFM-PS----  375 (513)
Q Consensus       316 ~dg~i~iwd~~-~~~~~~~~~~~~~h-~~~v~~v~~~~---~~~s~~--------w~~~~--~~~~~~~~~~~-~~----  375 (513)
                      .++.|.+||+. .++... ...+..+ ...+..++|+|   .++...        |+...  +.......+.. +.    
T Consensus       160 ~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSE-QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             TTTEEEEEEECTTSCEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             CCCEEEEEEECCCCcEEE-eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            78999999998 333221 2222222 23577899998   344432        66553  33322222221 21    


Q ss_pred             -CceEEEEEcCCCCEEE-EEecCCeEEEEecCCC-CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-CcEEEE--e
Q 037288          376 -SISCLQSLQLYDQYFL-ASSMDGTVKLYDHRLT-TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-CKLRIW--S  449 (513)
Q Consensus       376 -~v~~~~~~~~~~~~l~-s~s~dg~i~lwd~~~~-~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-g~v~vw--d  449 (513)
                       ....-+.++|+|++|+ +...++.|.+||+... ....+..+..+...+..  ++|+|+|++|++++.+ +.|.+|  |
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~--~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRD--FDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCE--EEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCe--EEECCCCCEEEEEEcCCCcEEEEEEe
Confidence             1233358899999875 5556899999998621 11245555555555555  8899999999888765 899999  6


Q ss_pred             CCCCeEEEE
Q 037288          450 IRSGELVFE  458 (513)
Q Consensus       450 ~~~~~~~~~  458 (513)
                      ..++++...
T Consensus       317 ~~tg~l~~~  325 (347)
T 3hfq_A          317 LTSGKLSLL  325 (347)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCeEEec
Confidence            667776543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.65  E-value=1.1e-15  Score=154.50  Aligned_cols=160  Identities=9%  Similarity=0.037  Sum_probs=118.5

Q ss_pred             cccCcEEEEEEcCCCCEEE----EEe-CCeEEEEECCCC--------cE---EEEee-eCCCeEEEEEecC-CcEEEEEe
Q 037288          254 SFKCTVWTADFCTNPSQAV----IGT-NLGAAMVDMETG--------MA---SWVCR-SKSDILAQQVIHS-GNVVLCGF  315 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~----s~s-~~~i~vwd~~~~--------~~---~~~~~-~~~~V~~l~~~~~-~~~l~sg~  315 (513)
                      .|...|.+++|+|+|++|+    +|+ |+.|+|||+.++        +.   ...+. |...|.+++|+|+ +++|++|+
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4667899999999999999    565 445999998754        21   22222 7788999999998 79999999


Q ss_pred             CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      .||+|++||++++..   +....+|...|.++                                  .|+|+|++|++|+.
T Consensus       170 ~Dg~v~iwD~~~~~~---~~~~~~~~~~v~~v----------------------------------~wspdg~~lasgs~  212 (434)
T 2oit_A          170 ADGSIAVLQVTETVK---VCATLPSTVAVTSV----------------------------------CWSPKGKQLAVGKQ  212 (434)
T ss_dssp             TTSCEEEEEESSSEE---EEEEECGGGCEEEE----------------------------------EECTTSSCEEEEET
T ss_pred             CCCeEEEEEcCCCcc---eeeccCCCCceeEE----------------------------------EEcCCCCEEEEEcC
Confidence            999999999998743   22444566666664                                  55679999999999


Q ss_pred             CCeEEEEecCCCCccceEEecCCCC-----ceeEEEEEEcCCCCEEEE-EeCCCc------EEEEeCCCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVN-----SHTRIQLGVDQSERFVMS-GGEDCK------LRIWSIRSG  453 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~-----~v~~~~~~~s~~g~~l~s-g~~Dg~------v~vwd~~~~  453 (513)
                      ||.|++||++   ......+..|..     .+...+++|++++.++++ +..||.      +++|++...
T Consensus       213 dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          213 NGTVVQYLPT---LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TSCEEEECTT---CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcEEEEccC---CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999999986   223444544322     234556899998887754 334433      899999865

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=5.1e-14  Score=137.65  Aligned_cols=217  Identities=9%  Similarity=0.030  Sum_probs=156.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe--------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEE-EEEeCCCeEEEEEC
Q 037288          255 FKCTVWTADFCTNPSQAVIGT--------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVV-LCGFRNGAIVTVDV  325 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s--------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l-~sg~~dg~i~iwd~  325 (513)
                      ....+..++|+|+++.+++++        ++.|.+||..+++.+..+.....+.+++|+|+|+.+ +++..++.|.+||+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            446788999999999888765        446999999999988888877778999999999854 55556899999999


Q ss_pred             CCCccccccccccccCc---------CeEEEeeCC---eEEEeE---------eecccCcccceeEee-cCCCceEEEEE
Q 037288          326 RKRQRGCSSRAGRRHRI---------PYSRLQRND---RVTNEQ---------WFELKANIWPSHTTF-MPSSISCLQSL  383 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~---------~v~~v~~~~---~~~s~~---------w~~~~~~~~~~~~~~-~~~~v~~~~~~  383 (513)
                      .+++...   .+..+..         .+.++.|+|   .++.+.         |+...++..  ..+. ....+.+ ..+
T Consensus       119 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~-~~~  192 (353)
T 3vgz_A          119 KTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK--TAIQNTGKMSTG-LAL  192 (353)
T ss_dssp             TTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE--EEECCCCTTCCC-CEE
T ss_pred             CCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE--EEecCCCCccce-EEE
Confidence            9887533   3333321         267899988   344333         555544432  2333 2223444 478


Q ss_pred             cCCCCEEEEEecCCeEEEEecCCCCccceEEecC----CCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEE
Q 037288          384 QLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG----HVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSIRSGELVFE  458 (513)
Q Consensus       384 ~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~----h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~~~~~~~~  458 (513)
                      +|+++++++++.++.|.+||+.  ....+..+..    +...+  ..++|+|+|++|++++. ++.|.+||+.+++.+..
T Consensus       193 s~dg~~l~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEGKRLYTTNADGELITIDTA--DNKILSRKKLLDDGKEHFF--INISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTTTEEEEECTTSEEEEEETT--TTEEEEEEECCCSSSCCCE--EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECC--CCeEEEEEEcCCCCCCccc--ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            8999999999999999999996  4445555543    33333  34889999998777665 49999999999999888


Q ss_pred             ecCCCCCeEEEEEcCCCc-eEEeeCC
Q 037288          459 DKFSNSVPSAVCWRTQRS-MGPQIEG  483 (513)
Q Consensus       459 ~~~~~~~v~~v~~~p~~~-~~~t~~~  483 (513)
                      +....  ...++|+|++. ++++...
T Consensus       269 ~~~~~--~~~~~~s~dg~~l~v~~~~  292 (353)
T 3vgz_A          269 VAAPE--SLAVLFNPARNEAYVTHRQ  292 (353)
T ss_dssp             EECSS--CCCEEEETTTTEEEEEETT
T ss_pred             EEcCC--CceEEECCCCCEEEEEECC
Confidence            76544  25799999964 6666643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.65  E-value=2.1e-15  Score=158.65  Aligned_cols=215  Identities=7%  Similarity=-0.000  Sum_probs=152.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeC---CCeEEEEECCC--
Q 037288          256 KCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFR---NGAIVTVDVRK--  327 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~---dg~i~iwd~~~--  327 (513)
                      ..+|++++|+|||+.||+++  ++++.||++.+++...+..+. ..+.+++|+|| +++++++.   +....+|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            45899999999999999764  667999999888777666666 47999999999 88888875   55556655543  


Q ss_pred             CccccccccccccCcCeEEEeeCC--eEEE-eE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC--
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND--RVTN-EQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD--  396 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~--~~~s-~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d--  396 (513)
                      ......+....++.  +.++.++.  .+++ ++      |++..++...  ....+.  .+ ..++|+|++|++++.+  
T Consensus       100 ~g~~~~l~~~~~~~--~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~--l~~~~~--~~-~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A          100 PGEEQRLEAVKPMR--ILSGVDTGEAVVFTGATEDRVALYALDGGGLRE--LARLPG--FG-FVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             TTCCEECTTSCSBE--EEEEEECSSCEEEEEECSSCEEEEEEETTEEEE--EEEESS--CE-EEEEEETTEEEEEEEEET
T ss_pred             CCccccccCCCCce--eeeeCCCCCeEEEEecCCCCceEEEccCCcEEE--eecCCC--ce-EEECCCCCEEEEEEEcCC
Confidence            22111122222222  33444444  2333 32      7776665322  222222  33 4789999999988877  


Q ss_pred             --CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecCCCCCeEEEE--
Q 037288          397 --GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC--KLRIWSIRSGELVFEDKFSNSVPSAVC--  470 (513)
Q Consensus       397 --g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg--~v~vwd~~~~~~~~~~~~~~~~v~~v~--  470 (513)
                        +.|++||+.   .+....+..|...+..  ++|+|||++|+++..++  .|++||+.+++.. .+..+...+..++  
T Consensus       173 ~~~~i~~~d~~---~g~~~~l~~~~~~~~~--~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          173 GRVSLFTSNLS---SGGLRVFDSGEGSFSS--ASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             TEEEEEEEETT---TCCCEEECCSSCEEEE--EEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             CCeEEEEEcCC---CCCceEeecCCCcccc--ceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence              789999985   4445677888877655  89999999999888898  8999999999887 7667766677777  


Q ss_pred             ------EcCCCceEEeeCCC
Q 037288          471 ------WRTQRSMGPQIEGK  484 (513)
Q Consensus       471 ------~~p~~~~~~t~~~~  484 (513)
                            |+|++.++++...+
T Consensus       247 ~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             EEEEEEECTTSCEEEEEEET
T ss_pred             cccceeEcCCCcEEEEEEcC
Confidence                  99998766666544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.64  E-value=1.9e-15  Score=163.10  Aligned_cols=214  Identities=5%  Similarity=-0.056  Sum_probs=153.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCC----CeEEEEEecCCcEEEEEeCC---------CeEEEEE
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKS----DILAQQVIHSGNVVLCGFRN---------GAIVTVD  324 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~----~V~~l~~~~~~~~l~sg~~d---------g~i~iwd  324 (513)
                      .+.+++|+|||++++++.+++|++||+.+++...++.+..    .|.+++|+|||+.|++++.+         +.+++||
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            4678899999998877667789999999998777776443    39999999999999998764         7889999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeec-CCCc-----------------
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFM-PSSI-----------------  377 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~-~~~v-----------------  377 (513)
                      +.+++... +....+|...+..++|+|   .++.++      |+...+...  ..... ...+                 
T Consensus        98 ~~~~~~~~-l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           98 IPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI--RVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             SSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE--EEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             CCCCceEe-ccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE--EEecCCCCCceECcccceeEEEEeccC
Confidence            99886533 445556677789999999   555554      666555432  11111 1122                 


Q ss_pred             eEEEEEcCCCCEEEEEecCC----------------------------------eEEEEecCCCCccceEEecCC-----
Q 037288          378 SCLQSLQLYDQYFLASSMDG----------------------------------TVKLYDHRLTTRGAVQSYEGH-----  418 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg----------------------------------~i~lwd~~~~~~~~~~~~~~h-----  418 (513)
                      ....+|+|+|++|++++.|+                                  .|++||+.  .......+..+     
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~--~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN--GPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS--SSCCCEECCCCCCGGG
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC--CCceeEEeeCCccCCC
Confidence            13358999999999988653                                  79999986  33344566554     


Q ss_pred             -CCceeEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCeEEEEecC-CCCCe----EEEEEcCCCceE
Q 037288          419 -VNSHTRIQLGVDQSERFVMSGGE----DCKLRIWSIRSGELVFEDKF-SNSVP----SAVCWRTQRSMG  478 (513)
Q Consensus       419 -~~~v~~~~~~~s~~g~~l~sg~~----Dg~v~vwd~~~~~~~~~~~~-~~~~v----~~v~~~p~~~~~  478 (513)
                       ...+  ..++|+|||++|++.+.    +..|++||+.++++...+.. +...+    ..++|+|++..+
T Consensus       253 ~~~~~--~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  320 (723)
T 1xfd_A          253 REYYI--TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (723)
T ss_dssp             SSEEE--EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             cccee--EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeE
Confidence             3334  44899999998877653    35799999999987766533 33333    378999996533

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.64  E-value=1.7e-14  Score=155.20  Aligned_cols=218  Identities=10%  Similarity=0.008  Sum_probs=152.8

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC-----Cccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK-----RQRG  331 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~  331 (513)
                      ..|.+++|+|| ..++.+.++.+++||+.+++...+..+...+.+++|+|||+.|+.+ .|+.|++||+.+     ++..
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence            57999999999 7777778889999999999887777777789999999999998885 789999999987     6542


Q ss_pred             cccccccccCcC--------------eEEEeeCC---eEEEeE-------------------------------------
Q 037288          332 CSSRAGRRHRIP--------------YSRLQRND---RVTNEQ-------------------------------------  357 (513)
Q Consensus       332 ~~~~~~~~h~~~--------------v~~v~~~~---~~~s~~-------------------------------------  357 (513)
                      .   ....+...              +.++.|+|   .++.++                                     
T Consensus       160 ~---~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          160 A---VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             E---SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             E---eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            2   22223222              47899998   454443                                     


Q ss_pred             ---eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-----eEEEEecCCCCccceEEec--CCCCc---eeE
Q 037288          358 ---WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG-----TVKLYDHRLTTRGAVQSYE--GHVNS---HTR  424 (513)
Q Consensus       358 ---w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-----~i~lwd~~~~~~~~~~~~~--~h~~~---v~~  424 (513)
                         |+...+...................|+|+|++|++++.++     .|++||+.  .......+.  .+...   +..
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~--~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE--TGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT--TCCEEEEEEEEECSSCCCCCSC
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC--CCceeeEEEEccCCCeECccCC
Confidence               4443333211111001112233358899999999988776     89999996  331333322  12211   223


Q ss_pred             EEEEEcC--CCCEEEEEeCCCcEEEEeCC-CCeEEEEecCCCCCeEE-EEEcCCCc-eEEeeCC
Q 037288          425 IQLGVDQ--SERFVMSGGEDCKLRIWSIR-SGELVFEDKFSNSVPSA-VCWRTQRS-MGPQIEG  483 (513)
Q Consensus       425 ~~~~~s~--~g~~l~sg~~Dg~v~vwd~~-~~~~~~~~~~~~~~v~~-v~~~p~~~-~~~t~~~  483 (513)
                        +.|+|  +|++|++++.|+.++||.+. ++..+..+..+...+.. ++|+|++. +++++..
T Consensus       315 --~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          315 --LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             --CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             --ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence              68999  99999999999999999886 67777888777777876 89999964 4444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.63  E-value=3.3e-14  Score=159.72  Aligned_cols=185  Identities=12%  Similarity=0.170  Sum_probs=142.5

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeee------------CCCeEEEEEe-cCCcEEEEEeCC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRS------------KSDILAQQVI-HSGNVVLCGFRN  317 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~------------~~~V~~l~~~-~~~~~l~sg~~d  317 (513)
                      .+..|. .+...+|+|+|+.++++.++.|.+||+...... .+..            ...+.+++|+ |||+.|++++ +
T Consensus       240 ~l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~  316 (1045)
T 1k32_A          240 KHTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R  316 (1045)
T ss_dssp             ECCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T
T ss_pred             EecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-c
Confidence            344454 466779999999999999999999999655443 3322            2368999999 9999888887 8


Q ss_pred             CeEEEEECCCCccccccccccccCc-CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          318 GAIVTVDVRKRQRGCSSRAGRRHRI-PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       318 g~i~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      +.|.+|++..+..    ..+..|.. .+..                                  ..|+ +|+.|++++.+
T Consensus       317 ~~i~~~~~~~~~~----~~~~~~~~~~~~~----------------------------------~~~s-dg~~l~~~s~~  357 (1045)
T 1k32_A          317 GQAFIQDVSGTYV----LKVPEPLRIRYVR----------------------------------RGGD-TKVAFIHGTRE  357 (1045)
T ss_dssp             TEEEEECTTSSBE----EECSCCSCEEEEE----------------------------------ECSS-SEEEEEEEETT
T ss_pred             CEEEEEcCCCCce----EEccCCCcceEEe----------------------------------eeEc-CCCeEEEEECC
Confidence            8999999986652    23444443 4444                                  3567 88899998888


Q ss_pred             CeEE-EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288          397 GTVK-LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       397 g~i~-lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                      +.+. +||+.   .+....+.+|...+..  ++|+|||++|++++.|+.|++||+.+++.......|...+..++|+|++
T Consensus       358 ~~l~~~~d~~---~~~~~~l~~~~~~~~~--~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG  432 (1045)
T 1k32_A          358 GDFLGIYDYR---TGKAEKFEENLGNVFA--MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS  432 (1045)
T ss_dssp             EEEEEEEETT---TCCEEECCCCCCSEEE--EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred             CceEEEEECC---CCCceEecCCccceee--eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC
Confidence            8888 88985   3344555577666655  8999999999999999999999999999888877788889999999998


Q ss_pred             ceEEeeC
Q 037288          476 SMGPQIE  482 (513)
Q Consensus       476 ~~~~t~~  482 (513)
                      ..++...
T Consensus       433 ~~la~~~  439 (1045)
T 1k32_A          433 RFIAYGF  439 (1045)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEe
Confidence            7665554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.61  E-value=2.3e-13  Score=132.17  Aligned_cols=213  Identities=9%  Similarity=0.101  Sum_probs=137.2

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC--CeEEEEECC--CCcE--EEEeee
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN--LGAAMVDME--TGMA--SWVCRS  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~--~~i~vwd~~--~~~~--~~~~~~  295 (513)
                      .++.+.+|++......          .......|...+.+++|+|+|++|++++.  +.|.+|++.  +++.  +..+..
T Consensus        13 ~~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGAL----------TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             GGTEEEEEEECTTSCE----------EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             CCCeEEEEEECCCCcE----------EEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence            4678888877531110          11223456778999999999998887754  579999997  6653  333444


Q ss_pred             CCCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          296 KSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                      ...+.+++|+|+++.|++++. ++.|.+||+..+........                                  +...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------------------------~~~~  128 (343)
T 1ri6_A           83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV----------------------------------VEGL  128 (343)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE----------------------------------ECCC
T ss_pred             CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc----------------------------------ccCC
Confidence            457899999999997766655 89999999953221110111                                  1111


Q ss_pred             CCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccce---E--EecCCC-CceeEEEEEEcCCCCEEEEEe-CCCcEE
Q 037288          375 SSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAV---Q--SYEGHV-NSHTRIQLGVDQSERFVMSGG-EDCKLR  446 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~---~--~~~~h~-~~v~~~~~~~s~~g~~l~sg~-~Dg~v~  446 (513)
                      ..+.+ ..++|+++++++++ .++.|.+||+.  ..+.+   .  .+..+. ..+.  .++|+|+|++|++++ .++.|.
T Consensus       129 ~~~~~-~~~s~dg~~l~~~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~pdg~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          129 DGCHS-ANISPDNRTLWVPALKQDRICLFTVS--DDGHLVAQDPAEVTTVEGAGPR--HMVFHPNEQYAYCVNELNSSVD  203 (343)
T ss_dssp             TTBCC-CEECTTSSEEEEEEGGGTEEEEEEEC--TTSCEEEEEEEEEECSTTCCEE--EEEECTTSSEEEEEETTTTEEE
T ss_pred             CCceE-EEECCCCCEEEEecCCCCEEEEEEec--CCCceeeecccccccCCCCCcc--eEEECCCCCEEEEEeCCCCEEE
Confidence            22222 36788999888887 89999999996  32322   1  333332 2333  388999999776554 789999


Q ss_pred             EEeCCC--CeE--EEEec---CC---CCCeEEEEEcCCC-ceEEeeCC
Q 037288          447 IWSIRS--GEL--VFEDK---FS---NSVPSAVCWRTQR-SMGPQIEG  483 (513)
Q Consensus       447 vwd~~~--~~~--~~~~~---~~---~~~v~~v~~~p~~-~~~~t~~~  483 (513)
                      +|++..  ++.  .....   ..   ...+..++|+|++ .++++...
T Consensus       204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence            999953  433  22222   11   2356789999996 45555543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.60  E-value=2e-13  Score=132.41  Aligned_cols=204  Identities=8%  Similarity=0.005  Sum_probs=138.0

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcE-EEEeeeCCC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMA-SWVCRSKSD  298 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~-~~~~~~~~~  298 (513)
                      .++.+.+|++.+...            ...+..+...+ .++|+|+|+++++++  ++.|.+||+.+++. ...+.....
T Consensus        18 ~~~~v~~~d~~~~~~------------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~   84 (331)
T 3u4y_A           18 HLRRISFFSTDTLEI------------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS   84 (331)
T ss_dssp             GGTEEEEEETTTCCE------------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS
T ss_pred             CCCeEEEEeCcccce------------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC
Confidence            456777777664332            22233445566 999999999666553  55799999999986 555555455


Q ss_pred             eEE-EEEecCCcEEEEEeCCC---eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          299 ILA-QQVIHSGNVVLCGFRNG---AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       299 V~~-l~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                      ... ++|+|+|++|+++..++   .|.+||+.+++...   .+                                  ...
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~---~~----------------------------------~~~  127 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS---TI----------------------------------PIP  127 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE---EE----------------------------------ECC
T ss_pred             CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE---EE----------------------------------ECC
Confidence            445 99999999888665553   99999998776422   11                                  112


Q ss_pred             CCceEEEEEcCCCCEEEEE-ecCCe-EEEEecCCCCccce-----EEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEE
Q 037288          375 SSISCLQSLQLYDQYFLAS-SMDGT-VKLYDHRLTTRGAV-----QSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLR  446 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~-s~dg~-i~lwd~~~~~~~~~-----~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~  446 (513)
                      ....+ ..++|+|++++++ ..++. |.+|++.  ..+.+     ..+. .....  ..++|+|+|++|+.+ ..++.|+
T Consensus       128 ~~~~~-~~~spdg~~l~~~~~~~~~~i~~~~~~--~~g~~~~~~~~~~~-~~~~~--~~~~~spdg~~l~v~~~~~~~v~  201 (331)
T 3u4y_A          128 YDAVG-IAISPNGNGLILIDRSSANTVRRFKID--ADGVLFDTGQEFIS-GGTRP--FNITFTPDGNFAFVANLIGNSIG  201 (331)
T ss_dssp             TTEEE-EEECTTSSCEEEEEETTTTEEEEEEEC--TTCCEEEEEEEEEC-SSSSE--EEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCccc-eEECCCCCEEEEEecCCCceEEEEEEC--CCCcEeecCCcccc-CCCCc--cceEECCCCCEEEEEeCCCCeEE
Confidence            22222 4778899865554 55588 9999986  33322     2222 22233  348999999966555 4689999


Q ss_pred             EEeCCCCeE---EEEecCCCCCeEEEEEcCCCc-eEEeeC
Q 037288          447 IWSIRSGEL---VFEDKFSNSVPSAVCWRTQRS-MGPQIE  482 (513)
Q Consensus       447 vwd~~~~~~---~~~~~~~~~~v~~v~~~p~~~-~~~t~~  482 (513)
                      +||+.+++.   +..+..+ ..+..++|+|++. ++++..
T Consensus       202 v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          202 ILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             EEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred             EEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence            999999988   7777653 5678999999976 555544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.58  E-value=2.5e-12  Score=126.41  Aligned_cols=221  Identities=6%  Similarity=-0.001  Sum_probs=140.8

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeC-----CeEEEEECCC--CcEEEE--ee-eCCCeEEEEEecCCcEEEEEe-CCCeEEEE
Q 037288          255 FKCTVWTADFCTNPSQAVIGTN-----LGAAMVDMET--GMASWV--CR-SKSDILAQQVIHSGNVVLCGF-RNGAIVTV  323 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~-----~~i~vwd~~~--~~~~~~--~~-~~~~V~~l~~~~~~~~l~sg~-~dg~i~iw  323 (513)
                      +...+..++|+|+|++|++++.     +.|.+|++..  +....+  .. +......+++  +++.|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            6677888999999998887765     4699998765  543332  22 3345777777  787776666 58999999


Q ss_pred             ECCCCccccccccc---c--------ccCcCeEEEeeCC---eEEEeE--------eecccCc-------ccc-----ee
Q 037288          324 DVRKRQRGCSSRAG---R--------RHRIPYSRLQRND---RVTNEQ--------WFELKAN-------IWP-----SH  369 (513)
Q Consensus       324 d~~~~~~~~~~~~~---~--------~h~~~v~~v~~~~---~~~s~~--------w~~~~~~-------~~~-----~~  369 (513)
                      ++........+...   .        .+...+.+++|+|   .++...        |++....       +..     ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754432111111   1        1123457899999   344443        6555333       111     11


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecC---CCCceeEEEEEEcCCCCEEEEEeCC--C
Q 037288          370 TTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEG---HVNSHTRIQLGVDQSERFVMSGGED--C  443 (513)
Q Consensus       370 ~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~---h~~~v~~~~~~~s~~g~~l~sg~~D--g  443 (513)
                      .......... +.|+|+|+++++++ .++.|.+||+.......+..+..   +....  ..++|+|||++|+++..+  +
T Consensus       206 ~~~~~~~~~~-~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~--~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          206 KVAPGSGPRH-LIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS--GDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             ECCTTCCEEE-EEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE--EEEEECTTSSEEEEEECSSSC
T ss_pred             ecCCCCCCeE-EEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc--ccEEECCCCCEEEEECCCCCC
Confidence            1222334444 58899999887777 68999999986211112333332   22233  348999999999777665  8


Q ss_pred             cEEEEeCC--CCe--EEEEecCCCCCeEEEEEcCCCc-eEEee
Q 037288          444 KLRIWSIR--SGE--LVFEDKFSNSVPSAVCWRTQRS-MGPQI  481 (513)
Q Consensus       444 ~v~vwd~~--~~~--~~~~~~~~~~~v~~v~~~p~~~-~~~t~  481 (513)
                      .|.+|++.  +++  .+..+.. ...+..++|+|++. +++++
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence            99999995  455  4444544 55688999999975 44444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.58  E-value=7.4e-12  Score=123.01  Aligned_cols=215  Identities=10%  Similarity=-0.008  Sum_probs=133.8

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEE----EEeee-----------CCCeEEEEEecCCcEEEEE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMAS----WVCRS-----------KSDILAQQVIHSGNVVLCG  314 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~----~~~~~-----------~~~V~~l~~~~~~~~l~sg  314 (513)
                      ...+......+++  ++++++++.  ++.|.+|++.....+    ....+           ...+.+++|+|+|+.|+++
T Consensus        95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~  172 (361)
T 3scy_A           95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD  172 (361)
T ss_dssp             EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred             eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence            3345556777777  888777664  556999999754321    11111           1235889999999866555


Q ss_pred             e-CCCeEEEEECCCCcc------ccc----cccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEee
Q 037288          315 F-RNGAIVTVDVRKRQR------GCS----SRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTF  372 (513)
Q Consensus       315 ~-~dg~i~iwd~~~~~~------~~~----~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~  372 (513)
                      + .++.|.+|++.....      ...    ......+...+..++|+|   .++...        |+...+.+.....+.
T Consensus       173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~  252 (361)
T 3scy_A          173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA  252 (361)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred             eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence            4 589999999875542      100    011223345578899999   343333        777655443333332


Q ss_pred             cC----CCceEEEEEcCCCCEEEEEecC--CeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCC
Q 037288          373 MP----SSISCLQSLQLYDQYFLASSMD--GTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDC  443 (513)
Q Consensus       373 ~~----~~v~~~~~~~~~~~~l~s~s~d--g~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg  443 (513)
                      ..    ... .-+.++|+|++|+++..+  +.|.+|++......  .+..+.. ...+..  ++|+|+|++|++++ .++
T Consensus       253 ~~~~~~~~~-~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~--~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          253 ADTVNAQGS-GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRN--FIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             SCSSCCCCE-EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCE--EEECTTSCEEEEEETTTT
T ss_pred             cCCCCCCCc-ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCce--EEECCCCCEEEEEECCCC
Confidence            21    123 335799999998776654  89999998521222  3444443 233344  89999999998887 578


Q ss_pred             cEEEE--eCCCCeEEEEe-cCCCCCeEEEEEc
Q 037288          444 KLRIW--SIRSGELVFED-KFSNSVPSAVCWR  472 (513)
Q Consensus       444 ~v~vw--d~~~~~~~~~~-~~~~~~v~~v~~~  472 (513)
                      .|.+|  |..++++.... ..+...+.+++|.
T Consensus       329 ~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          329 VIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99995  55677766543 2234568888885

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.57  E-value=5.1e-13  Score=129.42  Aligned_cols=211  Identities=9%  Similarity=-0.078  Sum_probs=140.9

Q ss_pred             cEEEEEEcCCCCEEEE-Ee-CCeEEEEECCCCcEEEEeeeCC------CeEEEEEecCCcEEEEEe------------CC
Q 037288          258 TVWTADFCTNPSQAVI-GT-NLGAAMVDMETGMASWVCRSKS------DILAQQVIHSGNVVLCGF------------RN  317 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s-~s-~~~i~vwd~~~~~~~~~~~~~~------~V~~l~~~~~~~~l~sg~------------~d  317 (513)
                      .+..++|+|+|+.+++ +. ++.|.+||+.+++.+..+....      .+.+++|+|+|+.|+++.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            4788999999986654 43 4569999999998877665433      678899999999888886            57


Q ss_pred             CeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-----eecccCcccceeEeecCCCceEEEEEcCCCCE
Q 037288          318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-----WFELKANIWPSHTTFMPSSISCLQSLQLYDQY  389 (513)
Q Consensus       318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-----w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  389 (513)
                      +.|.+||+.+++...   .+.. ...+..+.|+|   .++.+.     |+...++.  ...+........ ..++|++..
T Consensus       115 ~~i~v~d~~~~~~~~---~~~~-~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~-~~~s~dg~~  187 (337)
T 1pby_B          115 TRVALYDAETLSRRK---AFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTL--VEDKPIQSWEAE-TYAQPDVLA  187 (337)
T ss_dssp             CEEEEEETTTTEEEE---EEEC-CSSCCCEEECTTSSCEEEESSSEEEEETTTTEE--EEEECSTTTTTT-TBCCCBCCC
T ss_pred             ceEEEEECCCCcEEE---EEeC-CCCcceeEECCCCCEEEEeCCeEEEEECCCCcE--eeeeeccccCCC-ceeCCCccE
Confidence            999999998776432   3322 34567778887   344433     55544432  122222221222 256677775


Q ss_pred             EEEEecC-C-----------------------eEEEEecCCCCccc-eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          390 FLASSMD-G-----------------------TVKLYDHRLTTRGA-VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       390 l~s~s~d-g-----------------------~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                      ++.++.+ +                       .|.+||+.  .... ...+..+...+..  ++|+|+|++|+++  ++.
T Consensus       188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~--~~~s~dg~~l~~~--~~~  261 (337)
T 1pby_B          188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE--TGEMAMREVRIMDVFYFS--TAVNPAKTRAFGA--YNV  261 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT--TCCEEEEEEEECSSCEEE--EEECTTSSEEEEE--ESE
T ss_pred             EeeeccCCCceeeeeeccccccccccccccccceEEEeCC--CCCceEeecCCCCCceee--EEECCCCCEEEEe--CCe
Confidence            5544332 2                       46788886  3222 2233344444444  8999999999988  799


Q ss_pred             EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      |++||+.+++.+..+... ..+.+++|+|++..++.++
T Consensus       262 v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          262 LESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             EEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEES
T ss_pred             EEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEc
Confidence            999999999988887653 4578999999965444433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.54  E-value=6.3e-13  Score=129.52  Aligned_cols=221  Identities=9%  Similarity=-0.023  Sum_probs=146.7

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEecccc-CcEEEEEEcCCCCEEEEE--eCCeEEEEECCCCcEEEEeeeCC-
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFK-CTVWTADFCTNPSQAVIG--TNLGAAMVDMETGMASWVCRSKS-  297 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~g~~l~s~--s~~~i~vwd~~~~~~~~~~~~~~-  297 (513)
                      .++.+.++++.+...            +..+..+. ..+..++|+|+|++++++  .++.|.+||+.+++....+.... 
T Consensus        19 ~~~~v~~~d~~~~~~------------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B           19 YPNNLHVVDVASDTV------------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             TTTEEEEEETTTTEE------------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCeEEEEECCCCcE------------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            367788887764322            12222221 257789999999866544  35569999999998776665322 


Q ss_pred             ------CeEEEEEecCCcEEEEEeCC------------CeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE
Q 037288          298 ------DILAQQVIHSGNVVLCGFRN------------GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ  357 (513)
Q Consensus       298 ------~V~~l~~~~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~  357 (513)
                            .+.+++|+|+|+.|++++.+            +.|.+||+.+++....+..+. +...+.+++|+|  .++.++
T Consensus        87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~~~  165 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAG  165 (349)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEES
T ss_pred             cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEEcc
Confidence                  27899999999999988865            999999998754322122222 333578888988  444433


Q ss_pred             -----eecccCcccceeEeec-----------------------------------------------------------
Q 037288          358 -----WFELKANIWPSHTTFM-----------------------------------------------------------  373 (513)
Q Consensus       358 -----w~~~~~~~~~~~~~~~-----------------------------------------------------------  373 (513)
                           |+...++.........                                                           
T Consensus       166 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  245 (349)
T 1jmx_B          166 PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT  245 (349)
T ss_dssp             SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred             CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcE
Confidence                 6655444221110000                                                           


Q ss_pred             -------CCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288          374 -------PSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKL  445 (513)
Q Consensus       374 -------~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v  445 (513)
                             .........++| ++++++++  ++.|.+||+.  ....+..+..+. .+..  ++|+|+|++|++++.++.|
T Consensus       246 ~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~--~~~~~~~~~~~~-~~~~--~~~s~dg~~l~~~~~~~~v  318 (349)
T 1jmx_B          246 HTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK--QRKLIKAANLDH-TYYC--VAFDKKGDKLYLGGTFNDL  318 (349)
T ss_dssp             EEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETT--TTEEEEEEECSS-CCCE--EEECSSSSCEEEESBSSEE
T ss_pred             EecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECc--cCeEEEEEcCCC-Cccc--eEECCCCCEEEEecCCCeE
Confidence                   000111235678 99998888  8899999996  444555555332 2334  8999999999888889999


Q ss_pred             EEEeCCCCeEEEEecCC
Q 037288          446 RIWSIRSGELVFEDKFS  462 (513)
Q Consensus       446 ~vwd~~~~~~~~~~~~~  462 (513)
                      ++||+.+++.+..+...
T Consensus       319 ~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          319 AVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEETTTTEEEEEEECS
T ss_pred             EEEeccccceeeeeecC
Confidence            99999999998887654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=155.87  Aligned_cols=208  Identities=7%  Similarity=-0.025  Sum_probs=143.8

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCC----CeEEEEEecCCcEEEEEeC---------CCeEEEEECCC
Q 037288          261 TADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKS----DILAQQVIHSGNVVLCGFR---------NGAIVTVDVRK  327 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~----~V~~l~~~~~~~~l~sg~~---------dg~i~iwd~~~  327 (513)
                      +++|+|+|++++++.++.|++||+.+++...++.+..    .+.+++|+|||+.|+.++.         |+.|++||+.+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            6799999987777777889999999999887776443    3899999999999988876         79999999998


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCCCce----------------EEEE
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPSSIS----------------CLQS  382 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~~v~----------------~~~~  382 (513)
                      ++... ...+   ...+..+.|+|   .++.+.      |+...+.............+.                ...+
T Consensus       100 g~~~~-~~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A          100 GEFVR-GNEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TEECC-SSCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             Ccccc-ceec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            86521 1223   24688899999   555544      666555432110000111111                1358


Q ss_pred             EcCCCCEEEEEecCC----------------------------------eEEEEecCCCCccce--------EEecCCCC
Q 037288          383 LQLYDQYFLASSMDG----------------------------------TVKLYDHRLTTRGAV--------QSYEGHVN  420 (513)
Q Consensus       383 ~~~~~~~l~s~s~dg----------------------------------~i~lwd~~~~~~~~~--------~~~~~h~~  420 (513)
                      |+|||++|++++.|.                                  .|++||+.  .....        ..+.+|..
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT--YPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS--CHHHHCCEECCCCHHHHTSCE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC--CCCccceeEccCCccCCCCcc
Confidence            999999999988653                                  78899985  32221        12335666


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCC----CcEEEEe----CCCCeEEEEe----cCCCCCeE-----EEEEcCCCc
Q 037288          421 SHTRIQLGVDQSERFVMSGGED----CKLRIWS----IRSGELVFED----KFSNSVPS-----AVCWRTQRS  476 (513)
Q Consensus       421 ~v~~~~~~~s~~g~~l~sg~~D----g~v~vwd----~~~~~~~~~~----~~~~~~v~-----~v~~~p~~~  476 (513)
                      .+..  ++|+||++++++....    ..|++||    +.++++...+    ..+...+.     .++|+|++.
T Consensus       254 ~~~~--~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  324 (719)
T 1z68_A          254 YFSW--LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI  324 (719)
T ss_dssp             EEEE--EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             eEEE--eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC
Confidence            6655  8999998877764432    2488999    8887765444    35556565     789999965

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.52  E-value=1.7e-12  Score=127.98  Aligned_cols=226  Identities=7%  Similarity=-0.032  Sum_probs=144.5

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECC-CCcEEEEeeeC--CCeEEEEEecCCcE--EEEEe-------------CCC
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDME-TGMASWVCRSK--SDILAQQVIHSGNV--VLCGF-------------RNG  318 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~-~~~~~~~~~~~--~~V~~l~~~~~~~~--l~sg~-------------~dg  318 (513)
                      ..+..++|+|+|++|++++.+.|.+||+. +++......+.  +.+.+++|+|+|+.  ++++.             .+|
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            46788999999998887766699999997 78765444332  34667899999984  55553             689


Q ss_pred             eEEEEECCC-Ccccccccccc-ccCcCeEEEeeCC---eEEEeE--------eecc-cCcccceeEeec---CCCceEEE
Q 037288          319 AIVTVDVRK-RQRGCSSRAGR-RHRIPYSRLQRND---RVTNEQ--------WFEL-KANIWPSHTTFM---PSSISCLQ  381 (513)
Q Consensus       319 ~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~v~~~~---~~~s~~--------w~~~-~~~~~~~~~~~~---~~~v~~~~  381 (513)
                      .+.+|++.. ++....+..+. .+...+.+++|+|   .++++.        |+.. .++......+..   ...+.. +
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~-~  198 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW-V  198 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE-E
T ss_pred             eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE-e
Confidence            999999974 43221111111 2456789999999   344432        7776 455433233332   334555 4


Q ss_pred             EEcCCCCEEEEEec-CCeEEEEecCCCCccc---eEEec-------CCCC----ceeEEEEE-EcCCCCEEEEEeCCC--
Q 037288          382 SLQLYDQYFLASSM-DGTVKLYDHRLTTRGA---VQSYE-------GHVN----SHTRIQLG-VDQSERFVMSGGEDC--  443 (513)
Q Consensus       382 ~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~~---~~~~~-------~h~~----~v~~~~~~-~s~~g~~l~sg~~Dg--  443 (513)
                      .|+|+|+++++++. ++.|.+|++.......   ...+.       +|..    ......++ |+|||++|++++.+.  
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            78999999888775 7899999875211222   12222       1121    00234488 999999988776432  


Q ss_pred             ----cEEEEeCC-CCeEEEE---ecCCCCCeEEEEEcC---CCceEEeeCC
Q 037288          444 ----KLRIWSIR-SGELVFE---DKFSNSVPSAVCWRT---QRSMGPQIEG  483 (513)
Q Consensus       444 ----~v~vwd~~-~~~~~~~---~~~~~~~v~~v~~~p---~~~~~~t~~~  483 (513)
                          .|.+|++. ++++...   ...+...+..++|+|   ++.+++..+.
T Consensus       279 ~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~  329 (365)
T 1jof_A          279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence                89999996 6765542   333444567899999   6655554443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.51  E-value=3e-12  Score=124.69  Aligned_cols=210  Identities=8%  Similarity=-0.006  Sum_probs=141.4

Q ss_pred             EEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCC--CeEEEEEecCCcEE-EEEeCCCeEEEEECCCCcccccccc
Q 037288          261 TADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKS--DILAQQVIHSGNVV-LCGFRNGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~--~V~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~  336 (513)
                      .+++++++.++++++ ++.|.+||+.+++.+..+....  .+..++|+|+|+.+ +++..++.|.+||+.+++...   .
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~---~   80 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF---H   80 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---E
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE---E
Confidence            346777888888775 5669999999999887777555  68899999999855 455678999999998876533   2


Q ss_pred             ccc-c-----CcCeEEEeeCC---eEEEeE-------------------eecccCccc-ceeEeecCCCceEEEEEcCCC
Q 037288          337 GRR-H-----RIPYSRLQRND---RVTNEQ-------------------WFELKANIW-PSHTTFMPSSISCLQSLQLYD  387 (513)
Q Consensus       337 ~~~-h-----~~~v~~v~~~~---~~~s~~-------------------w~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  387 (513)
                      +.. +     ...+..++|+|   .++.+.                   |+...+... .......+..+.++ .++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~s~dg  159 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM-RAADDG  159 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE-EECTTS
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce-eECCCC
Confidence            221 1     23377888988   333322                   665554322 22344455555554 688999


Q ss_pred             CEEEEEecCCeEEEEecCCCCccceEEecCCC------------------------------------------------
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHV------------------------------------------------  419 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~------------------------------------------------  419 (513)
                      + +++++  +.|.+||+.  ....+..+..+.                                                
T Consensus       160 ~-l~~~~--~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVK--TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             C-EEEES--SSEEEECTT--TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             c-EEEcc--CcEEEEeCC--CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            9 55544  449999986  333444443221                                                


Q ss_pred             --------Cce----------eEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEe
Q 037288          420 --------NSH----------TRIQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       420 --------~~v----------~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t  480 (513)
                              +.+          ....++|+| +|++|+++  ++.|.+||+.+++.+..+... ..+.+++|+|++..++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEE
Confidence                    000          112356789 99999888  889999999999988887653 34779999999644333


Q ss_pred             eC
Q 037288          481 IE  482 (513)
Q Consensus       481 ~~  482 (513)
                      ++
T Consensus       312 ~~  313 (349)
T 1jmx_B          312 GG  313 (349)
T ss_dssp             ES
T ss_pred             ec
Confidence            33

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.50  E-value=1.2e-12  Score=141.11  Aligned_cols=215  Identities=7%  Similarity=-0.101  Sum_probs=139.3

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee--eCCCe-----------------EEEEEecCCcEEEEEeCC
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR--SKSDI-----------------LAQQVIHSGNVVLCGFRN  317 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V-----------------~~l~~~~~~~~l~sg~~d  317 (513)
                      ..+..++|||||+.||++.++.|++||+.+++...+..  +...|                 .+++|+|||+.|+.++.|
T Consensus       110 ~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             cccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            46888999999999999999999999999887655432  22222                 489999999999988765


Q ss_pred             C----------------------------------eEEEEECCCCccc---ccc---ccccccCcCeEEEeeCC--eEEE
Q 037288          318 G----------------------------------AIVTVDVRKRQRG---CSS---RAGRRHRIPYSRLQRND--RVTN  355 (513)
Q Consensus       318 g----------------------------------~i~iwd~~~~~~~---~~~---~~~~~h~~~v~~v~~~~--~~~s  355 (513)
                      .                                  .|++||+.+++..   . +   ..+.+|...+..++|+|  .++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~SpD~~~~~  268 (719)
T 1z68_A          190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE-VPVPAMIASSDYYFSWLTWVTDERVCL  268 (719)
T ss_dssp             CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE-CCCCHHHHTSCEEEEEEEESSSSEEEE
T ss_pred             CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE-ccCCccCCCCcceEEEeEEeCCCeEEE
Confidence            2                                  8899999877532   1 1   23557888999999999  3332


Q ss_pred             e-E-----------ee----cccCcccceeE---eecCCCce----EEEEEcCCCCEEEE--EecCCe--EEEEecCCCC
Q 037288          356 E-Q-----------WF----ELKANIWPSHT---TFMPSSIS----CLQSLQLYDQYFLA--SSMDGT--VKLYDHRLTT  408 (513)
Q Consensus       356 ~-~-----------w~----~~~~~~~~~~~---~~~~~~v~----~~~~~~~~~~~l~s--~s~dg~--i~lwd~~~~~  408 (513)
                      . .           |+    ...++......   ..+...+.    ....|+|+|+.|+.  +..+|.  |.+||+.   
T Consensus       269 ~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~---  345 (719)
T 1z68_A          269 QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT---  345 (719)
T ss_dssp             EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC---
T ss_pred             EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC---
Confidence            2 1           55    44444332221   12223333    13478999996554  445554  5666664   


Q ss_pred             ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC--Ce-EEEEecC----CCCCeEEEEEcCCCc
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRS--GE-LVFEDKF----SNSVPSAVCWRTQRS  476 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~--~~-~~~~~~~----~~~~v~~v~~~p~~~  476 (513)
                      .+....+..+...+..  +.++ +++.|+..+.+     +.+++|.+..  +. ....+..    +...+..+.|+|++.
T Consensus       346 ~~~~~~lt~~~~~v~~--~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~  422 (719)
T 1z68_A          346 VENAIQITSGKWEAIN--IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK  422 (719)
T ss_dssp             STTCEECSCSSSCEEE--EEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred             CCceEecccCceEEEE--EEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence            3345566655555544  4555 77777766654     8889998754  42 1233332    445678899999854


Q ss_pred             eE
Q 037288          477 MG  478 (513)
Q Consensus       477 ~~  478 (513)
                      .+
T Consensus       423 ~l  424 (719)
T 1z68_A          423 YY  424 (719)
T ss_dssp             SE
T ss_pred             EE
Confidence            33

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.47  E-value=4.8e-11  Score=117.42  Aligned_cols=229  Identities=10%  Similarity=0.010  Sum_probs=147.2

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-----------CCeEEEEECCCCcEE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-----------NLGAAMVDMETGMAS  290 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~  290 (513)
                      .++.+.+++..+...            +..+..+..+  .++|+|||++++++.           ++.|.+||+.+++.+
T Consensus        29 ~d~~v~v~D~~t~~~------------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~   94 (361)
T 2oiz_A           29 TESRVHVYDYTNGKF------------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE   94 (361)
T ss_dssp             GGCEEEEEETTTCCE------------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE
T ss_pred             ccCeEEEEECCCCeE------------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE
Confidence            366788887654322            2234444445  899999999888764           345999999999887


Q ss_pred             EEeee-------CCCeEEEEEecCCcEEEEEeC--CCeEEEEECCCCcccccccc-cccc--------------------
Q 037288          291 WVCRS-------KSDILAQQVIHSGNVVLCGFR--NGAIVTVDVRKRQRGCSSRA-GRRH--------------------  340 (513)
Q Consensus       291 ~~~~~-------~~~V~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~-~~~h--------------------  340 (513)
                      ..+..       ......++|+|||++|+++..  ++.|.+||+.+.+...   . +...                    
T Consensus        95 ~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~---~~i~~~~~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A           95 KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE---DVTAAAGCWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE---EEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred             EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE---EEecCCCcceeEEcCCCCeeEEEECC
Confidence            76652       234678999999999998874  6899999999876533   2 1110                    


Q ss_pred             CcCeEEEeeCC--eEE-Ee----E------------------------------eecccCcccceeEeec----------
Q 037288          341 RIPYSRLQRND--RVT-NE----Q------------------------------WFELKANIWPSHTTFM----------  373 (513)
Q Consensus       341 ~~~v~~v~~~~--~~~-s~----~------------------------------w~~~~~~~~~~~~~~~----------  373 (513)
                      .+.+..+++..  .+. ..    .                              ++...........+..          
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~  251 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW  251 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred             CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence            01111111111  000 00    0                              1110000000000000          


Q ss_pred             -CCCceEEEEEcCCCCEEEEEec-----------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC
Q 037288          374 -PSSISCLQSLQLYDQYFLASSM-----------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE  441 (513)
Q Consensus       374 -~~~v~~~~~~~~~~~~l~s~s~-----------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~  441 (513)
                       +.... ...++++++.+.++..           ++.|.+||+.  ..+.+.++..+.  ...  ++|+|+|++|++++.
T Consensus       252 ~p~g~~-~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~--t~~~v~~i~~~~--p~~--ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          252 VPGGYN-LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK--TKQRVARIPGRD--ALS--MTIDQQRNLMLTLDG  324 (361)
T ss_dssp             EECCSS-CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT--TTEEEEEEECTT--CCE--EEEETTTTEEEEECS
T ss_pred             ccCCee-EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC--CCcEEEEEecCC--eeE--EEECCCCCEEEEeCC
Confidence             00111 1367888787776643           3489999997  555788888776  444  899999999999887


Q ss_pred             CCcEEEEeCCCC--eEEEEecCCCCCeEEEEEcCCC
Q 037288          442 DCKLRIWSIRSG--ELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       442 Dg~v~vwd~~~~--~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                       ++|.+||+.++  +++..+.........++++|++
T Consensus       325 -~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          325 -GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             -SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             -CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence             99999999999  9999976667778999999984

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.45  E-value=2.1e-12  Score=139.66  Aligned_cols=211  Identities=8%  Similarity=0.015  Sum_probs=140.7

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCC-C-----eEEEEEecCCcEEEEEeCC---------CeEE
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKS-D-----ILAQQVIHSGNVVLCGFRN---------GAIV  321 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~-~-----V~~l~~~~~~~~l~sg~~d---------g~i~  321 (513)
                      .....+.|+|||++++++ +++|++||+.++++..++..+. .     ...++|+|||+.|+.++.+         +.+.
T Consensus        17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            345689999999999887 8889999999999877666322 2     2448899999999998876         6677


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCC---Cce-----------
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPS---SIS-----------  378 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~---~v~-----------  378 (513)
                      +||+.+++.    ..+..|...+...+|+|   .++.+.      |+...+...   .+...+   .+.           
T Consensus        96 ~~d~~~~~~----~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~---~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           96 IYDLNKRQL----ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY---RITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEETTTTEE----CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE---ECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEECCCCcE----EEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE---EEcCCCCccceecCcccccccch
Confidence            999998863    35677888899999999   455444      555544422   111111   111           


Q ss_pred             -----EEEEEcCCCCEEEEEecCC------------------------------------eEEEEecCCCC-cc--ceEE
Q 037288          379 -----CLQSLQLYDQYFLASSMDG------------------------------------TVKLYDHRLTT-RG--AVQS  414 (513)
Q Consensus       379 -----~~~~~~~~~~~l~s~s~dg------------------------------------~i~lwd~~~~~-~~--~~~~  414 (513)
                           ...+|+|||+.||.++.|.                                    .|++||+.... ..  ....
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~  248 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ  248 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence                 1257999999999886432                                    47778875200 21  2333


Q ss_pred             ec------CCCCceeEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCe----EEE--Ee--cCCCCCeE-----EEEE
Q 037288          415 YE------GHVNSHTRIQLGVDQSERFVMSGGE----DCKLRIWSIRSGE----LVF--ED--KFSNSVPS-----AVCW  471 (513)
Q Consensus       415 ~~------~h~~~v~~~~~~~s~~g~~l~sg~~----Dg~v~vwd~~~~~----~~~--~~--~~~~~~v~-----~v~~  471 (513)
                      +.      +|...+.  .++|+|||++++....    +..|++||+.+++    +..  .+  ..+...+.     .++|
T Consensus       249 l~~~~~~~~~~~~~~--~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          249 ITAPASMLIGDHYLC--DVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             ECCCHHHHTSCEEEE--EEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred             ecCCccCCCCCeEEE--EEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence            43      2554444  4899999997665432    3479999999887    211  11  33444443     7889


Q ss_pred             cCCCce
Q 037288          472 RTQRSM  477 (513)
Q Consensus       472 ~p~~~~  477 (513)
                      +|++..
T Consensus       327 spDG~~  332 (740)
T 4a5s_A          327 TLDGNS  332 (740)
T ss_dssp             CTTSSE
T ss_pred             cCCCCE
Confidence            999753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.44  E-value=1.5e-11  Score=121.79  Aligned_cols=167  Identities=8%  Similarity=-0.023  Sum_probs=104.9

Q ss_pred             CeEEEEECCCCcEEEEeeeCCCeEEEEEec-CCcEEEEEeCC------CeEEEEECCCCccccccccccccCc--CeEEE
Q 037288          277 LGAAMVDMETGMASWVCRSKSDILAQQVIH-SGNVVLCGFRN------GAIVTVDVRKRQRGCSSRAGRRHRI--PYSRL  347 (513)
Q Consensus       277 ~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v  347 (513)
                      ..|.+||+.+++...+..+...+..++|+| ||+.|+....+      ..|.++|+......    .+..+..  .+.. 
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~-  242 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTH-  242 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEE-
T ss_pred             ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCccccc-
Confidence            358999999998887777888899999999 99888776653      37888887655422    2222221  1222 


Q ss_pred             eeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC----eEEEEecCCCCccceEEecCCCCce
Q 037288          348 QRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG----TVKLYDHRLTTRGAVQSYEGHVNSH  422 (513)
Q Consensus       348 ~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg----~i~lwd~~~~~~~~~~~~~~h~~~v  422 (513)
                                                       ..|+|+|+.|+..+. ++    .|++||+.......+..+.++....
T Consensus       243 ---------------------------------~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~  289 (388)
T 3pe7_A          243 ---------------------------------EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM  289 (388)
T ss_dssp             ---------------------------------EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE
T ss_pred             ---------------------------------ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee
Confidence                                             367889997765543 22    3999999632222343444311000


Q ss_pred             eE-EEEEEcCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEecCCCC-----------CeEEEEEcCCCc-eEEe
Q 037288          423 TR-IQLGVDQSERFVMSG---------GEDCKLRIWSIRSGELVFEDKFSNS-----------VPSAVCWRTQRS-MGPQ  480 (513)
Q Consensus       423 ~~-~~~~~s~~g~~l~sg---------~~Dg~v~vwd~~~~~~~~~~~~~~~-----------~v~~v~~~p~~~-~~~t  480 (513)
                      .. -...|+|||+.|+..         ..+..|++||+.+++... +..+..           .+..++|+|++. ++.+
T Consensus       290 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~  368 (388)
T 3pe7_A          290 SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR-VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT  368 (388)
T ss_dssp             ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE-eccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence            00 003688999988754         456789999999987643 444444           478899999964 4444


Q ss_pred             eC
Q 037288          481 IE  482 (513)
Q Consensus       481 ~~  482 (513)
                      +.
T Consensus       369 s~  370 (388)
T 3pe7_A          369 SD  370 (388)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.43  E-value=1.7e-10  Score=110.02  Aligned_cols=226  Identities=8%  Similarity=-0.038  Sum_probs=148.7

Q ss_pred             eEEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +..+..+.....+++|+|+|+ +++++. +++|..||..++ ......+...+.+++++++|+++++...++.|.+||..
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            344556667789999999998 666664 567999999988 43333355669999999999988887778999999997


Q ss_pred             CCccccccc-cccc-cCcCeEEEeeCC--eEEE-----eE------------------eecccCcccceeEeecCCCceE
Q 037288          327 KRQRGCSSR-AGRR-HRIPYSRLQRND--RVTN-----EQ------------------WFELKANIWPSHTTFMPSSISC  379 (513)
Q Consensus       327 ~~~~~~~~~-~~~~-h~~~v~~v~~~~--~~~s-----~~------------------w~~~~~~~~~~~~~~~~~~v~~  379 (513)
                      +++... +. ...+ ....+..+++++  .++.     +.                  |..... .. ...+........
T Consensus        99 ~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~  175 (296)
T 3e5z_A           99 GGEWES-IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN  175 (296)
T ss_dssp             TCCEEE-EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred             CCcEEE-EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence            765432 11 1111 123456788887  3333     11                  222221 11 111112222223


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEecCCCCccce----EEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 037288          380 LQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV----QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL  455 (513)
Q Consensus       380 ~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~----~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~  455 (513)
                      -++++|+++.+++.+.++.|.+||+.  ..+.+    ..+..+......  ++++++|+++++.  ++.|.+||.. ++.
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~--~~g~~~~~~~~~~~~~~~p~~--i~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLN--ARGETEYQGVHFTVEPGKTDG--LRVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEEC--SSSCEEEEEEEECCSSSCCCS--EEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEEC--CCCcCcCCCeEeeCCCCCCCe--EEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            35789999988777778999999985  22222    333333333344  7889999876666  8899999986 788


Q ss_pred             EEEecCCCCCeEEEEE-cCC-CceEEeeCCCee
Q 037288          456 VFEDKFSNSVPSAVCW-RTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       456 ~~~~~~~~~~v~~v~~-~p~-~~~~~t~~~~~~  486 (513)
                      +..+..+.. +++++| .|+ ..+++++...+.
T Consensus       249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~  280 (296)
T 3e5z_A          249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFW  280 (296)
T ss_dssp             EEEEECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred             EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence            888777666 899999 577 456666665554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.42  E-value=1.3e-11  Score=131.77  Aligned_cols=190  Identities=9%  Similarity=-0.011  Sum_probs=129.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCC-----------eEEEEECCC------CcEEEEe-eeCCCeEEEEEecCCcEEEEEeC
Q 037288          255 FKCTVWTADFCTNPSQAVIGTNL-----------GAAMVDMET------GMASWVC-RSKSDILAQQVIHSGNVVLCGFR  316 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~~-----------~i~vwd~~~------~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~  316 (513)
                      |...+..++|+|||+.|++++.+           .|.+||+.+      +....+. .+...+.+++|+|||+.|+.++.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            66788999999999999877543           589999998      6665555 55666889999999999888775


Q ss_pred             C--------CeEEEEECC-CCccccccccc-cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC
Q 037288          317 N--------GAIVTVDVR-KRQRGCSSRAG-RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY  386 (513)
Q Consensus       317 d--------g~i~iwd~~-~~~~~~~~~~~-~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~  386 (513)
                      +        ..|++||+. ++.... ...+ .+|...+..                                  ..|+|+
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~-~~~l~~~~~~~~~~----------------------------------~~~spd  252 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFAD-TRTLLGGPEEAIAQ----------------------------------AEWAPD  252 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEE-EEEEEEETTBCEEE----------------------------------EEECTT
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccc-cEEeCCCCCceEcc----------------------------------eEECCC
Confidence            5        379999998 442111 1122 122333333                                  367789


Q ss_pred             CCEEEEEecCC--eEEEEecCCCCccceEEecCCCCcee-------EEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCeE
Q 037288          387 DQYFLASSMDG--TVKLYDHRLTTRGAVQSYEGHVNSHT-------RIQLGVDQSERFVMSGGEDCKLRIW--SIRSGEL  455 (513)
Q Consensus       387 ~~~l~s~s~dg--~i~lwd~~~~~~~~~~~~~~h~~~v~-------~~~~~~s~~g~~l~sg~~Dg~v~vw--d~~~~~~  455 (513)
                      |+++++++.++  .|.+||+.   .+....+..+...+.       ...++|+++++++++++. +.++||  |+.+++ 
T Consensus       253 g~l~~~~~~~~~~~l~~~~~~---~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-  327 (662)
T 3azo_A          253 GSLIVATDRTGWWNLHRVDPA---TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-  327 (662)
T ss_dssp             SCEEEEECTTSSCEEEEECTT---TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred             CeEEEEECCCCCeEEEEEECC---CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence            99888888888  55556653   233333333322211       123788899999999998 999999  655666 


Q ss_pred             EEEecCCCCCeEEE-EEcCCCceEEeeCCC
Q 037288          456 VFEDKFSNSVPSAV-CWRTQRSMGPQIEGK  484 (513)
Q Consensus       456 ~~~~~~~~~~v~~v-~~~p~~~~~~t~~~~  484 (513)
                      +..+..+...+..+ +++++..++++.+.+
T Consensus       328 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~  357 (662)
T 3azo_A          328 LVDAAGPWTEWAATLTVSGTRAVGVAASPR  357 (662)
T ss_dssp             EEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             EEEecCCCCeEEEEEecCCCEEEEEEcCCC
Confidence            56777777777777 666666666665544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.42  E-value=1.2e-11  Score=133.78  Aligned_cols=239  Identities=6%  Similarity=-0.141  Sum_probs=139.4

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee--eCCCe--
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR--SKSDI--  299 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V--  299 (513)
                      +.+++|++.+...             ..+..|...+...+|||||+.||.+.++.|.+||+.++....+..  +...+  
T Consensus        92 ~~~~~~d~~~~~~-------------~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~  158 (740)
T 4a5s_A           92 ASYDIYDLNKRQL-------------ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYN  158 (740)
T ss_dssp             EEEEEEETTTTEE-------------CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred             eEEEEEECCCCcE-------------EEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceec
Confidence            5566777664322             225567778999999999999999999999999999887654332  22222  


Q ss_pred             ---------------EEEEEecCCcEEEEEeCCC-eEEEEECCCCccccccccccccCcCeEEEeeCC------eEEEeE
Q 037288          300 ---------------LAQQVIHSGNVVLCGFRNG-AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND------RVTNEQ  357 (513)
Q Consensus       300 ---------------~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~------~~~s~~  357 (513)
                                     .++.|+|||+.|+.++.|. .+.+|++......      ..+...+..+.+..      ..-..-
T Consensus       159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~------~~~~~~~~~~~yp~~G~~~~~~~l~v  232 (740)
T 4a5s_A          159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE------SLQYPKTVRVPYPKAGAVNPTVKFFV  232 (740)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST------TCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC------CCCCCcceeecCCCCcCcCCeeEEEE
Confidence                           3589999999888876554 4777776322110      01222333333322      111122


Q ss_pred             eeccc---CcccceeEeec------CCCceEEEEEcCCCCEEEEEec----CCeEEEEecCCCC----ccceEEe--cCC
Q 037288          358 WFELK---ANIWPSHTTFM------PSSISCLQSLQLYDQYFLASSM----DGTVKLYDHRLTT----RGAVQSY--EGH  418 (513)
Q Consensus       358 w~~~~---~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~s~----dg~i~lwd~~~~~----~~~~~~~--~~h  418 (513)
                      |++..   +.......+..      .........|+|+|+.++....    +..|.+||+...+    ...+..+  .+|
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~  312 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence            66665   42111122221      2222333578899997766543    2369999986322    1112222  456


Q ss_pred             CCcee---EEEEEEcCCCCEEE-EEeC-C--CcEEEEeCCCCeEEEEecCCCCCeEEEE-EcCCCceEEeeCC
Q 037288          419 VNSHT---RIQLGVDQSERFVM-SGGE-D--CKLRIWSIRSGELVFEDKFSNSVPSAVC-WRTQRSMGPQIEG  483 (513)
Q Consensus       419 ~~~v~---~~~~~~s~~g~~l~-sg~~-D--g~v~vwd~~~~~~~~~~~~~~~~v~~v~-~~p~~~~~~t~~~  483 (513)
                      ...+.   .....|+|||+.|+ ..+. +  ..|++||+.+++... +......+..+. ++ ++.++.++..
T Consensus       313 ~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~~d-~~~i~f~~~~  383 (740)
T 4a5s_A          313 TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEALT-SDYLYYISNE  383 (740)
T ss_dssp             SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEEEC-SSEEEEEESC
T ss_pred             CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEEEe-CCEEEEEEec
Confidence            55443   12368999999877 6654 3  468889988776654 333344455544 44 4444444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.40  E-value=1.3e-10  Score=112.79  Aligned_cols=219  Identities=9%  Similarity=-0.013  Sum_probs=152.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeCC-------------------------eEEEEECCCCcEEEEeee--CCCeEEEEEecCCc
Q 037288          257 CTVWTADFCTNPSQAVIGTNL-------------------------GAAMVDMETGMASWVCRS--KSDILAQQVIHSGN  309 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~-------------------------~i~vwd~~~~~~~~~~~~--~~~V~~l~~~~~~~  309 (513)
                      ..+.+++++++|+++++...+                         .|.+||..+++.......  -.....++++++|+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            679999999999999887655                         599999999988766552  24689999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCccccccccc---------cccCcCeEEEeeCC----eEEEeE--------eecccCcccce
Q 037288          310 VVLCGFRNGAIVTVDVRKRQRGCSSRAG---------RRHRIPYSRLQRND----RVTNEQ--------WFELKANIWPS  368 (513)
Q Consensus       310 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~---------~~h~~~v~~v~~~~----~~~s~~--------w~~~~~~~~~~  368 (513)
                      ++++...++.|++||.......  +..+         .++......+++++    .+++.+        |+ ..+...  
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~--~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~--  178 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGP--LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV--  178 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCC--SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE--
T ss_pred             EEEEECCCCEEEEEeCCCCeEE--EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE--
Confidence            9988888999999998654211  2222         34555788999986    333332        33 222211  


Q ss_pred             eEeecC-----------CCceEEEEEcCC-CCEEEEEecCCeEEEEecCCCCccceEEec--CCCCceeEEEEEEcC---
Q 037288          369 HTTFMP-----------SSISCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRGAVQSYE--GHVNSHTRIQLGVDQ---  431 (513)
Q Consensus       369 ~~~~~~-----------~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~--~h~~~v~~~~~~~s~---  431 (513)
                      ..+...           ..... ++++++ ++++++...++.|++||..  ....+..+.  .+...+..  ++++|   
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~g-ia~d~~~g~l~v~d~~~~~I~~~~~~--~G~~~~~~~~~~~~~~~~~--~~~~pg~~  253 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHS-LALVPHLDQLCVADRENGRIQCFKTD--TKEFVREIKHASFGRNVFA--ISYIPGFL  253 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEE-EEEETTTTEEEEEETTTTEEEEEETT--TCCEEEEECCTTTTTCEEE--EEEETTEE
T ss_pred             EEeccCCCCCCCCCcccCCCcE-EEEECCCCEEEEEECCCCEEEEEECC--CCcEEEEEeccccCCCcce--eeecCCEE
Confidence            111111           11334 477887 7777777889999999985  345666664  34444444  78888   


Q ss_pred             ---CCCEEEEEeCCCcEEEEeCCCCeEEEEec---CCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          432 ---SERFVMSGGEDCKLRIWSIRSGELVFEDK---FSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       432 ---~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                         +|+..++...+..|++|++.+++.+..+.   .+...+.+++++|++.++++...+-
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence               33333333445689999999999998873   5566789999999998888876553

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.40  E-value=2.1e-10  Score=112.99  Aligned_cols=168  Identities=10%  Similarity=-0.004  Sum_probs=109.2

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe--CCeEEEEECC-CCcEEE--Eee---eCCCeEEEEEecCCcEEEEEeC-CCeEEEEEC
Q 037288          255 FKCTVWTADFCTNPSQAVIGT--NLGAAMVDME-TGMASW--VCR---SKSDILAQQVIHSGNVVLCGFR-NGAIVTVDV  325 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~-~~~~~~--~~~---~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~  325 (513)
                      +...+.+++|+|+|++++++.  ++.|.+||+. +++...  .+.   +...+..++|+|||+.|++++. ++.|.+|++
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            456899999999999887664  4679999998 776532  232   2456899999999998887765 789999987


Q ss_pred             CC--Ccccc---ccccccc----cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEE-EcCCCCEEEEEec
Q 037288          326 RK--RQRGC---SSRAGRR----HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQS-LQLYDQYFLASSM  395 (513)
Q Consensus       326 ~~--~~~~~---~~~~~~~----h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~s~  395 (513)
                      ..  ++...   .+..+..    |..++.                           ....+.. +. ++|+|++|++++.
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~---------------------------~~~~~~~-i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          223 DPATHMPVYTHHSFPLIPPGIPDRDPETG---------------------------KGLYRAD-VCALTFSGKYMFASSR  274 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTS---------------------------SBSEEEE-EEEECTTSSEEEEEEE
T ss_pred             eCCCCcEEEccceEEcCCCCcCCcccccc---------------------------ccccccc-EEEECCCCCEEEEECC
Confidence            63  32110   0111111    110000                           0001223 35 8899998887765


Q ss_pred             CC------eEEEEecCCCCccceE----EecCCCCceeEEEEEEcC---CCCEEEEEeCC-CcEEEEeCCCCe
Q 037288          396 DG------TVKLYDHRLTTRGAVQ----SYEGHVNSHTRIQLGVDQ---SERFVMSGGED-CKLRIWSIRSGE  454 (513)
Q Consensus       396 dg------~i~lwd~~~~~~~~~~----~~~~h~~~v~~~~~~~s~---~g~~l~sg~~D-g~v~vwd~~~~~  454 (513)
                      +.      .|.+|++.  ..+.+.    ....+......  ++|+|   +|++|++++.+ +.|.+|++....
T Consensus       275 ~~~~~~~~~i~v~~~~--~~g~~~~~~~~~~~~~~~~~~--~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          275 ANKFELQGYIAGFKLR--DCGSIEKQLFLSPTPTSGGHS--NAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             ESSTTSCCEEEEEEEC--TTSCEEEEEEEEECSSCCTTC--CCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCCCCCCeEEEEEEC--CCCCEEEeeeeeecCCCCccc--ceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            33      89999995  233222    13333333334  78899   89999999875 899999987763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.1e-11  Score=121.53  Aligned_cols=173  Identities=16%  Similarity=0.168  Sum_probs=128.9

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCc-----------EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGM-----------ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~-----------~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .++.+++++...++++|+.+++++|++...+           ......+.. |+.++|  |+++|+++ .++.|++||++
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            6899999999999999999999999865332           223445666 999999  89999999 88999999998


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      +.....   ....|..++.                                 .+....|+   +++++.||.|.+||+. 
T Consensus       115 sl~~~~---~~~~~~~~v~---------------------------------~i~~~~p~---~av~~~dG~L~v~dl~-  154 (388)
T 1xip_A          115 ELSEFR---TVTSFEKPVF---------------------------------QLKNVNNT---LVILNSVNDLSALDLR-  154 (388)
T ss_dssp             STTCEE---EEEECSSCEE---------------------------------EEEECSSE---EEEEETTSEEEEEETT-
T ss_pred             hhhccC---ccceeeccee---------------------------------eEEecCCC---EEEEECCCCEEEEEcc-
Confidence            765322   3333333333                                 33344432   8889999999999996 


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEe------c---CCCCCeEEEEEcCCC
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL--VFED------K---FSNSVPSAVCWRTQR  475 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~--~~~~------~---~~~~~v~~v~~~p~~  475 (513)
                       ......    +...|++  ++|+|+|  ++.|..||++++|+...++.  ..++      .   .|...|.+++|.+++
T Consensus       155 -~~~~~~----~~~~Vs~--v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          155 -TKSTKQ----LAQNVTS--FDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             -TCCEEE----EEESEEE--EEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             -CCcccc----ccCCceE--EEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence             333322    3345666  9999999  78899999999999988885  5555      2   256789999999998


Q ss_pred             ceEEeeCC
Q 037288          476 SMGPQIEG  483 (513)
Q Consensus       476 ~~~~t~~~  483 (513)
                      .++++-..
T Consensus       226 ~flv~y~~  233 (388)
T 1xip_A          226 DFLAVFGN  233 (388)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEcC
Confidence            87776443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.36  E-value=1e-09  Score=106.34  Aligned_cols=225  Identities=8%  Similarity=0.030  Sum_probs=148.6

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCC----CeEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRN----GAIVT  322 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~d----g~i~i  322 (513)
                      ...+..+...+.+++|+++|++++++. +++|.+||..+++..... .+...+.+++|+++|+++++...+    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            344566667789999999999887775 456999999988866554 355679999999999988887666    68999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCC--eEEEeE------------eecc--cCcccceeEeecCCCceEEEEEcCC
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ------------WFEL--KANIWPSHTTFMPSSISCLQSLQLY  386 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~------------w~~~--~~~~~~~~~~~~~~~v~~~~~~~~~  386 (513)
                      ||........ +..-..+...+..+.+++  .++.+.            |...  .+...  ........... ..++++
T Consensus       117 ~d~~~~~~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~-i~~~~d  192 (333)
T 2dg1_A          117 ATENGDNLQD-IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNISVANG-IALSTD  192 (333)
T ss_dssp             ECTTSCSCEE-EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEESSEEE-EEECTT
T ss_pred             EeCCCCEEEE-EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE--EeecCCCcccc-eEECCC
Confidence            9988765431 111113445788899988  333322            2221  11111  11111122333 478899


Q ss_pred             CCEEEE-EecCCeEEEEecCCCCcc-ceE--------EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          387 DQYFLA-SSMDGTVKLYDHRLTTRG-AVQ--------SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       387 ~~~l~s-~s~dg~i~lwd~~~~~~~-~~~--------~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      ++.|++ .+.++.|.+||+.  ..+ .+.        .+.++ ....  .++++++|+++++...++.|.+||. +++.+
T Consensus       193 g~~l~v~~~~~~~i~~~d~~--~~g~~~~~~~~~~~~~~~~~-~~~~--~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~  266 (333)
T 2dg1_A          193 EKVLWVTETTANRLHRIALE--DDGVTIQPFGATIPYYFTGH-EGPD--SCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI  266 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEEC--TTSSSEEEEEEEEEEECCSS-SEEE--EEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred             CCEEEEEeCCCCeEEEEEec--CCCcCcccccceEEEecCCC-CCCC--ceEECCCCCEEEEEcCCCEEEEECC-CCCEE
Confidence            986654 4567899999985  221 221        12222 2333  3889999998888888899999998 57777


Q ss_pred             EEecCCCC------CeEEEEEcCCC-ceEEeeCC
Q 037288          457 FEDKFSNS------VPSAVCWRTQR-SMGPQIEG  483 (513)
Q Consensus       457 ~~~~~~~~------~v~~v~~~p~~-~~~~t~~~  483 (513)
                      ..+..+..      .+.+++|+|++ .+++++..
T Consensus       267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            77654432      58899999984 66666554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.35  E-value=9.3e-10  Score=104.10  Aligned_cols=214  Identities=13%  Similarity=0.074  Sum_probs=145.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeee-------CCCeEEEEEe-cCCcEEEEEeC-CCeEEEE
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRS-------KSDILAQQVI-HSGNVVLCGFR-NGAIVTV  323 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~-------~~~V~~l~~~-~~~~~l~sg~~-dg~i~iw  323 (513)
                      ++-....++++++++.++++.. ++.|.+||.. ++....+..       ...+.++++. ++++++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            4456789999999999888764 5679999987 555555432       2458899995 67777766643 8999999


Q ss_pred             ECCCCcccccccccc-ccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEeec---CCCceEEEEEcCCCCE
Q 037288          324 DVRKRQRGCSSRAGR-RHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTFM---PSSISCLQSLQLYDQY  389 (513)
Q Consensus       324 d~~~~~~~~~~~~~~-~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~  389 (513)
                      |. +++.   +..+. .+...+..+++++  .++.+.        |+.. +..  ...+..   ...+.. +++++++++
T Consensus       106 d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~--~~~~~~~~~~~~p~~-i~~~~~g~l  177 (286)
T 1q7f_A          106 NQ-YGQF---VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNV--LHKFGCSKHLEFPNG-VVVNDKQEI  177 (286)
T ss_dssp             CT-TSCE---EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--EEEEECTTTCSSEEE-EEECSSSEE
T ss_pred             CC-CCcE---EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCE--EEEeCCCCccCCcEE-EEECCCCCE
Confidence            94 3433   22332 3445678899987  343332        4422 221  122221   123444 478889998


Q ss_pred             EEEEecCCeEEEEecCCCCccceEEecCC--CCceeEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEecCCC--C
Q 037288          390 FLASSMDGTVKLYDHRLTTRGAVQSYEGH--VNSHTRIQLGVDQSERFVMSGGEDC-KLRIWSIRSGELVFEDKFSN--S  464 (513)
Q Consensus       390 l~s~s~dg~i~lwd~~~~~~~~~~~~~~h--~~~v~~~~~~~s~~g~~l~sg~~Dg-~v~vwd~~~~~~~~~~~~~~--~  464 (513)
                      +++...++.|++||..   ...+..+..+  ......  ++++++|+++++...++ .|.+||. +++.+..+..+.  .
T Consensus       178 ~v~~~~~~~i~~~~~~---g~~~~~~~~~g~~~~p~~--i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  251 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE---GQYLRQIGGEGITNYPIG--VGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHA  251 (286)
T ss_dssp             EEEEGGGTEEEEEETT---CCEEEEESCTTTSCSEEE--EEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred             EEEECCCCEEEEEcCC---CCEEEEEccCCccCCCcE--EEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCC
Confidence            8887889999999973   4456666543  234444  88999999888888776 9999995 566666665433  3


Q ss_pred             CeEEEEEcCCCceEEeeC
Q 037288          465 VPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       465 ~v~~v~~~p~~~~~~t~~  482 (513)
                      .+.+++++|++.+++++.
T Consensus       252 ~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             CEEEEEEETTTEEEEEET
T ss_pred             cceeEEECCCCcEEEECC
Confidence            478999999988888864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.35  E-value=4.3e-11  Score=118.56  Aligned_cols=189  Identities=9%  Similarity=0.013  Sum_probs=127.1

Q ss_pred             eEEeccccCcEEE-----EEEcCCCCEEEEEeC-Ce---EEEEECCCCcEEEEeeeCCC-eEEEEEecCCcEEEEEeCCC
Q 037288          249 MHLVASFKCTVWT-----ADFCTNPSQAVIGTN-LG---AAMVDMETGMASWVCRSKSD-ILAQQVIHSGNVVLCGFRNG  318 (513)
Q Consensus       249 ~~~~~~h~~~V~~-----~~~s~~g~~l~s~s~-~~---i~vwd~~~~~~~~~~~~~~~-V~~l~~~~~~~~l~sg~~dg  318 (513)
                      +..+..|...+..     .+|+|||+.|+.+++ ++   |.+||+.+++...+...... +.++.|+|||+.|+.++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            3445566655655     889999999987765 44   88899999987776664443 45788999999999999999


Q ss_pred             eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE-----
Q 037288          319 AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS-----  393 (513)
Q Consensus       319 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-----  393 (513)
                      .|++||+.+++...   .+..+...+....                                ..+++++.+++..     
T Consensus       103 ~l~~~d~~~g~~~~---~~~~~~~~~~~~~--------------------------------~~~~~dg~~l~~~~~~~~  147 (388)
T 3pe7_A          103 NLMRVDLATLEENV---VYQVPAEWVGYGT--------------------------------WVANSDCTKLVGIEIRRE  147 (388)
T ss_dssp             EEEEEETTTCCEEE---EEECCTTEEEEEE--------------------------------EEECTTSSEEEEEEEEGG
T ss_pred             eEEEEECCCCccee---eeechhhcccccc--------------------------------eeECCCCCeeccccccCc
Confidence            99999999876432   1111211111111                                1246777777642     


Q ss_pred             -----------------ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCC------CcEEEEe
Q 037288          394 -----------------SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGED------CKLRIWS  449 (513)
Q Consensus       394 -----------------s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~D------g~v~vwd  449 (513)
                                       ..+..|.+||+.   .+....+..+...+..  +.|+| ||+.|+....+      ..|.++|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~g~~~~l~~~~~~~~~--~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d  222 (388)
T 3pe7_A          148 DWVPLTDWKKFHEFYFTKPCCRLMRVDLK---TGESTVILQENQWLGH--PIYRPYDDSTVAFCHEGPHDLVDARMWLIN  222 (388)
T ss_dssp             GCCCCCSHHHHHHHGGGCCCEEEEEEETT---TCCEEEEEEESSCEEE--EEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred             ccccccccchhhhhhccCCcceEEEEECC---CCceEEeecCCccccc--cEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence                             234679999985   3344455455555544  88999 99998877753      3788888


Q ss_pred             CCCCeEEEEecCCC-CCeEEEEEcCCCce
Q 037288          450 IRSGELVFEDKFSN-SVPSAVCWRTQRSM  477 (513)
Q Consensus       450 ~~~~~~~~~~~~~~-~~v~~v~~~p~~~~  477 (513)
                      +.+++......... ..+..++|+|++..
T Consensus       223 ~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          223 EDGTNMRKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             TTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred             CCCCceEEeeeCCCCcccccceECCCCCE
Confidence            87665433333222 35788999999653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.34  E-value=4.2e-10  Score=121.08  Aligned_cols=220  Identities=7%  Similarity=-0.106  Sum_probs=144.6

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeC-C-----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCe--------
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTN-L-----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGA--------  319 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~-~-----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~--------  319 (513)
                      +|...+..++|||||++||.+.+ +     .|++||+.+++..........+.+++|+|||+.|+.++.++.        
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            35457889999999999986632 2     699999999987654333334778999999999998888766        


Q ss_pred             --------EEEEECCCCcccc-ccccccccCcCeEEEeeCC---eEEEeE------------eeccc------Cccccee
Q 037288          320 --------IVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRND---RVTNEQ------------WFELK------ANIWPSH  369 (513)
Q Consensus       320 --------i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~---~~~s~~------------w~~~~------~~~~~~~  369 (513)
                              |++|++.++.... .+.....|...+..+.|+|   .++..+            |+...      +......
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    9999998775321 0112333566688899999   333332            33333      2111111


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEecC----CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-
Q 037288          370 TTFMPSSISCLQSLQLYDQYFLASSMD----GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-  444 (513)
Q Consensus       370 ~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-  444 (513)
                      ...+...+..  .++++|..|+..+.+    +.|.+||+..........+..|........++|++++.++++...|+. 
T Consensus       282 l~~~~~~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          282 LIDNFEGEYD--YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EECSSSSCEE--EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             eeCCCCcEEE--EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            2222233333  466788887766653    359999986221113455655654212223777777888888888884 


Q ss_pred             -EEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288          445 -LRIWSIRSGELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       445 -v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                       |++|++.+++.+..+..+...+..++++|++
T Consensus       360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~  391 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (710)
T ss_dssp             EEEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEecCCCCceEEEEecCCCC
Confidence             6667877888878877777778889999885

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.31  E-value=5.9e-10  Score=105.11  Aligned_cols=184  Identities=9%  Similarity=0.049  Sum_probs=132.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC--CCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCcccccc
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK--SDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~--~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~  334 (513)
                      .+.++++.|+|++++ +.+++|..||. +++.++.+...  ..+.++.+.++|+++++.+. ++.|..+|. +++...  
T Consensus        38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~--  112 (276)
T 3no2_A           38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS--  112 (276)
T ss_dssp             CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE--
T ss_pred             CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE--
Confidence            456778899999888 55677999999 89998888753  46889999999999999887 788888876 343221  


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEE
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~  414 (513)
                       .+...                     .. .    ...+ .... .+...++|+++++...++.|..||.   +.+.+.+
T Consensus       113 -~~~~~---------------------~~-~----~~~~-~~~~-~v~~~~~G~~lv~~~~~~~v~~~d~---~G~~~w~  160 (276)
T 3no2_A          113 -KTEFE---------------------TG-I----ERPH-AQFR-QINKNKKGNYLVPLFATSEVREIAP---NGQLLNS  160 (276)
T ss_dssp             -EEEEC---------------------CS-C----SSGG-GSCS-CCEECTTSCEEEEETTTTEEEEECT---TSCEEEE
T ss_pred             -EEecc---------------------CC-C----Cccc-cccc-CceECCCCCEEEEecCCCEEEEECC---CCCEEEE
Confidence             11000                     00 0    0000 0000 1245679999999999999999997   4446777


Q ss_pred             ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC------CCeEEEEEcCCCceEEee
Q 037288          415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN------SVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       415 ~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~------~~v~~v~~~p~~~~~~t~  481 (513)
                      +..+... ..  +.+.++|+.+++++.++.|..+|..+|+.+.++....      ..+..++..+++.+++++
T Consensus       161 ~~~~~~~-~~--~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          161 VKLSGTP-FS--SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EECSSCC-CE--EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EECCCCc-cc--eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            7654332 33  5678999999999988899999999999999875432      227889999998887777

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.28  E-value=2e-10  Score=113.89  Aligned_cols=172  Identities=9%  Similarity=-0.062  Sum_probs=111.6

Q ss_pred             EEEcCCCCEEEEE------eCCeEEEEECCCCcEEEEeeeCCCeEEEEEec-CCcEEEEEeCC------CeEEEEECCCC
Q 037288          262 ADFCTNPSQAVIG------TNLGAAMVDMETGMASWVCRSKSDILAQQVIH-SGNVVLCGFRN------GAIVTVDVRKR  328 (513)
Q Consensus       262 ~~~s~~g~~l~s~------s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~d------g~i~iwd~~~~  328 (513)
                      ++|+|+++.++.+      .+..|.+||+.+++...+..+...+..+.|+| ++..|+..+.+      ..|.+||+...
T Consensus       147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence            4578888877643      23358999999998877777778899999999 78766655543      46888888655


Q ss_pred             ccccccccccccC--cCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-----CeEEE
Q 037288          329 QRGCSSRAGRRHR--IPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-----GTVKL  401 (513)
Q Consensus       329 ~~~~~~~~~~~h~--~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-----g~i~l  401 (513)
                      ...    .+..+.  ..+..                                  ..|+|+|++|+.++.+     +.|++
T Consensus       227 ~~~----~l~~~~~~~~~~~----------------------------------~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          227 NVR----KIKEHAEGESCTH----------------------------------EFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             CCE----ESSCCCTTEEEEE----------------------------------EEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             cee----EeeccCCCccccc----------------------------------eEECCCCCEEEEEecCCCCccceEEE
Confidence            421    111111  11222                                  4678899988777654     45999


Q ss_pred             EecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEEEEe----------------CCCcEEEEeCCCCeEEEEecCCCC
Q 037288          402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGG----------------EDCKLRIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~----------------~Dg~v~vwd~~~~~~~~~~~~~~~  464 (513)
                      ||+.  ... ...+..... . .  ..|+| +|++|++++                .++.|++||+.+++... +..+..
T Consensus       269 ~d~~--~g~-~~~l~~~~~-~-~--~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~  340 (396)
T 3c5m_A          269 ANPE--TLE-NEEVMVMPP-C-S--HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHST  340 (396)
T ss_dssp             ECTT--TCC-EEEEEECCS-E-E--EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCC
T ss_pred             EECC--CCC-eEEeeeCCC-C-C--CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCC
Confidence            9986  222 222221111 1 1  67899 999888765                34789999998887533 333332


Q ss_pred             -----------CeEEEEEcCCCceEE
Q 037288          465 -----------VPSAVCWRTQRSMGP  479 (513)
Q Consensus       465 -----------~v~~v~~~p~~~~~~  479 (513)
                                 .+..++|+|++..++
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~  366 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVL  366 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred             ccccccccccCCCCCceEccCCCeEE
Confidence                       256789999965433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.27  E-value=4.7e-10  Score=109.22  Aligned_cols=205  Identities=10%  Similarity=-0.009  Sum_probs=133.5

Q ss_pred             CcEEEEEEcCCCCEEEEEeC----Ce--EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC-------------
Q 037288          257 CTVWTADFCTNPSQAVIGTN----LG--AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN-------------  317 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~----~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d-------------  317 (513)
                      ..+..++|+|||+.|+..++    +.  |.+||+.+++...+..... +.+++|+|||+.|+.++.+             
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            46788999999999887643    23  8888999888777666655 9999999999888777642             


Q ss_pred             --------------CeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE--------------eecccCcccc
Q 037288          318 --------------GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ--------------WFELKANIWP  367 (513)
Q Consensus       318 --------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~--------------w~~~~~~~~~  367 (513)
                                    ..|++||+.+++..   ..+.. . .+..+.|+|  .++++.              |....+..  
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~---~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~--  210 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVI---EEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE--  210 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEE---EEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE--
T ss_pred             ceeecCcccccCccceEEEEECCCCeEE---eeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce--
Confidence                          57999999877641   23333 2 677888888  233332              11111111  


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEecC--------CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSMD--------GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG  439 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~d--------g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg  439 (513)
                       ..+.....+   ..++|+|++|+.++.+        ..|.+|| .   ........+|...+.. .+.|+ ++ +++++
T Consensus       211 -~~l~~~~~~---~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~---~~~~~l~~~~~~~~~~-~~~~s-dg-~~~~~  279 (347)
T 2gop_A          211 -EKMFEKVSF---YAVDSDGERILLYGKPEKKYMSEHNKLYIYD-G---KEVMGILDEVDRGVGQ-AKIKD-GK-VYFTL  279 (347)
T ss_dssp             -EEEEEEESE---EEEEECSSCEEEEECCSSSCCCSSCEEEEEC-S---SCEEESSTTCCSEEEE-EEEET-TE-EEEEE
T ss_pred             -EEeccCcce---eeECCCCCEEEEEEccccCCccccceEEEEC-C---CceEeccccCCcccCC-ccEEc-Cc-EEEEE
Confidence             111111122   2238899998887754        3677777 2   2222223444554432 26788 88 88999


Q ss_pred             eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          440 GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       440 ~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      +.|+.++|| +.+++....+. +...|.+++|+| ..+++.++.
T Consensus       280 ~~~~~~~l~-~~~g~~~~~~~-~~~~v~~~~~s~-~~~~~~~~~  320 (347)
T 2gop_A          280 FEEGSVNLY-IWDGEIKPIAK-GRHWIMGFDVDE-IVVYLKETA  320 (347)
T ss_dssp             EETTEEEEE-EESSSEEEEEC-SSSEEEEEEESS-SEEEEEECS
T ss_pred             ecCCcEEEE-EcCCceEEEec-CCCeEEeeeeeC-cEEEEEcCC
Confidence            999999999 88776644443 467799999999 555554443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.25  E-value=2.7e-10  Score=112.90  Aligned_cols=211  Identities=7%  Similarity=-0.114  Sum_probs=130.9

Q ss_pred             EEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCCeE-EEEEecCCcEEEEEeCCCeEEEEECCCCccccc
Q 037288          259 VWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSDIL-AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS  333 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~V~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  333 (513)
                      +..++|+|||++|+...+.    .|.+||+.+++...+..+...+. .+.|+|||+.|+.++.++.|++||+..++... 
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~-  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV-  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE-
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE-
Confidence            6778999999998876432    58889999888766555444433 47899999999999999999999998776432 


Q ss_pred             cccccccCcCeEE-------------------EeeCC---eEE------------EeEeecccCcccceeEeecCCCceE
Q 037288          334 SRAGRRHRIPYSR-------------------LQRND---RVT------------NEQWFELKANIWPSHTTFMPSSISC  379 (513)
Q Consensus       334 ~~~~~~h~~~v~~-------------------v~~~~---~~~------------s~~w~~~~~~~~~~~~~~~~~~v~~  379 (513)
                        ....+......                   +.|+|   .++            .-.|+...+...  ........+..
T Consensus       117 --~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~~~~~~~~~~~  192 (396)
T 3c5m_A          117 --IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE--VIHQDTAWLGH  192 (396)
T ss_dssp             --EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE--EEEEESSCEEE
T ss_pred             --EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE--eeccCCccccc
Confidence              22222222211                   22333   000            011555444322  12223334444


Q ss_pred             EEEEcC-CCCEEEEEecC------CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 037288          380 LQSLQL-YDQYFLASSMD------GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRI  447 (513)
Q Consensus       380 ~~~~~~-~~~~l~s~s~d------g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~v  447 (513)
                       ..++| ++..|+..+.+      ..|.+||+.   ......+..+........+.|+|+|++|+.++.+     +.|++
T Consensus       193 -~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          193 -PIYRPFDDSTVGFCHEGPHDLVDARMWLVNED---GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             -EEEETTEEEEEEEEECSCSSSCSCCCEEEETT---SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             -ceECCCCCCEEEEEecCCCCCCCceEEEEECC---CCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence             46788 78877766643      358888874   3334444433322223448999999988777554     44999


Q ss_pred             EeCCCCeEEEEecCCCCCeEEEEEcC-CCceEEee
Q 037288          448 WSIRSGELVFEDKFSNSVPSAVCWRT-QRSMGPQI  481 (513)
Q Consensus       448 wd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~~t~  481 (513)
                      ||+.+++........ . .. ++|+| ++.+++..
T Consensus       269 ~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          269 ANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             ECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEE
T ss_pred             EECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEe
Confidence            999988765433222 1 33 89999 87666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.24  E-value=2.4e-10  Score=121.81  Aligned_cols=192  Identities=10%  Similarity=-0.015  Sum_probs=130.5

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEE--e-CCeEEEEEC-CCCcEEEEeeeCCCeE---------EEEEe--cCCcE-EEEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIG--T-NLGAAMVDM-ETGMASWVCRSKSDIL---------AQQVI--HSGNV-VLCG  314 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~--s-~~~i~vwd~-~~~~~~~~~~~~~~V~---------~l~~~--~~~~~-l~sg  314 (513)
                      .+.+|...|..+++++++.+++..  + ++...||.. ..+....+..+...+.         +..|+  |||+. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            367889999999999876666665  2 345888884 4444544444555555         66676  99987 6655


Q ss_pred             eC-CCeEEEEECC--C-Cccccccccccc-----cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC
Q 037288          315 FR-NGAIVTVDVR--K-RQRGCSSRAGRR-----HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL  385 (513)
Q Consensus       315 ~~-dg~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~  385 (513)
                      +. +..|.++++.  . +..    ..+..     |...+..                                  ..|+|
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~----~~l~~~~~~~~~~~~~~----------------------------------~~~sp  139 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVP----RPLTPVSAVGGGLRWAD----------------------------------PVLLP  139 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCC----EECSCCCCSTTCEEEEE----------------------------------EEEET
T ss_pred             ECCCCeEEEEcCCCCCCCCC----EeccCCccCCCCccccC----------------------------------cEECC
Confidence            43 6677777775  2 332    12222     3233333                                  46788


Q ss_pred             CCCEEEEEecC----------CeEEEEecCCCCc-----cceEEec-CCCCceeEEEEEEcCCCCEEEEEeCC-------
Q 037288          386 YDQYFLASSMD----------GTVKLYDHRLTTR-----GAVQSYE-GHVNSHTRIQLGVDQSERFVMSGGED-------  442 (513)
Q Consensus       386 ~~~~l~s~s~d----------g~i~lwd~~~~~~-----~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~D-------  442 (513)
                      +|+.|++++.|          ..|++||+.  ..     +....+. .+...+..  ++|+|||++|+.++.+       
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~SpDG~~la~~~~~~~~~~~~  215 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLD--GSAAADRSAVRELSDDAHRFVTG--PRLSPDGRQAVWLAWDHPRMPWE  215 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETT--STTTTCGGGSEESSCSCSSEECC--CEECTTSSEEEEEEECTTCCTTT
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECC--CCccccCCceeEEEecCCCcccC--ceECCCCCEEEEEECCCCCCCCC
Confidence            99999988877          589999986  21     4445555 55555544  7899999999988755       


Q ss_pred             -CcEEEEeCC-CC---eEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          443 -CKLRIWSIR-SG---ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       443 -g~v~vwd~~-~~---~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       ..|++||+. ++   +.......+...+..++|+|++.++++++.+
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~  262 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRT  262 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTT
T ss_pred             CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCC
Confidence             379999999 57   4444444556779999999997666666554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.19  E-value=9.4e-09  Score=97.94  Aligned_cols=190  Identities=11%  Similarity=0.044  Sum_probs=123.6

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC-----CCeEEEEEecCCcEEEEEeCC---------CeE
Q 037288          255 FKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK-----SDILAQQVIHSGNVVLCGFRN---------GAI  320 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-----~~V~~l~~~~~~~~l~sg~~d---------g~i  320 (513)
                      +...+.+++++++|+++++ .+++|.+||..+++...+....     ..+..++++|+|+++++...+         ...
T Consensus        52 ~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CCCceEEEEECCCCCEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence            3467899999999995554 5778999999988765444321     237889999999976654322         223


Q ss_pred             EEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE-EEecCCeE
Q 037288          321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL-ASSMDGTV  399 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i  399 (513)
                      .+|.+.......   .+..+.                                  ....-.+++|+++.|+ +.+.++.|
T Consensus       131 ~l~~~d~~g~~~---~~~~~~----------------------------------~~pngi~~spdg~~lyv~~~~~~~i  173 (297)
T 3g4e_A          131 ALYSLFPDHHVK---KYFDQV----------------------------------DISNGLDWSLDHKIFYYIDSLSYSV  173 (297)
T ss_dssp             EEEEECTTSCEE---EEEEEE----------------------------------SBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             EEEEEECCCCEE---EEeecc----------------------------------ccccceEEcCCCCEEEEecCCCCcE
Confidence            444443221110   110000                                  0112247788998665 45567899


Q ss_pred             EEEecCCCCcc-----ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc-C
Q 037288          400 KLYDHRLTTRG-----AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR-T  473 (513)
Q Consensus       400 ~lwd~~~~~~~-----~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~-p  473 (513)
                      .+||+......     .+..+..+......  ++++++|++.++...++.|..||..+++.+..+..+...+++++|. |
T Consensus       174 ~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g--~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~  251 (297)
T 3g4e_A          174 DAFDYDLQTGQISNRRSVYKLEKEEQIPDG--MCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK  251 (297)
T ss_dssp             EEEEECTTTCCEEEEEEEEECCGGGCEEEE--EEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG
T ss_pred             EEEeccCCCCcccCcEEEEECCCCCCCCCe--eEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC
Confidence            99997411211     12223323333334  7889999888887778899999999999999888776779999998 7


Q ss_pred             C-CceEEeeCCC
Q 037288          474 Q-RSMGPQIEGK  484 (513)
Q Consensus       474 ~-~~~~~t~~~~  484 (513)
                      + ..+++|+..+
T Consensus       252 d~~~L~vt~~~~  263 (297)
T 3g4e_A          252 NYSEMYVTCARD  263 (297)
T ss_dssp             GGCEEEEEEBCT
T ss_pred             CCCEEEEEcCCc
Confidence            7 5677776654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.18  E-value=3.6e-09  Score=100.00  Aligned_cols=188  Identities=9%  Similarity=0.027  Sum_probs=127.8

Q ss_pred             cccCcEEEEEE-cCCCCEEEEEe--CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          254 SFKCTVWTADF-CTNPSQAVIGT--NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       254 ~h~~~V~~~~~-s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +|...+..+++ .+++.++++..  ++.|.+|| .+++.+..+.  +...+.+++++++|+++++...++.|.+||....
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~  152 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN  152 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC
Confidence            34467889999 57888777763  67799999 5566666554  2346899999999998888888899999997533


Q ss_pred             ccccccccc--cccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEeecC---CCceEEEEEcCCCCEEEEE
Q 037288          329 QRGCSSRAG--RRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTFMP---SSISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       329 ~~~~~~~~~--~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~  393 (513)
                       .   +..+  ..+...+..+++++  .++.+.        |+.. +..  ...+...   ..+.. ++++++|+++++.
T Consensus       153 -~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~--~~~~~~~g~~~~p~~-i~~d~~G~l~v~~  224 (286)
T 1q7f_A          153 -V---LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQY--LRQIGGEGITNYPIG-VGINSNGEILIAD  224 (286)
T ss_dssp             -E---EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCE--EEEESCTTTSCSEEE-EEECTTCCEEEEE
T ss_pred             -E---EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCE--EEEEccCCccCCCcE-EEECCCCCEEEEe
Confidence             2   2222  24455688999988  443332        5542 221  1222222   23444 4788899988888


Q ss_pred             ecCC-eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          394 SMDG-TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       394 s~dg-~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      ..++ .|.+||.   ....+..+..+........++++|+|+++++ +.|+.|++|++....
T Consensus       225 ~~~~~~i~~~~~---~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          225 NHNNFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CSSSCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCCCEEEEEECC---CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            8776 9999996   4446666655543323345889999987666 679999999986543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.15  E-value=1.1e-08  Score=95.50  Aligned_cols=217  Identities=9%  Similarity=-0.047  Sum_probs=134.3

Q ss_pred             cEEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          258 TVWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      ...+++++++|++++ +. .++.|.+||..++....... ....+.+++++++|+++++.. ++.|.+||.......   
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~---  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT---  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE---
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe---
Confidence            678999999999777 53 45669999987654332211 234688999999999666655 899999998765432   


Q ss_pred             cccc-ccCcCeEEEeeCC--eEEEeE------eecccCcccceeEe-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          335 RAGR-RHRIPYSRLQRND--RVTNEQ------WFELKANIWPSHTT-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       335 ~~~~-~h~~~v~~v~~~~--~~~s~~------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                       .+. .....+..+++.+  .++.+.      +....+........ .....+.. +.++++++++++...++.|.+||.
T Consensus       101 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~-i~~~~~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          101 -VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG-VAVDNSGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             -ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC-EEECTTCCEEEEEGGGTEEEEECT
T ss_pred             -eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee-EEEeCCCCEEEEECCCCEEEEEec
Confidence             222 2335678888887  344332      11111211111111 11123334 367888987777777889999998


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .  ..........+......  ++++++|.++++...++.|.+|+..+.........+...+.++++++++.++++...+
T Consensus       179 ~--~~~~~~~~~~~~~~p~~--i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          179 E--SNNQVVLPFTDITAPWG--IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             T--TCCEEECCCSSCCSEEE--EEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             C--CCceEeecccCCCCceE--EEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence            5  22222211222233334  8899999877777778999999987665443322333568999999998777776554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.15  E-value=2.1e-09  Score=115.28  Aligned_cols=216  Identities=6%  Similarity=-0.072  Sum_probs=135.3

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-----C-CeEEEEECCCCcEEEEeeeCCCe--EEEEEecCCcEEEEEeCCCe------
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT-----N-LGAAMVDMETGMASWVCRSKSDI--LAQQVIHSGNVVLCGFRNGA------  319 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s-----~-~~i~vwd~~~~~~~~~~~~~~~V--~~l~~~~~~~~l~sg~~dg~------  319 (513)
                      +|...+..++|||||++||.+.     + ..|++||+.+++.+. ..+-..+  .+++|+|||+.|+.++.|..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            4666899999999999998442     2 359999999988641 1111222  68999999999999988776      


Q ss_pred             -------EEEEECCCCcccc-ccccccccCcCeEEEeeCC---eEEEeEee---------cccCcccceeEeecCCCceE
Q 037288          320 -------IVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRND---RVTNEQWF---------ELKANIWPSHTTFMPSSISC  379 (513)
Q Consensus       320 -------i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~---~~~s~~w~---------~~~~~~~~~~~~~~~~~v~~  379 (513)
                             |++|++.++.... .+.....|...+..+.|+|   .++..+++         ....................
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  276 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE  276 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE
Confidence                   9999998876321 0234445667888999999   44443322         21111111222223334444


Q ss_pred             EEEEcCCCCEEEEEe---cCCeEEEEecCCCCccceEEecCCC--CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CC
Q 037288          380 LQSLQLYDQYFLASS---MDGTVKLYDHRLTTRGAVQSYEGHV--NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR-SG  453 (513)
Q Consensus       380 ~~~~~~~~~~l~s~s---~dg~i~lwd~~~~~~~~~~~~~~h~--~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~-~~  453 (513)
                      .. + +++.+++.+.   .++.|.+||+..........+..|.  ..+..  ++++ ++.++++...|+..+||.+. ++
T Consensus       277 ~~-~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~--~~~~-~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          277 VH-A-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS--VSIV-GGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             EE-E-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE--EEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             EE-e-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE--EEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            43 3 4566444443   2588999998622111134444343  33433  6666 67788889999998888665 46


Q ss_pred             eEEEEecCC-CCCeEEEEEcCCC
Q 037288          454 ELVFEDKFS-NSVPSAVCWRTQR  475 (513)
Q Consensus       454 ~~~~~~~~~-~~~v~~v~~~p~~  475 (513)
                      +.+..+..+ ...+..++++|++
T Consensus       352 ~~~~~l~~~~~~~v~~~~~s~d~  374 (695)
T 2bkl_A          352 KPVRTVQLPGVGAASNLMGLEDL  374 (695)
T ss_dssp             CEEEECCCSSSSEECCCBSCTTC
T ss_pred             CeeEEecCCCCeEEEEeecCCCC
Confidence            666666544 4557778888875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.10  E-value=3e-08  Score=95.96  Aligned_cols=165  Identities=5%  Similarity=0.008  Sum_probs=113.9

Q ss_pred             cccCcEEEEEEcC-CCCEEEEEe--CCeEEEEECCCCcEEEEeeeC-----------CCeEEEEEecC-CcEEEEEeCCC
Q 037288          254 SFKCTVWTADFCT-NPSQAVIGT--NLGAAMVDMETGMASWVCRSK-----------SDILAQQVIHS-GNVVLCGFRNG  318 (513)
Q Consensus       254 ~h~~~V~~~~~s~-~g~~l~s~s--~~~i~vwd~~~~~~~~~~~~~-----------~~V~~l~~~~~-~~~l~sg~~dg  318 (513)
                      ++......++++| ++.++++.+  ++.|++|| .++..+..+...           .....++++|+ ++++++...++
T Consensus       140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~  218 (329)
T 3fvz_A          140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG  218 (329)
T ss_dssp             TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred             cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence            4455789999999 888888874  56799999 456666665421           23789999998 78888888899


Q ss_pred             eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288          319 AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       319 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      .|++||..+++... ......+...+.+++|+|                        .    ..+..+++.+++...+..
T Consensus       219 ~I~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~p------------------------g----~~~~~~g~~~v~~~~~~~  269 (329)
T 3fvz_A          219 RIQCFKTDTKEFVR-EIKHASFGRNVFAISYIP------------------------G----FLFAVNGKPYFGDQEPVQ  269 (329)
T ss_dssp             EEEEEETTTCCEEE-EECCTTTTTCEEEEEEET------------------------T----EEEEEECCCCTTCSCCCC
T ss_pred             EEEEEECCCCcEEE-EEeccccCCCcceeeecC------------------------C----EEEEeCCCEEeccCCCcE
Confidence            99999998665433 111233444555544422                        0    111124555555556679


Q ss_pred             EEEEecCCCCccceEEec---CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          399 VKLYDHRLTTRGAVQSYE---GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       399 i~lwd~~~~~~~~~~~~~---~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                      |++||+.  ....+..+.   ++......  ++++|+|.++++...++.|++|++..
T Consensus       270 v~~~~~~--~g~~~~~~~~~~~~~~~p~~--ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          270 GFVMNFS--SGEIIDVFKPVRKHFDMPHD--IVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEETT--TCCEEEEECCSSSCCSSEEE--EEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEEcC--CCeEEEEEcCCCCccCCeeE--EEECCCCCEEEEECCCCEEEEEeCCc
Confidence            9999986  455666663   45555544  88999998888888899999999753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.10  E-value=7.4e-08  Score=92.03  Aligned_cols=221  Identities=7%  Similarity=0.028  Sum_probs=141.2

Q ss_pred             ccccCcEEEEEEcCCCCEEEE--------EeCCeEEEEECCCCcEEEEee-----eCCCeEEEEEecC-CcEEEEEeCCC
Q 037288          253 ASFKCTVWTADFCTNPSQAVI--------GTNLGAAMVDMETGMASWVCR-----SKSDILAQQVIHS-GNVVLCGFRNG  318 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s--------~s~~~i~vwd~~~~~~~~~~~-----~~~~V~~l~~~~~-~~~l~sg~~dg  318 (513)
                      ...-....+++|+++|.++++        ..+++|.+||..+++......     +...+.+++++++ |+++++.. +.
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence            333346689999999998887        456779999998887654433     3466899999999 76555554 45


Q ss_pred             eEEEEECCCCcccccc-ccc-cc-cCcCeEEEeeCC--eEEEeE---------------------eeccc-CcccceeEe
Q 037288          319 AIVTVDVRKRQRGCSS-RAG-RR-HRIPYSRLQRND--RVTNEQ---------------------WFELK-ANIWPSHTT  371 (513)
Q Consensus       319 ~i~iwd~~~~~~~~~~-~~~-~~-h~~~v~~v~~~~--~~~s~~---------------------w~~~~-~~~~~~~~~  371 (513)
                      .|.+||.. ++... + ... .. ....+.++++.+  .++.+.                     |.... +..  ....
T Consensus        93 ~l~~~d~~-g~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~~  168 (314)
T 1pjx_A           93 GLLVVQTD-GTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM--IQVD  168 (314)
T ss_dssp             EEEEEETT-SCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE--EEEE
T ss_pred             CEEEEeCC-CCEEE-EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE--EEec
Confidence            79999988 54322 1 111 11 224578888887  333222                     11111 111  1111


Q ss_pred             ecCCCceEEEEEc----CCCCEEEEE-ecCCeEEEEecCCCCcc------ceEEecCCC-CceeEEEEEEcCCCCEEEEE
Q 037288          372 FMPSSISCLQSLQ----LYDQYFLAS-SMDGTVKLYDHRLTTRG------AVQSYEGHV-NSHTRIQLGVDQSERFVMSG  439 (513)
Q Consensus       372 ~~~~~v~~~~~~~----~~~~~l~s~-s~dg~i~lwd~~~~~~~------~~~~~~~h~-~~v~~~~~~~s~~g~~l~sg  439 (513)
                      ........ ..++    ++++.|.++ ..++.|.+||+.  ..+      ....+.++. ....  .++++++|+++++.
T Consensus       169 ~~~~~~~~-i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~--~~g~~~~~~~~~~~~~~~~~~p~--~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          169 TAFQFPNG-IAVRHMNDGRPYQLIVAETPTKKLWSYDIK--GPAKIENKKVWGHIPGTHEGGAD--GMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEESSEEE-EEEEECTTSCEEEEEEEETTTTEEEEEEEE--ETTEEEEEEEEEECCCCSSCEEE--EEEEBTTCCEEEEE
T ss_pred             cCCCCcce-EEEecccCCCCCEEEEEECCCCeEEEEECC--CCCccccceEEEECCCCCCCCCC--ceEECCCCCEEEEE
Confidence            11122233 3677    888665554 567899999974  122      222333332 3333  38899999988888


Q ss_pred             eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc-eEEeeCC
Q 037288          440 GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS-MGPQIEG  483 (513)
Q Consensus       440 ~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~~t~~~  483 (513)
                      ..++.|.+||..+++.+..+..+...+.+++++|++. +++++..
T Consensus       244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            8889999999987877776666667799999999975 7776655

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.07  E-value=4.3e-08  Score=94.78  Aligned_cols=205  Identities=6%  Similarity=0.001  Sum_probs=133.5

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCC----
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKS----  297 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~----  297 (513)
                      .+.+.+++..+....            ..+ ........++++++++++++. .++.|.+||..+++....+....    
T Consensus        63 ~~~v~viD~~t~~~~------------~~i-~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~  129 (328)
T 3dsm_A           63 SHVIFAIDINTFKEV------------GRI-TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME  129 (328)
T ss_dssp             GTEEEEEETTTCCEE------------EEE-ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred             CCEEEEEECcccEEE------------EEc-CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence            456777766543322            222 223567899999998666665 46779999999998877666444    


Q ss_pred             --CeEEEEEecCCcEEEEEe-CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          298 --DILAQQVIHSGNVVLCGF-RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       298 --~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                        ....+++ .++.++++.. .++.|.++|+.+.+...   .+                                  ...
T Consensus       130 ~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~---~i----------------------------------~~g  171 (328)
T 3dsm_A          130 SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD---EL----------------------------------TIG  171 (328)
T ss_dssp             TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE---EE----------------------------------ECS
T ss_pred             CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE---EE----------------------------------EcC
Confidence              5667777 3444444443 48999999998876432   11                                  111


Q ss_pred             CCceEEEEEcCCCCEEEEEecC----------CeEEEEecCCCCccceEEecCCC-CceeEEEEEEcCCCCEEEEEeCCC
Q 037288          375 SSISCLQSLQLYDQYFLASSMD----------GTVKLYDHRLTTRGAVQSYEGHV-NSHTRIQLGVDQSERFVMSGGEDC  443 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s~d----------g~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~~~s~~g~~l~sg~~Dg  443 (513)
                      ..... +.++++|++++++..+          +.|.++|..  .......+.... ...  ..++++|+++.|+++..  
T Consensus       172 ~~p~~-i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~--t~~v~~~~~~~~g~~p--~~la~~~d~~~lyv~~~--  244 (328)
T 3dsm_A          172 IQPTS-LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE--TFTVEKQFKFKLGDWP--SEVQLNGTRDTLYWINN--  244 (328)
T ss_dssp             SCBCC-CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT--TTEEEEEEECCTTCCC--EEEEECTTSCEEEEESS--
T ss_pred             CCccc-eEEcCCCCEEEEECCCccCCccccCCceEEEEECC--CCeEEEEEecCCCCCc--eeEEEecCCCEEEEEcc--
Confidence            11112 3567888877776654          789999986  333444554321 123  34899999999988765  


Q ss_pred             cEEEEeCCCCeEEEE--ecCCCCCeEEEEEcC-CCceEEeeCCCe
Q 037288          444 KLRIWSIRSGELVFE--DKFSNSVPSAVCWRT-QRSMGPQIEGKI  485 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~--~~~~~~~v~~v~~~p-~~~~~~t~~~~~  485 (513)
                      .|.+||+.+++....  +......+..++++| ++.++++...++
T Consensus       245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y  289 (328)
T 3dsm_A          245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY  289 (328)
T ss_dssp             SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS
T ss_pred             EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc
Confidence            899999998886422  122245689999999 588888874444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.06  E-value=2.2e-08  Score=96.81  Aligned_cols=190  Identities=9%  Similarity=-0.041  Sum_probs=123.1

Q ss_pred             CcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          257 CTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      .....+.+.. ++++++. .++.|.+||..+++.+..+........+++++++.++++...++.|.+||+.+.+...   
T Consensus        44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~---  119 (328)
T 3dsm_A           44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG---  119 (328)
T ss_dssp             SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE---
T ss_pred             ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE---
Confidence            3456777743 4444444 4567999999999988877766779999999998655554489999999998876432   


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEE
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~  414 (513)
                      .+.....                            .........+ .+ .++..+++.. .++.|.++|+.  ....+.+
T Consensus       120 ~i~~g~~----------------------------~~~~~~p~~i-~~-~~~~lyv~~~~~~~~v~viD~~--t~~~~~~  167 (328)
T 3dsm_A          120 YIECPDM----------------------------DMESGSTEQM-VQ-YGKYVYVNCWSYQNRILKIDTE--TDKVVDE  167 (328)
T ss_dssp             EEECTTC----------------------------CTTTCBCCCE-EE-ETTEEEEEECTTCCEEEEEETT--TTEEEEE
T ss_pred             EEEcCCc----------------------------cccCCCcceE-EE-ECCEEEEEcCCCCCEEEEEECC--CCeEEEE
Confidence            1110000                            0000011222 23 2444444443 48899999996  4445555


Q ss_pred             ecCCCCceeEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCC-CceEEeeC
Q 037288          415 YEGHVNSHTRIQLGVDQSERFVMSGGED----------CKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQ-RSMGPQIE  482 (513)
Q Consensus       415 ~~~h~~~v~~~~~~~s~~g~~l~sg~~D----------g~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~-~~~~~t~~  482 (513)
                      +.....+ ..  +.++|+|++++++..+          +.|.++|..+++....+... ...+..++++|+ ..++++.+
T Consensus       168 i~~g~~p-~~--i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          168 LTIGIQP-TS--LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             EECSSCB-CC--CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             EEcCCCc-cc--eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            5543332 23  6789999877776654          78999999999988776543 346899999997 55666554


Q ss_pred             CCee
Q 037288          483 GKIH  486 (513)
Q Consensus       483 ~~~~  486 (513)
                       .+.
T Consensus       245 -~v~  247 (328)
T 3dsm_A          245 -DIW  247 (328)
T ss_dssp             -SEE
T ss_pred             -EEE
Confidence             443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.04  E-value=2.4e-08  Score=94.00  Aligned_cols=172  Identities=9%  Similarity=0.042  Sum_probs=119.7

Q ss_pred             CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCC--CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC
Q 037288          267 NPSQAVIGT-NLGAAMVDMETGMASWVCRSKS--DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP  343 (513)
Q Consensus       267 ~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~--~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  343 (513)
                      .+++|++++ ++.|.+||.++|+.++.+....  .+.++.+.|+|++++  +.++.|..||. +++...   .+..+.. 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W---~~~~~~~-   76 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELW---NIAAPAG-   76 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEE---EEECCTT-
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEE---EEcCCCC-
Confidence            456777775 5569999999999999888543  689999999999888  35788999998 565432   2221100 


Q ss_pred             eEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCccceEEec------
Q 037288          344 YSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRGAVQSYE------  416 (513)
Q Consensus       344 v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~~~~~~~------  416 (513)
                                                     ..+.+ ..+.++|+++++.+. ++.|..+|.   +.+.+..+.      
T Consensus        77 -------------------------------~~~~~-~~~~~dG~~lv~~~~~~~~v~~vd~---~Gk~l~~~~~~~~~~  121 (276)
T 3no2_A           77 -------------------------------CEMQT-ARILPDGNALVAWCGHPSTILEVNM---KGEVLSKTEFETGIE  121 (276)
T ss_dssp             -------------------------------CEEEE-EEECTTSCEEEEEESTTEEEEEECT---TSCEEEEEEECCSCS
T ss_pred             -------------------------------ccccc-cEECCCCCEEEEecCCCCEEEEEeC---CCCEEEEEeccCCCC
Confidence                                           01112 356689999998887 777777775   344444443      


Q ss_pred             CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          417 GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       417 ~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ++......  +++.++|++|++...++.|..||.. |+.+.++.... .+.++...+++.+++++..+
T Consensus       122 ~~~~~~~~--v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          122 RPHAQFRQ--INKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             SGGGSCSC--CEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTT
T ss_pred             cccccccC--ceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCC
Confidence            11112222  5678999999999999999999988 99999987653 45567778886655554443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.04  E-value=4.9e-08  Score=95.77  Aligned_cols=201  Identities=10%  Similarity=-0.013  Sum_probs=114.5

Q ss_pred             CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe----------CCCeEEEEECCCCccccccccccc---cCc
Q 037288          276 NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF----------RNGAIVTVDVRKRQRGCSSRAGRR---HRI  342 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~---h~~  342 (513)
                      ++.|.+||..+++.+..+.....- .++|+|||++++++.          .++.|.+||+.+.+....+.....   +..
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~  108 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN  108 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence            557999999999887766533334 899999999999886          367899999987765331211111   224


Q ss_pred             CeEEEeeCC---eEEEeE---------eecccCcccceeE-eecCCCceEEEEEcCC-CCEEEEEecCCeEEEEecCCC-
Q 037288          343 PYSRLQRND---RVTNEQ---------WFELKANIWPSHT-TFMPSSISCLQSLQLY-DQYFLASSMDGTVKLYDHRLT-  407 (513)
Q Consensus       343 ~v~~v~~~~---~~~s~~---------w~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~~~-  407 (513)
                      ....++++|   .++++.         |+...++..  .. +..... ..+ .+.|+ ...+++.+.||.+.+|++... 
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~--~~~i~~~~~-~~v-~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV--EDVTAAAGC-WSV-IPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE--EEEGGGTTE-EEE-EECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE--EEEecCCCc-cee-EEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            466788887   344332         555554332  11 111110 001 11122 133344444444444443200 


Q ss_pred             ---------------------------------------------Ccc--ceEEecCC------CCceeE--EEEEEcCC
Q 037288          408 ---------------------------------------------TRG--AVQSYEGH------VNSHTR--IQLGVDQS  432 (513)
Q Consensus       408 ---------------------------------------------~~~--~~~~~~~h------~~~v~~--~~~~~s~~  432 (513)
                                                                   ...  .+..+...      ......  ..++|+|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence                                                         111  11111000      000000  01578999


Q ss_pred             CCEEEEEeC-----------CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          433 ERFVMSGGE-----------DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       433 g~~l~sg~~-----------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      ++.++++..           ++.|.+||+.+++.+..+..+.  +.+++|+|++..+.+++.
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence            888877643           3479999999999999988766  899999999655444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.04  E-value=4e-07  Score=86.01  Aligned_cols=216  Identities=7%  Similarity=-0.009  Sum_probs=141.7

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-e-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-R-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      +..+...+.++++.++|.++++.. ++.|.+||.. +...... . ....+.+++++++|.++++...++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            344556899999999999887765 5679999998 6544332 1 34569999999999988887778999999986 2


Q ss_pred             ccccccccccccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      +. . ...+......+..+.+.+  .++.+.        |+. .+.... .... ....+.. +.+.++++++++...++
T Consensus        88 ~~-~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~-i~~~~~g~l~v~~~~~~  162 (299)
T 2z2n_A           88 II-K-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSF-ITLGSDNALWFTENQNN  162 (299)
T ss_dssp             CE-E-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEE-EEECTTSCEEEEETTTT
T ss_pred             cE-E-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCce-EEEcCCCCEEEEeCCCC
Confidence            21 1 112233455678888887  333322        433 222211 1111 1223444 46778888887777778


Q ss_pred             eEEEEecCCCCccceEEe--cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCC
Q 037288          398 TVKLYDHRLTTRGAVQSY--EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~  474 (513)
                      .|..||..   .. +..+  ..+...+.  .++++++|++.++...++.|.+||. +++.... ...+...+.++++.++
T Consensus       163 ~i~~~~~~---g~-~~~~~~~~~~~~~~--~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          163 AIGRITES---GD-ITEFKIPTPASGPV--GITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             EEEEECTT---CC-EEEEECSSTTCCEE--EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred             EEEEEcCC---Cc-EEEeeCCCCCCcce--eEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence            99999972   22 2222  22333333  4888999997777777889999999 7764432 3334566899999999


Q ss_pred             CceEEee
Q 037288          475 RSMGPQI  481 (513)
Q Consensus       475 ~~~~~t~  481 (513)
                      +.++++.
T Consensus       236 g~l~v~~  242 (299)
T 2z2n_A          236 IDLWFTE  242 (299)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEec
Confidence            7777775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.03  E-value=4.7e-08  Score=105.06  Aligned_cols=160  Identities=9%  Similarity=-0.019  Sum_probs=104.0

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe------CCeEEEEECCC------C--cEEEEeeeCCCeEEEEEecCCcEEEEEeCC---
Q 037288          255 FKCTVWTADFCTNPSQAVIGT------NLGAAMVDMET------G--MASWVCRSKSDILAQQVIHSGNVVLCGFRN---  317 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s------~~~i~vwd~~~------~--~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d---  317 (513)
                      |...+..+.|+|||++|+.++      +..|.+||+.+      +  ....+..+...+.. .|+++|..|+..+.+   
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~  309 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP  309 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence            556688999999999888654      34599999986      5  34444445555554 488888766655543   


Q ss_pred             -CeEEEEECCCCccccccccccccCc--CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288          318 -GAIVTVDVRKRQRGCSSRAGRRHRI--PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       318 -g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                       +.|.+||+.++.... .+.+..|..  .+..                                  ..+++++.++++..
T Consensus       310 ~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~----------------------------------~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          310 NYRLINIDFTDPEESK-WKVLVPEHEKDVLEW----------------------------------VACVRSNFLVLCYL  354 (710)
T ss_dssp             TCEEEEEETTSCCGGG-CEEEECCCSSCEEEE----------------------------------EEEETTTEEEEEEE
T ss_pred             CCEEEEEeCCCCCccc-ceeccCCCCCCeEEE----------------------------------EEEEcCCEEEEEEE
Confidence             469999998764211 123333322  1222                                  24445777888888


Q ss_pred             cCCeEE--EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-e---CCCcEEEEeCCCCe
Q 037288          395 MDGTVK--LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-G---EDCKLRIWSIRSGE  454 (513)
Q Consensus       395 ~dg~i~--lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~---~Dg~v~vwd~~~~~  454 (513)
                      .|+..+  +||+.  ....+..+..+.+.+..  ++++|+++.|+.. +   ..++|++||+.+++
T Consensus       355 ~~g~~~l~~~~~~--~g~~~~~l~~~~~~v~~--~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          355 HDVKNTLQLHDLA--TGALLKIFPLEVGSVVG--YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTEEEEEEEETT--TCCEEEEECCCSSEEEE--EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCEEEEEEEECC--CCCEEEecCCCCceEEE--EecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888654  55653  33356777777655544  7888998766533 2   35789999998876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.03  E-value=4e-08  Score=105.28  Aligned_cols=163  Identities=10%  Similarity=-0.056  Sum_probs=104.4

Q ss_pred             ccccCcEEEEEEcCCCCEEEEE-eCC----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe---CCCeEEEEE
Q 037288          253 ASFKCTVWTADFCTNPSQAVIG-TNL----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF---RNGAIVTVD  324 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~-s~~----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~---~dg~i~iwd  324 (513)
                      ..|...+..+.|+|||++|+.+ .++    .|.+||..++....+..+...+....+ ++|.+++.+.   .++.|.+||
T Consensus       223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEB
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEe
Confidence            3456688999999999988755 344    377777766766666666666666666 5666444443   258999999


Q ss_pred             CCCCcccccccccccc--CcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288          325 VRKRQRGCSSRAGRRH--RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY  402 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw  402 (513)
                      +.++.... ...+..|  ...+..                                  ..++ ++.++++...|+..+||
T Consensus       302 ~~~~~~~~-~~~l~~~~~~~~l~~----------------------------------~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          302 PAKPARAS-WKEIVPEDSSASLLS----------------------------------VSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             TTBCSGGG-CEEEECCCSSCEEEE----------------------------------EEEE-TTEEEEEEEETTEEEEE
T ss_pred             CCCCCccC-CeEEecCCCCCeEEE----------------------------------EEEE-CCEEEEEEEECCEEEEE
Confidence            97764211 1122222  111222                                  2334 67788888999999988


Q ss_pred             ecCCCCccceEEecCC-CCceeEEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCeE
Q 037288          403 DHRLTTRGAVQSYEGH-VNSHTRIQLGVDQSERFVMSGG----EDCKLRIWSIRSGEL  455 (513)
Q Consensus       403 d~~~~~~~~~~~~~~h-~~~v~~~~~~~s~~g~~l~sg~----~Dg~v~vwd~~~~~~  455 (513)
                      .+.. ..+....+..+ ...+..  ++++|+++.|+...    ..++|++||+.+++.
T Consensus       346 ~~~~-~g~~~~~l~~~~~~~v~~--~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          346 VATL-KGKPVRTVQLPGVGAASN--LMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEET-TCCEEEECCCSSSSEECC--CBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEeC-CCCeeEEecCCCCeEEEE--eecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7642 23345556554 444444  67889988776332    357899999988774

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.03  E-value=1.9e-07  Score=90.09  Aligned_cols=185  Identities=9%  Similarity=-0.028  Sum_probs=120.2

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC-----CCeEEEEEecCCcEEEEEeC------CCeEEEEE
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK-----SDILAQQVIHSGNVVLCGFR------NGAIVTVD  324 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-----~~V~~l~~~~~~~~l~sg~~------dg~i~iwd  324 (513)
                      ...+.+++++++|+++++. +++|.+||..+++........     ..+.+++++|+|+++++...      .+.|..+|
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            3578999999999987765 567999999988865443321     24889999999987665532      24555555


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE-ecCCeEEEEe
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS-SMDGTVKLYD  403 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~lwd  403 (513)
                        .++..    .+..+..                                  ...-..++++++.|+.+ +.++.|.+||
T Consensus       168 --~g~~~----~~~~~~~----------------------------------~~~~i~~s~dg~~lyv~~~~~~~I~~~d  207 (326)
T 2ghs_A          168 --KGKVT----KLFADIS----------------------------------IPNSICFSPDGTTGYFVDTKVNRLMRVP  207 (326)
T ss_dssp             --TTEEE----EEEEEES----------------------------------SEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             --CCcEE----EeeCCCc----------------------------------ccCCeEEcCCCCEEEEEECCCCEEEEEE
Confidence              33211    1110000                                  11124678899876554 4578999999


Q ss_pred             cCCCCc-c-----ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc-CC-C
Q 037288          404 HRLTTR-G-----AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR-TQ-R  475 (513)
Q Consensus       404 ~~~~~~-~-----~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~-p~-~  475 (513)
                      +..... .     .+..+........  .++++++|++.++...++.|.+||. +++.+..+..+...+++++|. ++ .
T Consensus       208 ~~~~~Gl~~~~~~~~~~~~~~~~~p~--gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          208 LDARTGLPTGKAEVFIDSTGIKGGMD--GSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  284 (326)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEE--EEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             cccccCCcccCceEEEECCCCCCCCC--eeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence            741011 1     1223332333333  3788999988777767789999998 677777777666679999998 77 4


Q ss_pred             ceEEeeCCC
Q 037288          476 SMGPQIEGK  484 (513)
Q Consensus       476 ~~~~t~~~~  484 (513)
                      .+++++..+
T Consensus       285 ~L~vt~~~~  293 (326)
T 2ghs_A          285 RLLVTSARE  293 (326)
T ss_dssp             EEEEEEBCT
T ss_pred             EEEEEecCC
Confidence            566665544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.00  E-value=2.6e-08  Score=107.60  Aligned_cols=186  Identities=9%  Similarity=-0.063  Sum_probs=119.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeC------CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCe---------
Q 037288          255 FKCTVWTADFCTNPSQAVIGTN------LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGA---------  319 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~------~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~---------  319 (513)
                      |...+..++|||||++||.+++      ..|++||+.+++.+........+..++|+|| +.|+.+..|+.         
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            4457889999999999987643      2499999999987654322223468899999 88888877654         


Q ss_pred             -----EEEEECCCCcccc-ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288          320 -----IVTVDVRKRQRGC-SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       320 -----i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  393 (513)
                           |++|++.++.... .+.....+...                                 +.. ..++|+|++|+..
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~---------------------------------~~~-~~~SpDG~~l~~~  285 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKR---------------------------------GHG-ASVSSDGRWVVIT  285 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTC---------------------------------EEE-EEECTTSCEEEEE
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeE---------------------------------EEE-EEECCCCCEEEEE
Confidence                 8888887654211 00011111111                                 222 4678999999887


Q ss_pred             ecCC-----eEEEEecCCCCcc-c-eEEecCCCCceeEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC--eEEEEec
Q 037288          394 SMDG-----TVKLYDHRLTTRG-A-VQSYEGHVNSHTRIQLGVDQSERFVMSGGED----CKLRIWSIRSG--ELVFEDK  460 (513)
Q Consensus       394 s~dg-----~i~lwd~~~~~~~-~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D----g~v~vwd~~~~--~~~~~~~  460 (513)
                      +.++     .|.+||+.  ... . ...+..+...+..  . ++|+|+.|+..+.+    +.|.+||+.++  +....+.
T Consensus       286 ~~~~~~~~~~l~~~d~~--~~~~~~~~~l~~~~~~~~~--~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~  360 (741)
T 1yr2_A          286 SSEGTDPVNTVHVARVT--NGKIGPVTALIPDLKAQWD--F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP  360 (741)
T ss_dssp             EECTTCSCCEEEEEEEE--TTEECCCEEEECSSSSCEE--E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred             EEccCCCcceEEEEECC--CCCCcccEEecCCCCceEE--E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence            7654     89999986  221 3 5666656554433  2 35889988877753    45999999885  3444445


Q ss_pred             CCCCCeEEEEEcCCCceEEee
Q 037288          461 FSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       461 ~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      .+...+..++|..+ .++++.
T Consensus       361 ~~~~~l~~~~~~~~-~lv~~~  380 (741)
T 1yr2_A          361 ESKDNLESVGIAGN-RLFASY  380 (741)
T ss_dssp             CCSSEEEEEEEEBT-EEEEEE
T ss_pred             CCCCeEEEEEEECC-EEEEEE
Confidence            55556777888844 444443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.99  E-value=9.7e-08  Score=92.66  Aligned_cols=198  Identities=9%  Similarity=0.005  Sum_probs=122.8

Q ss_pred             CcEEEEEEcCCCCEEEEEe----------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC---C--eEE
Q 037288          257 CTVWTADFCTNPSQAVIGT----------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN---G--AIV  321 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s----------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d---g--~i~  321 (513)
                      ..+...++  ||+.++...          +..|.+||+.+++...+    ..+.+++|+|||+.|+.++.+   +  .|.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            35667777  888877542          33488999998876544    568899999999988877654   3  478


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC---eEEEeE----------------------------------eecccCc
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ----------------------------------WFELKAN  364 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~----------------------------------w~~~~~~  364 (513)
                      +||+..++..    .+..+.. +..+.|+|   .++..+                                  |+...+.
T Consensus        89 ~~~~~~g~~~----~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           89 VADLETLSSK----KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEETTTTEEE----EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             EEECCCCceE----EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            8888776532    2333334 89999998   333322                                  3333333


Q ss_pred             ccceeEeecCCCceEEEEEcCCCCEEEEEecCC-------eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288          365 IWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG-------TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM  437 (513)
Q Consensus       365 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~  437 (513)
                      ..  ..+..+ .+.. ..++|+| +++++..++       ...||.+.   .+....+..+ ..+    ..++|+|++|+
T Consensus       164 ~~--~~l~~~-~~~~-~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~-~~~----~~~spdg~~l~  230 (347)
T 2gop_A          164 VI--EEFEKP-RFSS-GIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE---DGKEEKMFEK-VSF----YAVDSDGERIL  230 (347)
T ss_dssp             EE--EEEEEE-TTCE-EEEETTE-EEEEEECCCSSCCSSCCEEEEEEE---TTEEEEEEEE-ESE----EEEEECSSCEE
T ss_pred             EE--eeecCC-Cccc-ccCCCCe-EEEEEecccccccccccccEEEeC---CCceEEeccC-cce----eeECCCCCEEE
Confidence            20  111112 4444 3678999 777776542       44566553   2233344434 332    23389999988


Q ss_pred             EEeCC--------CcEEEEeCCCCeEEEEecCCCCCeEE-EEEcCCCceEEeeC
Q 037288          438 SGGED--------CKLRIWSIRSGELVFEDKFSNSVPSA-VCWRTQRSMGPQIE  482 (513)
Q Consensus       438 sg~~D--------g~v~vwd~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~~t~~  482 (513)
                      .++.+        ..|++||  +++.......+...+.. ++|+ ++ ++++..
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~  280 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLF  280 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEE
T ss_pred             EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEe
Confidence            87754        3688888  66655444555667886 9999 77 554443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.99  E-value=5.6e-07  Score=93.30  Aligned_cols=241  Identities=8%  Similarity=-0.026  Sum_probs=147.7

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECC--CCcEEEEeeeCCC
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDME--TGMASWVCRSKSD  298 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~--~~~~~~~~~~~~~  298 (513)
                      .++.+.+++..+....            ..+. ....+..+.|+|||+++.++++ +.|.+||+.  +++.+..+.....
T Consensus       175 ~~~~V~viD~~t~~v~------------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~  241 (567)
T 1qks_A          175 DAGQIALIDGSTYEIK------------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  241 (567)
T ss_dssp             TTTEEEEEETTTCCEE------------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             CCCeEEEEECCCCeEE------------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence            4677888877644322            1122 2235678999999998887764 569999996  7887777776566


Q ss_pred             eEEEEEe----cCCcEEEEEeC-CCeEEEEECCCCcccccccccc-------ccCc-CeEEEeeCC---eEEEeE-----
Q 037288          299 ILAQQVI----HSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGR-------RHRI-PYSRLQRND---RVTNEQ-----  357 (513)
Q Consensus       299 V~~l~~~----~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~-------~h~~-~v~~v~~~~---~~~s~~-----  357 (513)
                      ...++|+    |||++++++.. +++|.++|..+.+....+....       .|.. .+..+..++   .++...     
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            7899999    69988777765 5999999988876543111110       0212 455555554   222211     


Q ss_pred             ---eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecC-----CCCceeEEEEE
Q 037288          358 ---WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEG-----HVNSHTRIQLG  428 (513)
Q Consensus       358 ---w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~-----h~~~v~~~~~~  428 (513)
                         ++...........+........ ..|++++++|+++. .++.|.++|+.  +...+..+..     |.+.  ...+ 
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~d-~~~~pdgr~~~va~~~sn~V~ViD~~--t~kl~~~i~vgg~~Phpg~--g~~~-  395 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLHD-GGLDGSHRYFITAANARNKLVVIDTK--EGKLVAIEDTGGQTPHPGR--GANF-  395 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEE-EEECTTSCEEEEEEGGGTEEEEEETT--TTEEEEEEECSSSSBCCTT--CEEE-
T ss_pred             EEEEecCCCccceeeeeeccccccC-ceECCCCCEEEEEeCCCCeEEEEECC--CCcEEEEEeccCcCCCCcc--ceee-
Confidence               1111111011111222222223 46899999987766 57899999996  4444444432     3322  2122 


Q ss_pred             EcCCCCEEE-EEe-CCCcEEEEeCCC-------CeEEEEecCCCCCeEEEEEcCCC-ceEEee
Q 037288          429 VDQSERFVM-SGG-EDCKLRIWSIRS-------GELVFEDKFSNSVPSAVCWRTQR-SMGPQI  481 (513)
Q Consensus       429 ~s~~g~~l~-sg~-~Dg~v~vwd~~~-------~~~~~~~~~~~~~v~~v~~~p~~-~~~~t~  481 (513)
                      ++|++..+. ++. .++.|.++|..+       .+.+.++......-..+..+|++ .++++.
T Consensus       396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            578855554 443 468999999988       77888887654433457789994 556555

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.96  E-value=1.7e-06  Score=81.58  Aligned_cols=213  Identities=7%  Similarity=-0.024  Sum_probs=136.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-e-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          255 FKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-R-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      +...+.++++.++|.++++.. ++.|..||.. ++..... . ....+.++++.++|+++++...++.|..||. +++..
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            346789999999999887765 5679999986 4432221 1 3346899999999998888877899999998 44322


Q ss_pred             cccccccccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          332 CSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      .  .....+...+..+.+.+  .++.+.        |+. .+.... .... ....+.. +.++++++++++...++.|.
T Consensus       133 ~--~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~-i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          133 E--YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVG-ITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             E--EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEE-EEECTTSSEEEEETTTTEEE
T ss_pred             E--ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCccee-EEECCCCCEEEEccCCceEE
Confidence            1  12233455678888887  333322        443 332211 1111 1223444 46788888777766788999


Q ss_pred             EEecCCCCccceEEe--cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCce
Q 037288          401 LYDHRLTTRGAVQSY--EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       401 lwd~~~~~~~~~~~~--~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~  477 (513)
                      +||..   .. +..+  ..+...+..  ++++++|+++++...++.|..||. +++.... +..+...+.++++ +++.+
T Consensus       208 ~~~~~---g~-~~~~~~~~~~~~~~~--i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l  279 (299)
T 2z2n_A          208 RITTS---GE-ITEFKIPTPNARPHA--ITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETI  279 (299)
T ss_dssp             EECTT---CC-EEEEECSSTTCCEEE--EEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCE
T ss_pred             EECCC---Cc-EEEEECCCCCCCcee--EEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCE
Confidence            99972   22 2223  223344444  888999997776667889999998 5553322 2334566899999 88766


Q ss_pred             EEeeC
Q 037288          478 GPQIE  482 (513)
Q Consensus       478 ~~t~~  482 (513)
                      +++..
T Consensus       280 ~v~~~  284 (299)
T 2z2n_A          280 WFAME  284 (299)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            66653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.91  E-value=6.3e-07  Score=89.32  Aligned_cols=222  Identities=8%  Similarity=0.002  Sum_probs=140.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC--eEEEEECCCCccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG--AIVTVDVRKRQRGCS  333 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~  333 (513)
                      .....++|+++++++++... +.|++||..++............. ++|+++++.|+++..++  .|.++|.........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            46789999999997777654 569999999887766555433344 99999999999988866  799998865543111


Q ss_pred             cccccc-cCcCeEEEeeCC---eEEEeE-------eecccCcccceeEe-ec-CCCce--EEEEEcC-CCCEEEEEecCC
Q 037288          334 SRAGRR-HRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTT-FM-PSSIS--CLQSLQL-YDQYFLASSMDG  397 (513)
Q Consensus       334 ~~~~~~-h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~-~~-~~~v~--~~~~~~~-~~~~l~s~s~dg  397 (513)
                      +..+.. ....+.+++++|   .++...       |+...+........ .. .....  +-++++| ++.++++-..++
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            111112 345566777776   344332       33333221110000 10 11111  1347778 466666666788


Q ss_pred             eEEEEecCCCCccceEEecCCC---C----------ceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCC-
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHV---N----------SHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFS-  462 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~---~----------~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~-  462 (513)
                      .|+.||..   .. +..+.++.   +          ......++++++|+++++-. .++.|+.|++.+++..... .+ 
T Consensus       290 ~I~~~~~~---g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~-g~~  364 (409)
T 3hrp_A          290 SVYKITPD---GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-GQV  364 (409)
T ss_dssp             EEEEECTT---CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE-ECT
T ss_pred             EEEEEecC---CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe-CCC
Confidence            99999974   22 33443332   0          01123489999999888877 8999999998888754432 22 


Q ss_pred             --------------CCCeEEEEEcCCCceEEeeCCC
Q 037288          463 --------------NSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       463 --------------~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                                    -.....+++++++.++++....
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence                          1358899999998888877654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.90  E-value=4.5e-07  Score=85.98  Aligned_cols=189  Identities=7%  Similarity=-0.042  Sum_probs=123.8

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeee-----CCCeEEEEEecCCcEEEE----Ee------
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRS-----KSDILAQQVIHSGNVVLC----GF------  315 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~-----~~~V~~l~~~~~~~~l~s----g~------  315 (513)
                      +..+...+.+++++++|+++++.. +++|.+||..+++.......     ...+..++++|+|+++++    |+      
T Consensus        64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~  143 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG  143 (296)
T ss_dssp             EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred             EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence            444667899999999999887775 46799999988886554431     234678999999998887    33      


Q ss_pred             -------CCCeEEEEECCCCccccccccccccCcCeEEEeeCC--e-EEEeE-------eecc-cCcc-cceeEee-cCC
Q 037288          316 -------RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--R-VTNEQ-------WFEL-KANI-WPSHTTF-MPS  375 (513)
Q Consensus       316 -------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~-~~s~~-------w~~~-~~~~-~~~~~~~-~~~  375 (513)
                             ..+.|..+|.. ++    +..+..+......++|+|  . +++..       |+.. .+.+ .....+. ...
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~----~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  218 (296)
T 3e5z_A          144 YGGEMELPGRWVFRLAPD-GT----LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG  218 (296)
T ss_dssp             SCCCCCSSSCEEEEECTT-SC----EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred             ccccccCCCcEEEEECCC-CC----EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence                   13466666654 32    334455666778999988  3 33332       5554 3332 1112221 122


Q ss_pred             CceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          376 SISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV-DQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~-s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      .+.. +.++++|+++++.  ++.|.+||.   ....+..+..+.. +..  ++| +|+++.|++++.+ .+.-++..+.+
T Consensus       219 ~p~~-i~~d~~G~l~v~~--~~~v~~~~~---~g~~~~~~~~~~~-~~~--~~f~~~d~~~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          219 KTDG-LRVDAGGLIWASA--GDGVHVLTP---DGDELGRVLTPQT-TSN--LCFGGPEGRTLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             CCCS-EEEBTTSCEEEEE--TTEEEEECT---TSCEEEEEECSSC-CCE--EEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred             CCCe-EEECCCCCEEEEc--CCeEEEECC---CCCEEEEEECCCC-cee--EEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence            2333 4778899876665  889999997   3446777776766 666  677 6899999888876 45556666655


Q ss_pred             E
Q 037288          455 L  455 (513)
Q Consensus       455 ~  455 (513)
                      +
T Consensus       289 ~  289 (296)
T 3e5z_A          289 L  289 (296)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.87  E-value=1.9e-07  Score=87.07  Aligned_cols=189  Identities=7%  Similarity=-0.091  Sum_probs=122.2

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      ..+.+++++++|+++++..++.|.+||..+........ ....+.+++++++|+++++...++.|.+||..+.....   
T Consensus        67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---  143 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---  143 (270)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---
T ss_pred             CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---
Confidence            46788999999997776666679999988665433222 22568999999999988887788999999765543211   


Q ss_pred             cccccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          336 AGRRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      ........+..+++++  .++.+.        |+........ ........+.. +.++++|.++++...++.|.+||..
T Consensus       144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~-i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPFTDITAPWG-IAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCCSSCCSEEE-EEECTTCCEEEEETTTSCEEEECTT
T ss_pred             eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe-ecccCCCCceE-EEECCCCCEEEEECCCCcEEEEcCC
Confidence            1222334567788876  333332        4433222110 00011133444 4778888877777778899999985


Q ss_pred             CCCccceEEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 037288          406 LTTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL  455 (513)
Q Consensus       406 ~~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~  455 (513)
                         ........ .+......  ++++++|+++++...++.|+++++...+.
T Consensus       222 ---~~~~~~~~~~~~~~p~~--i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          222 ---STTSTVLPFTGLNTPLA--VAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             ---CSCCEECCCCSCSCEEE--EEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             ---CCcceeeccCCCCCcee--EEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence               22222222 23233444  88999999888888999999999876543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.86  E-value=2.8e-07  Score=98.63  Aligned_cols=213  Identities=6%  Similarity=-0.077  Sum_probs=128.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-----C-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC---------
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT-----N-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG---------  318 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s-----~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg---------  318 (513)
                      +|...+..++|||||++||.+.     + ..|++||+.+++.+..........+++|+ ||+.|+.++.+.         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            3556788999999999998542     2 23899999999865432222123678899 999888887774         


Q ss_pred             ----eEEEEECCCCcccc-ccccccc-cCcCeEEEeeCC---eE-EEeE----------eecccCcccceeEeecCCCce
Q 037288          319 ----AIVTVDVRKRQRGC-SSRAGRR-HRIPYSRLQRND---RV-TNEQ----------WFELKANIWPSHTTFMPSSIS  378 (513)
Q Consensus       319 ----~i~iwd~~~~~~~~-~~~~~~~-h~~~v~~v~~~~---~~-~s~~----------w~~~~~~~~~~~~~~~~~~v~  378 (513)
                          .|++|++.+..... .+..... |...+..+.|+|   .+ ++..          +++..+...............
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                49999998765422 0223334 555678889998   22 2222          333333211122222222333


Q ss_pred             EEEEEcCCCCEEE-EEecC---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCC
Q 037288          379 CLQSLQLYDQYFL-ASSMD---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIR  451 (513)
Q Consensus       379 ~~~~~~~~~~~l~-s~s~d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~  451 (513)
                      ..  +++++..|+ ....+   +.|..+|+..........+..|...+  +  .|++++++|+....++   .|++|++.
T Consensus       285 ~~--~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          285 SL--VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV--L--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             EE--EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC--E--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             EE--EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE--E--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            32  444555554 44333   67899998632222345666676654  2  7788898887766544   68999988


Q ss_pred             CCeEEEEecC-CCCCeEEEEEcCC
Q 037288          452 SGELVFEDKF-SNSVPSAVCWRTQ  474 (513)
Q Consensus       452 ~~~~~~~~~~-~~~~v~~v~~~p~  474 (513)
                      .+. ...+.. ....+..+.++++
T Consensus       359 g~~-~~~l~~p~~~~~~~~~~~~d  381 (693)
T 3iuj_A          359 GKR-VREVALPGLGSVSGFNGKHD  381 (693)
T ss_dssp             SCE-EEEECCSSSSEEEECCCCTT
T ss_pred             CCe-eEEeecCCCceEEeeecCCC
Confidence            554 344432 3345667777776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.85  E-value=1.1e-06  Score=91.21  Aligned_cols=206  Identities=12%  Similarity=0.063  Sum_probs=130.8

Q ss_pred             CCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC--CCccccccccccccCcC
Q 037288          267 NPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR--KRQRGCSSRAGRRHRIP  343 (513)
Q Consensus       267 ~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~  343 (513)
                      .+.++++. .++.|.++|..+++.+..+.....+..+.|+|||+++++++.|+.|.+||+.  +.+.   +..+.... .
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~---v~~i~~G~-~  241 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---VAEIKIGS-E  241 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---EEEEECCS-E
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---eEEEecCC-C
Confidence            33444455 3566999999999998888877778899999999999999999999999996  4443   23443322 3


Q ss_pred             eEEEeeC----C---eEEEeE--------eecccCcccceeEeec-----------CC-CceEEEEEcCCCCEE-EEEec
Q 037288          344 YSRLQRN----D---RVTNEQ--------WFELKANIWPSHTTFM-----------PS-SISCLQSLQLYDQYF-LASSM  395 (513)
Q Consensus       344 v~~v~~~----~---~~~s~~--------w~~~~~~~~~~~~~~~-----------~~-~v~~~~~~~~~~~~l-~s~s~  395 (513)
                      ...++|+    |   .++.+.        +|..+.+.  ...+..           +. .+..+ ..++++..+ +....
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~--~~~i~~~~~~~~~~~~~p~~rva~i-~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAI-LASHYRPEFIVNVKE  318 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEE-EECSSSSEEEEEETT
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE--EEEEeccccccccccccCCCceEEE-EEcCCCCEEEEEecC
Confidence            4688888    5   444444        44333332  222221           12 34444 445555544 44456


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecC-CCCC--eEEEE-
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKF-SNSV--PSAVC-  470 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~-~~~~--v~~v~-  470 (513)
                      +|.|.++|........+..+.. ....  ..+.|+|+|++++++. .++.|.++|+.+++++..+.. ...+  -.... 
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~-~~~~--~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~  395 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISA-ERFL--HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  395 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEEC-CSSE--EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             CCeEEEEecCCCccceeeeeec-cccc--cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence            7999999986221112333322 1222  2478999999987665 578999999999998877654 2111  11222 


Q ss_pred             EcCC-CceEEeeC
Q 037288          471 WRTQ-RSMGPQIE  482 (513)
Q Consensus       471 ~~p~-~~~~~t~~  482 (513)
                      ++|+ +.+++++.
T Consensus       396 ~~p~~g~v~~t~~  408 (567)
T 1qks_A          396 VHPTFGPVWATSH  408 (567)
T ss_dssp             EETTTEEEEEEEB
T ss_pred             ECCCCCcEEEeCC
Confidence            5776 66677664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.83  E-value=7.5e-07  Score=84.97  Aligned_cols=221  Identities=9%  Similarity=0.020  Sum_probs=132.6

Q ss_pred             eEEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +..+...........|+++|+ +++++. ++.|..|+. ++...........+..++++++|+++++...++.|..||..
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            344555556778899999998 455554 456999998 45544334455668999999999977776667889999975


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE----Eec-------
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA----SSM-------  395 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s----~s~-------  395 (513)
                       ++..    .+..+...                         ..   ...+.. +.++++|+++++    |..       
T Consensus       116 -g~~~----~~~~~~~~-------------------------~~---~~~~~~-i~~d~dG~l~~td~~~g~~~~~~~~~  161 (305)
T 3dr2_A          116 -GQAH----LLVGRYAG-------------------------KR---LNSPND-LIVARDGAIWFTDPPFGLRKPSQGCP  161 (305)
T ss_dssp             -SCEE----EEECEETT-------------------------EE---CSCCCC-EEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred             -CCEE----EEEeccCC-------------------------Cc---cCCCCC-EEECCCCCEEEeCcCCCccccccccc
Confidence             3321    11110000                         00   011122 356778887776    332       


Q ss_pred             ------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeEEE--Ee-c
Q 037288          396 ------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED------CKLRIWSIRSGELVF--ED-K  460 (513)
Q Consensus       396 ------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D------g~v~vwd~~~~~~~~--~~-~  460 (513)
                            .+.|..||..   .+.+..+. .......  ++|+|+++.|+.+..+      +.|++|++..+.+..  .+ .
T Consensus       162 ~~~~~~~~~v~~~d~~---~g~~~~~~-~~~~p~g--l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~  235 (305)
T 3dr2_A          162 ADPELAHHSVYRLPPD---GSPLQRMA-DLDHPNG--LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS  235 (305)
T ss_dssp             CCCSSSCEEEEEECSS---SCCCEEEE-EESSEEE--EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC
T ss_pred             cccccCCCeEEEEcCC---CCcEEEEe-cCCCCcc--eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE
Confidence                  2457777763   22222222 2222233  8899999988777665      789999987654211  11 1


Q ss_pred             CCCCCeEEEEEcCCCceEEeeCCCee---------eeec---------cCCcccceeeeeeccceeeee
Q 037288          461 FSNSVPSAVCWRTQRSMGPQIEGKIH---------EEFD---------LGQRHSWEAWIGTQEGLFRMN  511 (513)
Q Consensus       461 ~~~~~v~~v~~~p~~~~~~t~~~~~~---------~~~~---------~~~~~~~~~~~gs~~g~~~~~  511 (513)
                      .....+..+++.+++.++++....+.         ..+.         |. ......|+++..|++++.
T Consensus       236 ~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~-~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          236 VPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQLLGHIPTPGTASNCTFD-QAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             CSSSCCCSEEECTTSCEEECCSSEEEEECTTSCEEEEEECSSCCCEEEEC-TTSCEEEEEETTEEEEEE
T ss_pred             CCCCCCCeEEECCCCCEEEecCCcEEEECCCCCEEEEEECCCceeEEEEe-CCCCEEEEEcCCeEEEEE
Confidence            12334567888888777777655444         1111         11 223357888888888764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.81  E-value=9.4e-06  Score=76.41  Aligned_cols=215  Identities=7%  Similarity=-0.038  Sum_probs=138.7

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-e-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcc
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-R-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQR  330 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~  330 (513)
                      .....+.++++.++|.++++.. ++.|.+||.. ++..... . ....+.++++.++|++.++...++.|..+|.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            3446789999999999887764 5779999988 6544322 1 23568999999999988877778999999987 432


Q ss_pred             ccccccccccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          331 GCSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                      .  ...+......+..+++.+  .++.+.        ++.. +... ..... ....+.. ..+.++++++++...++.|
T Consensus        95 ~--~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~-i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           95 T--EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAF-ITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             E--EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEE-EEECTTSSEEEEETTTTEE
T ss_pred             E--EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCcee-EEECCCCCEEEEecCCCeE
Confidence            1  112233345678888876  333322        3322 2221 11111 1223444 4677889877766667889


Q ss_pred             EEEecCCCCccceEEec--CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCc
Q 037288          400 KLYDHRLTTRGAVQSYE--GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~--~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~  476 (513)
                      ..+|..   .. +..+.  .+.....  .++++++|++.++...++.|.+|+. +++.... +......+.++++.+++.
T Consensus       170 ~~~~~~---g~-~~~~~~~~~~~~~~--~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          170 GRITNT---GK-LEEYPLPTNAAAPV--GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE  242 (300)
T ss_dssp             EEECTT---CC-EEEEECSSTTCCEE--EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             EEECCC---Cc-EEEeeCCCCCCCcc--eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence            999873   22 22232  2333343  4888999987777777788999998 5554443 333456689999999977


Q ss_pred             eEEeeC
Q 037288          477 MGPQIE  482 (513)
Q Consensus       477 ~~~t~~  482 (513)
                      ++++..
T Consensus       243 l~v~~~  248 (300)
T 2qc5_A          243 IWFTEW  248 (300)
T ss_dssp             EEEEET
T ss_pred             EEEecc
Confidence            777763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.79  E-value=8.9e-08  Score=92.45  Aligned_cols=179  Identities=11%  Similarity=0.006  Sum_probs=114.6

Q ss_pred             cEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          258 TVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      .|.++.|++++..++.. +++.++.|   .+.....+ .+...+.+++|+++|++++++..++.|.+||..+++...   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~---   80 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---   80 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---
T ss_pred             ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE---
Confidence            46677888877766543 45567888   23333333 355568999999999988888899999999998765322   


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC----CeEEEEecCCCCccc
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD----GTVKLYDHRLTTRGA  411 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~lwd~~~~~~~~  411 (513)
                      ....+...+.+                                  +.++++++++++...+    +.|.+||..  ....
T Consensus        81 ~~~~~~~~~~~----------------------------------i~~~~dg~l~v~~~~~~~~~~~i~~~d~~--~~~~  124 (333)
T 2dg1_A           81 PFVSHKANPAA----------------------------------IKIHKDGRLFVCYLGDFKSTGGIFAATEN--GDNL  124 (333)
T ss_dssp             EEECSSSSEEE----------------------------------EEECTTSCEEEEECTTSSSCCEEEEECTT--SCSC
T ss_pred             EeeCCCCCcce----------------------------------EEECCCCcEEEEeCCCCCCCceEEEEeCC--CCEE
Confidence            11112222333                                  3567789888777666    689999985  2222


Q ss_pred             eEEec--CCCCceeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc-eEEee
Q 037288          412 VQSYE--GHVNSHTRIQLGVDQSERFVMSGGE------DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS-MGPQI  481 (513)
Q Consensus       412 ~~~~~--~h~~~v~~~~~~~s~~g~~l~sg~~------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~~t~  481 (513)
                      ...+.  .+...+.  .+.++|+|+++++...      .+.|..+|..+++..... .....+..++|+|++. ++++.
T Consensus       125 ~~~~~~~~~~~~~~--~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~  200 (333)
T 2dg1_A          125 QDIIEDLSTAYCID--DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTE  200 (333)
T ss_dssp             EEEECSSSSCCCEE--EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEE
T ss_pred             EEEEccCccCCccc--ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEe
Confidence            22232  2233343  4889999988777654      356777776665544332 2234578999999964 55554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.79  E-value=1.1e-05  Score=76.07  Aligned_cols=213  Identities=4%  Similarity=-0.108  Sum_probs=136.4

Q ss_pred             ccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          255 FKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      +...+.++++.++|.++++.. ++.|..+|.. ++......  ....+.++++.++|+++++...++.|..+|.. ++..
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            346789999999999877765 5669999988 65433221  23568999999999988887778899999987 4322


Q ss_pred             cccccccccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEeec---CCCceEEEEEcCCCCEEEEEecCCe
Q 037288          332 CSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTFM---PSSISCLQSLQLYDQYFLASSMDGT  398 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~s~s~dg~  398 (513)
                      .  ..+......+..+.+.+  .++.+.        ++. .+...   .+..   ...+.. +.+.++++++++....+.
T Consensus       138 ~--~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~~-i~~d~~g~l~v~~~~~~~  210 (300)
T 2qc5_A          138 E--YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE---EYPLPTNAAAPVG-ITSGNDGALWFVEIMGNK  210 (300)
T ss_dssp             E--EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEECSSTTCCEEE-EEECTTSSEEEEETTTTE
T ss_pred             E--ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE---EeeCCCCCCCcce-EEECCCCCEEEEccCCCE
Confidence            1  12333445678888877  333322        333 22221   1221   123444 467788887777666788


Q ss_pred             EEEEecCCCCccce-EEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCc
Q 037288          399 VKLYDHRLTTRGAV-QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       399 i~lwd~~~~~~~~~-~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~  476 (513)
                      |.+||..   .... ..+..+...+.  .++++++|++.++...++.|..||. +++.... +......+.+++..+++.
T Consensus       211 i~~~~~~---g~~~~~~~~~~~~~~~--~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          211 IGRITTT---GEISEYDIPTPNARPH--AITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGS  284 (300)
T ss_dssp             EEEECTT---CCEEEEECSSTTCCEE--EEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSC
T ss_pred             EEEEcCC---CcEEEEECCCCCCCce--EEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCC
Confidence            9999972   2221 12223333343  4888999987777666799999998 4544322 333345578899998876


Q ss_pred             eEEeeC
Q 037288          477 MGPQIE  482 (513)
Q Consensus       477 ~~~t~~  482 (513)
                      ++++..
T Consensus       285 l~v~~~  290 (300)
T 2qc5_A          285 VWFALK  290 (300)
T ss_dssp             EEEECS
T ss_pred             EEEEcc
Confidence            666654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.78  E-value=1.5e-05  Score=78.28  Aligned_cols=212  Identities=6%  Similarity=-0.160  Sum_probs=124.2

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEECCCCcEEEEeeeC--------CCeEEEEEecCCcEEEEEeC--CCe
Q 037288          261 TADFCTNPSQAVIGT-----------NLGAAMVDMETGMASWVCRSK--------SDILAQQVIHSGNVVLCGFR--NGA  319 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~~~~~--------~~V~~l~~~~~~~~l~sg~~--dg~  319 (513)
                      .++++|||+++.++.           ++.|.+||..+.+.+..+...        .....+.|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            999999999888764           356899999988877665432        23468899999999998874  578


Q ss_pred             EEEEECCCCcccccccc-ccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeE----eecCCCceEEEEEcCC
Q 037288          320 IVTVDVRKRQRGCSSRA-GRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHT----TFMPSSISCLQSLQLY  386 (513)
Q Consensus       320 i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~----~~~~~~v~~~~~~~~~  386 (513)
                      |.++| .+++...   . +.... .+......+ .+++.+       ++. .++......    +.....+.....+.++
T Consensus       150 v~viD-~t~~~~~---~~i~~~~-~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDD---QLLSSPT-CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEe---EEcCCCc-eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 8776533   3 22111 111111111 111111       233 222110000    0011111111233444


Q ss_pred             CCEEEEEecCCeEEEEecCCCCccceEEecCC----------CCceeEEEEEEcCCCCEEEEEeC----------CCcEE
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH----------VNSHTRIQLGVDQSERFVMSGGE----------DCKLR  446 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h----------~~~v~~~~~~~s~~g~~l~sg~~----------Dg~v~  446 (513)
                      +..++..+.++.+.+.|+.......+..+.-.          ....  ..+.++|+++.|+.+..          ++.|.
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~--~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW--QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCce--EeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            44444445778999999852111122233211          1111  22678999998877653          35799


Q ss_pred             EEeCCCCeEEEEecCCCCCeEEEEEcCCCc--eEEee
Q 037288          447 IWSIRSGELVFEDKFSNSVPSAVCWRTQRS--MGPQI  481 (513)
Q Consensus       447 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~~t~  481 (513)
                      +.|+.+++.+..+.. .....+++|+|++.  ++++.
T Consensus       302 VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          302 SVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             EEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence            999999999999865 33588999999965  45544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.76  E-value=2e-06  Score=81.98  Aligned_cols=187  Identities=9%  Similarity=0.025  Sum_probs=121.1

Q ss_pred             ccCcEEEEEEcCC-CCEEEEEeCCeEEEEECCCCcEEEE-eee-----CCCeEEEEEecCCcEEEEEeCC----------
Q 037288          255 FKCTVWTADFCTN-PSQAVIGTNLGAAMVDMETGMASWV-CRS-----KSDILAQQVIHSGNVVLCGFRN----------  317 (513)
Q Consensus       255 h~~~V~~~~~s~~-g~~l~s~s~~~i~vwd~~~~~~~~~-~~~-----~~~V~~l~~~~~~~~l~sg~~d----------  317 (513)
                      +...+.+++++++ |+++++...++|.+||.. ++.... ...     ...+.+++++++|+++++...+          
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence            4567899999999 887777666689999998 776544 321     1347899999999988777655          


Q ss_pred             -----CeEEEEECCCCccccccccccccCcCeEEEeeC----C---eEEEeE--------eecc-cCcccceeEee-cC-
Q 037288          318 -----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN----D---RVTNEQ--------WFEL-KANIWPSHTTF-MP-  374 (513)
Q Consensus       318 -----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~----~---~~~s~~--------w~~~-~~~~~~~~~~~-~~-  374 (513)
                           +.|..||.. ++.    ..+..+......++++    +   .++.+.        |+.. .+.......+. .. 
T Consensus       148 ~~~~~~~l~~~~~~-g~~----~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQM----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             TSSSCEEEEEECTT-SCE----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ccCCCCeEEEECCC-CCE----EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                 567777765 332    2223333455777777    6   233321        5443 22221111111 11 


Q ss_pred             ---CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 037288          375 ---SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM-SGGEDCKLRIWSI  450 (513)
Q Consensus       375 ---~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~-sg~~Dg~v~vwd~  450 (513)
                         ..... +.++++|+++++...++.|.+||..  ....+..+..+...+..  ++|+++|+.|+ +...++.|..|++
T Consensus       223 ~~~~~p~~-i~~d~~G~l~v~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~--i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          223 THEGGADG-MDFDEDNNLLVANWGSSHIEVFGPD--GGQPKMRIRCPFEKPSN--LHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CSSCEEEE-EEEBTTCCEEEEEETTTEEEEECTT--CBSCSEEEECSSSCEEE--EEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCc-eEECCCCCEEEEEcCCCEEEEEcCC--CCcEeEEEeCCCCCcee--EEECCCCCEEEEEeCCCCeEEEEeC
Confidence               22333 4778899988888788999999985  24456666666555555  78899999555 4455688999998


Q ss_pred             CC
Q 037288          451 RS  452 (513)
Q Consensus       451 ~~  452 (513)
                      ..
T Consensus       298 ~~  299 (314)
T 1pjx_A          298 QR  299 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.75  E-value=1.3e-06  Score=84.96  Aligned_cols=215  Identities=9%  Similarity=-0.057  Sum_probs=129.0

Q ss_pred             cccCcEEEEEEcCCCCEEEEEe------CCeEEEEECCCCcEEEEeeeC-------CCeEEEEEecCC-cEEEEEe---C
Q 037288          254 SFKCTVWTADFCTNPSQAVIGT------NLGAAMVDMETGMASWVCRSK-------SDILAQQVIHSG-NVVLCGF---R  316 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s------~~~i~vwd~~~~~~~~~~~~~-------~~V~~l~~~~~~-~~l~sg~---~  316 (513)
                      +|-..+..++++++++++++..      +..|.+||+.+++.+..+...       ..+..+++++++ .++++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            4557899999999998777653      367999999999866655422       246899999865 4445554   6


Q ss_pred             CCeEEEEECCCCccccccccccccCcCeE-EEeeC--C-eEEEeEeecccCcccceeEee-cCCCceEEEEEcCCCCEEE
Q 037288          317 NGAIVTVDVRKRQRGCSSRAGRRHRIPYS-RLQRN--D-RVTNEQWFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       317 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~~--~-~~~s~~w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~  391 (513)
                      ++.|.+||+.+++...   .+.+|..... ...+.  . .+....   ..+      .+. ....+.. ++++++++.|+
T Consensus       144 ~~~i~v~d~~~g~~~r---~~~~~~~~~~~~~~~~~~g~~~~~~~---~~g------~~~~~~~~~~g-ia~s~dg~~ly  210 (343)
T 2qe8_A          144 KAALIRVDLQTGLAAR---VLQGYPGIAPEDIDLVIDGVPVQIGQ---PDG------TVIRPHLGVNG-IVLDAENEWLY  210 (343)
T ss_dssp             GCEEEEEETTTCCEEE---ECTTCTTTSCCSCCCEETTEECBEEC---TTS------CEECCCCCEEE-EEECTTSCEEE
T ss_pred             CCeEEEEECCCCCEEE---EecCCCcccccccceeECCEEEEecc---CCC------ceeceecccce-eEeccCCCEEE
Confidence            8899999998765422   3333211100 00000  0 000000   000      000 0112233 58899999888


Q ss_pred             EEecCC-eEEEEecCCCCc-----c----ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288          392 ASSMDG-TVKLYDHRLTTR-----G----AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       392 s~s~dg-~i~lwd~~~~~~-----~----~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~  461 (513)
                      ++..++ .+..++......     .    .+. ..++......  ++++++|.++++...++.|.+||..+++.......
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdg--ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~  287 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDG--ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD  287 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSC--EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCce--EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC
Confidence            887766 454444320000     0    011 1122222233  78899999999988899999999866765433332


Q ss_pred             -CCCCeEEEEEcCCCceEEeeCCC
Q 037288          462 -SNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       462 -~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       ....+.++++.+++.+++++...
T Consensus       288 ~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          288 EKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             GGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CceecCCeeEECCCCcEEEEeCcc
Confidence             23458999999998777777654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.74  E-value=1.6e-06  Score=82.64  Aligned_cols=187  Identities=9%  Similarity=0.009  Sum_probs=118.0

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeee-----CCCeEEEEEecCCcEEEE----EeC-----
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRS-----KSDILAQQVIHSGNVVLC----GFR-----  316 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~-----~~~V~~l~~~~~~~~l~s----g~~-----  316 (513)
                      +..+...+..++++++|+++++.. +++|.+||.. ++.......     ...+..++++++|++.++    |..     
T Consensus        81 ~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~  159 (305)
T 3dr2_A           81 LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG  159 (305)
T ss_dssp             EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred             EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence            334556789999999999777654 3579999986 654443321     134678999999998886    432     


Q ss_pred             --------CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC
Q 037288          317 --------NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ  388 (513)
Q Consensus       317 --------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  388 (513)
                              .+.|..+|..+++...    +. ...                                 .... .+++++++
T Consensus       160 ~~~~~~~~~~~v~~~d~~~g~~~~----~~-~~~---------------------------------~p~g-l~~spdg~  200 (305)
T 3dr2_A          160 CPADPELAHHSVYRLPPDGSPLQR----MA-DLD---------------------------------HPNG-LAFSPDEQ  200 (305)
T ss_dssp             CCCCCSSSCEEEEEECSSSCCCEE----EE-EES---------------------------------SEEE-EEECTTSS
T ss_pred             cccccccCCCeEEEEcCCCCcEEE----Ee-cCC---------------------------------CCcc-eEEcCCCC
Confidence                    2456667765554221    10 100                                 1112 46788999


Q ss_pred             EEEEEecC------CeEEEEecCCCCcc--ceEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          389 YFLASSMD------GTVKLYDHRLTTRG--AVQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       389 ~l~s~s~d------g~i~lwd~~~~~~~--~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      .|+++...      +.|.+||+.  ...  ....+ .........  ++++++|++. ++..+| |.+|+. +++.+..+
T Consensus       201 ~lyv~~~~~~~~~~~~i~~~~~~--~~~l~~~~~~~~~~~~~pdg--i~~d~~G~lw-v~~~~g-v~~~~~-~g~~~~~~  273 (305)
T 3dr2_A          201 TLYVSQTPEQGHGSVEITAFAWR--DGALHDRRHFASVPDGLPDG--FCVDRGGWLW-SSSGTG-VCVFDS-DGQLLGHI  273 (305)
T ss_dssp             EEEEEECCC---CCCEEEEEEEE--TTEEEEEEEEECCSSSCCCS--EEECTTSCEE-ECCSSE-EEEECT-TSCEEEEE
T ss_pred             EEEEEecCCcCCCCCEEEEEEec--CCCccCCeEEEECCCCCCCe--EEECCCCCEE-EecCCc-EEEECC-CCCEEEEE
Confidence            87777665      789999985  222  11122 111222223  6788999944 444454 999998 67777777


Q ss_pred             cCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288          460 KFSNSVPSAVCWRTQ-RSMGPQIEGKIH  486 (513)
Q Consensus       460 ~~~~~~v~~v~~~p~-~~~~~t~~~~~~  486 (513)
                      .... .+..++|.|+ ..+++++...+.
T Consensus       274 ~~~~-~~~~~~f~~d~~~L~it~~~~l~  300 (305)
T 3dr2_A          274 PTPG-TASNCTFDQAQQRLFITGGPCLW  300 (305)
T ss_dssp             ECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred             ECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence            6555 4889999988 467777766544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.72  E-value=1.3e-07  Score=92.58  Aligned_cols=147  Identities=7%  Similarity=0.003  Sum_probs=100.0

Q ss_pred             CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288          298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI  377 (513)
Q Consensus       298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v  377 (513)
                      .+..+++++...++++|+.++ +.+|++...+...     ......                     ..+.....++. +
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~-----~~~~~~---------------------~~~~~~~~lp~-V   90 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI-----TSDSTP---------------------LTFKWEKEIPD-V   90 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH-----HSSSCC---------------------CCCSEEEECTT-E
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhh-----cccccc---------------------ccceEEeeCCC-e
Confidence            589999999999999999885 5559876443100     000000                     00122334555 6


Q ss_pred             eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      ..+ .|  ++.+|+++ .++.|++||++  +.........|...+..  +.+.+.  .++++..||.|.+||+.+++...
T Consensus        91 ~~l-~f--d~~~L~v~-~~~~l~v~dv~--sl~~~~~~~~~~~~v~~--i~~~~p--~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A           91 IFV-CF--HGDQVLVS-TRNALYSLDLE--ELSEFRTVTSFEKPVFQ--LKNVNN--TLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             EEE-EE--ETTEEEEE-ESSEEEEEESS--STTCEEEEEECSSCEEE--EEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             eEE-EE--CCCEEEEE-cCCcEEEEEch--hhhccCccceeecceee--EEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence            665 45  88999998 88999999997  33344445556666544  444433  38889999999999999888754


Q ss_pred             EecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          458 EDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       458 ~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                          +...|++++|+|++..++..++.+.
T Consensus       161 ----~~~~Vs~v~WSpkG~~vg~~dg~i~  185 (388)
T 1xip_A          161 ----LAQNVTSFDVTNSQLAVLLKDRSFQ  185 (388)
T ss_dssp             ----EEESEEEEEECSSEEEEEETTSCEE
T ss_pred             ----ccCCceEEEEcCCceEEEEcCCcEE
Confidence                2346999999999977766666655

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.72  E-value=4.5e-06  Score=81.43  Aligned_cols=230  Identities=11%  Similarity=-0.024  Sum_probs=133.5

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-----------CCeEEEEECCCCcEEE
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-----------NLGAAMVDMETGMASW  291 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~  291 (513)
                      .+.+.+++..+....            ..+..-..+ . ++++|||+++.++.           ++.|.+||..+++.+.
T Consensus        58 ~~~V~ViD~~t~~v~------------~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~  123 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVI------------GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA  123 (386)
T ss_dssp             SEEEEEEETTTTEEE------------EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             CCEEEEEECCCCeEE------------EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE
Confidence            467777776643332            223222234 4 99999999776553           3569999999999887


Q ss_pred             EeeeC--------CCeEEEEEecCCcEEEEEeC--CCeEEEEECCCCccccccccccc----------------cCcCeE
Q 037288          292 VCRSK--------SDILAQQVIHSGNVVLCGFR--NGAIVTVDVRKRQRGCSSRAGRR----------------HRIPYS  345 (513)
Q Consensus       292 ~~~~~--------~~V~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~----------------h~~~v~  345 (513)
                      .+.-.        .....++|+|||+.++++..  ++.|.++|+.+.+...++. +.+                ..+.+.
T Consensus       124 ~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g~~~~~P~g~~~~~~~~~DG~~~  202 (386)
T 3sjl_D          124 DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTFFMHCRDGSLA  202 (386)
T ss_dssp             EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSCEE
T ss_pred             EEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCCcceeecCCCceeEEECCCCCEE
Confidence            76532        24667999999998888864  6899999999887543121 100                000111


Q ss_pred             EEeeCC--eEEE-----------------------eE--eecccCcc----------cceeEee-----------cCCCc
Q 037288          346 RLQRND--RVTN-----------------------EQ--WFELKANI----------WPSHTTF-----------MPSSI  377 (513)
Q Consensus       346 ~v~~~~--~~~s-----------------------~~--w~~~~~~~----------~~~~~~~-----------~~~~v  377 (513)
                      -++..+  .+..                       |.  |....+.+          .....+.           .+...
T Consensus       203 ~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~  282 (386)
T 3sjl_D          203 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  282 (386)
T ss_dssp             EEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             EEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence            111110  0000                       00  10000000          0000000           01111


Q ss_pred             eEEEEEcCCCCEEEEEec----------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEE-eCCCcE
Q 037288          378 SCLQSLQLYDQYFLASSM----------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSG-GEDCKL  445 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~----------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg-~~Dg~v  445 (513)
                      .. ..++++++.+.+...          .+.|.++|+.  ..+.+..+..-. ..  ..+.+++|++ .|+++ ..++.|
T Consensus       283 q~-~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~--t~kv~~~i~vg~-~~--~~lavs~D~~~~ly~tn~~~~~V  356 (386)
T 3sjl_D          283 QQ-VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK--TGERLAKFEMGH-EI--DSINVSQDEKPLLYALSTGDKTL  356 (386)
T ss_dssp             SC-EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT--TCCEEEEEEEEE-EE--CEEEECSSSSCEEEEEETTTTEE
T ss_pred             ce-eeECCCCCeEEEEeccccccccCCCCCEEEEEECC--CCeEEEEEECCC-Cc--ceEEECCCCCeEEEEEcCCCCeE
Confidence            11 345677777776643          2568899986  455666664221 23  3489999997 66665 458999


Q ss_pred             EEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          446 RIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       446 ~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .++|..+++.+.++.... ..+.+.++++
T Consensus       357 sViD~~t~k~~~~i~~~~-~p~~l~~s~d  384 (386)
T 3sjl_D          357 YIHDAESGEELRSVNQLG-HGPQVITTAD  384 (386)
T ss_dssp             EEEETTTCCEEEEECCCC-SSCCEEEECC
T ss_pred             EEEECCCCcEEEEecCCC-CCceeEECCc
Confidence            999999999999987643 3456666665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.65  E-value=1.7e-06  Score=93.36  Aligned_cols=176  Identities=13%  Similarity=0.022  Sum_probs=109.5

Q ss_pred             EEEEEEcCCCCEEEEEe-CC--------------eEEEEECCCCc--EEEEeee---CCCeEEEEEecCCcEEEEEeCCC
Q 037288          259 VWTADFCTNPSQAVIGT-NL--------------GAAMVDMETGM--ASWVCRS---KSDILAQQVIHSGNVVLCGFRNG  318 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s-~~--------------~i~vwd~~~~~--~~~~~~~---~~~V~~l~~~~~~~~l~sg~~dg  318 (513)
                      +..++|+|| +.|+.++ ++              .|.+|++.++.  ...++..   ...+.++.|+|||+.|+..+.++
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            357899999 8887664 22              28899998775  2233332   22488999999998887776544


Q ss_pred             -----eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288          319 -----AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS  393 (513)
Q Consensus       319 -----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  393 (513)
                           .|++||+.++.... ...+..+...                                 ....  +.+++..|+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~---------------------------------~~~~--~~~dg~~l~~~  333 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGP-VTALIPDLKA---------------------------------QWDF--VDGVGDQLWFV  333 (741)
T ss_dssp             TCSCCEEEEEEEETTEECC-CEEEECSSSS---------------------------------CEEE--EEEETTEEEEE
T ss_pred             CCCcceEEEEECCCCCCcc-cEEecCCCCc---------------------------------eEEE--EeccCCEEEEE
Confidence                 89999997662110 1122222211                                 1111  23678888777


Q ss_pred             ecC----CeEEEEecCCCCccceEE-ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecCC-CCCe
Q 037288          394 SMD----GTVKLYDHRLTTRGAVQS-YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR-SGELVFEDKFS-NSVP  466 (513)
Q Consensus       394 s~d----g~i~lwd~~~~~~~~~~~-~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~-~~~~~~~~~~~-~~~v  466 (513)
                      +.+    +.|.+||+.... ..... +..+...+..  ++++ ++.++++...|+..+||.+. +++.+..+..+ ...+
T Consensus       334 s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~--~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v  409 (741)
T 1yr2_A          334 SGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLES--VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSA  409 (741)
T ss_dssp             ECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEE--EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEE
T ss_pred             ECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEE--EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEE
Confidence            653    459999986211 22233 3434443333  5665 56677888889988777654 46666666543 5568


Q ss_pred             EEEEEcCCC
Q 037288          467 SAVCWRTQR  475 (513)
Q Consensus       467 ~~v~~~p~~  475 (513)
                      ..+.++|++
T Consensus       410 ~~~~~s~d~  418 (741)
T 1yr2_A          410 SGLSGRPGD  418 (741)
T ss_dssp             EEEECCBTC
T ss_pred             EEeecCCCC
Confidence            889999884

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.63  E-value=1.5e-05  Score=75.45  Aligned_cols=188  Identities=9%  Similarity=0.073  Sum_probs=112.7

Q ss_pred             ccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          255 FKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       255 h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      +..-.-+..|++++. ++++.. ++.|..||..++.. ..+.....+.+++++++|+++++.  +..|.+||..+++...
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEE
Confidence            334556888998554 555553 56699999998875 344556779999999999965553  5689999998765322


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---------CeEEEEe
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---------GTVKLYD  403 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---------g~i~lwd  403 (513)
                       +....... +                              ...+.. ..++++|+++++...+         ....+|.
T Consensus        88 -~~~~~~~~-~------------------------------~~~~~d-i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~  134 (297)
T 3g4e_A           88 -LATVDNDK-K------------------------------NNRFND-GKVDPAGRYFAGTMAEETAPAVLERHQGALYS  134 (297)
T ss_dssp             -EEECCTTC-S------------------------------SEEEEE-EEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred             -EEecCCCC-C------------------------------CCCCCC-EEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence             11110000 0                              001122 3567888866654322         2335555


Q ss_pred             cCCCCccceEEecCCCCceeEEEEEEcCCCCEEE-EEeCCCcEEEEeC--CCCeEE-----EEecCCCCCeEEEEEcCCC
Q 037288          404 HRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM-SGGEDCKLRIWSI--RSGELV-----FEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       404 ~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~-sg~~Dg~v~vwd~--~~~~~~-----~~~~~~~~~v~~v~~~p~~  475 (513)
                      +.  ..+.+..+..+......  ++|+|+++.|+ +.+.++.|.+|++  .++.+.     ..+......+..+++.+++
T Consensus       135 ~d--~~g~~~~~~~~~~~png--i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          135 LF--PDHHVKKYFDQVDISNG--LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG  210 (297)
T ss_dssp             EC--TTSCEEEEEEEESBEEE--EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred             EE--CCCCEEEEeeccccccc--eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence            53  22222222222222233  88999998765 5556789999987  456532     2233334567899999997


Q ss_pred             ceEEeeC
Q 037288          476 SMGPQIE  482 (513)
Q Consensus       476 ~~~~t~~  482 (513)
                      .++++..
T Consensus       211 ~lwva~~  217 (297)
T 3g4e_A          211 KLWVACY  217 (297)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEc
Confidence            7666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.61  E-value=1.4e-05  Score=73.72  Aligned_cols=185  Identities=9%  Similarity=-0.058  Sum_probs=118.6

Q ss_pred             EEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCCeEEEEECCCCcccccc
Q 037288          259 VWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      ...++|++++.++++.+   ++.|.++|+.+++.+..+.-........+..++..|+ +.-.++.+.++|..+.+...  
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~--  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK--  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE--
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE--
Confidence            57899999876666554   3569999999999888776433333223333454444 44458999999998876533  


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC-CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP-SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ  413 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~  413 (513)
                       .+                                  ... ....   .++++++.++++..++.|.++|..  ....+.
T Consensus       101 -~i----------------------------------~~g~~~g~---glt~Dg~~l~vs~gs~~l~viD~~--t~~v~~  140 (266)
T 2iwa_A          101 -NF----------------------------------THQMKDGW---GLATDGKILYGSDGTSILYEIDPH--TFKLIK  140 (266)
T ss_dssp             -EE----------------------------------ECCSSSCC---EEEECSSSEEEECSSSEEEEECTT--TCCEEE
T ss_pred             -EE----------------------------------ECCCCCeE---EEEECCCEEEEECCCCeEEEEECC--CCcEEE
Confidence             11                                  111 0011   234577777777778999999986  444455


Q ss_pred             EecCCC--Ccee-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-------------CCCeEEEEEcCC-Cc
Q 037288          414 SYEGHV--NSHT-RIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-------------NSVPSAVCWRTQ-RS  476 (513)
Q Consensus       414 ~~~~h~--~~v~-~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-------------~~~v~~v~~~p~-~~  476 (513)
                      .+.-..  .++. .-.+.+. +|...+....++.|.+-|..+++.+..+...             ....+.++|+|+ ..
T Consensus       141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~  219 (266)
T 2iwa_A          141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR  219 (266)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred             EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence            544211  1111 1125555 6654444446789999999999999887542             135689999999 57


Q ss_pred             eEEeeCCCee
Q 037288          477 MGPQIEGKIH  486 (513)
Q Consensus       477 ~~~t~~~~~~  486 (513)
                      +|+|....-.
T Consensus       220 lfVTgk~~~~  229 (266)
T 2iwa_A          220 IFVTGKLWPK  229 (266)
T ss_dssp             EEEEETTCSE
T ss_pred             EEEECCCCCe
Confidence            8888765544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.59  E-value=5.3e-08  Score=95.83  Aligned_cols=193  Identities=12%  Similarity=0.099  Sum_probs=102.2

Q ss_pred             CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccccc-----
Q 037288          267 NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH-----  340 (513)
Q Consensus       267 ~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h-----  340 (513)
                      ++..+++++ ++.|..||..+|+.++.+.. ..+.+..+..++.++++++.||.|+.||..+++...   .+..+     
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w---~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT---KLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSE---ECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee---eeeccCcccc
Confidence            455666554 56799999999999998876 666666666778888888899999999998776532   11111     


Q ss_pred             -CcCeEEEeeCCeEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce
Q 037288          341 -RIPYSRLQRNDRVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       341 -~~~v~~v~~~~~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~  412 (513)
                       ..++..  ....++.++       ||..+++..-...  ....    ..++|++..+++++.|+.|+.||.+  ....+
T Consensus        84 ~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~--~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~--tG~~~  153 (369)
T 2hz6_A           84 QASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLS--SAFA----DSLSPSTSLLYLGRTEYTITMYDTK--TRELR  153 (369)
T ss_dssp             TTCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSS--SSSCC
T ss_pred             ccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEec--CCCc----ccccccCCEEEEEecCCEEEEEECC--CCCEE
Confidence             111110  011222222       6666555432111  1111    1334578889999999999999997  33343


Q ss_pred             EEecCCCCceeEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          413 QSYEGHVNSHTRIQLGVDQSE---RFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       413 ~~~~~h~~~v~~~~~~~s~~g---~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      ..+..+.  ...  ..++.+.   ..+++++.||.|+.||..+|+.+.........+...++++++.+
T Consensus       154 W~~~~~~--~~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          154 WNATYFD--YAA--SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             CEEEEEE--ECC--BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             EeEeccc--ccC--ccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            3332111  111  2233322   56778899999999999999998887654433444556666654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.58  E-value=1.9e-05  Score=72.05  Aligned_cols=185  Identities=11%  Similarity=0.037  Sum_probs=118.7

Q ss_pred             cccCc--EEEEEEcCCCCEEEEEe-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEECCC
Q 037288          254 SFKCT--VWTADFCTNPSQAVIGT-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVRK  327 (513)
Q Consensus       254 ~h~~~--V~~~~~s~~g~~l~s~s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~  327 (513)
                      .|...  ...+.|+ ++.++.+.+ ++  .|+++|+.+++.+....-..........+++..|+... .++.+.+||..+
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            55544  4788888 666555554 33  59999999999888877666665544445565555554 589999999998


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .+...   ++.                                  ......   .+.++++.|+.+..++.|.++|..  
T Consensus       117 ~~~~~---ti~----------------------------------~~~eG~---glt~dg~~L~~SdGs~~i~~iDp~--  154 (262)
T 3nol_A          117 LRQVR---SFN----------------------------------YDGEGW---GLTHNDQYLIMSDGTPVLRFLDPE--  154 (262)
T ss_dssp             CCEEE---EEE----------------------------------CSSCCC---CEEECSSCEEECCSSSEEEEECTT--
T ss_pred             CcEEE---EEE----------------------------------CCCCce---EEecCCCEEEEECCCCeEEEEcCC--
Confidence            87533   111                                  111101   122466767766668889999986  


Q ss_pred             CccceEEecCC--CCceeEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC------------CCCeEEEEEc
Q 037288          408 TRGAVQSYEGH--VNSHTRI-QLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS------------NSVPSAVCWR  472 (513)
Q Consensus       408 ~~~~~~~~~~h--~~~v~~~-~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~------------~~~v~~v~~~  472 (513)
                      ....+.++...  ..++..+ .+.+. +|+..+..-.+..|.+.|..+++.+..+...            ....+.+||+
T Consensus       155 T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~d  233 (262)
T 3nol_A          155 SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWD  233 (262)
T ss_dssp             TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEE
T ss_pred             CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEc
Confidence            34455554322  1121111 14444 6654444446889999999999999887542            2457999999


Q ss_pred             CC-CceEEeeC
Q 037288          473 TQ-RSMGPQIE  482 (513)
Q Consensus       473 p~-~~~~~t~~  482 (513)
                      |+ ..+|+|+.
T Consensus       234 p~~~~lfVTGK  244 (262)
T 3nol_A          234 KEHHRLFVTGK  244 (262)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCEEEEECC
Confidence            98 66777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.53  E-value=6.4e-05  Score=72.20  Aligned_cols=181  Identities=7%  Similarity=-0.033  Sum_probs=108.6

Q ss_pred             cEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          258 TVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       258 ~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      ...+..|++++. ++++.. +++|..||..+++.. .+.....+.+++|+++|+++++. .+ .|.+||..+++... +.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~-~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL-HA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE-EE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE-Ee
Confidence            456788999755 555553 466999999887643 33455679999999999877754 44 49999987765322 11


Q ss_pred             cccc-c-CcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC----CeEEEEecCCCCc
Q 037288          336 AGRR-H-RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD----GTVKLYDHRLTTR  409 (513)
Q Consensus       336 ~~~~-h-~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~lwd~~~~~~  409 (513)
                      .... . ...+                                 .. ..++++|+++++...+    +...||.+.  . 
T Consensus       126 ~~~~~~~~~~~---------------------------------~~-i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-  168 (326)
T 2ghs_A          126 ELESDLPGNRS---------------------------------ND-GRMHPSGALWIGTMGRKAETGAGSIYHVA--K-  168 (326)
T ss_dssp             CSSTTCTTEEE---------------------------------EE-EEECTTSCEEEEEEETTCCTTCEEEEEEE--T-
T ss_pred             eCCCCCCCCCC---------------------------------CC-EEECCCCCEEEEeCCCcCCCCceEEEEEe--C-
Confidence            1100 0 0111                                 12 3567788876654422    223444432  1 


Q ss_pred             cceEEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-e-----EEEEecCCCCCeEEEEEcCCCceEEe
Q 037288          410 GAVQSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIR--SG-E-----LVFEDKFSNSVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~--~~-~-----~~~~~~~~~~~v~~v~~~p~~~~~~t  480 (513)
                      +.+..+..+.....  .++|+|+|+.|+.+ ..++.|.+|++.  ++ +     .+..+......+..+++.+++.++++
T Consensus       169 g~~~~~~~~~~~~~--~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva  246 (326)
T 2ghs_A          169 GKVTKLFADISIPN--SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  246 (326)
T ss_dssp             TEEEEEEEEESSEE--EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             CcEEEeeCCCcccC--CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence            22222222222223  38899999877554 557899999986  56 3     23333333455788999998766665


Q ss_pred             e
Q 037288          481 I  481 (513)
Q Consensus       481 ~  481 (513)
                      .
T Consensus       247 ~  247 (326)
T 2ghs_A          247 R  247 (326)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.46  E-value=2e-05  Score=78.18  Aligned_cols=236  Identities=6%  Similarity=-0.092  Sum_probs=136.6

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-----------CCeEEEEECCCCcEEEE
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-----------NLGAAMVDMETGMASWV  292 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~  292 (513)
                      +.+.++++.+....            ..+..-..+  .++++|||+.+.++.           ++.|.++|..+++.+..
T Consensus        99 ~~VsVID~~t~~vv------------~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~  164 (426)
T 3c75_H           99 TQQFVIDGSTGRIL------------GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD  164 (426)
T ss_dssp             EEEEEEETTTTEEE------------EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             CeEEEEECCCCEEE------------EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence            67777777654332            222222234  899999999776553           45699999999998777


Q ss_pred             eeeC--------CCeEEEEEecCCcEEEEEeC--CCeEEEEECCCCccccccccccccCcCeEEEeeC-CeEEEeE----
Q 037288          293 CRSK--------SDILAQQVIHSGNVVLCGFR--NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN-DRVTNEQ----  357 (513)
Q Consensus       293 ~~~~--------~~V~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~s~~----  357 (513)
                      +.-.        .....+.|+|||++++++..  ++.|.+.|+.+.+...   .+.-... +.-.... ..+++.+    
T Consensus       165 I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~---~I~v~g~-~~~~p~g~~~~v~~~~dG~  240 (426)
T 3c75_H          165 IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR---MLDVPDC-YHIFPASPTVFYMNCRDGS  240 (426)
T ss_dssp             EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE---EEECCSE-EEEEEEETTEEEEEETTSS
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE---EEEcCCc-eeeccCCCcEEEEEcCCCC
Confidence            6532        23567899999999998874  5899999999887543   2221110 0000000 0111111    


Q ss_pred             ---eecccCcccceeEeec-----CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC---C-------C
Q 037288          358 ---WFELKANIWPSHTTFM-----PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG---H-------V  419 (513)
Q Consensus       358 ---w~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~---h-------~  419 (513)
                         .+...++.  ......     ...+.....+.+++..++..+..+.|.+.|+.......+.++.-   .       .
T Consensus       241 ~~~V~~~~~~v--~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          241 LARVDFADGET--KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             EEEEECCTTCC--EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             EEEEECCCCcE--EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence               00101110  000000     00000112356777777777788999999985211001111110   0       0


Q ss_pred             CceeEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc--eEEeeC
Q 037288          420 NSHTRIQLGVDQSERFVMSGGE----------DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS--MGPQIE  482 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~sg~~----------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~~t~~  482 (513)
                      .....  ++++|+++.++....          ++.|.+.|+.+.+.+..+... ....+++|+|++.  ++++..
T Consensus       319 ~g~~~--va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~  390 (426)
T 3c75_H          319 GGWQQ--TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSA  390 (426)
T ss_dssp             CSSSC--EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEET
T ss_pred             CCcee--eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcC
Confidence            01111  578999887776642          357999999999999998653 3478999999954  666653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.43  E-value=0.00013  Score=65.95  Aligned_cols=185  Identities=12%  Similarity=0.017  Sum_probs=117.1

Q ss_pred             cccC--cEEEEEEcCCCCEEEEEeC---CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCCeEEEEECCC
Q 037288          254 SFKC--TVWTADFCTNPSQAVIGTN---LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNGAIVTVDVRK  327 (513)
Q Consensus       254 ~h~~--~V~~~~~s~~g~~l~s~s~---~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg~i~iwd~~~  327 (513)
                      .|..  -...+.|+. +.++.+.+.   ..|+.+|+.+++.+....-...........+++.|+ ..-.++.+.+||..+
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            5654  356889986 555555443   369999999999988887665555444444454444 445689999999998


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      .+...   ++                                  ........   +.+++..|+++..++.|.++|..  
T Consensus        95 l~~~~---ti----------------------------------~~~~~Gwg---lt~dg~~L~vSdgs~~l~~iDp~--  132 (243)
T 3mbr_X           95 LTPRA---RF----------------------------------RYPGEGWA---LTSDDSHLYMSDGTAVIRKLDPD--  132 (243)
T ss_dssp             TEEEE---EE----------------------------------ECSSCCCE---EEECSSCEEEECSSSEEEEECTT--
T ss_pred             CcEEE---EE----------------------------------eCCCCceE---EeeCCCEEEEECCCCeEEEEeCC--
Confidence            87533   21                                  11111111   22466767777778999999986  


Q ss_pred             CccceEEecC--CCCceeEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-------------CCCeEEEEE
Q 037288          408 TRGAVQSYEG--HVNSHTRI-QLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-------------NSVPSAVCW  471 (513)
Q Consensus       408 ~~~~~~~~~~--h~~~v~~~-~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-------------~~~v~~v~~  471 (513)
                      ....+.++.-  +..++..+ .+.+. +|+..+..-.+..|.+.|..+++.+..+...             ....+++||
T Consensus       133 t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~  211 (243)
T 3mbr_X          133 TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF  211 (243)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred             CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE
Confidence            4445555542  21121111 13333 5654444446789999999999999886422             246799999


Q ss_pred             cCC-CceEEeeC
Q 037288          472 RTQ-RSMGPQIE  482 (513)
Q Consensus       472 ~p~-~~~~~t~~  482 (513)
                      +|+ ..+|+|+-
T Consensus       212 d~~~~~lfVTGK  223 (243)
T 3mbr_X          212 DAEHDRLFVTGK  223 (243)
T ss_dssp             ETTTTEEEEEET
T ss_pred             cCCCCEEEEECC
Confidence            998 66777654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.42  E-value=4.1e-05  Score=76.10  Aligned_cols=166  Identities=7%  Similarity=0.028  Sum_probs=101.0

Q ss_pred             ccCcEEEEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEE----eeeC-CCe-E-EEEEecC-CcEEEEEeCCCeEEEEEC
Q 037288          255 FKCTVWTADFCT-NPSQAVIGTNLGAAMVDMETGMASWV----CRSK-SDI-L-AQQVIHS-GNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       255 h~~~V~~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~----~~~~-~~V-~-~l~~~~~-~~~l~sg~~dg~i~iwd~  325 (513)
                      +...+.+++++| ++.++++..++.|..||..++.....    .... ..- . .++|+|+ +.++++-..++.|+.||.
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            345678899999 56655543455699999988764433    1111 112 3 9999995 677777777899999987


Q ss_pred             CCCccccccccccccC---cCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEE
Q 037288          326 RKRQRGCSSRAGRRHR---IPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKL  401 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~l  401 (513)
                      .....     .+.++.   +.....                 . ....+   ..... ++++++|+++++-. .++.|+.
T Consensus       297 ~g~~~-----~~~g~~~~~g~~dg~-----------------~-~~~~~---~~P~g-ia~d~dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          297 DGECE-----WFCGSATQKTVQDGL-----------------R-EEALF---AQPNG-MTVDEDGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             TCCEE-----EEEECTTCCSCBCEE-----------------G-GGCBC---SSEEE-EEECTTCCEEEEETTTTCEEEE
T ss_pred             CCCEE-----EEEeCCCCCCcCCCc-----------------c-cccEe---CCCeE-EEEeCCCCEEEEeCCCCCEEEE
Confidence            64311     111111   000000                 0 00000   11222 47788999777777 7899999


Q ss_pred             EecCCCCccceEEecCCCC-------------ceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          402 YDHRLTTRGAVQSYEGHVN-------------SHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       402 wd~~~~~~~~~~~~~~h~~-------------~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      ||+.   .+.+.++.++..             ......++++++|.++++-..++.|+.+++
T Consensus       350 ~~~~---~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          350 LDIL---DGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EETT---TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EECC---CCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            9973   344555554410             111244889999888888888888888765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.42  E-value=6.9e-05  Score=72.98  Aligned_cols=205  Identities=8%  Similarity=-0.120  Sum_probs=119.4

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEECCCCcEEEEeeeC--------CCeEEEEEecCCcEEEEEeC--CCe
Q 037288          261 TADFCTNPSQAVIGT-----------NLGAAMVDMETGMASWVCRSK--------SDILAQQVIHSGNVVLCGFR--NGA  319 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~~~~~--------~~V~~l~~~~~~~~l~sg~~--dg~  319 (513)
                      .+.++||++++.++.           ++.|.+||+.+++.+..+...        .....++|+|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999887664           356999999999988887643        34678999999999888865  467


Q ss_pred             EEE--EECCCCccccccc----ccccc---------CcCeEEEeeCC-----------------------------e-EE
Q 037288          320 IVT--VDVRKRQRGCSSR----AGRRH---------RIPYSRLQRND-----------------------------R-VT  354 (513)
Q Consensus       320 i~i--wd~~~~~~~~~~~----~~~~h---------~~~v~~v~~~~-----------------------------~-~~  354 (513)
                      |.+  +|+.+-+.+. +.    ....+         .+.+..++...                             . ++
T Consensus       149 v~V~~iD~~tv~~i~-v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~  227 (368)
T 1mda_H          149 AGLSVPGASDDQLTK-SASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             EEEEETTTEEEEEEE-CSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             EEEEEEchhhceEEE-CCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEE
Confidence            888  8886511110 00    00000         00111111100                             0 00


Q ss_pred             Ee--E---eecccCcccceeEee-----------cCCCceEEEEEcCCCCEEEEEec-C--------CeEEEEecCCCCc
Q 037288          355 NE--Q---WFELKANIWPSHTTF-----------MPSSISCLQSLQLYDQYFLASSM-D--------GTVKLYDHRLTTR  409 (513)
Q Consensus       355 s~--~---w~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~s~-d--------g~i~lwd~~~~~~  409 (513)
                      ..  .   .|...........+.           .+..... ..++++++.+.++.. +        +.+.++|+.  ..
T Consensus       228 vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~-v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~--t~  304 (368)
T 1mda_H          228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM-VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS--VG  304 (368)
T ss_dssp             CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC-EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS--SC
T ss_pred             EcCCEEEEEECCCCcceEEEEEEeccccccccccccCccee-eEEcCCCCEEEEEeccccCcccccCCCEEEEECC--CC
Confidence            00  0   000000000000000           0011111 358889888876643 2        356799997  44


Q ss_pred             cceEEecCCCCceeEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          410 GAVQSYEGHVNSHTRIQLGVDQSER-FVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       410 ~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                      +.+.++.....   ...+.|+|||+ .+++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus       305 ~vv~~i~vg~~---p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          305 QTSGPISNGHD---SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             CEEECCEEEEE---ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             eEEEEEECCCC---cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            45665543322   23489999998 456666 599999999999999999876443 45666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.40  E-value=4.7e-05  Score=81.33  Aligned_cols=158  Identities=17%  Similarity=0.112  Sum_probs=97.1

Q ss_pred             ccCcEEEEEEcCCCCEEEEE-eC----CeEEEEECCCC--cEEEEeeeCCCeEEEEEecCCc-EEEEEeCC---CeEEEE
Q 037288          255 FKCTVWTADFCTNPSQAVIG-TN----LGAAMVDMETG--MASWVCRSKSDILAQQVIHSGN-VVLCGFRN---GAIVTV  323 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~-s~----~~i~vwd~~~~--~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~d---g~i~iw  323 (513)
                      |...+..+.|+|||++|+.. +.    ..|.++|+.++  ....+..+....... |+++|. +++....+   +.|..+
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~  310 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTV  310 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence            44567889999999988643 21    35899999876  444444455555555 566664 55555443   689999


Q ss_pred             ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC---eEE
Q 037288          324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG---TVK  400 (513)
Q Consensus       324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~  400 (513)
                      |+.++.... .+.+..|..                                 .+.   .++++++.|+....++   .|+
T Consensus       311 d~~~~~~~~-~~~l~~~~~---------------------------------~~~---~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          311 DAANPGPAH-WRDLIPERQ---------------------------------QVL---TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             ETTSCCGGG-CEEEECCCS---------------------------------SCE---EEEEETTEEEEEEEETTEEEEE
T ss_pred             eCCCCCccc-cEEEecCCC---------------------------------CEE---EEEEECCEEEEEEEECCeeEEE
Confidence            998765321 122222221                                 121   4566788777666544   688


Q ss_pred             EEecCCCCccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeE
Q 037288          401 LYDHRLTTRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGED----CKLRIWSIRSGEL  455 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~D----g~v~vwd~~~~~~  455 (513)
                      +||+.   .+....+.. +...+..  +.++++++.|+....+    ++|+.||+.+++.
T Consensus       354 ~~d~~---g~~~~~l~~p~~~~~~~--~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          354 QFDYE---GKRVREVALPGLGSVSG--FNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EECTT---SCEEEEECCSSSSEEEE--CCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEECC---CCeeEEeecCCCceEEe--eecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            88874   334444432 2333333  6677888766655444    7899999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.37  E-value=0.0001  Score=72.25  Aligned_cols=188  Identities=9%  Similarity=-0.028  Sum_probs=112.5

Q ss_pred             EEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEE-eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccc
Q 037288          259 VWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWV-CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCS  333 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~  333 (513)
                      -..++|+|||++|+++.   ++.|.++| .+++.+.. +.....   +.+.|++ ..+++.+.||.+.++|. +++....
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            45899999999988764   35699999 99988776 654332   4455665 55666778999999998 5543310


Q ss_pred             cc---------ccccc---------------CcCeEEEeeCC--eEEEeEeecccCcccceeEeecCCCceEEEEEcCCC
Q 037288          334 SR---------AGRRH---------------RIPYSRLQRND--RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD  387 (513)
Q Consensus       334 ~~---------~~~~h---------------~~~v~~v~~~~--~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  387 (513)
                      ..         .+..+               ...+..++...  ..+...|+.......  .....+.... ...+++++
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~--~~~~~p~g~~-~~~~s~d~  278 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK--ADTWRPGGWQ-QVAYLKSS  278 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc--ccceecCceE-eEEECCCC
Confidence            00         00001               11223332211  000111222111100  0011122222 24678888


Q ss_pred             CEEEEEec----------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeE
Q 037288          388 QYFLASSM----------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSGG-EDCKLRIWSIRSGEL  455 (513)
Q Consensus       388 ~~l~s~s~----------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~-~Dg~v~vwd~~~~~~  455 (513)
                      +.+.++..          ++.|.++|+.  ..+.+.++..... .  ..+.|+|||+ .++++. .++.|.++|+.+++.
T Consensus       279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~--t~~vv~~i~~g~~-p--~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          279 DGIYLLTSEQSAWKLHAAAKEVTSVTGL--VGQTSSQISLGHD-V--DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CEEEEEeccCCcccccCCCCeEEEEECC--CCEEEEEEECCCC-c--CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence            88777653          3579999996  4456677753322 2  3389999999 777777 489999999999999


Q ss_pred             EEEe
Q 037288          456 VFED  459 (513)
Q Consensus       456 ~~~~  459 (513)
                      +..+
T Consensus       354 v~~i  357 (373)
T 2mad_H          354 DQST  357 (373)
T ss_pred             Eeee
Confidence            9884

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.33  E-value=8.9e-05  Score=67.70  Aligned_cols=184  Identities=10%  Similarity=0.012  Sum_probs=115.0

Q ss_pred             cccCc--EEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCc
Q 037288          254 SFKCT--VWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       254 ~h~~~--V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~  329 (513)
                      .|...  ...+.|+. +.++.+. .++.|+++|+.+++.+... -....+.....+++. +....-.++.+.+||..+.+
T Consensus        50 phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           50 PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE
T ss_pred             cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc
Confidence            45443  46788873 4444444 4456999999999876666 555555533344554 44444568999999999887


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR  409 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~  409 (513)
                      ...   ++.                                  ......   .+.++++.|+.+..++.|.++|..  ..
T Consensus       128 ~~~---ti~----------------------------------~~~eGw---GLt~Dg~~L~vSdGs~~l~~iDp~--T~  165 (268)
T 3nok_A          128 RER---TTR----------------------------------YSGEGW---GLCYWNGKLVRSDGGTMLTFHEPD--GF  165 (268)
T ss_dssp             EEE---EEE----------------------------------CSSCCC---CEEEETTEEEEECSSSEEEEECTT--TC
T ss_pred             EEE---EEe----------------------------------CCCcee---EEecCCCEEEEECCCCEEEEEcCC--CC
Confidence            533   111                                  111111   122467778777778999999986  44


Q ss_pred             cceEEecC--CCCceeE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-------------CCCeEEEEEcC
Q 037288          410 GAVQSYEG--HVNSHTR-IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-------------NSVPSAVCWRT  473 (513)
Q Consensus       410 ~~~~~~~~--h~~~v~~-~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-------------~~~v~~v~~~p  473 (513)
                      ..+.++..  +...+.. -.+.+. +|+..+..-.+..|.+-|..+++.+..+...             ....+++||+|
T Consensus       166 ~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp  244 (268)
T 3nok_A          166 ALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP  244 (268)
T ss_dssp             CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred             eEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence            45555442  2222211 114444 6754444446889999999999999886432             24679999999


Q ss_pred             C-CceEEeeC
Q 037288          474 Q-RSMGPQIE  482 (513)
Q Consensus       474 ~-~~~~~t~~  482 (513)
                      + ..+|+|.-
T Consensus       245 ~~~rlfVTGK  254 (268)
T 3nok_A          245 GSGRIFMTGK  254 (268)
T ss_dssp             TTCCEEEEET
T ss_pred             CCCEEEEeCC
Confidence            8 67777653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.27  E-value=5.1e-05  Score=74.73  Aligned_cols=187  Identities=12%  Similarity=-0.016  Sum_probs=115.3

Q ss_pred             cEEEEEEcCCCCEEEEE-eC------CeEEEEECCCCcEEEEeeeC-CC---eEEEEEecCCcEEEEEe-----------
Q 037288          258 TVWTADFCTNPSQAVIG-TN------LGAAMVDMETGMASWVCRSK-SD---ILAQQVIHSGNVVLCGF-----------  315 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s~------~~i~vwd~~~~~~~~~~~~~-~~---V~~l~~~~~~~~l~sg~-----------  315 (513)
                      .-..+...|+| +++++ ++      +++.++|..+++.+...... ..   -..+.|+|+++.+++..           
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            34567788999 55544 33      56999999999988877622 21   34578899999888884           


Q ss_pred             --------CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEE-EEcCC
Q 037288          316 --------RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQ-SLQLY  386 (513)
Q Consensus       316 --------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~-~~~~~  386 (513)
                              .+.+|.+||+.+++...   ++.--..                               ......+. .++|+
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~~k~~~---tI~vg~~-------------------------------g~~P~~i~f~~~Pd  263 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRKRKRIH---SLTLGEE-------------------------------NRMALELRPLHDPT  263 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTTTEEEE---EEESCTT-------------------------------EEEEEEEEECSSTT
T ss_pred             chhhhhhccCCEEEEEECCCCcEee---EEecCCC-------------------------------CCccceeEeeECCC
Confidence                    37899999998765322   1111000                               00011111 35888


Q ss_pred             CCEEEEEe------cCCeEEEEecCCCCccceEEe--cCC----------------CCceeEEEEEEcCCCCEEEEEeC-
Q 037288          387 DQYFLASS------MDGTVKLYDHRLTTRGAVQSY--EGH----------------VNSHTRIQLGVDQSERFVMSGGE-  441 (513)
Q Consensus       387 ~~~l~s~s------~dg~i~lwd~~~~~~~~~~~~--~~h----------------~~~v~~~~~~~s~~g~~l~sg~~-  441 (513)
                      ++++.+++      .+++|.+|..........+.+  ...                .+..  ..+.+++||++|+++.. 
T Consensus       264 g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p--a~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          264 KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV--TDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC--CCEEECTTSCEEEEEETT
T ss_pred             CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce--eEEEECCCCCEEEEEeCC
Confidence            88877766      456787765531111112211  100                1122  33788999999988776 


Q ss_pred             CCcEEEEeCCC---CeEEEEecCCCC--------------CeEEEEEcCCC-ceEEee
Q 037288          442 DCKLRIWSIRS---GELVFEDKFSNS--------------VPSAVCWRTQR-SMGPQI  481 (513)
Q Consensus       442 Dg~v~vwd~~~---~~~~~~~~~~~~--------------~v~~v~~~p~~-~~~~t~  481 (513)
                      .+.|.+||+..   .+++..+...+.              ....++++|++ .++++.
T Consensus       342 ~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          342 IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            68999999863   456666543211              36889999996 455555

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.25  E-value=9.8e-05  Score=78.57  Aligned_cols=207  Identities=12%  Similarity=0.140  Sum_probs=114.7

Q ss_pred             EEEEcCCCCEEEEEeCC--------------------eEEEEECCCCcEEEEeeeC----------CCeEEEEEecCCc-
Q 037288          261 TADFCTNPSQAVIGTNL--------------------GAAMVDMETGMASWVCRSK----------SDILAQQVIHSGN-  309 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~--------------------~i~vwd~~~~~~~~~~~~~----------~~V~~l~~~~~~~-  309 (513)
                      .+++.+++.++..+..+                    .|..+|..+|+.++.++..          ..+.......+|. 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            57888888877777543                    3899999999999987621          1222223334665 


Q ss_pred             --EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE--eecccCcccceeEeecCC----CceE
Q 037288          310 --VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ--WFELKANIWPSHTTFMPS----SISC  379 (513)
Q Consensus       310 --~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~--w~~~~~~~~~~~~~~~~~----~v~~  379 (513)
                        .|+.++.+|.++++|.++++... -..+.. ......++...  -+....  |....++    ..+..+.    ..-.
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~-~~~~~~-~~w~~~~~~~~~~pi~~~~~~~~~~~~~----~~~~~p~~~Gg~~w~  392 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLS-AKGIVP-QSWTKGMDMKTGRPILDEENAAYWKNGK----RNLVTPAFWGAHDWQ  392 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEE-EEESSC-CSSEEEEETTTTEEEECHHHHCTTTSSS----CEEESSCTTCSSCSS
T ss_pred             EEEEEEECCCCeEEEEECCCCCEec-cccccc-cccccccCccCCCcccchhhccccCCCC----eeEeCCCcccccCCC
Confidence              78999999999999999987642 011110 01111111000  000000  0000000    0000000    0000


Q ss_pred             EEEEcCCCCEEEEEec---------------------------------------------CCeEEEEecCCCCccceEE
Q 037288          380 LQSLQLYDQYFLASSM---------------------------------------------DGTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       380 ~~~~~~~~~~l~s~s~---------------------------------------------dg~i~lwd~~~~~~~~~~~  414 (513)
                      -.+++|+..++++...                                             +|.|..||+.  ..+.+-.
T Consensus       393 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~--tG~~~W~  470 (689)
T 1yiq_A          393 PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV--KQQAAWE  470 (689)
T ss_dssp             CCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT--TTEEEEE
T ss_pred             cceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC--CCCeEeE
Confidence            0245555555554422                                             4789999986  3444545


Q ss_pred             ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCCCceE
Q 037288          415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQRSMG  478 (513)
Q Consensus       415 ~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~  478 (513)
                      +..+... ..  -.+...+.+++.|+.||.|+.||.++|+++..++...+. ..-+.|..++..+
T Consensus       471 ~~~~~~~-~~--g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          471 VPYVTIF-NG--GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEESSSC-CC--CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccCCCCc-cC--ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            5433322 11  233456889999999999999999999999988654332 2446676675433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.17  E-value=4.7e-05  Score=73.77  Aligned_cols=192  Identities=7%  Similarity=-0.063  Sum_probs=108.6

Q ss_pred             CcEEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEe-------eeCCCeEEEEEecCCcEEEEEeC-----CCeEE
Q 037288          257 CTVWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWVC-------RSKSDILAQQVIHSGNVVLCGFR-----NGAIV  321 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~-------~~~~~V~~l~~~~~~~~l~sg~~-----dg~i~  321 (513)
                      ..+..++++++|+++++..   ++.++||.+.+++....-       .+-..+..++++++++++++-..     ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            6789999999999988853   232455655455433110       12346899999999987766544     58999


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-CCEEEEEe---cCC
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-DQYFLASS---MDG  397 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s---~dg  397 (513)
                      +||+.+++...   .+.-...                           .......... +.++++ +..+++..   .++
T Consensus        97 ~~d~~tg~~~~---~~~~~~~---------------------------~~~~~~~~~~-v~vd~~~g~~yvtd~~~~~~~  145 (343)
T 2qe8_A           97 AWDTLNNQLSR---VIYLPPP---------------------------ITLSNSFVND-LAVDLIHNFVYISDPAPDDKA  145 (343)
T ss_dssp             EEETTTTEEEE---EEECCTT---------------------------TSCTTCCCCE-EEEETTTTEEEEEECCSGGGC
T ss_pred             EEECCCCeEEE---EEECChh---------------------------hcccccccce-EEEecCCCEEEEEcCccCCCC
Confidence            99998776322   1110000                           0000111223 345554 44445554   678


Q ss_pred             eEEEEecCCCCccceEEecCCCCc---------------------------eeEEEEEEcCCCCEEEEEeCCC-cEEEEe
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNS---------------------------HTRIQLGVDQSERFVMSGGEDC-KLRIWS  449 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~---------------------------v~~~~~~~s~~g~~l~sg~~Dg-~v~vwd  449 (513)
                      .|.+||+.  .......+.+|...                           .....++++|+|+.|+.+..++ .|+.++
T Consensus       146 ~i~v~d~~--~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          146 ALIRVDLQ--TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EEEEEETT--TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             eEEEEECC--CCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            99999985  33333334332100                           1123488999999998887766 444444


Q ss_pred             CC---CCe--------EEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          450 IR---SGE--------LVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       450 ~~---~~~--------~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      ..   .+.        .+..+ .+......+++++++.++++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~  266 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDL  266 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEG
T ss_pred             HHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEcc
Confidence            21   111        00111 1223456788888877766654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.10  E-value=0.00012  Score=71.41  Aligned_cols=156  Identities=10%  Similarity=-0.043  Sum_probs=99.8

Q ss_pred             EEcCCCCEEEEEe------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe----------CCCeEEEEECC
Q 037288          263 DFCTNPSQAVIGT------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF----------RNGAIVTVDVR  326 (513)
Q Consensus       263 ~~s~~g~~l~s~s------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~----------~dg~i~iwd~~  326 (513)
                      ...|++..+.+..      ++.|.+.|..+++.+..+.....-. ++++|||+.++++.          .++.|.+||..
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            3357887666553      3569999999999888887444344 99999998887765          46789999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec--CCeEEEEec
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM--DGTVKLYDH  404 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~--dg~i~lwd~  404 (513)
                      +.+...   .+.-..+                          ........... ..++|+|++++++..  ++.|.++|+
T Consensus       118 t~~v~~---~I~v~~g--------------------------~r~~~g~~P~~-~a~spDGk~lyVan~~~~~~VsVID~  167 (386)
T 3sjl_D          118 TLLPTA---DIELPDA--------------------------PRFLVGTYPWM-TSLTPDGKTLLFYQFSPAPAVGVVDL  167 (386)
T ss_dssp             TCCEEE---EEEETTC--------------------------CCCCBSCCGGG-EEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             CCeEEE---EEECCCc--------------------------cccccCCCCce-EEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence            877533   1110000                          00000001111 478899999988874  689999999


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEE
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELV  456 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~  456 (513)
                      .  ....+.++.... .    ...+....+.+++.+.||.+.+.++.+ ++..
T Consensus       168 ~--t~~vv~tI~v~g-~----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          168 E--GKAFKRMLDVPD-C----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             T--TTEEEEEEECCS-E----EEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             C--CCcEEEEEECCC-c----ceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence            7  555666664321 1    122222345667778888888888876 5543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.08  E-value=0.00021  Score=75.80  Aligned_cols=207  Identities=15%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             EEEEEcCCCCEEEEEeCC--------------------eEEEEECCCCcEEEEeeeC----------CCeEEEEEecCC-
Q 037288          260 WTADFCTNPSQAVIGTNL--------------------GAAMVDMETGMASWVCRSK----------SDILAQQVIHSG-  308 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~s~~--------------------~i~vwd~~~~~~~~~~~~~----------~~V~~l~~~~~~-  308 (513)
                      ..+++++++..+..+..+                    .|..+|..+|+.++.++..          .....+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            357788888877766432                    4899999999999887621          122333444578 


Q ss_pred             --cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC----CceEEEE
Q 037288          309 --NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS----SISCLQS  382 (513)
Q Consensus       309 --~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~----~v~~~~~  382 (513)
                        ..|+.++.+|.++++|..+++..... .+.. ......++-.-+.+.   . .............+.    ..-...+
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~-~~~~-~~~~~~~d~~g~~~~---~-~~~~~~~~~~~~~P~~~G~~~w~~~a  399 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAK-NFVP-VNWASGYDKHGKPIG---I-AAARDGSKPQDAVPGPYGAHNWHPMS  399 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEE-ESSC-CSSEEEECTTSCEEE---C-GGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccc-cccc-cCcccccCCCCceee---c-cccCcCCCccEECcCcccccCCCCce
Confidence              68999999999999999998764311 1100 011111110000000   0 000000000000000    0000135


Q ss_pred             EcCCCCEEEEEec-------------------------------------------CCeEEEEecCCCCccceEEecCCC
Q 037288          383 LQLYDQYFLASSM-------------------------------------------DGTVKLYDHRLTTRGAVQSYEGHV  419 (513)
Q Consensus       383 ~~~~~~~l~s~s~-------------------------------------------dg~i~lwd~~~~~~~~~~~~~~h~  419 (513)
                      ++|+..++++...                                           .|.|..||+.  ..+.+-.+.. .
T Consensus       400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~--tG~~~W~~~~-~  476 (677)
T 1kb0_A          400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV--AQKAAWSVEH-V  476 (677)
T ss_dssp             EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT--TTEEEEEEEE-S
T ss_pred             EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC--CCcEEeecCC-C
Confidence            5666666665543                                           2789999986  3334444432 2


Q ss_pred             CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC-CeEEEEEcCCCce
Q 037288          420 NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS-VPSAVCWRTQRSM  477 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~  477 (513)
                      .....  ..+..++..++.++.||.+++||..+++++..+..... ...-+.|..++..
T Consensus       477 ~~~~~--g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          477 SPWNG--GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (677)
T ss_dssp             SSCCC--CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCcC--cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence            22222  23445688899999999999999999999999865432 2334566666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.01  E-value=0.0001  Score=75.20  Aligned_cols=212  Identities=9%  Similarity=-0.015  Sum_probs=125.3

Q ss_pred             cEEEEEE-c-CCCCEEEEEe-------------------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC
Q 037288          258 TVWTADF-C-TNPSQAVIGT-------------------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR  316 (513)
Q Consensus       258 ~V~~~~~-s-~~g~~l~s~s-------------------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~  316 (513)
                      ....+++ + |++.++.+++                   ++.+.++|.++.+..+.+.-...-..++++|+|+++++.+.
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~  214 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  214 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEec
Confidence            4667777 4 8888887774                   12488999999998888775446677889999999999987


Q ss_pred             CC---------------eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccc-eeEeecCCCceEE
Q 037288          317 NG---------------AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP-SHTTFMPSSISCL  380 (513)
Q Consensus       317 dg---------------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~-~~~~~~~~~v~~~  380 (513)
                      +.               .|.+.|............... -..|.-|+           ..+..... ...+.......+ 
T Consensus       215 ~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~-i~~V~VID-----------~~~~~~~~~~~~Ipvg~~PhG-  281 (595)
T 1fwx_A          215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE-LNGVKVVD-----------GRKEASSLFTRYIPIANNPHG-  281 (595)
T ss_dssp             CTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE-ETTEEEEE-----------CSGGGCCSSEEEEEEESSCCC-
T ss_pred             CcccCcchhhccccccceEEEeeccceeEeccCCCeeE-ECcEEEEe-----------CcccCCceeEEEEecCCCceE-
Confidence            63               356666432211000000000 01122222           12100011 223333333334 


Q ss_pred             EEEcCCCCEEEEEe-cCCeEEEEecCCCC---------c-cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          381 QSLQLYDQYFLASS-MDGTVKLYDHRLTT---------R-GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       381 ~~~~~~~~~l~s~s-~dg~i~lwd~~~~~---------~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      +.++|||+++++++ .+.+|.++|+...+         . ..+.......++   +.++|+|+|...++...|+.|.+||
T Consensus       282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP---~h~aF~~dG~aY~t~~ldsqV~kwd  358 (595)
T 1fwx_A          282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP---LHTAFDGRGNAYTSLFLDSQVVKWN  358 (595)
T ss_dssp             EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE---EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc---ceEEECCCCeEEEEEecCCcEEEEE
Confidence            47899999888776 48899999997211         0 022233322332   4589999994444566799999999


Q ss_pred             CCC----------CeEEEEecCCCCCe-----EEEEEcCCCceEEeeCCCe
Q 037288          450 IRS----------GELVFEDKFSNSVP-----SAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       450 ~~~----------~~~~~~~~~~~~~v-----~~v~~~p~~~~~~t~~~~~  485 (513)
                      +.+          .+.+..+..|-.+-     .++..+|++.+|.+....-
T Consensus       359 i~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          359 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             hhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence            987          66777777665432     1224468866555554433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.00  E-value=0.00055  Score=67.83  Aligned_cols=192  Identities=10%  Similarity=0.057  Sum_probs=106.3

Q ss_pred             EEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccccc
Q 037288          259 VWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      -..+.|+|||+++.++.   ++.|.+.|+.+++.+..+.-...   ....|++ ..+++.+.||.+.+.|+..++.....
T Consensus       179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            34679999999888764   35699999999998877764332   2233433 45555566777666666333221000


Q ss_pred             -ccccccCcCeE-EEeeCC---eEEEeE-------eecccCcccceeEe-----------ecCCCceEEEEEcCCCCEEE
Q 037288          335 -RAGRRHRIPYS-RLQRND---RVTNEQ-------WFELKANIWPSHTT-----------FMPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       335 -~~~~~h~~~v~-~v~~~~---~~~s~~-------w~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~  391 (513)
                       ..+.....++. .+.+.+   .++...       .+...........+           ..+..... ..++++++.+.
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~-va~s~dg~rly  334 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ-TAYHRQSDRIY  334 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC-EEEEGGGTEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee-eEEcCCCCEEE
Confidence             00000000100 011111   000000       11111100000000           01111111 36788888776


Q ss_pred             EEec----------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEe
Q 037288          392 ASSM----------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSGG-EDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       392 s~s~----------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~-~Dg~v~vwd~~~~~~~~~~  459 (513)
                      +...          ++.|.++|+.  ..+.+.++.....   ...+.|+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~--T~kvv~~I~vg~~---P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAE--TGERINKIELGHE---IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETT--TCCEEEEEEEEEE---ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEecccccccccCCCCEEEEEECC--CCeEEEEEECCCC---cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            6542          3579999997  5556776653221   23489999999 888888 4999999999999999887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.00  E-value=0.0042  Score=61.20  Aligned_cols=182  Identities=10%  Similarity=0.051  Sum_probs=111.8

Q ss_pred             CCCCEEEEEe--CCeEEEEECCCC----cEEEEee-------eC-CCeEEEEEecCCcEEEEEeCC------CeEEEEEC
Q 037288          266 TNPSQAVIGT--NLGAAMVDMETG----MASWVCR-------SK-SDILAQQVIHSGNVVLCGFRN------GAIVTVDV  325 (513)
Q Consensus       266 ~~g~~l~s~s--~~~i~vwd~~~~----~~~~~~~-------~~-~~V~~l~~~~~~~~l~sg~~d------g~i~iwd~  325 (513)
                      .++++|...+  ++.|.++|+.+.    +...++.       .. ..-..+...|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7888877654  456999999765    4555552       11 134566778999 66666555      78999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-----------
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-----------  394 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-----------  394 (513)
                      .+.+...   ++.....+                               ...---.+++|+++.++++.           
T Consensus       172 ~T~~v~~---~~~~~~~~-------------------------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          172 YSFEPLG---KWEIDRGD-------------------------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             TTCCEEE---ECCSBCTT-------------------------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             CCCeEEE---EEccCCCC-------------------------------ccccceEEECCCCCEEEEccCcCcccccccc
Confidence            8877533   22111000                               00000147889999888874           


Q ss_pred             --------cCCeEEEEecCCCCccceEEecCCCC--ceeEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEE--
Q 037288          395 --------MDGTVKLYDHRLTTRGAVQSYEGHVN--SHTRIQLGVDQSERFVMSGG------EDCKLRIWSIRSGELV--  456 (513)
Q Consensus       395 --------~dg~i~lwd~~~~~~~~~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~------~Dg~v~vwd~~~~~~~--  456 (513)
                              .+..|.+||+.  ....++++.....  ....+.++|+|++++++.++      .+++|.+|....++..  
T Consensus       218 ~~~~~~~~~~d~V~v~D~~--~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~  295 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLR--KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE  295 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETT--TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred             chhhhhhccCCEEEEEECC--CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence                    36899999997  4446666654311  11223345599999988877      4668888776655321  


Q ss_pred             EEe--cCC----------------CCCeEEEEEcCCC-ceEEeeCCC
Q 037288          457 FED--KFS----------------NSVPSAVCWRTQR-SMGPQIEGK  484 (513)
Q Consensus       457 ~~~--~~~----------------~~~v~~v~~~p~~-~~~~t~~~~  484 (513)
                      ..+  ...                ...+..+.++|++ .++++..+.
T Consensus       296 ~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~  342 (462)
T 2ece_A          296 KVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI  342 (462)
T ss_dssp             EEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred             EEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence            111  110                2347889999995 455555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.99  E-value=0.0089  Score=54.61  Aligned_cols=204  Identities=10%  Similarity=0.062  Sum_probs=124.8

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .+.+-...+..++++|++..|.+..  ++.|...|.. ++.+..+.  .....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3556667899999999876555443  3448888998 87777664  33568899999888877777678899999887


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      .......+...          .+                 +............ +++++.++.|.++.......+|.+.-
T Consensus       100 ~~~~i~~~~~~----------~~-----------------~~~~~~~N~g~EG-LA~d~~~~~L~va~E~~p~~i~~~~g  151 (255)
T 3qqz_A          100 PNSEVKILKKI----------KI-----------------PLQESPTNCGFEG-LAYSRQDHTFWFFKEKNPIEVYKVNG  151 (255)
T ss_dssp             TTCCEEEEEEE----------EC-----------------CCSSCCCSSCCEE-EEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             CCCeeeeeeee----------cc-----------------ccccccccCCcce-EEEeCCCCEEEEEECcCCceEEEEcc
Confidence            65421100000          00                 0000011122333 46777887777776655555555531


Q ss_pred             C-CccceEEec-------CCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecCCC---------CCeEE
Q 037288          407 T-TRGAVQSYE-------GHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGELVFEDKFSN---------SVPSA  468 (513)
Q Consensus       407 ~-~~~~~~~~~-------~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~---------~~v~~  468 (513)
                      . ....+..+.       .+......  ++++|. +.+++.......|.++|.. |+.+..+.-..         .....
T Consensus       152 ~~~~~~l~i~~~~~~~~~~~~~d~S~--l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG  228 (255)
T 3qqz_A          152 LLSSNELHISKDKALQRQFTLDDVSG--AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG  228 (255)
T ss_dssp             TTCSSCCEEEECHHHHHTCCSSCCCE--EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred             cccCCceeeecchhhccccccCCcee--EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence            0 111222221       11222334  788886 5556666778889999965 55666643321         24689


Q ss_pred             EEEcCCCceEEeeCCCee
Q 037288          469 VCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       469 v~~~p~~~~~~t~~~~~~  486 (513)
                      |+|.+++.++++++.+..
T Consensus       229 ia~d~~G~lyIvsE~n~~  246 (255)
T 3qqz_A          229 VAMDASGNIYIVSEPNRF  246 (255)
T ss_dssp             EEECTTCCEEEEETTTEE
T ss_pred             eEECCCCCEEEEcCCceE
Confidence            999999999999998754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.99  E-value=0.00015  Score=69.33  Aligned_cols=178  Identities=8%  Similarity=0.051  Sum_probs=106.2

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR  335 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  335 (513)
                      ..+.++...+++.+++...++++..+|.. ++..+..... ..+.++.+.+++.+.+ ++  +.|..+| .+++...   
T Consensus       137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~---  208 (330)
T 3hxj_A          137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW---  208 (330)
T ss_dssp             CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE---
T ss_pred             ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE---
Confidence            34555666677876665556789999998 8777666533 3467777777777554 44  7888998 5443221   


Q ss_pred             cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288          336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY  415 (513)
Q Consensus       336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~  415 (513)
                      ......                                 ..+.+ ....+++. |.+++.++.|..+|.   ....+..+
T Consensus       209 ~~~~~~---------------------------------~~~~~-~~~~~~g~-l~v~t~~~gl~~~~~---~g~~~~~~  250 (330)
T 3hxj_A          209 NFYAGY---------------------------------WTVTR-PAISEDGT-IYVTSLDGHLYAINP---DGTEKWRF  250 (330)
T ss_dssp             EECCSS---------------------------------CCCSC-CEECTTSC-EEEEETTTEEEEECT---TSCEEEEE
T ss_pred             EEccCC---------------------------------cceec-eEECCCCe-EEEEcCCCeEEEECC---CCCEeEEe
Confidence            111111                                 11222 23444554 555777888888874   34444555


Q ss_pred             cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .........  +.+++++ .|..++.+|.|..+|. +++.+..+......+.++...+++.+++++..+
T Consensus       251 ~~~~~~~~~--~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          251 KTGKRIESS--PVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             ECSSCCCSC--CEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTS
T ss_pred             eCCCCcccc--ceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCC
Confidence            433332223  3445556 4677888889999996 787777766555556666665665444444333

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.96  E-value=0.00042  Score=66.05  Aligned_cols=195  Identities=12%  Similarity=0.128  Sum_probs=113.5

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeCC-CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeE
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKS-DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYS  345 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~-~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  345 (513)
                      ++.+.+...++++..+|.. ++..+...... .+.++...+++. |..|+.++.|..+|.. ++...   .+.....   
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~---~~~~~~~---  177 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW---RFKTNDA---  177 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE---EEECSSC---
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE---EEecCCC---
Confidence            5555444456779999998 87776665333 356667766776 5567788999999988 54321   1110000   


Q ss_pred             EEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEE
Q 037288          346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI  425 (513)
Q Consensus       346 ~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~  425 (513)
                                                    .+.+ ....+++.+++ ++  +.|..+| .  ....+..+......+.. 
T Consensus       178 ------------------------------~~~~-~~~d~~g~l~v-~t--~~l~~~d-~--~g~~~~~~~~~~~~~~~-  219 (330)
T 3hxj_A          178 ------------------------------ITSA-ASIGKDGTIYF-GS--DKVYAIN-P--DGTEKWNFYAGYWTVTR-  219 (330)
T ss_dssp             ------------------------------CCSC-CEECTTCCEEE-ES--SSEEEEC-T--TSCEEEEECCSSCCCSC-
T ss_pred             ------------------------------ceee-eEEcCCCEEEE-Ee--CEEEEEC-C--CCcEEEEEccCCcceec-
Confidence                                          1111 23445666444 44  7889999 4  44445555544444544 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC-Ceee---------eeccCCc-
Q 037288          426 QLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG-KIHE---------EFDLGQR-  494 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~-~~~~---------~~~~~~~-  494 (513)
                       +.++++|. |..++.++.|..+| .+++.+..+......+..+...+++.+++++.. .+..         .+..... 
T Consensus       220 -~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~  296 (330)
T 3hxj_A          220 -PAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWI  296 (330)
T ss_dssp             -CEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCC
T ss_pred             -eEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCcc
Confidence             66677775 56677788899998 466666665554444455666666555544443 4431         1111100 


Q ss_pred             -------ccceeeeeeccceeeee
Q 037288          495 -------HSWEAWIGTQEGLFRMN  511 (513)
Q Consensus       495 -------~~~~~~~gs~~g~~~~~  511 (513)
                             ..-..|+|+.+|.+++.
T Consensus       297 ~~~~~~d~~g~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          297 IATPVIDENGTIYFGTRNGKFYAL  320 (330)
T ss_dssp             CSCCEECTTCCEEEECTTSCEEEE
T ss_pred             ccceEEcCCCEEEEEcCCCeEEEE
Confidence                   11247889999988764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.94  E-value=0.00028  Score=68.63  Aligned_cols=54  Identities=11%  Similarity=-0.139  Sum_probs=44.3

Q ss_pred             eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe----------CCCeEEEEECCCCcccc
Q 037288          278 GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF----------RNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~  332 (513)
                      +|.++|..+++.+..+.....- .+.++||++.++++.          .++.|.+||+.+.+...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            7889999999988888743333 799999998888886          47899999999987644

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.89  E-value=0.00068  Score=69.17  Aligned_cols=206  Identities=11%  Similarity=0.055  Sum_probs=117.3

Q ss_pred             CCCCEEEEEe--CCeEEEEECCCCcEEEEee--eCCCeEEEEE-e-cCCcEEEEEe------------------CCCeEE
Q 037288          266 TNPSQAVIGT--NLGAAMVDMETGMASWVCR--SKSDILAQQV-I-HSGNVVLCGF------------------RNGAIV  321 (513)
Q Consensus       266 ~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~-~-~~~~~l~sg~------------------~dg~i~  321 (513)
                      +||+++....  ++.|.+.|+.+.++..++.  .......+++ . |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4788777664  3459999999999887554  3455888888 4 8999988885                  246788


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCC---eEEEeEeecccCcccceeEeecCCCceEEEE--------EcCCCCEE
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQWFELKANIWPSHTTFMPSSISCLQS--------LQLYDQYF  390 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~l  390 (513)
                      ++|..+.+...   .+.--. ....+++++   .+++.+.+...+........   .....+..        +.++|++.
T Consensus       179 vID~~t~~v~~---qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~---~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          179 AVDADKWEVAW---QVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA---AEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEETTTTEEEE---EEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC---CSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEECCCCeEEE---EEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccc---cccceEEEeeccceeEeccCCCee
Confidence            88888765432   111100 122333333   33333332222111000000   00000000        12233332


Q ss_pred             EEEecCCeEEEEecCCCCccc-eEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe------------EE
Q 037288          391 LASSMDGTVKLYDHRLTTRGA-VQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGE------------LV  456 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~------------~~  456 (513)
                      ..    +.|.+.|.+..+... +..+.....+ .+  +.++|||+++++++ .+.+|.++|+.+.+            .+
T Consensus       252 ~i----~~V~VID~~~~~~~~~~~~Ipvg~~P-hG--v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          252 EL----NGVKVVDGRKEASSLFTRYIPIANNP-HG--CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             EE----TTEEEEECSGGGCCSSEEEEEEESSC-CC--EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             EE----CcEEEEeCcccCCceeEEEEecCCCc-eE--EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence            22    458888887211223 4444322222 23  78999999887665 58899999999663            34


Q ss_pred             EEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          457 FEDKFSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       457 ~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ..... +.....++|+|++..+++...+-.
T Consensus       325 ~~v~v-G~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          325 AEPEL-GLGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             ECCBC-CSCEEEEEECTTSEEEEEETTTTE
T ss_pred             EEcCC-CCCcceEEECCCCeEEEEEecCCc
Confidence            44433 455889999999977777766644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.84  E-value=0.018  Score=52.99  Aligned_cols=210  Identities=6%  Similarity=-0.045  Sum_probs=119.6

Q ss_pred             CcEEEEEEcCCCCEEEEE--eCCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCcccc
Q 037288          257 CTVWTADFCTNPSQAVIG--TNLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~--s~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ..+..+++++++..|..+  .++.|..+++..+......... .....+++++++. ++++-..++.|.++|+.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            457899999976655544  3456999999876544433322 4688999999764 45555567899999987543211


Q ss_pred             ccccccccCcCeEEEeeCC---eEEEeEeecccCc-------ccceeEee-cCCCceEEEEEcCCCCEEEE-EecCCeEE
Q 037288          333 SSRAGRRHRIPYSRLQRND---RVTNEQWFELKAN-------IWPSHTTF-MPSSISCLQSLQLYDQYFLA-SSMDGTVK  400 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~l~s-~s~dg~i~  400 (513)
                       +  ..........+++++   .++...+....+.       ......+. ..-....-+++++++..|.. -...+.|.
T Consensus       116 -~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          116 -L--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             -E--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -E--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence             1  111123457777776   3333332210000       00111111 11122233477887665554 44568999


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCC-CCeEEEEEcCCCc
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSN-SVPSAVCWRTQRS  476 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~  476 (513)
                      ++|+.  .......+.+...+ ..  ++++  +..|+.+. .++.|..+|..+++.+..+.... ....++++.|+..
T Consensus       193 ~~~~~--g~~~~~~~~~~~~P-~g--i~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          193 CLNPA--QPGRRKVLEGLQYP-FA--VTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEETT--EEEEEEEEECCCSE-EE--EEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEecC--CCceEEEecCCCCc-eE--EEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            99985  22222222322222 23  4544  44555544 56899999999999998876543 2467888888743

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.84  E-value=0.012  Score=55.62  Aligned_cols=220  Identities=7%  Similarity=-0.003  Sum_probs=121.4

Q ss_pred             CcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC-C-eEEEEECCCCccccc
Q 037288          257 CTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN-G-AIVTVDVRKRQRGCS  333 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d-g-~i~iwd~~~~~~~~~  333 (513)
                      .....++|+++|+++++. .++.|..||.... .............+++.++|+++++.... + .|..+|..+++... 
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET-  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE-
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-
Confidence            457789999999977776 4566999998754 44444445568999999999966655432 2 47777776665322 


Q ss_pred             cccccccCcCeEEEeeCC--eE-EEeE-----eecccC--cccceeE---e---ecCC---CceEEEEEcCCCCEEEE-E
Q 037288          334 SRAGRRHRIPYSRLQRND--RV-TNEQ-----WFELKA--NIWPSHT---T---FMPS---SISCLQSLQLYDQYFLA-S  393 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~--~~-~s~~-----w~~~~~--~~~~~~~---~---~~~~---~v~~~~~~~~~~~~l~s-~  393 (513)
                      +..+.. ......++..+  .+ ++..     |.....  .......   .   ....   ....+   ++++..|.+ -
T Consensus       110 ~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi---s~dg~~lyv~d  185 (306)
T 2p4o_A          110 LLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL---KRFGNFLYVSN  185 (306)
T ss_dssp             EEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE---EEETTEEEEEE
T ss_pred             EEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc---CcCCCEEEEEe
Confidence            112111 11112222112  22 2211     222211  0000000   0   0001   12222   567765554 4


Q ss_pred             ecCCeEEEEecCC-CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EecCCCCCeEEEE
Q 037288          394 SMDGTVKLYDHRL-TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF--EDKFSNSVPSAVC  470 (513)
Q Consensus       394 s~dg~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~--~~~~~~~~v~~v~  470 (513)
                      ...+.|..||+.. ........+... .....  ++++++|++.++....+.|.++|.. ++...  .+......+++++
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~g--i~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a  261 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDD--FAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA  261 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEES-CCCSS--EEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEecc-CCCCC--eEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence            4578999999852 111112222111 11122  7889999887777778899999975 66533  3333335689999


Q ss_pred             Ec---CC-CceEEeeCCCee
Q 037288          471 WR---TQ-RSMGPQIEGKIH  486 (513)
Q Consensus       471 ~~---p~-~~~~~t~~~~~~  486 (513)
                      |.   |+ ..+++++.....
T Consensus       262 ~~g~~~d~~~LyVt~~~~~~  281 (306)
T 2p4o_A          262 FGQTEGDCTAIYVVTNGGMF  281 (306)
T ss_dssp             ECCSTTTTTEEEEEECTTSS
T ss_pred             EecccCCCCEEEEECCCCcc
Confidence            98   77 677777776533

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.83  E-value=0.0011  Score=64.61  Aligned_cols=145  Identities=17%  Similarity=0.139  Sum_probs=90.0

Q ss_pred             EEEEE-eCCeEEEEECCCCcEEEEeeeCCCe-----E---EEEEec--CCcEEEEEeCCCeEEEEECCCCcccccccccc
Q 037288          270 QAVIG-TNLGAAMVDMETGMASWVCRSKSDI-----L---AQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR  338 (513)
Q Consensus       270 ~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V-----~---~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  338 (513)
                      .+..+ .++.+..+|..+|+.++......+-     .   .+.-.|  .+..++.++.++.+..+|..+++...   ...
T Consensus       190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w---~~~  266 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW---KRE  266 (376)
T ss_dssp             EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE---EEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe---ecc
Confidence            44445 4567999999999988877633210     0   010111  24667778889999999998886432   000


Q ss_pred             ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCC
Q 037288          339 RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH  418 (513)
Q Consensus       339 ~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h  418 (513)
                                                         ....... ..  ++..+.+++.++.|..+|..  ....+......
T Consensus       267 -----------------------------------~~~~~~~-~~--~~~~l~~~~~~g~l~~~d~~--tG~~~w~~~~~  306 (376)
T 3q7m_A          267 -----------------------------------LGSVNDF-IV--DGNRIYLVDQNDRVMALTID--GGVTLWTQSDL  306 (376)
T ss_dssp             -----------------------------------CCCEEEE-EE--ETTEEEEEETTCCEEEEETT--TCCEEEEECTT
T ss_pred             -----------------------------------CCCCCCc-eE--ECCEEEEEcCCCeEEEEECC--CCcEEEeeccc
Confidence                                               0011111 12  36677788889999999986  33344444311


Q ss_pred             -CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288          419 -VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       419 -~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~  461 (513)
                       ......  ..+  .+..|+.++.+|.|+++|..+++.+.....
T Consensus       307 ~~~~~~~--~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          307 LHRLLTS--PVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             TTSCCCC--CEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcccC--CEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence             111111  111  257889999999999999999999887665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.80  E-value=0.043  Score=59.29  Aligned_cols=221  Identities=12%  Similarity=0.054  Sum_probs=132.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeee--------CCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRS--------KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~--------~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ...|.++...+++.+.+...++++..||..+++.......        ...|.++...++|.+.+ |+.+ -|.+||..+
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~  291 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT  291 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence            4578888888888877666566899999988765443321        24599999888887554 4455 488899876


Q ss_pred             Cccccccccc-----cccCcCeEEEeeCC--eEEEeE-------eecccCcccceeEe----e-cCCCceEEEEEcCCCC
Q 037288          328 RQRGCSSRAG-----RRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPSHTT----F-MPSSISCLQSLQLYDQ  388 (513)
Q Consensus       328 ~~~~~~~~~~-----~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~  388 (513)
                      ..... +...     .-....|.++...+  .+..|+       ++............    . ....|.++ ...++|+
T Consensus       292 ~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i-~~d~~g~  369 (795)
T 4a2l_A          292 DSFAS-YSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCI-VEDKDKN  369 (795)
T ss_dssp             TEEEE-ECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEE-EECTTSC
T ss_pred             CeEEE-EecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEE-EECCCCC
Confidence            64322 1110     11235688887776  444444       33222221100000    0 12235554 4455665


Q ss_pred             EEEEEecCCeEEEEecCCCCccceEEecC---------CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          389 YFLASSMDGTVKLYDHRLTTRGAVQSYEG---------HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       389 ~l~s~s~dg~i~lwd~~~~~~~~~~~~~~---------h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                       |-.|+.++-|..||..   .+....+..         ..+.|..  +..+++|+.|..|+.++-|..||..+++...-.
T Consensus       370 -lWiGt~~~Gl~~~~~~---~~~~~~~~~~~~~~~~~l~~~~v~~--i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~  443 (795)
T 4a2l_A          370 -LWIGTNDGGLNLYNPI---TQRFTSYTLQEDESARGIGSNNIKA--VYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN  443 (795)
T ss_dssp             -EEEEESSSCEEEECTT---TCCEEEECCC------CCSCSCEEE--EEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred             -EEEEECCCCeEEEcCC---CCcEEEEecCCCCcccCCCCccEEE--EEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence             5557878789999974   333333321         1234444  777788885677788778999999888754432


Q ss_pred             c----CCCCCeEEEEEcCCCceEEeeCCCee
Q 037288          460 K----FSNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       460 ~----~~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      .    .....|.++...+++.+.++...++.
T Consensus       444 ~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~  474 (795)
T 4a2l_A          444 QRNSQLVNENVYAILPDGEGNLWLGTLSALV  474 (795)
T ss_dssp             TTTSCCSCSCEEEEEECSSSCEEEEESSCEE
T ss_pred             cCCCCcCCCeeEEEEECCCCCEEEEecCcee
Confidence            2    12456899998888665555545544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.78  E-value=0.0015  Score=69.34  Aligned_cols=56  Identities=23%  Similarity=0.175  Sum_probs=41.9

Q ss_pred             CCeEEEEECCCCcEEEEeeeCCC---------------------------------eEEEEEecCCcEEEEEeCCC----
Q 037288          276 NLGAAMVDMETGMASWVCRSKSD---------------------------------ILAQQVIHSGNVVLCGFRNG----  318 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~~~~~~~~~---------------------------------V~~l~~~~~~~~l~sg~~dg----  318 (513)
                      ++.|+.+|..+|+.++.+.....                                 ...++++|++.+|+.++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            46699999999999988763211                                 13578889999999887765    


Q ss_pred             ---------------eEEEEECCCCccc
Q 037288          319 ---------------AIVTVDVRKRQRG  331 (513)
Q Consensus       319 ---------------~i~iwd~~~~~~~  331 (513)
                                     .|..+|.++++..
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~  296 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYK  296 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEE
Confidence                           4888888877654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.74  E-value=0.0045  Score=58.91  Aligned_cols=182  Identities=12%  Similarity=0.068  Sum_probs=107.1

Q ss_pred             CcEEEEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEEee-----eCCCeEEEEEec-CCcEEEEEeC-------------
Q 037288          257 CTVWTADFCT-NPSQAVIGTNLGAAMVDMETGMASWVCR-----SKSDILAQQVIH-SGNVVLCGFR-------------  316 (513)
Q Consensus       257 ~~V~~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~~~-----~~~~V~~l~~~~-~~~~l~sg~~-------------  316 (513)
                      ..+..+++.+ +++++++....++..+|..++....+..     .......+++.+ +|++.++-..             
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            3578899997 7777666566668888887664322221     112367889999 8876665432             


Q ss_pred             ----CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE
Q 037288          317 ----NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA  392 (513)
Q Consensus       317 ----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  392 (513)
                          ++.|..+|..+++...    +.                              ..+.   .... ++++++++.|.+
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~----~~------------------------------~~~~---~p~g-ia~~~dg~~lyv  201 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTL----LL------------------------------KELH---VPGG-AEVSADSSFVLV  201 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEE----EE------------------------------EEES---CCCE-EEECTTSSEEEE
T ss_pred             ccCCCceEEEEeCCCCEEEE----ec------------------------------cCCc---cCcc-eEECCCCCEEEE
Confidence                3567777765443211    00                              0000   1111 467889886655


Q ss_pred             E-ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecC
Q 037288          393 S-SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE----------DCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       393 ~-s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~----------Dg~v~vwd~~~~~~~~~~~~  461 (513)
                      + +.++.|.+||+..........+....+ ...  ++++++|++.++...          .+.|..+|. .++.+..+..
T Consensus       202 ~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g--i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~  277 (322)
T 2fp8_A          202 AEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN--IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPL  277 (322)
T ss_dssp             EEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE--EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred             EeCCCCeEEEEECCCCcCCccceEEeCCC-CCC--eEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence            5 556899999986211122222221122 233  788999987666544          467888986 5777777654


Q ss_pred             CC----CCeEEEEEcCCCceEEee
Q 037288          462 SN----SVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       462 ~~----~~v~~v~~~p~~~~~~t~  481 (513)
                      ..    ..++.+++. ++.+++++
T Consensus       278 ~~g~~~~~~~~~~~~-~g~L~v~~  300 (322)
T 2fp8_A          278 PPPFAGEHFEQIQEH-DGLLYIGT  300 (322)
T ss_dssp             CTTTTTSCCCEEEEE-TTEEEEEC
T ss_pred             CCCCccccceEEEEe-CCEEEEee
Confidence            32    346677774 45555554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.73  E-value=0.0087  Score=58.17  Aligned_cols=203  Identities=10%  Similarity=0.036  Sum_probs=108.5

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeC----------CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSK----------SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~----------~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  336 (513)
                      ++.+++...++.|..+|..+|+.++.....          ..+.+. ...++..|+.++.++.|..+|..+++... ...
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW-QTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE-EEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE-EEe
Confidence            344444445667999999999998877642          223222 22345677888899999999999887543 111


Q ss_pred             cccc--CcCeEEEeeCCeEEEeE-------eecccCcccceeEeecCCCce-----EEEEEcCCCCEEEEEecCCeEEEE
Q 037288          337 GRRH--RIPYSRLQRNDRVTNEQ-------WFELKANIWPSHTTFMPSSIS-----CLQSLQLYDQYFLASSMDGTVKLY  402 (513)
Q Consensus       337 ~~~h--~~~v~~v~~~~~~~s~~-------w~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~s~s~dg~i~lw  402 (513)
                      +...  ..++  + ....++.++       ++..+++..-...  ......     .....  .+..+++++.++.|..+
T Consensus       131 ~~~~~~~~p~--~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          131 VAGEALSRPV--V-SDGLVLIHTSNGQLQALNEADGAVKWTVN--LDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             CSSCCCSCCE--E-ETTEEEEECTTSEEEEEETTTCCEEEEEE--CCC-----CCCCCCEE--ETTEEEECCTTTEEEEE
T ss_pred             CCCceEcCCE--E-ECCEEEEEcCCCeEEEEECCCCcEEEEEe--CCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEE
Confidence            1111  1111  0 011333332       4444444321111  111110     00111  14567778889999999


Q ss_pred             ecCCCCccceEEecCCCC--c--------eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288          403 DHRLTTRGAVQSYEGHVN--S--------HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR  472 (513)
Q Consensus       403 d~~~~~~~~~~~~~~h~~--~--------v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~  472 (513)
                      |..  ....+..+.....  .        +... ..+  .+..++.++.++.|..+|..+++.+.....  .....+...
T Consensus       204 d~~--tG~~~w~~~~~~~~~~~~~~~~~~~~~~-p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~  276 (376)
T 3q7m_A          204 LME--QGQMIWQQRISQATGSTEIDRLSDVDTT-PVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD  276 (376)
T ss_dssp             ETT--TCCEEEEEECCC-----------CCCCC-CEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE
T ss_pred             ECC--CCcEEEEEecccCCCCcccccccccCCC-cEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE
Confidence            986  3334433332110  0        0000 011  256788888999999999999998877543  224455554


Q ss_pred             CCCceEEeeCCCe
Q 037288          473 TQRSMGPQIEGKI  485 (513)
Q Consensus       473 p~~~~~~t~~~~~  485 (513)
                      .+..++++.++.+
T Consensus       277 ~~~l~~~~~~g~l  289 (376)
T 3q7m_A          277 GNRIYLVDQNDRV  289 (376)
T ss_dssp             TTEEEEEETTCCE
T ss_pred             CCEEEEEcCCCeE
Confidence            3334444433333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.70  E-value=0.013  Score=53.95  Aligned_cols=173  Identities=8%  Similarity=-0.021  Sum_probs=97.4

Q ss_pred             CEEEEEeCCeEEEEECCCCcE-----EEEee-eCCCeEEEEEecCCcEE-EEEeCCCeEEEEECCCCccccccccccccC
Q 037288          269 SQAVIGTNLGAAMVDMETGMA-----SWVCR-SKSDILAQQVIHSGNVV-LCGFRNGAIVTVDVRKRQRGCSSRAGRRHR  341 (513)
Q Consensus       269 ~~l~s~s~~~i~vwd~~~~~~-----~~~~~-~~~~V~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~  341 (513)
                      .+|..+..+.|+.+++.....     ...+. ....+..++|++++..| ++-..++.|..+|+.......   .+....
T Consensus         2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~   78 (267)
T 1npe_A            2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDL   78 (267)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTC
T ss_pred             cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCC
Confidence            445555555688888775432     11222 22347899999976544 454557899999987553211   000000


Q ss_pred             cCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEE-EEEecCCeEEEEecCCCCccceEEe-cCCC
Q 037288          342 IPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYF-LASSMDGTVKLYDHRLTTRGAVQSY-EGHV  419 (513)
Q Consensus       342 ~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~  419 (513)
                                                       ..... +++++++..| ++-...+.|.++|+.   ......+ ....
T Consensus        79 ---------------------------------~~p~~-ia~d~~~~~lyv~d~~~~~I~~~~~~---g~~~~~~~~~~~  121 (267)
T 1npe_A           79 ---------------------------------GSPEG-IALDHLGRTIFWTDSQLDRIEVAKMD---GTQRRVLFDTGL  121 (267)
T ss_dssp             ---------------------------------CCEEE-EEEETTTTEEEEEETTTTEEEEEETT---SCSCEEEECSSC
T ss_pred             ---------------------------------CCccE-EEEEecCCeEEEEECCCCEEEEEEcC---CCCEEEEEECCC
Confidence                                             11222 3566655444 444557889999985   2222222 2111


Q ss_pred             CceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          420 NSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      ...  ..++++|++..|+.+..   .+.|..+++.... ...+ .........++++++ +.++++....
T Consensus       122 ~~P--~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          122 VNP--RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             SSE--EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCc--cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            222  34889997666665554   3688888876433 2222 222345889999996 5666666543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.69  E-value=0.0023  Score=58.87  Aligned_cols=151  Identities=7%  Similarity=-0.000  Sum_probs=94.6

Q ss_pred             EEEEeeeCCC--eEEEEEecCCcEEEEEeC--CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCc
Q 037288          289 ASWVCRSKSD--ILAQQVIHSGNVVLCGFR--NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKAN  364 (513)
Q Consensus       289 ~~~~~~~~~~--V~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~  364 (513)
                      .+..+.|...  ...++|++++.++++.+.  ++.|.++|+.+++... ...+..+                        
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~-~i~l~~~------------------------   65 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN-IHKMDDS------------------------   65 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE-EEECCTT------------------------
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE-EEecCCC------------------------
Confidence            4555666643  589999998765555543  6899999999887533 0001110                        


Q ss_pred             ccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          365 IWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       365 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                                ..... ..+. .++.+++.-.++.+.++|..  ....+.++......  .  +.+++||+.|+.+..++.
T Consensus        66 ----------~fgeG-i~~~-g~~lyv~t~~~~~v~viD~~--t~~v~~~i~~g~~~--g--~glt~Dg~~l~vs~gs~~  127 (266)
T 2iwa_A           66 ----------YFGEG-LTLL-NEKLYQVVWLKNIGFIYDRR--TLSNIKNFTHQMKD--G--WGLATDGKILYGSDGTSI  127 (266)
T ss_dssp             ----------CCEEE-EEEE-TTEEEEEETTCSEEEEEETT--TTEEEEEEECCSSS--C--CEEEECSSSEEEECSSSE
T ss_pred             ----------cceEE-EEEe-CCEEEEEEecCCEEEEEECC--CCcEEEEEECCCCC--e--EEEEECCCEEEEECCCCe
Confidence                      00011 1222 23444455568999999986  44566777532111  2  334567877777777899


Q ss_pred             EEEEeCCCCeEEEEecCCC-----CCeEEEEEcCCCceEEeeCC
Q 037288          445 LRIWSIRSGELVFEDKFSN-----SVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       445 v~vwd~~~~~~~~~~~~~~-----~~v~~v~~~p~~~~~~t~~~  483 (513)
                      |.++|..+.+.+..+....     ..++.+.|. ++.++++...
T Consensus       128 l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A          128 LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            9999999999888865321     136788888 6677777643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.67  E-value=0.045  Score=59.11  Aligned_cols=219  Identities=7%  Similarity=-0.049  Sum_probs=132.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee---------eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR---------SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~---------~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...|.++...++|.+.+...++++..||..+++......         ....|.++...++|++|..|+.++-|..+|..
T Consensus       356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred             CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence            357999999999887765556689999998876544331         12458999988888867778887889999988


Q ss_pred             CCcccccccccc--ccCcCeEEEeeCC--eEEEeE------eecccCcccceeEe----e-cCCCceEEEEEcCCCCEEE
Q 037288          327 KRQRGCSSRAGR--RHRIPYSRLQRND--RVTNEQ------WFELKANIWPSHTT----F-MPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       327 ~~~~~~~~~~~~--~h~~~v~~v~~~~--~~~s~~------w~~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~  391 (513)
                      +++... +....  -+...|.++...+  .+..++      |+...+........    . ....+.++ ...+++.+.+
T Consensus       436 ~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~d~~g~lWi  513 (795)
T 4a2l_A          436 SGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTL-FRDSHKRLWI  513 (795)
T ss_dssp             TCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEE-EECTTCCEEE
T ss_pred             CCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEE-EECCCCCEEE
Confidence            765322 11100  2345688887765  444443      44333322111100    0 11345554 4566676555


Q ss_pred             EEecCCeEEEEecCCCCccceEEec-------CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC---
Q 037288          392 ASSMDGTVKLYDHRLTTRGAVQSYE-------GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF---  461 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~~~~~~~~~~-------~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~---  461 (513)
                       |+. +-+..||..   .... .+.       ...+.+.  ++..+++|.+.++. .+ -|..||..+++...-...   
T Consensus       514 -gt~-~Gl~~~~~~---~~~~-~~~~~~~~~~l~~~~i~--~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~gl  583 (795)
T 4a2l_A          514 -GGE-EGLSVFKQE---GLDI-QKASILPVSNVTKLFTN--CIYEASNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTNGL  583 (795)
T ss_dssp             -EES-SCEEEEEEE---TTEE-EECCCSCSCGGGGSCEE--EEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECGGGTC
T ss_pred             -EeC-CceEEEeCC---CCeE-EEecCCCCCCCCCCeeE--EEEECCCCCEEEEe-CC-CceeECCCCCcEEEeCCCCCC
Confidence             444 458888874   2222 332       1123343  37778888855544 34 588999887765432111   


Q ss_pred             CCCCeEEEEEcCCCceEEeeCCCee
Q 037288          462 SNSVPSAVCWRTQRSMGPQIEGKIH  486 (513)
Q Consensus       462 ~~~~v~~v~~~p~~~~~~t~~~~~~  486 (513)
                      ....|.++...+++.+.+++..++.
T Consensus       584 ~~~~i~~i~~d~~g~lWi~t~~Gl~  608 (795)
T 4a2l_A          584 PNNVVYGILEDSFGRLWLSTNRGIS  608 (795)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTEEE
T ss_pred             chhheEEEEECCCCCEEEEcCCceE
Confidence            2345888999888777776666655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.59  E-value=0.0026  Score=68.44  Aligned_cols=157  Identities=9%  Similarity=-0.050  Sum_probs=87.9

Q ss_pred             cEEEEEEc-CCCCEEEEEeC----C--eEEEEECCCC-cEEEEeeeCCCeEEEEEecCCcEEEEEeCC-----CeEEEEE
Q 037288          258 TVWTADFC-TNPSQAVIGTN----L--GAAMVDMETG-MASWVCRSKSDILAQQVIHSGNVVLCGFRN-----GAIVTVD  324 (513)
Q Consensus       258 ~V~~~~~s-~~g~~l~s~s~----~--~i~vwd~~~~-~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d-----g~i~iwd  324 (513)
                      .+...+|| |||++||.+.+    +  +|+++|+.++ +.+.. .-......+.|+|||+.|+....|     ..|+.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            67889999 99999986532    1  3999999998 62110 001113568899999777666655     3677788


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec---CCeEEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM---DGTVKL  401 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~l  401 (513)
                      +.++.... ...+..                                . ......-..++++|++|+..+.   ...|.+
T Consensus       254 lgt~~~~~-~lv~~~--------------------------------~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~  299 (751)
T 2xe4_A          254 MGKLQSED-VCLYEE--------------------------------H-NPLFSAFMYKAADTNTLCIGSQSPETAEVHL  299 (751)
T ss_dssp             TTSCGGGC-EEEEEC--------------------------------C-CTTCEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred             CCCCchhc-EEEEec--------------------------------C-CCceEEEEEECCCCCEEEEEecCCCCceEEE
Confidence            76654211 000000                                0 0111112468899998887663   346888


Q ss_pred             EecCCCCccce--EEecC-CCCceeEEEEEEcCCCCEEEEEeCC----CcEEEEeCCC
Q 037288          402 YDHRLTTRGAV--QSYEG-HVNSHTRIQLGVDQSERFVMSGGED----CKLRIWSIRS  452 (513)
Q Consensus       402 wd~~~~~~~~~--~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~D----g~v~vwd~~~  452 (513)
                      +|+.... ...  ..+.. .......  ..|+..+.+++....+    ..|..+++.+
T Consensus       300 ~d~~~~~-~~~~~~~l~~~~~~~~~s--~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          300 LDLRKGN-AHNTLEIVRPREKGVRYD--VQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EESSSCT-TCCCEEESSCCCTTCCEE--EEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EECCCCC-CCceeEEeecCCCCceEE--EeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            8886211 122  44432 2333222  4444334444444443    3677777765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.51  E-value=0.039  Score=52.27  Aligned_cols=172  Identities=8%  Similarity=0.042  Sum_probs=100.1

Q ss_pred             EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCC---ccccccccccccCcCeE
Q 037288          270 QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKR---QRGCSSRAGRRHRIPYS  345 (513)
Q Consensus       270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~h~~~v~  345 (513)
                      +|..+....|+..|+.+.....+...-....+++|++++. ++.+-..++.|..+|+...   ....  ..+...     
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~-----   75 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRD-----   75 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSS-----
T ss_pred             EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCC-----
Confidence            4556666679999998877666666556789999998765 4445555789999998752   1100  000000     


Q ss_pred             EEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEEe-cCCCCcee
Q 037288          346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSY-EGHVNSHT  423 (513)
Q Consensus       346 ~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~~~v~  423 (513)
                                                  -..... +++.+ .++++++-..++.|.++|+.   ......+ ....... 
T Consensus        76 ----------------------------~~~p~g-lavd~~~~~ly~~d~~~~~I~~~~~~---g~~~~~~~~~~~~~P-  122 (316)
T 1ijq_A           76 ----------------------------IQAPDG-LAVDWIHSNIYWTDSVLGTVSVADTK---GVKRKTLFRENGSKP-  122 (316)
T ss_dssp             ----------------------------CSCCCE-EEEETTTTEEEEEETTTTEEEEEETT---SSSEEEEEECTTCCE-
T ss_pred             ----------------------------CCCcCE-EEEeecCCeEEEEECCCCEEEEEeCC---CCceEEEEECCCCCc-
Confidence                                        011122 24454 44455555667899999985   2222222 2122222 


Q ss_pred             EEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCC-CceEEeeCC
Q 037288          424 RIQLGVDQSERFVMSGGED--CKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQ-RSMGPQIEG  483 (513)
Q Consensus       424 ~~~~~~s~~g~~l~sg~~D--g~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~-~~~~~t~~~  483 (513)
                       ..++++|.+..|+.+...  +.|...++.... ...+ ...-...+.++++++ +.++.+...
T Consensus       123 -~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          123 -RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             -EEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             -ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECC
Confidence             347889977766655543  688888875433 3332 233456889999986 666666554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.51  E-value=0.0089  Score=63.22  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             EEEEcCCCCEEEEEeCC--------------------eEEEEECCCCcEEEEeeeC----------CCeEEEEEecCCc-
Q 037288          261 TADFCTNPSQAVIGTNL--------------------GAAMVDMETGMASWVCRSK----------SDILAQQVIHSGN-  309 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~--------------------~i~vwd~~~~~~~~~~~~~----------~~V~~l~~~~~~~-  309 (513)
                      .+++.++..++..++.+                    .|..+|..+|+.++.++..          .+.....+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            46788877777766432                    3889999999999988732          2333334445775 


Q ss_pred             --EEEEEeCCCeEEEEECCCCccc
Q 037288          310 --VVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       310 --~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                        .|+.++.+|.++++|..+++..
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCEe
Confidence              7899999999999999998764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.50  E-value=0.017  Score=54.86  Aligned_cols=186  Identities=5%  Similarity=-0.117  Sum_probs=103.3

Q ss_pred             cEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee-e-------------------CCCeEEEEEec-CCcEEEEEe
Q 037288          258 TVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR-S-------------------KSDILAQQVIH-SGNVVLCGF  315 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~-------------------~~~V~~l~~~~-~~~~l~sg~  315 (513)
                      ...++++.++|.++.++ .++.|..||..++....... .                   ...+..+++.+ +++++ .+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEE
Confidence            45678888999855555 45679999988765433221 0                   12478999997 66544 444


Q ss_pred             CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEe
Q 037288          316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASS  394 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s  394 (513)
                      ..+.|..+|...+....    +......                         ..   ...... +.+.+ +|+++++-.
T Consensus        99 ~~~~i~~~d~~~g~~~~----~~~~~~~-------------------------~~---~~~p~~-i~~d~~~G~l~v~d~  145 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQ----LATSVDG-------------------------VP---FKWLYA-VTVDQRTGIVYFTDV  145 (322)
T ss_dssp             TTTEEEEECTTCEECEE----EESEETT-------------------------EE---CSCEEE-EEECTTTCCEEEEES
T ss_pred             CCCCEEEEeCCCCEEEE----ecccCCC-------------------------Cc---ccccce-EEEecCCCEEEEECC
Confidence            45558888876443211    1000000                         00   001122 35677 777666543


Q ss_pred             c-----------------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCe--
Q 037288          395 M-----------------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGE--  454 (513)
Q Consensus       395 ~-----------------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~--  454 (513)
                      .                 ++.|..||..   .+.+..+.........  ++++++|++|+.+ ..++.|.+|++....  
T Consensus       146 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~---~~~~~~~~~~~~~p~g--ia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~  220 (322)
T 2fp8_A          146 STLYDDRGVQQIMDTSDKTGRLIKYDPS---TKETTLLLKELHVPGG--AEVSADSSFVLVAEFLSHQIVKYWLEGPKKG  220 (322)
T ss_dssp             CSSCCTTCHHHHHHHTCCCEEEEEEETT---TTEEEEEEEEESCCCE--EEECTTSSEEEEEEGGGTEEEEEESSSTTTT
T ss_pred             cccccccccceehcccCCCceEEEEeCC---CCEEEEeccCCccCcc--eEECCCCCEEEEEeCCCCeEEEEECCCCcCC
Confidence            2                 3668888864   2222222111111123  7899999866555 556899999987521  


Q ss_pred             EEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          455 LVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       455 ~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      ....+....+ ...+++.+++.++++...
T Consensus       221 ~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          221 TAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             CEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             ccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            1111111223 788999999766666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.50  E-value=0.0077  Score=62.52  Aligned_cols=78  Identities=14%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe-EEEEEcCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP-SAVCWRTQ  474 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v-~~v~~~p~  474 (513)
                      +|.|..||+.  ..+.+-+...+. ....-.+.  ..+..++.|+.||.++.||.++|+++..++...... .-+.|..+
T Consensus       465 ~G~l~A~D~~--tG~~~W~~~~~~-~~~~g~~~--tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~  539 (582)
T 1flg_A          465 VGSLRAMDPV--SGKVVWEHKEHL-PLWAGVLA--TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             SEEEEEECTT--TCCEEEEEEESS-CCCSCCEE--ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cceEEEEECC--CCCEEEEecCCC-CCcccceE--eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence            6789999986  333333333221 11110122  236788889999999999999999999887643322 22666666


Q ss_pred             CceE
Q 037288          475 RSMG  478 (513)
Q Consensus       475 ~~~~  478 (513)
                      +..+
T Consensus       540 G~qY  543 (582)
T 1flg_A          540 GEQY  543 (582)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            5433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.50  E-value=0.0064  Score=55.41  Aligned_cols=146  Identities=12%  Similarity=0.038  Sum_probs=91.5

Q ss_pred             EEEEeeeCCC--eEEEEEecCCcEEEEEeCCC--eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCc
Q 037288          289 ASWVCRSKSD--ILAQQVIHSGNVVLCGFRNG--AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKAN  364 (513)
Q Consensus       289 ~~~~~~~~~~--V~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~  364 (513)
                      .+..+.|...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++...   .                            
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~---~----------------------------   80 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ---Q----------------------------   80 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE---E----------------------------
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE---E----------------------------
Confidence            4555666554  5889998 777777777776  99999999987533   1                            


Q ss_pred             ccceeEeecCCCc--eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC
Q 037288          365 IWPSHTTFMPSSI--SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED  442 (513)
Q Consensus       365 ~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D  442 (513)
                            +..+...  ..+ ... .++.++..-.++.+.+||..  +...+.++.....   .+.++  ++++.|+.+..+
T Consensus        81 ------~~l~~~~FgeGi-t~~-g~~ly~ltw~~~~v~v~D~~--t~~~~~ti~~~~e---G~glt--~dg~~L~~SdGs  145 (262)
T 3nol_A           81 ------IELGKRYFGEGI-SDW-KDKIVGLTWKNGLGFVWNIR--NLRQVRSFNYDGE---GWGLT--HNDQYLIMSDGT  145 (262)
T ss_dssp             ------EECCTTCCEEEE-EEE-TTEEEEEESSSSEEEEEETT--TCCEEEEEECSSC---CCCEE--ECSSCEEECCSS
T ss_pred             ------EecCCccceeEE-EEe-CCEEEEEEeeCCEEEEEECc--cCcEEEEEECCCC---ceEEe--cCCCEEEEECCC
Confidence                  1111111  111 121 23334444458899999997  5557777764322   22244  567777666667


Q ss_pred             CcEEEEeCCCCeEEEEecCC--C---CCeEEEEEcCCCceEEeeC
Q 037288          443 CKLRIWSIRSGELVFEDKFS--N---SVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       443 g~v~vwd~~~~~~~~~~~~~--~---~~v~~v~~~p~~~~~~t~~  482 (513)
                      +.|.++|..+.+.+..+...  .   ..++.+.|. ++.+++..-
T Consensus       146 ~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w  189 (262)
T 3nol_A          146 PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW  189 (262)
T ss_dssp             SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence            88999999999988886542  1   224567776 556666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.50  E-value=0.076  Score=51.08  Aligned_cols=183  Identities=7%  Similarity=-0.008  Sum_probs=106.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCCeEEEEECCCCccccccccc
Q 037288          259 VWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       259 V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      ..|.+..++ .+|..+....|+..++..............+..++|++.+..|+ +-...+.|..+++.......   .+
T Consensus        36 ~~C~~~~~~-~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~---~~  111 (349)
T 3v64_C           36 RSCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE---VV  111 (349)
T ss_dssp             SCEEESSSC-CEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EE
T ss_pred             CcccccccC-ceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE---EE
Confidence            345555553 45555555668888888766655555556689999997665554 44567889999987654211   00


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEE-e
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQS-Y  415 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~-~  415 (513)
                      ....                                 ..... +++.+ .++++++-...+.|.+.++.   ...... +
T Consensus       112 ~~~~---------------------------------~~p~g-lavd~~~g~ly~~d~~~~~I~~~~~d---G~~~~~l~  154 (349)
T 3v64_C          112 STGL---------------------------------ESPGG-LAVDWVHDKLYWTDSGTSRIEVANLD---GAHRKVLL  154 (349)
T ss_dssp             CSSC---------------------------------SCCCE-EEEETTTTEEEEEETTTTEEEEEETT---SCSCEEEE
T ss_pred             eCCC---------------------------------CCccE-EEEecCCCeEEEEcCCCCeEEEEcCC---CCceEEEE
Confidence            0000                                 01112 24454 34455555567889999985   222222 2


Q ss_pred             cCCCCceeEEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          416 EGHVNSHTRIQLGVDQSERFVMSGG-ED-CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       416 ~~h~~~v~~~~~~~s~~g~~l~sg~-~D-g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      .......  ..++++|.+..|+... .+ +.|...++................+.++++|+ +.++.+....
T Consensus       155 ~~~l~~P--~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          155 WQSLEKP--RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             CTTCSCE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             eCCCCCc--ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence            2222222  3378898766665544 34 78888887654333222333455899999975 6666666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.50  E-value=0.0084  Score=62.10  Aligned_cols=80  Identities=13%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQ  474 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~  474 (513)
                      +|.|..||+.  ..+.+-++.... .+..  ..+...+..++.++.||.|+.||.++|+++..+...... -.-+.+..+
T Consensus       443 ~g~l~a~D~~--tG~~~W~~~~~~-~~~~--~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~  517 (571)
T 2ad6_A          443 MGQIRAFDLT--TGKAKWTKWEKF-AAWG--GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK  517 (571)
T ss_dssp             CEEEEEECTT--TCCEEEEEEESS-CCCS--BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCeEEEEECC--CCCEEEEecCCC-Cccc--eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEEC
Confidence            5788889986  333444443211 1111  111224667888999999999999999999987654322 122345556


Q ss_pred             CceEEe
Q 037288          475 RSMGPQ  480 (513)
Q Consensus       475 ~~~~~t  480 (513)
                      +.+++.
T Consensus       518 G~~yv~  523 (571)
T 2ad6_A          518 GKQYIG  523 (571)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            544443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.43  E-value=0.011  Score=54.01  Aligned_cols=146  Identities=7%  Similarity=-0.055  Sum_probs=93.4

Q ss_pred             EEEEeeeCCC--eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccc
Q 037288          289 ASWVCRSKSD--ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIW  366 (513)
Q Consensus       289 ~~~~~~~~~~--V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~  366 (513)
                      .+..+.|...  ...+.|+ ++.+..+.+.+|.|+++|+.+++....+  +...   ..                     
T Consensus        45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~---~F---------------------   97 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN---IF---------------------   97 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT---CC---------------------
T ss_pred             EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC---cc---------------------
Confidence            4455555544  5788887 4677888888999999999998764411  1110   00                     


Q ss_pred             ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288          367 PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR  446 (513)
Q Consensus       367 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~  446 (513)
                                ...+ .+. .++.++..-.++.+.+||..  +...+.++...... ..  ++  ++++.|+.+..++.|.
T Consensus        98 ----------geGi-t~~-g~~Ly~ltw~~~~v~V~D~~--Tl~~~~ti~~~~eG-wG--Lt--~Dg~~L~vSdGs~~l~  158 (268)
T 3nok_A           98 ----------AEGL-ASD-GERLYQLTWTEGLLFTWSGM--PPQRERTTRYSGEG-WG--LC--YWNGKLVRSDGGTMLT  158 (268)
T ss_dssp             ----------EEEE-EEC-SSCEEEEESSSCEEEEEETT--TTEEEEEEECSSCC-CC--EE--EETTEEEEECSSSEEE
T ss_pred             ----------eeEE-EEe-CCEEEEEEccCCEEEEEECC--cCcEEEEEeCCCce-eE--Ee--cCCCEEEEECCCCEEE
Confidence                      0111 222 34445555568999999996  45577777642222 22  44  5688888777799999


Q ss_pred             EEeCCCCeEEEEecCCC-----CCeEEEEEcCCCceEEee
Q 037288          447 IWSIRSGELVFEDKFSN-----SVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       447 vwd~~~~~~~~~~~~~~-----~~v~~v~~~p~~~~~~t~  481 (513)
                      ++|..+.+.+..+....     ..++.+.|. ++.+++..
T Consensus       159 ~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          159 FHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             EECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            99999999888865421     235667777 55666666

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.42  E-value=0.069  Score=52.17  Aligned_cols=181  Identities=7%  Similarity=-0.014  Sum_probs=105.4

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCccccccccccc
Q 037288          261 TADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSRAGRR  339 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  339 (513)
                      |.+..+ ..+|..+....|+.+++.......+......+..++|++.+. ++.+-...+.|..+++.......   .+..
T Consensus        81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~---~~~~  156 (386)
T 3v65_B           81 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE---VVST  156 (386)
T ss_dssp             EEECSS-CCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE---EECS
T ss_pred             ECCccc-cceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE---EEeC
Confidence            444444 345555556678889988776655555556689999997654 44454567889999987654211   0000


Q ss_pred             cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-CCEEEEEecCCeEEEEecCCCCccceEE-ecC
Q 037288          340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRGAVQS-YEG  417 (513)
Q Consensus       340 h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~~~~~~~~~~-~~~  417 (513)
                      ..                                 ..... +++.+. +.++++-...+.|.+.++.   ...... +..
T Consensus       157 ~~---------------------------------~~p~g-lavd~~~g~lY~~d~~~~~I~~~~~d---g~~~~~l~~~  199 (386)
T 3v65_B          157 GL---------------------------------ESPGG-LAVDWVHDKLYWTDSGTSRIEVANLD---GAHRKVLLWQ  199 (386)
T ss_dssp             SC---------------------------------SCCCC-EEEETTTTEEEEEETTTTEEEECBTT---SCSCEEEECS
T ss_pred             CC---------------------------------CCccE-EEEEeCCCeEEEEcCCCCeEEEEeCC---CCceEEeecC
Confidence            00                                 01111 244543 4455555567788888874   222222 222


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGGE-D-CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~~-D-g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      .....  ..++++|.+..|+.... + +.|...++................+.++++|+ +.++.+....
T Consensus       200 ~l~~P--~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          200 SLEKP--RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             SCSCE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             CCCCC--cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence            22222  33788887776665543 3 67888887654433333333455889999975 6666665443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.41  E-value=0.014  Score=52.62  Aligned_cols=145  Identities=9%  Similarity=0.019  Sum_probs=90.1

Q ss_pred             EEEEeeeCCC--eEEEEEecCCcEEEEEeCC--CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCc
Q 037288          289 ASWVCRSKSD--ILAQQVIHSGNVVLCGFRN--GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKAN  364 (513)
Q Consensus       289 ~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~  364 (513)
                      .+..+.|...  +..+.|+. +.++.+.+.+  +.|+.+|+.+++...   .                            
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~---~----------------------------   58 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQ---R----------------------------   58 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEE---E----------------------------
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEE---E----------------------------
Confidence            4556666654  67999986 6666666665  499999999887533   1                            


Q ss_pred             ccceeEeecCCCc--eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC
Q 037288          365 IWPSHTTFMPSSI--SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED  442 (513)
Q Consensus       365 ~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D  442 (513)
                            +..+...  ..+ .+. .++.++..-.++.+.+||..  +...+.++.....   .+.++  ++++.|+.+..+
T Consensus        59 ------~~l~~~~fgeGi-~~~-~~~ly~ltw~~~~v~v~D~~--tl~~~~ti~~~~~---Gwglt--~dg~~L~vSdgs  123 (243)
T 3mbr_X           59 ------AEVPPPYFGAGI-VAW-RDRLIQLTWRNHEGFVYDLA--TLTPRARFRYPGE---GWALT--SDDSHLYMSDGT  123 (243)
T ss_dssp             ------EECCTTCCEEEE-EEE-TTEEEEEESSSSEEEEEETT--TTEEEEEEECSSC---CCEEE--ECSSCEEEECSS
T ss_pred             ------EeCCCCcceeEE-EEe-CCEEEEEEeeCCEEEEEECC--cCcEEEEEeCCCC---ceEEe--eCCCEEEEECCC
Confidence                  1111111  111 221 34445555568999999986  4557777764322   22244  557666666678


Q ss_pred             CcEEEEeCCCCeEEEEecCCC-----CCeEEEEEcCCCceEEee
Q 037288          443 CKLRIWSIRSGELVFEDKFSN-----SVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       443 g~v~vwd~~~~~~~~~~~~~~-----~~v~~v~~~p~~~~~~t~  481 (513)
                      +.|.++|..+.+.+..+....     ..++.+.|. ++.+++..
T Consensus       124 ~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X          124 AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence            999999999999888865421     235566666 44455554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.38  E-value=0.016  Score=61.55  Aligned_cols=57  Identities=21%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             CCeEEEEECCCCcEEEEeeeC--C-----------------------------C-eEEEEEecCCcEEEEEeCCCe----
Q 037288          276 NLGAAMVDMETGMASWVCRSK--S-----------------------------D-ILAQQVIHSGNVVLCGFRNGA----  319 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~~~~~~~--~-----------------------------~-V~~l~~~~~~~~l~sg~~dg~----  319 (513)
                      ++.|..||..+|+.++.+...  .                             . ...++++|++.+|+.++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            456999999999998877521  0                             0 125788898899999988864    


Q ss_pred             ---------------EEEEECCCCcccc
Q 037288          320 ---------------IVTVDVRKRQRGC  332 (513)
Q Consensus       320 ---------------i~iwd~~~~~~~~  332 (513)
                                     |..+|.++++...
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W  289 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVW  289 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeE
Confidence                           8888988887543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.16  E-value=0.039  Score=57.24  Aligned_cols=54  Identities=20%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             eEEEEECCCCcEEEEeeeCC-----------CeEEEEEe-cCC---cEEEEEeCCCeEEEEECCCCcccc
Q 037288          278 GAAMVDMETGMASWVCRSKS-----------DILAQQVI-HSG---NVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~-----------~V~~l~~~-~~~---~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      .|..+|..+|+.++.++...           ++. +... .+|   .+++.++.+|.++++|.++++...
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence            68999999999999887321           122 2222 467   578889999999999999887643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.15  E-value=0.14  Score=50.18  Aligned_cols=177  Identities=8%  Similarity=0.011  Sum_probs=102.7

Q ss_pred             CEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCccccccccccccCcCeEEE
Q 037288          269 SQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL  347 (513)
Q Consensus       269 ~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v  347 (513)
                      .+|..+....|+..++.......+......+..++|++.+..|+.. ...+.|+.+++...........+...       
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-------  156 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------  156 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-------
T ss_pred             ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-------
Confidence            3666666778999999877666666666778999999866555544 45788988888653210000000000       


Q ss_pred             eeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEEe-cCCCCceeEE
Q 037288          348 QRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSY-EGHVNSHTRI  425 (513)
Q Consensus       348 ~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~~~v~~~  425 (513)
                                               ....... +++.+ .++++++-...+.|.+.|+.   ......+ .......  .
T Consensus       157 -------------------------~~~~p~g-lavD~~~~~lY~~d~~~~~I~~~~~~---g~~~~~l~~~~~~~P--~  205 (400)
T 3p5b_L          157 -------------------------DIQAPDG-LAVDWIHSNIYWTDSVLGTVSVADTK---GVKRKTLFRENGSKP--R  205 (400)
T ss_dssp             -------------------------SCSCEEE-EEEETTTTEEEEEETTTTEEEEECTT---TCSEEEEEECSSCCE--E
T ss_pred             -------------------------CCCCccc-EEEEecCCceEEEECCCCeEEEEeCC---CCceEEEEeCCCCCc--c
Confidence                                     0011122 24554 45555555567889999884   3322222 2222222  3


Q ss_pred             EEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCC
Q 037288          426 QLGVDQSERFVMSGGE--DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEG  483 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~  483 (513)
                      .++++|.+.+|+....  .+.|...++............-...+.+++++. +.++.+...
T Consensus       206 ~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          206 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             EEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence            4888997776665543  478999998655443333333456899999976 666666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.11  E-value=0.38  Score=51.63  Aligned_cols=220  Identities=10%  Similarity=0.024  Sum_probs=123.5

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee---------------eCCCeEEEEEecCCcEEEEEeCCCeE
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR---------------SKSDILAQQVIHSGNVVLCGFRNGAI  320 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~---------------~~~~V~~l~~~~~~~~l~sg~~dg~i  320 (513)
                      ...|.++...++|.+.+....++|.++|..++.......               ....|.++...++|+ |-.|+.++-|
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl  335 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI  335 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence            357999999888876654444789999988775432211               234589998888876 4556667778


Q ss_pred             EEEECCCCcccccccc-------ccccCcCeEEEeeCC--eEEEeE-------eecccCcccceeE-eec-CCCceEEEE
Q 037288          321 VTVDVRKRQRGCSSRA-------GRRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPSHT-TFM-PSSISCLQS  382 (513)
Q Consensus       321 ~iwd~~~~~~~~~~~~-------~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~-~~~-~~~v~~~~~  382 (513)
                      ..++........ +..       -.-....|.++...+  .+..|+       ++...+....... ... ...|.++ .
T Consensus       336 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i-~  413 (781)
T 3v9f_A          336 NFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS-L  413 (781)
T ss_dssp             EEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE-E
T ss_pred             EEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE-E
Confidence            888887654221 110       011235688887765  444443       3322221111000 011 2334444 3


Q ss_pred             EcCCCCEEEEEecCCeEEEEecCCCCccceEEecC---CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          383 LQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG---HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       383 ~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~---h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      ..+++.+ ..|+.++-+..+|..   .+.+..+..   ....|..  +..+++|.+ ..|+. +-|..||..+++.....
T Consensus       414 ~d~~g~l-Wigt~~~Gl~~~~~~---~~~~~~~~~~~~~~~~v~~--i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~  485 (781)
T 3v9f_A          414 KDSEGNL-WFGTYLGNISYYNTR---LKKFQIIELEKNELLDVRV--FYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHY  485 (781)
T ss_dssp             ECTTSCE-EEEETTEEEEEECSS---SCEEEECCSTTTCCCCEEE--EEECTTSEE-EEEET-TEEEEEESSSSSCCEEE
T ss_pred             ECCCCCE-EEEeccCCEEEEcCC---CCcEEEeccCCCCCCeEEE--EEECCCCCE-EEEEC-CceEEEeCCCCeEEecc
Confidence            4445654 447776778889874   333444431   2334444  667777764 44555 55999998877654332


Q ss_pred             cCC-----CCCeEEEEEcCCCceEEeeC-CCee
Q 037288          460 KFS-----NSVPSAVCWRTQRSMGPQIE-GKIH  486 (513)
Q Consensus       460 ~~~-----~~~v~~v~~~p~~~~~~t~~-~~~~  486 (513)
                      ...     ...|.+++..+++.+.++.. .++.
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~  518 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG  518 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred             cCcccccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence            222     35689999888866555443 5554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.11  E-value=0.014  Score=62.79  Aligned_cols=146  Identities=12%  Similarity=0.009  Sum_probs=86.0

Q ss_pred             CeEEEEEe-cCCcEEEEEe-CCC----eEEEEECCCC-ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeE
Q 037288          298 DILAQQVI-HSGNVVLCGF-RNG----AIVTVDVRKR-QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHT  370 (513)
Q Consensus       298 ~V~~l~~~-~~~~~l~sg~-~dg----~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~  370 (513)
                      .+...+|+ |||+.|+-+. .+|    .|+++|+.++ +...      .   .+..+ +                     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~---~~~~~-~---------------------  223 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------D---KVSGT-N---------------------  223 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------C---CEEEE-C---------------------
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------c---cccCc-e---------------------
Confidence            47889999 9998776443 333    5999999887 5211      0   01110 0                     


Q ss_pred             eecCCCceEEEEEcCCCCEEEEEecC-----CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---C
Q 037288          371 TFMPSSISCLQSLQLYDQYFLASSMD-----GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---D  442 (513)
Q Consensus       371 ~~~~~~v~~~~~~~~~~~~l~s~s~d-----g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---D  442 (513)
                             . -..|+|+++.|+....|     ..|.++++..........+...... ....+.|+|||++|+..+.   .
T Consensus       224 -------~-~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~  294 (751)
T 2xe4_A          224 -------G-EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPL-FSAFMYKAADTNTLCIGSQSPET  294 (751)
T ss_dssp             -------S-CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTT-CEEEEEECTTSSEEEEEEECSSC
T ss_pred             -------e-eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCc-eEEEEEECCCCCEEEEEecCCCC
Confidence                   0 03678899888877765     2577788752211123334322222 1244789999998876553   4


Q ss_pred             CcEEEEeCCCC--eE-EEEe-cCCCCCeEEEEEcCCCceEEeeCC
Q 037288          443 CKLRIWSIRSG--EL-VFED-KFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       443 g~v~vwd~~~~--~~-~~~~-~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      ..|+++|+.++  +. +..+ .....+...+.|+.+..++..+..
T Consensus       295 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~  339 (751)
T 2xe4_A          295 AEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNE  339 (751)
T ss_dssp             EEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECT
T ss_pred             ceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCC
Confidence            46888999876  23 1333 333455667776666555554444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.11  E-value=5.8e-05  Score=73.93  Aligned_cols=115  Identities=10%  Similarity=0.099  Sum_probs=57.1

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC
Q 037288          307 SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY  386 (513)
Q Consensus       307 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~  386 (513)
                      ++..|++++.||.|+.||..+++...   .+..  .++                                 .+. .+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~---------------------------------~s~-p~~~~   48 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPV---------------------------------LQV-PTHVE   48 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCS---------------------------------CCC-C----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCc---------------------------------eec-ceEcC
Confidence            57889999999999999999887543   1111  111                                 111 11235


Q ss_pred             CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN  463 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~  463 (513)
                      +..+++++.||.|+.||..  +...+..+..+..........+. ++..|++|+.|+.|+.||..+|+.+..+..+.
T Consensus        49 g~~~v~~s~dg~l~a~d~~--tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~  122 (369)
T 2hz6_A           49 EPAFLPDPNDGSLYTLGSK--NNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF  122 (369)
T ss_dssp             -CCEEECTTTCCEEEC-------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------
T ss_pred             CCEEEEeCCCCEEEEEECC--CCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC
Confidence            6677777899999999985  33344455433211000000111 35578888889999999999999887766543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.06  E-value=0.059  Score=50.82  Aligned_cols=168  Identities=7%  Similarity=-0.007  Sum_probs=98.7

Q ss_pred             CcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCcEEEE-eee-----CC--CeEEEEE---ecCCcEEEEEe--------
Q 037288          257 CTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGMASWV-CRS-----KS--DILAQQV---IHSGNVVLCGF--------  315 (513)
Q Consensus       257 ~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~~~~~-~~~-----~~--~V~~l~~---~~~~~~l~sg~--------  315 (513)
                      ----+++|++... ++++. ..++|..||...+....+ +..     ..  .+..|.|   .|++.++++..        
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3345778887444 44444 477899999986654433 221     11  2589999   68887777644        


Q ss_pred             -----CCCeEEEEECC---CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC
Q 037288          316 -----RNGAIVTVDVR---KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD  387 (513)
Q Consensus       316 -----~dg~i~iwd~~---~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  387 (513)
                           .+..|..+|+.   +++... ...+......+..              ..+.        ....... +...++|
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~-~~dL~~~~~~~~~--------------~~g~--------~~~~~nD-vavD~~G  148 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVW-SVNFEKVQDEFEK--------------KAGK--------RPFGVVQ-SAQDRDG  148 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSE-EEESHHHHHHHHH--------------HHSS--------CCEEEEE-EEECTTS
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEE-EecCccccccccc--------------cccc--------cccCCce-eEECCCC
Confidence                 26789999998   555432 1111111000000              0000        0000111 4677899


Q ss_pred             CEEEEEecC-CeEEEEecCCCCccceEEec-CC-----CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288          388 QYFLASSMD-GTVKLYDHRLTTRGAVQSYE-GH-----VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG  453 (513)
Q Consensus       388 ~~l~s~s~d-g~i~lwd~~~~~~~~~~~~~-~h-----~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~  453 (513)
                      +..++++.. +.|...+..   ...+..+. ..     ....+.  ++++|+|+.|++...+|.|.-+|+.+.
T Consensus       149 naYVt~s~~~~~I~rV~pd---G~~~~~~~~~~~~~~~~~G~nG--Iv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          149 NSYVAFALGMPAIARVSAD---GKTVSTFAWESGNGGQRPGYSG--ITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CEEEEEEESSCEEEEECTT---SCCEEEEEECCCCSSSCCSCSE--EEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CEEEeCCCCCCeEEEEeCC---CCEEeeeeecCCCcccccCcce--EEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            999988888 887777763   22233221 11     111334  788999999888877999999998854

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.04  E-value=0.044  Score=57.78  Aligned_cols=71  Identities=14%  Similarity=-0.007  Sum_probs=48.1

Q ss_pred             EEEEcC-CCCEEEEEeCC------------eEEEEECCCCcEE--EEee--eCCCeEEEEEecCCcEEEEEeC-CCeEEE
Q 037288          261 TADFCT-NPSQAVIGTNL------------GAAMVDMETGMAS--WVCR--SKSDILAQQVIHSGNVVLCGFR-NGAIVT  322 (513)
Q Consensus       261 ~~~~s~-~g~~l~s~s~~------------~i~vwd~~~~~~~--~~~~--~~~~V~~l~~~~~~~~l~sg~~-dg~i~i  322 (513)
                      .+++.+ ++++++.|+.+            .+.+||..+++-.  ....  +.....++++..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456666 88888877521            3788999887622  2222  2222445777889999999984 568999


Q ss_pred             EECCCCccc
Q 037288          323 VDVRKRQRG  331 (513)
Q Consensus       323 wd~~~~~~~  331 (513)
                      ||..+.+..
T Consensus       270 yd~~t~~W~  278 (656)
T 1k3i_A          270 YDSSSDSWI  278 (656)
T ss_dssp             EEGGGTEEE
T ss_pred             ecCcCCcee
Confidence            999876543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.99  E-value=0.3  Score=47.58  Aligned_cols=182  Identities=8%  Similarity=-0.081  Sum_probs=102.0

Q ss_pred             CcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeee-CCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccc
Q 037288          257 CTVWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRS-KSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ..+..++|++.+..|. +- ..+.|..+++..+....+... ......+++.+.+ +++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4578999997555444 44 345688999987765444432 2345778888754 555555567788888876443211


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cC-CeEEEEecCCCCcc
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MD-GTVKLYDHRLTTRG  410 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~d-g~i~lwd~~~~~~~  410 (513)
                         .+.....                                 .... +++.|.+..|..+. .+ +.|..+++.   ..
T Consensus       196 ---l~~~~l~---------------------------------~P~g-iavdp~~g~ly~td~~~~~~I~r~~~d---G~  235 (386)
T 3v65_B          196 ---LLWQSLE---------------------------------KPRA-IALHPMEGTIYWTDWGNTPRIEASSMD---GS  235 (386)
T ss_dssp             ---EECSSCS---------------------------------CEEE-EEEETTTTEEEEEECSSSCEEEEEETT---SC
T ss_pred             ---eecCCCC---------------------------------CCcE-EEEEcCCCeEEEeccCCCCEEEEEeCC---CC
Confidence               0010111                                 1122 34555555444443 34 678888874   22


Q ss_pred             ceEEe-cCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          411 AVQSY-EGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       411 ~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      ....+ .......  ..++++|+++.|+.+ ...+.|..+|+........+........++++..+ .++.+.
T Consensus       236 ~~~~~~~~~~~~P--nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~-~ly~td  305 (386)
T 3v65_B          236 GRRIIADTHLFWP--NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFED-SLYWTD  305 (386)
T ss_dssp             SCEEEECSSCSCE--EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETT-EEEEEE
T ss_pred             CcEEEEECCCCCe--eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECC-EEEEee
Confidence            23233 2222222  338889876666554 45678999998754433333333445678888444 444444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.97  E-value=0.24  Score=53.26  Aligned_cols=185  Identities=11%  Similarity=0.035  Sum_probs=108.7

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee----eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR----SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ..|.++...++|.+.+...++++..+|..++.......    ....|.++...++|++.+ |+.++-+..+|..+++...
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE
Confidence            57999999888887765556789999987654322111    234589998887777554 6676778889887654321


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~  412 (513)
                       +....-....                                 +.++ ...+++. |..|+. +-|..||..  . ...
T Consensus       442 -~~~~~~~~~~---------------------------------v~~i-~~d~~g~-lwigt~-~Gl~~~~~~--~-~~~  481 (781)
T 3v9f_A          442 -IELEKNELLD---------------------------------VRVF-YEDKNKK-IWIGTH-AGVFVIDLA--S-KKV  481 (781)
T ss_dssp             -CCSTTTCCCC---------------------------------EEEE-EECTTSE-EEEEET-TEEEEEESS--S-SSC
T ss_pred             -eccCCCCCCe---------------------------------EEEE-EECCCCC-EEEEEC-CceEEEeCC--C-CeE
Confidence             1000001112                                 2222 3344554 455565 568889875  2 222


Q ss_pred             EEec-CC-----CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC---CCCCeEEEEEcCCCceEEeeCC
Q 037288          413 QSYE-GH-----VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF---SNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       413 ~~~~-~h-----~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      ..+. ..     ...+..  +..+++|.+.+ |+.++-|..||..+++...-...   ....|.++...+++.+.+++..
T Consensus       482 ~~~~~~~~~~~~~~~i~~--i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~  558 (781)
T 3v9f_A          482 IHHYDTSNSQLLENFVRS--IAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGE  558 (781)
T ss_dssp             CEEECTTTSSCSCSCEEE--EEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETT
T ss_pred             EecccCcccccccceeEE--EEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECC
Confidence            2222 11     234444  77788887554 45544588899877764432211   2346889999888766655555


Q ss_pred             Ce
Q 037288          484 KI  485 (513)
Q Consensus       484 ~~  485 (513)
                      ++
T Consensus       559 Gl  560 (781)
T 3v9f_A          559 GL  560 (781)
T ss_dssp             EE
T ss_pred             Cc
Confidence            55

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.90  E-value=0.33  Score=46.56  Aligned_cols=182  Identities=8%  Similarity=-0.080  Sum_probs=103.4

Q ss_pred             CcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeee-CCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccc
Q 037288          257 CTVWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRS-KSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ..+..++|++....|. +- ..+.|..+++..+........ ......+++.+.+ +++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4578999997655544 44 345688899887664444332 2346788898754 555565667899999987543211


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecC-CeEEEEecCCCCcc
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMD-GTVKLYDHRLTTRG  410 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~d-g~i~lwd~~~~~~~  410 (513)
                         .+.....                                 .... ++++|.+. ++.+-..+ +.|..+++.   ..
T Consensus       153 ---l~~~~l~---------------------------------~P~~-iavdp~~g~ly~td~~~~~~I~r~~~d---G~  192 (349)
T 3v64_C          153 ---LLWQSLE---------------------------------KPRA-IALHPMEGTIYWTDWGNTPRIEASSMD---GS  192 (349)
T ss_dssp             ---EECTTCS---------------------------------CEEE-EEEETTTTEEEEEECSSSCEEEEEETT---SC
T ss_pred             ---EEeCCCC---------------------------------Ccce-EEEecCcCeEEEeccCCCCEEEEEeCC---CC
Confidence               0001111                                 1122 35565444 44444444 778888874   33


Q ss_pred             ceEEecC-CCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          411 AVQSYEG-HVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       411 ~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      ....+.. .....  ..++++|+++.|+.+. ..+.|..+|+........+........++++.. +.++.+.
T Consensus       193 ~~~~~~~~~~~~P--nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~-~~ly~td  262 (349)
T 3v64_C          193 GRRIIADTHLFWP--NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFE-DSLYWTD  262 (349)
T ss_dssp             SCEESCCSSCSCE--EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TEEEEEE
T ss_pred             CcEEEEECCCCCc--ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEEC-CEEEEec
Confidence            3333321 11222  3488998776665554 467899999875443333333344567888844 4444444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.83  E-value=0.34  Score=45.74  Aligned_cols=173  Identities=10%  Similarity=0.013  Sum_probs=97.7

Q ss_pred             EEEEEeCCeEEEEECCCCc--EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288          270 QAVIGTNLGAAMVDMETGM--ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR  346 (513)
Q Consensus       270 ~l~s~s~~~i~vwd~~~~~--~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  346 (513)
                      +|..+....|+.+|+....  ..........+.+++|++.+ .++.+-...+.|..+++.......  ..+..       
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~~~~-------   76 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVS-------   76 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EEEEE-------
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EEEcC-------
Confidence            4455555568889988763  22233333457799999865 455555567889999887653211  00000       


Q ss_pred             EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEEe-cCCCCceeE
Q 037288          347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSY-EGHVNSHTR  424 (513)
Q Consensus       347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~~~v~~  424 (513)
                                                .-..... +++.+ .++++++-...+.|.++++.   ......+ .......  
T Consensus        77 --------------------------~l~~p~g-lavd~~~g~ly~~d~~~~~I~~~~~d---G~~~~~l~~~~~~~P--  124 (318)
T 3sov_A           77 --------------------------GLLSPDG-LACDWLGEKLYWTDSETNRIEVSNLD---GSLRKVLFWQELDQP--  124 (318)
T ss_dssp             --------------------------CCSCCCE-EEEETTTTEEEEEETTTTEEEEEETT---SCSCEEEECSSCSSE--
T ss_pred             --------------------------CCCCccE-EEEEcCCCeEEEEECCCCEEEEEECC---CCcEEEEEeCCCCCc--
Confidence                                      0011122 24454 44555555567889999984   3322223 2222222  


Q ss_pred             EEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCC
Q 037288          425 IQLGVDQSERFVMSGGE--DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEG  483 (513)
Q Consensus       425 ~~~~~s~~g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~  483 (513)
                      ..++++|.+.+|+.+..  .+.|...++............-...+.++++|+ +.++.+...
T Consensus       125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~  186 (318)
T 3sov_A          125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK  186 (318)
T ss_dssp             EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence            33788887666666553  578888887643332222333455789999985 666666543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.79  E-value=0.054  Score=53.81  Aligned_cols=152  Identities=10%  Similarity=0.009  Sum_probs=88.3

Q ss_pred             cEEEEEEcC-C-CCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC-C----eEEEEECCCCcc
Q 037288          258 TVWTADFCT-N-PSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN-G----AIVTVDVRKRQR  330 (513)
Q Consensus       258 ~V~~~~~s~-~-g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d-g----~i~iwd~~~~~~  330 (513)
                      ....++++| + +.++++-..+.|+.+|+.++....+.........++|+++|+.|+++... +    .+.+++.. +..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            456788987 3 44444433456999999887766655555568999999999966666542 2    23333322 211


Q ss_pred             ccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCc
Q 037288          331 GCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTR  409 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~  409 (513)
                      .. ...+                               ..+.++   .. ++++| ++.++++-..++.|..+|..   .
T Consensus       217 ~~-~~~l-------------------------------~~~~~p---~g-iavdp~~g~lyv~d~~~~~V~~~~~~---~  257 (430)
T 3tc9_A          217 KV-ITEL-------------------------------TKGQNC---NG-AETHPINGELYFNSWNAGQVFRYDFT---T  257 (430)
T ss_dssp             CS-EEEE-------------------------------EECSSC---CC-EEECTTTCCEEEEETTTTEEEEEETT---T
T ss_pred             ee-eeee-------------------------------ccCCCc---eE-EEEeCCCCEEEEEECCCCEEEEEECC---C
Confidence            10 0000                               011111   12 35677 67766666678899999985   2


Q ss_pred             cce---EEecCCCCceeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCC
Q 037288          410 GAV---QSYEGHVNSHTRIQLGVDQSERFVM-SGGEDCKLRIWSIRS  452 (513)
Q Consensus       410 ~~~---~~~~~h~~~v~~~~~~~s~~g~~l~-sg~~Dg~v~vwd~~~  452 (513)
                      ...   ...... ..-  ..++|+|+|++|+ +-...+.|..++...
T Consensus       258 ~~~~~~~~~~~~-~~P--~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          258 QETTPLFTIQDS-GWE--FHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TEEEEEEECSSS-SCC--EEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CcEEEEEEcCCC-Ccc--eeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            222   122221 112  3389999999554 445678899987653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.78  E-value=0.12  Score=50.29  Aligned_cols=162  Identities=12%  Similarity=0.036  Sum_probs=92.6

Q ss_pred             EcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC-----CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc
Q 037288          264 FCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK-----SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR  338 (513)
Q Consensus       264 ~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-----~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  338 (513)
                      .+.+|..++.+.++.||.-++..+..-+.+..+     ..|..+..+|+|.+||..+ +..|.|..+..+.... . . .
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~-~-~-~  103 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNV-E-D-V  103 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCC-C-C-H
T ss_pred             EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccC-c-c-c
Confidence            345788888888888998887744333333332     2588899999999999885 5689999887432211 0 0 0


Q ss_pred             ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC---CCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288          339 RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL---YDQYFLASSMDGTVKLYDHRLTTRGAVQSY  415 (513)
Q Consensus       339 ~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~  415 (513)
                      +-..++..-.|         .+.     +. .......|..+ .|+|   .+..|++-..|+.|++||+......+. .+
T Consensus       104 ~~~~~~q~~ty---------~l~-----~~-~~~~~s~I~qV-lWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L  166 (452)
T 3pbp_A          104 SIQDAFQIFHY---------SID-----EE-EVGPKSSIKKV-LFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VL  166 (452)
T ss_dssp             HHHHTTEEEEE---------EGG-----GC-C--CCCCEEEE-EECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EE
T ss_pred             ccccccceeEE---------EcC-----Cc-ccCCCCceeEE-EeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-ch
Confidence            00011111000         000     00 00012233333 3333   466899999999999999974222244 34


Q ss_pred             c---------CCCCceeEEEEEEcCCCCEEEEEe--CCCcEEEE
Q 037288          416 E---------GHVNSHTRIQLGVDQSERFVMSGG--EDCKLRIW  448 (513)
Q Consensus       416 ~---------~h~~~v~~~~~~~s~~g~~l~sg~--~Dg~v~vw  448 (513)
                      .         .....+.  +++|..++-.|....  .+|.|+-.
T Consensus       167 ~k~~~~fg~d~~~~ev~--S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          167 NKPNNSFGLDARVNDIT--DLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCCCSEEESCSSCCCEE--EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             hccccccCCCcccceEE--EEEEcCCCcEEEEEecCCCCCEEEE
Confidence            3         1223333  488888776666644  77887653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.77  E-value=0.17  Score=50.12  Aligned_cols=153  Identities=7%  Similarity=0.002  Sum_probs=86.0

Q ss_pred             cEEEEEEcCC---CCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC----e-EEEEECCCCc
Q 037288          258 TVWTADFCTN---PSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG----A-IVTVDVRKRQ  329 (513)
Q Consensus       258 ~V~~~~~s~~---g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg----~-i~iwd~~~~~  329 (513)
                      ....++|+|+   +.++++-..+.|+.+|..++..............++|+++|+ |+.+...+    . +...+.. ..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~-~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA-SG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG-GT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC-CC
Confidence            4568899984   555554444679999998888766655555689999999999 44444321    1 2222221 11


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCC
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTT  408 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~  408 (513)
                      ...       .    ..                     ...+..   ... +++++ ++.++++-..++.|+.+|..  .
T Consensus       218 ~~~-------~----~~---------------------~~~~~~---P~g-iavd~~~G~lyv~d~~~~~V~~~d~~--~  259 (433)
T 4hw6_A          218 FTE-------R----LS---------------------LCNARG---AKT-CAVHPQNGKIYYTRYHHAMISSYDPA--T  259 (433)
T ss_dssp             TCC-------E----EE---------------------EEECSS---BCC-CEECTTTCCEEECBTTCSEEEEECTT--T
T ss_pred             eec-------c----cc---------------------ccccCC---CCE-EEEeCCCCeEEEEECCCCEEEEEECC--C
Confidence            000       0    00                     000111   111 25667 67666666667889999874  2


Q ss_pred             ccceEEe-cCCCCceeEEEEEEcCCCCEEEE-EeCCCcEEEEeCC
Q 037288          409 RGAVQSY-EGHVNSHTRIQLGVDQSERFVMS-GGEDCKLRIWSIR  451 (513)
Q Consensus       409 ~~~~~~~-~~h~~~v~~~~~~~s~~g~~l~s-g~~Dg~v~vwd~~  451 (513)
                      ......+ ...... ....++|+|+|++|+. -...+.|+.++..
T Consensus       260 g~~~~~~~~~~~~~-~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          260 GTLTEEEVMMDTKG-SNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CCEEEEEEECSCCS-SCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CeEEEEEeccCCCC-CcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            2221222 211111 1124899999995554 4557889998865

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.65  E-value=0.35  Score=45.92  Aligned_cols=180  Identities=9%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecC----Cc---EEEEEeC---CCeEEEEECC--CCccccccccc
Q 037288          270 QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHS----GN---VVLCGFR---NGAIVTVDVR--KRQRGCSSRAG  337 (513)
Q Consensus       270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~----~~---~l~sg~~---dg~i~iwd~~--~~~~~~~~~~~  337 (513)
                      +|++.-.+++.+||+ +|+.+..+.. +.+..+..-|+    |.   ++++..+   +.+|.+|++.  +..    +..+
T Consensus        43 ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----l~~i  116 (355)
T 3amr_A           43 LITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----LQSM  116 (355)
T ss_dssp             EEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----EEEC
T ss_pred             EEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----eeec
Confidence            333444567999999 7888777653 56777776662    22   3444444   4899999774  222    1111


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEE-cC-CCC-EEEEEecCCeEEEEecCCC-----Cc
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSL-QL-YDQ-YFLASSMDGTVKLYDHRLT-----TR  409 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~~-~l~s~s~dg~i~lwd~~~~-----~~  409 (513)
                      ..-..++..                       .+   ..+..++.+ ++ .+. ++++...+|.+..|++...     ..
T Consensus       117 ~~~~~pv~t-----------------------~~---~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~  170 (355)
T 3amr_A          117 TDPDHPIAT-----------------------AI---NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG  170 (355)
T ss_dssp             SCTTSCEEC-----------------------CC---SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred             cccccCcCC-----------------------CC---CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence            100000000                       00   111222122 44 343 6778888999999998421     12


Q ss_pred             cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCeEEEEecC--CCCCeEEEEEc--CC--CceE
Q 037288          410 GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR-----SGELVFEDKF--SNSVPSAVCWR--TQ--RSMG  478 (513)
Q Consensus       410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~-----~~~~~~~~~~--~~~~v~~v~~~--p~--~~~~  478 (513)
                      ..+++|.... .+..  +.+++....|+.+-+|.-|..++..     +++++..+..  -...+..|+.-  ++  +.++
T Consensus       171 ~lVR~f~lgs-q~Eg--cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          171 KKVRAFKMNS-QTEG--MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             EEEEEEECSS-CEEE--EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             eEEEEecCCC-Ccce--EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence            2567776443 4444  6778888899999999777777755     4566665532  12358888874  43  4678


Q ss_pred             EeeCCC
Q 037288          479 PQIEGK  484 (513)
Q Consensus       479 ~t~~~~  484 (513)
                      +++.++
T Consensus       248 vSsQG~  253 (355)
T 3amr_A          248 ASSQGN  253 (355)
T ss_dssp             EEEGGG
T ss_pred             EEcCCC
Confidence            888665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.63  E-value=0.62  Score=46.08  Aligned_cols=200  Identities=9%  Similarity=0.032  Sum_probs=109.9

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeCC-----eEEEEECCCCcE-EEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTNL-----GAAMVDMETGMA-SWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIV  321 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-----~i~vwd~~~~~~-~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~  321 (513)
                      +..+.........++++++|.++++...+     .+...+...+.. ...+..-.....++++| +|.+.++-..++.|+
T Consensus       174 v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~  253 (433)
T 4hw6_A          174 VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMIS  253 (433)
T ss_dssp             EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred             EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence            33344445568999999999965555421     243344322211 11222333456788899 677766666778899


Q ss_pred             EEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE-EecCCeEE
Q 037288          322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA-SSMDGTVK  400 (513)
Q Consensus       322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~i~  400 (513)
                      .+|..++....   .+...                                .......-+++++++++|.. -...+.|.
T Consensus       254 ~~d~~~g~~~~---~~~~~--------------------------------~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          254 SYDPATGTLTE---EEVMM--------------------------------DTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             EECTTTCCEEE---EEEEC--------------------------------SCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEECCCCeEEE---EEecc--------------------------------CCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            99987554211   00000                                00011112578889985554 44578899


Q ss_pred             EEecCCCCcc--ceEEecCC------CC-------ceeEEEEEE---------cCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          401 LYDHRLTTRG--AVQSYEGH------VN-------SHTRIQLGV---------DQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       401 lwd~~~~~~~--~~~~~~~h------~~-------~v~~~~~~~---------s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      .+|+......  ....+.+.      .+       ......+++         +++|.+.++-...+.|+.++. +|...
T Consensus       299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~  377 (433)
T 4hw6_A          299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT  377 (433)
T ss_dssp             EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred             EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence            9886421111  11222221      00       001233777         677777777777889999985 66544


Q ss_pred             EEecCC-----------------CCCeEEEEEc-CCCceEEeeCCC
Q 037288          457 FEDKFS-----------------NSVPSAVCWR-TQRSMGPQIEGK  484 (513)
Q Consensus       457 ~~~~~~-----------------~~~v~~v~~~-p~~~~~~t~~~~  484 (513)
                      ......                 -.....|++. +++.++++....
T Consensus       378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence            332110                 1236789999 667777766543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.60  E-value=0.6  Score=45.56  Aligned_cols=229  Identities=8%  Similarity=0.070  Sum_probs=120.1

Q ss_pred             cEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEE
Q 037288          225 SIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQV  304 (513)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~  304 (513)
                      .+.+.++.++....+ .|+..              -+.-.+|..+.+|.-+..++.|+|+++...+..+....+|.-=.|
T Consensus        49 ~vvIiDl~~~~~~~r-rpi~A--------------dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkW  113 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIR-RPISA--------------DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKW  113 (494)
T ss_dssp             EEEEEETTSTTSCEE-EECCC--------------SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEE
T ss_pred             eEEEEECCCCCccee-ccccc--------------ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEe
Confidence            677778777665422 22222              234467888888877777899999999998888887777766677


Q ss_pred             ecCCcEEEEEeCCCeEEEEECCCCccccccccccccC----cCeEEEeeCC----eEEEeEeecccCcccceeEeecCC-
Q 037288          305 IHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHR----IPYSRLQRND----RVTNEQWFELKANIWPSHTTFMPS-  375 (513)
Q Consensus       305 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~----~~v~~v~~~~----~~~s~~w~~~~~~~~~~~~~~~~~-  375 (513)
                      -.+..+ +-- .+..|+-|++.... .+ .+.+..|.    ..|..-..++    .++.|- ....+.......++--+ 
T Consensus       114 is~~~l-~lV-T~taVyHWsi~~~s-~P-~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI-~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          114 ISLNTV-ALV-TDNAVYHWSMEGES-QP-VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI-SAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             EETTEE-EEE-CSSEEEEEESSSSC-CC-EEEEECCGGGTTCEEEEEEECTTSSEEEEEEE-EEETTEEEEEEEEEESTT
T ss_pred             cCCCeE-EEE-cCCeeEEecccCCC-Cc-hhheecchhcccceEEEEEECCCCCeEEEEee-cccCCcccceEEEeeccc
Confidence            654443 333 35789999997532 22 34444442    2232222222    111221 11111111111111111 


Q ss_pred             CceEE-----EEEcC---CC-----CEEEEEecC---CeEEEEecCCC-Ccc-c--eEEec-----CCCCceeEEEEEEc
Q 037288          376 SISCL-----QSLQL---YD-----QYFLASSMD---GTVKLYDHRLT-TRG-A--VQSYE-----GHVNSHTRIQLGVD  430 (513)
Q Consensus       376 ~v~~~-----~~~~~---~~-----~~l~s~s~d---g~i~lwd~~~~-~~~-~--~~~~~-----~h~~~v~~~~~~~s  430 (513)
                      .+.-.     .+|..   +|     +.|+.+...   +.++|.++... ... +  .+...     ...+. ..+.+.++
T Consensus       189 ~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D-FPvamqvs  267 (494)
T 1bpo_A          189 KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND-FPVAMQIS  267 (494)
T ss_dssp             CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC-CEEEEEEE
T ss_pred             cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC-ceeEEEec
Confidence            11110     01110   00     022222221   55666665421 000 0  01110     01111 11345667


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          431 QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       431 ~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      +.-..++.-..-|.|++||+.++.++..-+-...+|-..+....
T Consensus       268 ~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~  311 (494)
T 1bpo_A          268 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  311 (494)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             ccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCC
Confidence            77778888888999999999999999987766666666555544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.51  E-value=0.22  Score=51.42  Aligned_cols=20  Identities=20%  Similarity=0.350  Sum_probs=17.0

Q ss_pred             CCeEEEEECCCCcEEEEeee
Q 037288          276 NLGAAMVDMETGMASWVCRS  295 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~~~~~~  295 (513)
                      ++.|..+|..+|+.++.+..
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEECCCCcEEEEEcc
Confidence            56799999999999988764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.51  E-value=0.43  Score=51.11  Aligned_cols=175  Identities=9%  Similarity=0.023  Sum_probs=100.9

Q ss_pred             EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCcccccccc-ccccCcCeEEE
Q 037288          270 QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSRA-GRRHRIPYSRL  347 (513)
Q Consensus       270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v  347 (513)
                      +|+.+....|+..++.......+......+.+|+|++.+. ++++-...+.|+.+++........... +....      
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l------  470 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI------  470 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC------
T ss_pred             ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC------
Confidence            5555555668888888776655566666788999998554 455555568898888875321000000 00000      


Q ss_pred             eeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCCccceEEec-CCCCceeEE
Q 037288          348 QRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTTRGAVQSYE-GHVNSHTRI  425 (513)
Q Consensus       348 ~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~~~~~~~~~-~h~~~v~~~  425 (513)
                                                 ..... +++.+.+ +++++-...+.|.+.++.   .....++. ......  .
T Consensus       471 ---------------------------~~P~G-LAvD~~~~~LY~tD~~~~~I~v~~ld---G~~~~~l~~~~l~~P--~  517 (791)
T 3m0c_C          471 ---------------------------QAPDG-LAVDWIHSNIYWTDSVLGTVSVADTK---GVKRKTLFRENGSKP--R  517 (791)
T ss_dssp             ---------------------------SCCCE-EEEETTTTEEEEEETTTTEEEEEETT---SSSEEEEEECTTCCE--E
T ss_pred             ---------------------------CCcce-eeeeecCCcEEEEecCCCeEEEEeCC---CCeEEEEEeCCCCCc--c
Confidence                                       11122 2455455 445555567889999985   33333332 222223  3


Q ss_pred             EEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCC
Q 037288          426 QLGVDQSERFVMSGGE--DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEG  483 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~  483 (513)
                      .++++|.+.+|+....  .+.|...++........+.......++|++.+. +.++.+...
T Consensus       518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            4888998666666543  367999998655544444444456899999966 666666543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.26  E-value=0.19  Score=52.09  Aligned_cols=56  Identities=16%  Similarity=0.080  Sum_probs=40.3

Q ss_pred             CCeEEEEECCCCcEEEEeeeCCCe---------------------------------------EEEEEecCCcEEEEEeC
Q 037288          276 NLGAAMVDMETGMASWVCRSKSDI---------------------------------------LAQQVIHSGNVVLCGFR  316 (513)
Q Consensus       276 ~~~i~vwd~~~~~~~~~~~~~~~V---------------------------------------~~l~~~~~~~~l~sg~~  316 (513)
                      ++.|+.+|..+|+.++.+......                                       ...++.++..+|+.++.
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            567999999999999887643221                                       13456677778888876


Q ss_pred             CC----------------eEEEEECCCCccc
Q 037288          317 NG----------------AIVTVDVRKRQRG  331 (513)
Q Consensus       317 dg----------------~i~iwd~~~~~~~  331 (513)
                      ++                .|..+|.++++..
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~  291 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAK  291 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCcee
Confidence            54                7888888877653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.18  E-value=0.54  Score=42.68  Aligned_cols=70  Identities=4%  Similarity=-0.002  Sum_probs=43.3

Q ss_pred             CcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcE---EEEee-------eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          257 CTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMA---SWVCR-------SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~---~~~~~-------~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ...-.+++.+++.++++. .++.+.++++.....   +....       .......|+|+|+++.|+++.......+|.+
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            456778888888766654 455688887765432   12221       2234689999999876666655544445544


Q ss_pred             C
Q 037288          326 R  326 (513)
Q Consensus       326 ~  326 (513)
                      .
T Consensus       150 ~  150 (255)
T 3qqz_A          150 N  150 (255)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.03  E-value=0.13  Score=54.30  Aligned_cols=179  Identities=12%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             CCEEEEEeCCeEEEEECCCCcEEEEeeeCC-----CeEEEEEecCCcEEEEEeC------CCeEEEEECCCCcccccccc
Q 037288          268 PSQAVIGTNLGAAMVDMETGMASWVCRSKS-----DILAQQVIHSGNVVLCGFR------NGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       268 g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~-----~V~~l~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~  336 (513)
                      +.+++.+.++.+..+|..+|+.++......     .+.+--.-.++ .++++..      +|.|..+|..+++.......
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            334444457779999999999998876421     11110011144 4555533      58999999999876431111


Q ss_pred             ccccCcCeEEEeeCCeEEEe--EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-----------------
Q 037288          337 GRRHRIPYSRLQRNDRVTNE--QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG-----------------  397 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~~~~s~--~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg-----------------  397 (513)
                      ..+.......   .+.+..+  .|.-  ...+.   ......+.+...++++...++.++.++                 
T Consensus       197 ~~~~p~~~~~---~~~~~~~~~~~~g--~~~w~---~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          197 VPGDPALPYE---HPELREAAKTWQG--DQYWK---LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             SCCCTTSCCS---SHHHHHHHTTCCS--SCHHH---HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             cCCCCCcccc---ccccccccccCCc--cceee---eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            1100000000   0000000  0000  00000   000011111246677778888887765                 


Q ss_pred             --eEEEEecCCCCccceEEecC--CC-------CceeEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          398 --TVKLYDHRLTTRGAVQSYEG--HV-------NSHTRIQLGVDQSER---FVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       398 --~i~lwd~~~~~~~~~~~~~~--h~-------~~v~~~~~~~s~~g~---~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                        .|..+|..  +...+-.++.  |.       .+...  ..+..+|+   .|+.++.+|.++++|..+|+++...
T Consensus       269 ~~~v~AlD~~--tG~~~W~~~~~~~~~wd~~~~~~~~~--~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          269 LSSILAIRPD--TGKLAWHYQVTPGDSWDFTATQQITL--AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             TTEEEEECTT--TCCEEEEEESSTTCCSCCCCCSCEEE--EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeeEEEEcCC--CCceeeEeecCCCccccccCCCCcEE--EEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence              38889986  4444444432  32       22222  22334565   6889999999999999999998554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.02  E-value=0.27  Score=48.71  Aligned_cols=143  Identities=5%  Similarity=-0.058  Sum_probs=82.0

Q ss_pred             CeEEEEEec-CCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288          298 DILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS  376 (513)
Q Consensus       298 ~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~  376 (513)
                      ....|+++| ++..|+++...+.|+.+|+.......    +....                                 ..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~---------------------------------~~  180 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGL---------------------------------SK  180 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCC---------------------------------SC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCC---------------------------------CC
Confidence            357888998 45556666555889999987654221    11111                                 11


Q ss_pred             ceEEEEEcCCCCEEEEEec-CC----eEEEEecCCCCccc--eEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 037288          377 ISCLQSLQLYDQYFLASSM-DG----TVKLYDHRLTTRGA--VQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIW  448 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s~-dg----~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vw  448 (513)
                      ... +++++++++|+++.. ++    .+..++.   ....  ...+..... ...  ++++| +|.++++-..++.|+.+
T Consensus       181 P~~-ia~d~~G~~lyvad~~~~~~~~~v~~~~~---~g~~~~~~~l~~~~~-p~g--iavdp~~g~lyv~d~~~~~V~~~  253 (430)
T 3tc9_A          181 VRT-ICWTHEADSMIITNDQNNNDRPNNYILTR---ESGFKVITELTKGQN-CNG--AETHPINGELYFNSWNAGQVFRY  253 (430)
T ss_dssp             EEE-EEECTTSSEEEEEECCSCTTSEEEEEEEG---GGTSCSEEEEEECSS-CCC--EEECTTTCCEEEEETTTTEEEEE
T ss_pred             cce-EEEeCCCCEEEEEeCCCCcccceEEEEeC---CCceeeeeeeccCCC-ceE--EEEeCCCCEEEEEECCCCEEEEE
Confidence            122 467788886665554 22    2333443   2211  122221111 122  67899 67766666678899999


Q ss_pred             eCCCCeEEEEecC-CCCCeEEEEEcCCCc-eEEeeCCC
Q 037288          449 SIRSGELVFEDKF-SNSVPSAVCWRTQRS-MGPQIEGK  484 (513)
Q Consensus       449 d~~~~~~~~~~~~-~~~~v~~v~~~p~~~-~~~t~~~~  484 (513)
                      +..++........ .....+.++|+|++. ++++....
T Consensus       254 ~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          254 DFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             ETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence            9987765332222 234578999999965 66665443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.96  E-value=1.2  Score=42.38  Aligned_cols=192  Identities=9%  Similarity=0.117  Sum_probs=110.3

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC----CCCE--EE-EE--e--CCeEEEEEC--CCCc
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT----NPSQ--AV-IG--T--NLGAAMVDM--ETGM  288 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~----~g~~--l~-s~--s--~~~i~vwd~--~~~~  288 (513)
                      ..+.+.+|++. ...+            +.+..  +.++.++.-|    .|+.  ++ +.  .  +++|.+|++  .++.
T Consensus        48 k~~gL~Vydl~-G~~l------------~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           48 KKSGLVVYSLD-GKML------------HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             TTTEEEEEETT-SCEE------------EEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             CCCCEEEEcCC-CcEE------------EEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            35678888884 2222            22221  4566666655    2322  33 22  2  356999966  4444


Q ss_pred             EEEEee-------eC-CCeEEEEE--ecC-Cc-EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288          289 ASWVCR-------SK-SDILAQQV--IHS-GN-VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE  356 (513)
Q Consensus       289 ~~~~~~-------~~-~~V~~l~~--~~~-~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~  356 (513)
                       +..+.       .. ..+..+++  ++. +. ++++...+|.+..|++.......           +.           
T Consensus       113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-----------~~-----------  169 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-----------IS-----------  169 (355)
T ss_dssp             -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-----------EE-----------
T ss_pred             -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-----------cc-----------
Confidence             33331       11 44666777  664 43 68888899999999985321110           00           


Q ss_pred             EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC---ccceEEec-CC-CCceeEEEEEEcC
Q 037288          357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT---RGAVQSYE-GH-VNSHTRIQLGVDQ  431 (513)
Q Consensus       357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~---~~~~~~~~-~h-~~~v~~~~~~~s~  431 (513)
                              ....+.+...+.+..+ ...+....|.++-.+..|..+|.+...   ...+..+. ++ ...+..+.+.-.+
T Consensus       170 --------~~lVR~f~lgsq~Egc-vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~  240 (355)
T 3amr_A          170 --------GKKVRAFKMNSQTEGM-AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA  240 (355)
T ss_dssp             --------EEEEEEEECSSCEEEE-EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred             --------ceEEEEecCCCCcceE-EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC
Confidence                    0123345555566654 556677888889988777777754211   11343332 22 2356675554466


Q ss_pred             CCC-EEEEEe-CCCcEEEEeCC-CCeEEEEec
Q 037288          432 SER-FVMSGG-EDCKLRIWSIR-SGELVFEDK  460 (513)
Q Consensus       432 ~g~-~l~sg~-~Dg~v~vwd~~-~~~~~~~~~  460 (513)
                      +++ +|++++ .+.+..+||.. +.+.+..+.
T Consensus       241 ~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          241 DGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             GGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            666 676666 57799999997 677777764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.83  E-value=0.68  Score=47.77  Aligned_cols=20  Identities=35%  Similarity=0.336  Sum_probs=16.6

Q ss_pred             CCcEEEEeCCCCeEEEEecC
Q 037288          442 DCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       442 Dg~v~vwd~~~~~~~~~~~~  461 (513)
                      +|.|..||+.+++.+-....
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~  484 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKE  484 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEE
T ss_pred             cceEEEEECCCCCEEEEecC
Confidence            68899999999998877543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.78  E-value=0.81  Score=42.38  Aligned_cols=184  Identities=13%  Similarity=0.027  Sum_probs=90.2

Q ss_pred             CCCEEEEEe-C------CeEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC-----CeEEEEECCCCc---
Q 037288          267 NPSQAVIGT-N------LGAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN-----GAIVTVDVRKRQ---  329 (513)
Q Consensus       267 ~g~~l~s~s-~------~~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~---  329 (513)
                      ++.+++.|+ .      +.+.++|+.+++-...-....+  -.++ ...++.+++.|+.+     ..+.+||+.+..   
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS-VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccE-EEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            445555555 2      2478899887753332221111  1222 22367788888765     468999998876   


Q ss_pred             cccccccccccCcCeEEEeeCC-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      ... +..+.........+.... .++.|+            ++..............+..-.++..+  +++.++.|+.+
T Consensus        93 W~~-~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  169 (301)
T 2vpj_A           93 WYS-VAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD  169 (301)
T ss_dssp             CEE-ECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eEE-CCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence            433 333333333333333344 333343            23222221111111111111222222  67777777754


Q ss_pred             -----CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE
Q 037288          397 -----GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGELVFE  458 (513)
Q Consensus       397 -----g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~~~~  458 (513)
                           ..+.+||+.......+..+.........  +.  -++++++.|+.+     ..+.+||+.+.+-...
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  237 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV--AL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV  237 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE--EE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCcccceEEEEeCCCCcEEeCCCCCcccccceE--EE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence                 4588899863222222222111111111  22  256777788764     4689999988775443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.73  E-value=1.2  Score=41.90  Aligned_cols=183  Identities=11%  Similarity=-0.010  Sum_probs=92.8

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEE--eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWV--CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~--~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      ..+..+.+.+++..++++.++.|.. ..+.|+.-..  ......+.++.+.+++.+++.+...+..+-.|-....... +
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~-~  199 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP-H  199 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE-E
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE-C
Confidence            4467777777777777776655422 2223432111  2244568999999998888776443333333321111111 0


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEE
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~  414 (513)
                      .  ...                                 ...+.. +.+.+++..+ .++.+|.+.+.+..  ....-..
T Consensus       200 ~--~~~---------------------------------~~~~~~-~~~~~~g~~~-~~~~~G~~~~s~~D--~G~tW~~  240 (327)
T 2xbg_A          200 N--RTT---------------------------------SRRLHN-MGFTPDGRLW-MIVNGGKIAFSDPD--NSENWGE  240 (327)
T ss_dssp             E--CCS---------------------------------SSCEEE-EEECTTSCEE-EEETTTEEEEEETT--EEEEECC
T ss_pred             C--CCC---------------------------------CCccce-eEECCCCCEE-EEeCCceEEEecCC--CCCeeEe
Confidence            0  011                                 112222 2455667655 44557877776321  0111111


Q ss_pred             ec-C---CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC---CCCCeEEEEEcCCCceEEeeCCC
Q 037288          415 YE-G---HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF---SNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       415 ~~-~---h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +. .   +...+  ..+.+.+++.+++++. +|.| ++....|+.-..+..   ....+..+.|.++..+++.....
T Consensus       241 ~~~~~~~~~~~~--~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G  313 (327)
T 2xbg_A          241 LLSPLRRNSVGF--LDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKG  313 (327)
T ss_dssp             CBCTTSSCCSCE--EEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTT
T ss_pred             ccCCcccCCcce--EEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCc
Confidence            11 1   11223  3477888777666554 7777 555565654444331   23457788887665555554443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.72  E-value=0.15  Score=44.95  Aligned_cols=66  Identities=5%  Similarity=-0.198  Sum_probs=44.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcE------EEEeeeC--CCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMA------SWVCRSK--SDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~------~~~~~~~--~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .+.+++|+|+|.+.++ .++.+.-.+..+...      ...+...  ..-.++.|.|+|.+.++  .||.|+-++.-
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            5669999999998888 777765555544211      1112111  11478999999998888  56999877753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.37  E-value=0.035  Score=58.95  Aligned_cols=172  Identities=8%  Similarity=0.015  Sum_probs=94.4

Q ss_pred             EEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCC----ccccccccccccCcCeE
Q 037288          271 AVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKR----QRGCSSRAGRRHRIPYS  345 (513)
Q Consensus       271 l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~  345 (513)
                      |+.+....|+..++.+.....+......+..++|++.+..|+.+ ...+.|+.+++...    ....   .+....... 
T Consensus       380 ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~---~i~~~~~~P-  455 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAP-  455 (699)
T ss_dssp             BCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC---BCCSCC--C-
T ss_pred             EEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE---EEeCCCCCc-
Confidence            33344456888888877665555555567889999877666555 44678999998752    1110   000000000 


Q ss_pred             EEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCccceEEec-CCCCcee
Q 037288          346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRGAVQSYE-GHVNSHT  423 (513)
Q Consensus       346 ~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~-~h~~~v~  423 (513)
                                                      .. +++.+ .++++++-...+.|.++++.   ...+..+. .......
T Consensus       456 --------------------------------~g-lavD~~~g~LY~tD~~~~~I~v~d~d---g~~~~~l~~~~~~~P~  499 (699)
T 1n7d_A          456 --------------------------------DG-LAVDWIHSNIYWTDSVLGTVSVADTK---GVKRKTLFREQGSKPR  499 (699)
T ss_dssp             --------------------------------CC-EECCCSSSBCEECCTTTSCEEEEBSS---SCCEEEECCCSSCCCC
T ss_pred             --------------------------------ce-EEEEeeCCcEEEEeccCCeEEEEecC---CCceEEEEeCCCCCcc
Confidence                                            11 23442 34445554557789999874   33333332 1111222


Q ss_pred             EEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288          424 RIQLGVDQSERFVMSGGE--DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK  484 (513)
Q Consensus       424 ~~~~~~s~~g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~  484 (513)
                      .  ++++|.+.+|+.+..  .+.|..+++................+.|+|+|+ +.++++....
T Consensus       500 g--iavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          500 A--IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             C--EECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred             e--EEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC
Confidence            3  778887665555443  267888887543322222223345788999987 6666666543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.26  E-value=2.4  Score=41.26  Aligned_cols=211  Identities=10%  Similarity=-0.038  Sum_probs=112.5

Q ss_pred             ccCcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCC----cEEEEee-eCCCeEEEEEec-CCcEEEEEeCCCeEEEEECC
Q 037288          255 FKCTVWTADFCTNPSQAV-IG-TNLGAAMVDMETG----MASWVCR-SKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~----~~~~~~~-~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ....+..++|++.+..|. +- .++.|..+++...    ....... .-.....+++.+ .+++.++-...+.|.+.|+.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            446788999998655444 43 3456888888752    2223333 334578899987 45566666667899999987


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeEeecccCcc-------cceeEe-ecCCCceEEEEEcCCCCEEEEEe-
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQWFELKANI-------WPSHTT-FMPSSISCLQSLQLYDQYFLASS-  394 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s-  394 (513)
                      ......   .+.........|+++|   .++-..|... +.+       .....+ ...-....-+++++++..|..+. 
T Consensus       190 g~~~~~---l~~~~~~~P~~iavdp~~g~ly~td~~~~-~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          190 GVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             TCSEEE---EEECSSCCEEEEEEETTTTEEEEEECSSS-CCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCceEE---EEeCCCCCcceEEEecccCeEEEEeCCCC-CEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            654322   1222334466777766   3333333210 000       001111 11111222347776666666554 


Q ss_pred             cCCeEEEEecCCCCccceEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEE-Ec
Q 037288          395 MDGTVKLYDHRLTTRGAVQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVC-WR  472 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~-~~  472 (513)
                      ..+.|..+|+.   ......+ ...........+++. ++.++++-...+.|..+|..+|+.+..+.........+. ++
T Consensus       266 ~~~~I~~~d~d---G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~  341 (400)
T 3p5b_L          266 KLHSISSIDVN---GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFH  341 (400)
T ss_dssp             TTTEEEEEETT---SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEES
T ss_pred             CCCEEEEEeCC---CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence            46789999985   2322222 221111112235553 344555666678899999888877777654444344543 44


Q ss_pred             C
Q 037288          473 T  473 (513)
Q Consensus       473 p  473 (513)
                      |
T Consensus       342 ~  342 (400)
T 3p5b_L          342 N  342 (400)
T ss_dssp             G
T ss_pred             e
Confidence            4

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.16  E-value=1.2  Score=41.14  Aligned_cols=173  Identities=12%  Similarity=0.018  Sum_probs=84.6

Q ss_pred             eEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC-----CeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288          278 GAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN-----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN  350 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  350 (513)
                      .+.++|+.+.+-...-....+  -.++. ..++.+++.|+.+     ..+.+||+.+.+... +..+.........+.+.
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~~  108 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVLN  108 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEET
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEEC
Confidence            478899887753332221111  12222 2367788888765     368899998876544 33343333333334444


Q ss_pred             C-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-------CeEEEEecCCCCcc
Q 037288          351 D-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-------GTVKLYDHRLTTRG  410 (513)
Q Consensus       351 ~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-------g~i~lwd~~~~~~~  410 (513)
                      . .++.|+            ++..............+....++..+  +++.++.|+.+       ..+.+||+......
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            4 334443            23222221111111111111222222  56777777653       35888998632222


Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGELVFE  458 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~~~~  458 (513)
                      .+..+.........  +.  -++++++.||.+     ..+.+||+.+.+-...
T Consensus       187 ~~~~~p~~r~~~~~--~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  235 (302)
T 2xn4_A          187 YIAEMSTRRSGAGV--GV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV  235 (302)
T ss_dssp             EECCCSSCCBSCEE--EE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred             ECCCCccccccccE--EE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence            22222211111111  22  257777888765     3689999988765443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.16  E-value=1  Score=42.42  Aligned_cols=150  Identities=9%  Similarity=-0.067  Sum_probs=84.6

Q ss_pred             eEEEEEecCCcEEEEEe-CCCeEEEEECCCCccccccccccc----cCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288          299 ILAQQVIHSGNVVLCGF-RNGAIVTVDVRKRQRGCSSRAGRR----HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM  373 (513)
Q Consensus       299 V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~  373 (513)
                      -.+++|++....++.++ ..++|..||...+.... + .+.+    .....                             
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-~-~~~~~s~~g~~~~-----------------------------   63 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-V-VIDGASSNGDGEQ-----------------------------   63 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-E-CCTTTCCSSCCSE-----------------------------
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-E-ecCCccccCCCcc-----------------------------
Confidence            46788988665555555 79999999997553222 1 1111    00000                             


Q ss_pred             CCCceEEEEE---cCCCCEEEEEe-------------cCCeEEEEecC---CCCccceEEecCCC---------CceeEE
Q 037288          374 PSSISCLQSL---QLYDQYFLASS-------------MDGTVKLYDHR---LTTRGAVQSYEGHV---------NSHTRI  425 (513)
Q Consensus       374 ~~~v~~~~~~---~~~~~~l~s~s-------------~dg~i~lwd~~---~~~~~~~~~~~~h~---------~~v~~~  425 (513)
                        .+.. +.+   .+++.++++..             .+..|..||+.   ..+......+....         ..-...
T Consensus        64 --~~sG-l~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n  140 (334)
T 2p9w_A           64 --QMSG-LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV  140 (334)
T ss_dssp             --EEEE-EEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred             --eeeE-EEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence              0122 234   56666766543             26789999985   21111122222111         111245


Q ss_pred             EEEEcCCCCEEEEEeCC-CcEEEEeCCCCeEEEEec--C----CCCCeEEEEEcCCCceEEeeCC
Q 037288          426 QLGVDQSERFVMSGGED-CKLRIWSIRSGELVFEDK--F----SNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       426 ~~~~s~~g~~l~sg~~D-g~v~vwd~~~~~~~~~~~--~----~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      .++++++|+..++++.- +.|...+.... .+..+.  .    ...-.+.++++|++..|+..+.
T Consensus       141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          141 QSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             eeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence            68999999999988888 88887776544 333321  1    1122679999999754444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.04  E-value=1.2  Score=41.48  Aligned_cols=183  Identities=10%  Similarity=-0.008  Sum_probs=90.3

Q ss_pred             CCCEEEEEeC-----CeEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeC----C-----CeEEEEECCCCcc
Q 037288          267 NPSQAVIGTN-----LGAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFR----N-----GAIVTVDVRKRQR  330 (513)
Q Consensus       267 ~g~~l~s~s~-----~~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~----d-----g~i~iwd~~~~~~  330 (513)
                      ++.+++.|+.     +.+.++|..+++-...-....+  -.++.. .++.+++.|+.    +     ..+.+||+.+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            5566666651     3488899988764332221111  122222 36777777776    2     4688999988765


Q ss_pred             ccccccccccCcCeEEEeeCC-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-
Q 037288          331 GCSSRAGRRHRIPYSRLQRND-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-  396 (513)
Q Consensus       331 ~~~~~~~~~h~~~v~~v~~~~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-  396 (513)
                      .. +..+.........+.+.. .++.|+            ++...........+..+..-.+...+  ++.+++.|+.+ 
T Consensus       103 ~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  179 (308)
T 1zgk_A          103 SP-CAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG  179 (308)
T ss_dssp             EE-CCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             eE-CCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence            43 333333333333344444 333333            22222221111111111111122222  67777777764 


Q ss_pred             ----CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEE
Q 037288          397 ----GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGELVF  457 (513)
Q Consensus       397 ----g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~~~  457 (513)
                          ..+.+||+.......+..+.........  +.+  ++++++.|+.+     ..+.+||+.+.+-..
T Consensus       180 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          180 TNRLNSAECYYPERNEWRMITAMNTIRSGAGV--CVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEE--EEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCcCceEEEEeCCCCeEeeCCCCCCccccceE--EEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence                4588899863222222222211111111  222  57777888765     569999998876543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.01  E-value=0.39  Score=50.42  Aligned_cols=121  Identities=12%  Similarity=-0.006  Sum_probs=72.0

Q ss_pred             EEEEEec-CCcEEEEEeCCC-----------eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288          300 LAQQVIH-SGNVVLCGFRNG-----------AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP  367 (513)
Q Consensus       300 ~~l~~~~-~~~~l~sg~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~  367 (513)
                      .+.++.+ ++++++.|+.+.           .+.+||+.+.+... +..+...                           
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-~~~~~~~---------------------------  240 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-RTVTVTK---------------------------  240 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-CEEEECS---------------------------
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-CcccCCC---------------------------
Confidence            3566777 889999887653           57888888776433 1111000                           


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe-CC---
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG-ED---  442 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~D---  442 (513)
                            ....++...+..++++++.|+. +..+.+||........+..+......   ..+++.++|++++.|| .+   
T Consensus       241 ------~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~---~s~~~~~dg~iyv~GG~~~~~~  311 (656)
T 1k3i_A          241 ------HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY---QSSATMSDGRVFTIGGSWSGGV  311 (656)
T ss_dssp             ------CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS---CEEEECTTSCEEEECCCCCSSS
T ss_pred             ------CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc---cceEEecCCeEEEEeCcccCCc
Confidence                  0111111244568899999884 56899999863222222222211111   2245557899999998 44   


Q ss_pred             --CcEEEEeCCCCeEEE
Q 037288          443 --CKLRIWSIRSGELVF  457 (513)
Q Consensus       443 --g~v~vwd~~~~~~~~  457 (513)
                        ..+.+||..+.+...
T Consensus       312 ~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          312 FEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             CCCCEEEEETTTTEEEE
T ss_pred             ccccceEeCCCCCccee
Confidence              579999998876443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=94.92  E-value=2.5  Score=39.59  Aligned_cols=183  Identities=8%  Similarity=-0.084  Sum_probs=98.7

Q ss_pred             CcEEEEEEcCCCCEEE-EEe-CCeEEEEECCC----CcEEEEee-eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCC
Q 037288          257 CTVWTADFCTNPSQAV-IGT-NLGAAMVDMET----GMASWVCR-SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~-s~s-~~~i~vwd~~~----~~~~~~~~-~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~  328 (513)
                      .....++|++.+..|. +-. ++.|..+++.+    ......+. .-.....+++.+.+ ++.++-..++.|.++|+...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4678999998665444 443 45698899876    22222232 22346788998754 55555566789999998754


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-C-CeEEEEecCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-D-GTVKLYDHRL  406 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-d-g~i~lwd~~~  406 (513)
                      .... +  +...                                 ...... ++++|.+..|..+.. . +.|..+++. 
T Consensus       110 ~~~~-~--~~~~---------------------------------~~~P~~-iavdp~~g~ly~~d~~~~~~I~~~~~d-  151 (316)
T 1ijq_A          110 KRKT-L--FREN---------------------------------GSKPRA-IVVDPVHGFMYWTDWGTPAKIKKGGLN-  151 (316)
T ss_dssp             SEEE-E--EECT---------------------------------TCCEEE-EEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred             ceEE-E--EECC---------------------------------CCCcce-EEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence            3211 0  0000                                 011222 355665554444443 3 678888874 


Q ss_pred             CCccceEEec-CCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEec--CCCCCeEEEEEcCCCceEEeeC
Q 037288          407 TTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDK--FSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       407 ~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                        ......+. ..-...  ..++++++++.|+.+. ..+.|..+|+..........  .......++++.. +.++.+..
T Consensus       152 --G~~~~~~~~~~~~~P--~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~  226 (316)
T 1ijq_A          152 --GVDIYSLVTENIQWP--NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDI  226 (316)
T ss_dssp             --SCCEEEEECSSCSCE--EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEET
T ss_pred             --CCCeEEEEECCCCCc--eEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEEC
Confidence              33333332 112222  3388898877665554 56789999987533222222  1223466777754 45555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.89  E-value=2.6  Score=39.61  Aligned_cols=179  Identities=7%  Similarity=-0.117  Sum_probs=97.6

Q ss_pred             CcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCcE-EEEee-eCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCccc
Q 037288          257 CTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGMA-SWVCR-SKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       257 ~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~~-~~~~~-~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      ..+.+++|++.+. ++.+- ..+.|..+++..+.. ..... .-.....+++.+. ++++++-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            3567899998544 44444 345688899876632 12222 2234678888874 455566566789999998754321


Q ss_pred             cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCc
Q 037288          332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTR  409 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~  409 (513)
                      . +  +.........                                  +++.|.+..|..+.  ..+.|...++.   .
T Consensus       115 ~-l--~~~~~~~P~g----------------------------------iavdp~~g~ly~td~~~~~~I~r~~~d---G  154 (318)
T 3sov_A          115 V-L--FWQELDQPRA----------------------------------IALDPSSGFMYWTDWGEVPKIERAGMD---G  154 (318)
T ss_dssp             E-E--ECSSCSSEEE----------------------------------EEEEGGGTEEEEEECSSSCEEEEEETT---S
T ss_pred             E-E--EeCCCCCccE----------------------------------EEEeCCCCEEEEEecCCCCEEEEEEcC---C
Confidence            1 0  0011111122                                  24555444444444  25778888774   2


Q ss_pred             cceEEe-cCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          410 GAVQSY-EGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       410 ~~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                      .....+ ...-..  ...++++++++.|+.+ ...+.|..+|+.................++++..+..+
T Consensus       155 ~~~~~~~~~~l~~--Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~ly  222 (318)
T 3sov_A          155 SSRFIIINSEIYW--PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY  222 (318)
T ss_dssp             CSCEEEECSSCSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCC--ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEE
Confidence            222233 211112  2348899876666555 45678999998654332222323445667777644333

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.72  E-value=1.6  Score=40.45  Aligned_cols=182  Identities=10%  Similarity=0.033  Sum_probs=88.9

Q ss_pred             CCCEEEEEeC------CeEEEEECCCCcEEEEeeeCC--CeEEEEEecCCcEEEEEeCCC-----eEEEEECCCCccccc
Q 037288          267 NPSQAVIGTN------LGAAMVDMETGMASWVCRSKS--DILAQQVIHSGNVVLCGFRNG-----AIVTVDVRKRQRGCS  333 (513)
Q Consensus       267 ~g~~l~s~s~------~~i~vwd~~~~~~~~~~~~~~--~V~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~  333 (513)
                      ++.+++.|+.      +.+.+||..+.+-...-....  .-.++.. .++.+++.|+.++     .+.+||+.+.+... 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH-  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE-
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee-
Confidence            5666666542      237889988776333322111  1122222 3678888887663     68889998776543 


Q ss_pred             cccccccCcCeEEEeeCC-eEEEeEee--------------cccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC--
Q 037288          334 SRAGRRHRIPYSRLQRND-RVTNEQWF--------------ELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD--  396 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~-~~~s~~w~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d--  396 (513)
                      +..+.........+.+.. .++.|+++              ..............+....++..+  ++.+++.|+.+  
T Consensus       139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~  216 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGP  216 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSS
T ss_pred             cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCC
Confidence            333333333333333444 33334322              221111111011111111222222  67788888764  


Q ss_pred             ---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEE
Q 037288          397 ---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC-----KLRIWSIRSGELV  456 (513)
Q Consensus       397 ---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-----~v~vwd~~~~~~~  456 (513)
                         ..+.+||+.......+..+.........  +.  .++++++.|+.++     .|.+||+.+.+-.
T Consensus       217 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~--~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          217 LVRKSVEVYDPTTNAWRQVADMNMCRRNAGV--CA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             SBCCCEEEEETTTTEEEEECCCSSCCBSCEE--EE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCCEeeCCCCCCccccCeE--EE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence               3688999863222222222111111111  22  2577778887654     4889998877643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.66  E-value=2.7  Score=38.83  Aligned_cols=181  Identities=10%  Similarity=0.020  Sum_probs=89.8

Q ss_pred             CCCEEEEEeC-----CeEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC------CeEEEEECCCCccccc
Q 037288          267 NPSQAVIGTN-----LGAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN------GAIVTVDVRKRQRGCS  333 (513)
Q Consensus       267 ~g~~l~s~s~-----~~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~  333 (513)
                      ++.+++.|+.     +.+.++|+.+++-...-....+  -.++. .-++.+++.|+.+      ..+.+||+.+.+... 
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT-  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-
Confidence            5666666652     3488899988764333221111  11222 2367888888765      568999998876543 


Q ss_pred             cccccccCcCeEEEeeCC-eEEEeEee----------------cccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          334 SRAGRRHRIPYSRLQRND-RVTNEQWF----------------ELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~-~~~s~~w~----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      +..+.........+.+.. .++.|+.+                ..............+..-.++..+  ++++++.|+.+
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence            333333333333333444 33344322                221111111001111111122222  56777777654


Q ss_pred             -----CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeE
Q 037288          397 -----GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGEL  455 (513)
Q Consensus       397 -----g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~  455 (513)
                           ..+.+||+.......+..+.........  +.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC--AAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE--EEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             CCCCCceEEEeeCCCCcEEECCCCCCCccceeE--EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence                 3588899863222222222211111111  222  57788888854     4688999988653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.59  E-value=2  Score=42.99  Aligned_cols=159  Identities=8%  Similarity=-0.004  Sum_probs=87.4

Q ss_pred             cEEEEEEcC-CCCEEEEE-eC-CeEEEEECCCCcEEEEeeeC----CCeEEEEE-------ecCCcEEEEEeCCC-----
Q 037288          258 TVWTADFCT-NPSQAVIG-TN-LGAAMVDMETGMASWVCRSK----SDILAQQV-------IHSGNVVLCGFRNG-----  318 (513)
Q Consensus       258 ~V~~~~~s~-~g~~l~s~-s~-~~i~vwd~~~~~~~~~~~~~----~~V~~l~~-------~~~~~~l~sg~~dg-----  318 (513)
                      ....++|.| +...|..+ .. ..|++.|+.++....+....    .....++|       +++|..|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            567899998 34444444 33 34899999988776655432    24799999       99998666665543     


Q ss_pred             --eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEec
Q 037288          319 --AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSM  395 (513)
Q Consensus       319 --~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~  395 (513)
                        .|.+++........  .....  . .                       .....++   .. +.++| ++.++++-..
T Consensus       220 ~~~V~~i~r~~~G~~~--~~~~~--~-~-----------------------v~~~~~p---~g-iavdp~~g~LYvtd~~  267 (496)
T 3kya_A          220 SPSVYIIKRNADGTFD--DRSDI--Q-L-----------------------IAAYKQC---NG-ATIHPINGELYFNSYE  267 (496)
T ss_dssp             EEEEEEEECCTTSCCS--TTSCE--E-E-----------------------EEEESCC---CC-EEECTTTCCEEEEETT
T ss_pred             CceEEEEecCCCCcee--ecccc--e-e-----------------------eccCCCc---eE-EEEcCCCCeEEEEECC
Confidence              26666633311100  00000  0 0                       0011111   12 25567 4555666667


Q ss_pred             CCeEEEEecC-------CCCc-c---c-----eEE-ecC-CCCceeEEEEEEcCCCCEEEE-EeCCCcEEEEeC
Q 037288          396 DGTVKLYDHR-------LTTR-G---A-----VQS-YEG-HVNSHTRIQLGVDQSERFVMS-GGEDCKLRIWSI  450 (513)
Q Consensus       396 dg~i~lwd~~-------~~~~-~---~-----~~~-~~~-h~~~v~~~~~~~s~~g~~l~s-g~~Dg~v~vwd~  450 (513)
                      ++.|..+|+.       .... .   +     ... +.. .....  ..++|+|+|++|+. =.....|+.++.
T Consensus       268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p--~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          268 KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE--FQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC--EEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCc--eEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            8889999985       1111 0   0     112 211 11222  34899999996544 455678888654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.99  E-value=1.1  Score=41.62  Aligned_cols=171  Identities=13%  Similarity=0.065  Sum_probs=81.9

Q ss_pred             eEEEEECCCCcEEEEeeeCC--CeEEEEEecCCcEEEEEeCC-----CeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288          278 GAAMVDMETGMASWVCRSKS--DILAQQVIHSGNVVLCGFRN-----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN  350 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~--~V~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~  350 (513)
                      .+.++|+.+.+-...-....  .-.++.. -++.+++.|+.+     ..+.+||+.+.+... +..+.........+.+.
T Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~  168 (308)
T 1zgk_A           91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPMLTRRIGVGVAVLN  168 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEET
T ss_pred             eEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeE-CCCCCccccceEEEEEC
Confidence            47788988775332221111  1112222 267788887654     468899998776543 33333333333333344


Q ss_pred             C-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-----CeEEEEecCCCCccce
Q 037288          351 D-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-----GTVKLYDHRLTTRGAV  412 (513)
Q Consensus       351 ~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-----g~i~lwd~~~~~~~~~  412 (513)
                      . .++.|+            ++..............+....++..+  ++.+++.|+.+     ..+.+||+.......+
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            4 333333            22222211111111111111222223  67778888765     4688999863222222


Q ss_pred             EEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 037288          413 QSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGELV  456 (513)
Q Consensus       413 ~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~~  456 (513)
                      ..+........   +.. -++++++.|+.+     ..+.+||+.+.+-.
T Consensus       247 ~~~p~~r~~~~---~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          247 APMKHRRSALG---ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             CCCSSCCBSCE---EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCCCCCccceE---EEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            22221111111   222 257777888754     35788888776543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.92  E-value=1.1  Score=41.35  Aligned_cols=147  Identities=15%  Similarity=0.078  Sum_probs=76.6

Q ss_pred             CCCEEEEEe------CCeEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC-----CeEEEEECCCCccccc
Q 037288          267 NPSQAVIGT------NLGAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN-----GAIVTVDVRKRQRGCS  333 (513)
Q Consensus       267 ~g~~l~s~s------~~~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~  333 (513)
                      ++.+++.|+      .+.+.++|+.+.+-...-....+  -.++.. .++.+++.|+.+     ..+.+||+.+..... 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN-  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE-
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe-
Confidence            566666664      23488899988763332221111  122222 367888888765     457888887765432 


Q ss_pred             cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-----CeEEEEecCCCC
Q 037288          334 SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-----GTVKLYDHRLTT  408 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-----g~i~lwd~~~~~  408 (513)
                      +..+....                                  ...++..+  +++.++.|+.+     ..+.+||+....
T Consensus       190 ~~~~p~~r----------------------------------~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          190 VTPMATKR----------------------------------SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ECCCSSCC----------------------------------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCccc----------------------------------ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            11111000                                  01111122  56777777764     468899986322


Q ss_pred             ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeE
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGEL  455 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~  455 (513)
                      ...+..+.........  +.  -++++++.|+.+     ..|.+||+.+.+-
T Consensus       234 W~~~~~~p~~r~~~~~--~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          234 WTTVTSMTTPRCYVGA--TV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EEEECCCSSCCBSCEE--EE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             EEECCCCCCcccceeE--EE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            2222222111111111  22  257777888765     3578888877653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.88  E-value=0.28  Score=51.94  Aligned_cols=169  Identities=10%  Similarity=-0.089  Sum_probs=90.5

Q ss_pred             EEEEEEcCC-CCEEEEE-eCCeEEEEECCCCcEEEEeee-CCCeEEEEEecCCcEEEEEeC-C-CeEEEEECCCCccccc
Q 037288          259 VWTADFCTN-PSQAVIG-TNLGAAMVDMETGMASWVCRS-KSDILAQQVIHSGNVVLCGFR-N-GAIVTVDVRKRQRGCS  333 (513)
Q Consensus       259 V~~~~~s~~-g~~l~s~-s~~~i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~~-d-g~i~iwd~~~~~~~~~  333 (513)
                      ...+++.+. +.++++- ..+.|.++++.......++.. ......|+++|.+..|+.+.. . +.|..+++....... 
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-
Confidence            456777753 4444433 345699999886655444432 234678888886654544432 2 677777665432211 


Q ss_pred             cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCCccce
Q 037288          334 SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTTRGAV  412 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~~~~~  412 (513)
                      +  +...                              +..+   .. +++++++ .++++-+..+.|..+|+.   ....
T Consensus       534 l--~~~~------------------------------l~~P---nG-lavd~~~~~LY~aD~~~~~I~~~d~d---G~~~  574 (699)
T 1n7d_A          534 L--VTEN------------------------------IQWP---NG-ITLDLLSGRLYWVDSKLHSISSIDVN---GGNR  574 (699)
T ss_dssp             E--SCSS------------------------------CSSC---CC-EEECTTTCCEEEEETTTTEEEEECSS---SSCC
T ss_pred             E--EeCC------------------------------CCCc---cE-EEEeccCCEEEEEecCCCeEEEEccC---CCce
Confidence            0  0000                              0001   11 3566654 444555567789999985   2222


Q ss_pred             EEecC---CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEE
Q 037288          413 QSYEG---HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVC  470 (513)
Q Consensus       413 ~~~~~---h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~  470 (513)
                      ..+..   .......  +++..+ .++++....+.|..++..+++.+..+......+..|+
T Consensus       575 ~~~~~~~~~~~~P~g--lavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~  632 (699)
T 1n7d_A          575 KTILEDEKRLAHPFS--LAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  632 (699)
T ss_dssp             EEECCCSSSCSSCCC--CEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred             EEEEecCCcCCCceE--eEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence            22221   1111112  444443 4555556678999999989998887654333344444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.88  E-value=2.6  Score=42.15  Aligned_cols=146  Identities=8%  Similarity=-0.055  Sum_probs=79.4

Q ss_pred             CeEEEEEecC-C-cEEEEEeCCCeEEEEECCCCcccccccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          298 DILAQQVIHS-G-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       298 ~V~~l~~~~~-~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                      ....|+|+|. + +++++-...+.|++.|+..+.... +.... ........                            
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~----------------------------  190 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRS----------------------------  190 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEE----------------------------
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcE----------------------------
Confidence            3678899983 4 555554445778889988765322 11100 00011222                            


Q ss_pred             CCceEEEEE-------cCCCCEEEEEecCC-------eEEEEecCCCCccce-----EEecCCCCceeEEEEEEcCCC-C
Q 037288          375 SSISCLQSL-------QLYDQYFLASSMDG-------TVKLYDHRLTTRGAV-----QSYEGHVNSHTRIQLGVDQSE-R  434 (513)
Q Consensus       375 ~~v~~~~~~-------~~~~~~l~s~s~dg-------~i~lwd~~~~~~~~~-----~~~~~h~~~v~~~~~~~s~~g-~  434 (513)
                            +++       +++++.|+++...+       .|.+++... .....     ..+.....+   ..++++|++ .
T Consensus       191 ------ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~-~G~~~~~~~~~~v~~~~~p---~giavdp~~g~  260 (496)
T 3kya_A          191 ------IAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA-DGTFDDRSDIQLIAAYKQC---NGATIHPINGE  260 (496)
T ss_dssp             ------EEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT-TSCCSTTSCEEEEEEESCC---CCEEECTTTCC
T ss_pred             ------EEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC-CCceeecccceeeccCCCc---eEEEEcCCCCe
Confidence                  355       77888666666543       266665321 01111     222211111   226778954 4


Q ss_pred             EEEEEeCCCcEEEEeCC-------CCeE-----------EEE-ec-CCCCCeEEEEEcCCCc-eEEeeC
Q 037288          435 FVMSGGEDCKLRIWSIR-------SGEL-----------VFE-DK-FSNSVPSAVCWRTQRS-MGPQIE  482 (513)
Q Consensus       435 ~l~sg~~Dg~v~vwd~~-------~~~~-----------~~~-~~-~~~~~v~~v~~~p~~~-~~~t~~  482 (513)
                      ++++-..++.|..+|+.       ++..           ... +. ........++|+|++. ++++..
T Consensus       261 LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~  329 (496)
T 3kya_A          261 LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI  329 (496)
T ss_dssp             EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence            45566678889999997       5553           112 11 2234578999999975 566544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.84  E-value=3.2  Score=36.52  Aligned_cols=176  Identities=9%  Similarity=-0.033  Sum_probs=90.3

Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS  376 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~  376 (513)
                      ..+..++|+|+|.+.++  .+|.+.-.+..+.....    ..+....|-...         |.                .
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~----W~~s~t~IG~~G---------w~----------------~   89 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN----WMGRAKKIGNGG---------WN----------------Q   89 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC----HHHHCEEEECSC---------GG----------------G
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccc----ccccccEecccc---------cc----------------c
Confidence            35789999999987666  78887776654432211    000000000000         00                0


Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-c--eEEecCC--CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          377 ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-A--VQSYEGH--VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~--~~~~~~h--~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      -. .+.+.++|.+.++  .||.|.-++-...... -  ..+.-+.  =..+.  .+.|+|+|.+.+..  |+.++-+...
T Consensus        90 F~-a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~--~lff~p~G~Lyav~--dg~lyr~~~P  162 (236)
T 1tl2_A           90 FQ-FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFK--FLFFHPNGYLYAVH--GQQFYKALPP  162 (236)
T ss_dssp             CS-EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE--EEEECTTSCEEEEE--TTEEEEECCC
T ss_pred             ce-EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceE--EEEECCCceEEEEe--CCcEEecCCC
Confidence            11 1578889988887  5698888875311111 0  0111111  12333  38899999866555  8875443332


Q ss_pred             CCe------EEEEec-CCCCCeEEEEEcCCCceEEeeCCCeeeeec-cCCcccc---eeeeee-ccceeee
Q 037288          452 SGE------LVFEDK-FSNSVPSAVCWRTQRSMGPQIEGKIHEEFD-LGQRHSW---EAWIGT-QEGLFRM  510 (513)
Q Consensus       452 ~~~------~~~~~~-~~~~~v~~v~~~p~~~~~~t~~~~~~~~~~-~~~~~~~---~~~~gs-~~g~~~~  510 (513)
                      ++.      ....+. ..-...+-+.|.+++.+++..++.+.++.+ .....+|   ...+|+ .=..||+
T Consensus       163 ~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~~g~~Y~~~~p~~~~~~~~~~a~~~g~~~~~~~~~  233 (236)
T 1tl2_A          163 VSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQGGKFYEDYPPSYAYDNWLARAKLIGNGGWDDFRF  233 (236)
T ss_dssp             SSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEEESSGGGEEE
T ss_pred             CCCCcccccccceeccCCcceEEEEEECCCCcEEEEeCCeEEecCCccccCcchhhhccccccCccceEEE
Confidence            111      111111 222235567799998776666776665432 2222222   346676 4444443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=93.61  E-value=4.5  Score=37.43  Aligned_cols=181  Identities=11%  Similarity=-0.018  Sum_probs=93.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeC-Ce--EEEEECCCCcEEEEeeeC--CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          257 CTVWTADFCTNPSQAVIGTN-LG--AAMVDMETGMASWVCRSK--SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~-~~--i~vwd~~~~~~~~~~~~~--~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      .....+++.++|+++++... +.  |..+|..+++...+....  .....++..+++..+++-..++.|.++|...+...
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            46889999999997766533 33  666788888765444322  12344555555555555546899999998754210


Q ss_pred             c-----ccc--cccccCcCeEEEeeCC-eEEEeE--------eeccc-CcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288          332 C-----SSR--AGRRHRIPYSRLQRND-RVTNEQ--------WFELK-ANIWPSHTTFMPSSISCLQSLQLYDQYFLASS  394 (513)
Q Consensus       332 ~-----~~~--~~~~h~~~v~~v~~~~-~~~s~~--------w~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s  394 (513)
                      .     .+.  .....-.....+.... .++...        ++... +.......+........ ++++++|+++++..
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~g-i~vd~dG~l~va~~  230 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDD-FAFDVEGNLYGATH  230 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSS-EEEBTTCCEEEECB
T ss_pred             EEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCC-eEECCCCCEEEEeC
Confidence            0     000  0011111223332111 222221        33322 22211111111111222 36778998877777


Q ss_pred             cCCeEEEEecCCCCccc--eEEecCCCCceeEEEEEEc---CCCCEEEEEeCCC
Q 037288          395 MDGTVKLYDHRLTTRGA--VQSYEGHVNSHTRIQLGVD---QSERFVMSGGEDC  443 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~s---~~g~~l~sg~~Dg  443 (513)
                      ..+.|.++|..   ...  +..+.......++  ++|.   |+++.|+.+...+
T Consensus       231 ~~~~V~~~~~~---G~~~~~~~~~~~~~~p~~--~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          231 IYNSVVRIAPD---RSTTIIAQAEQGVIGSTA--VAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TTCCEEEECTT---CCEEEEECGGGTCTTEEE--EEECCSTTTTTEEEEEECTT
T ss_pred             CCCeEEEECCC---CCEEEEeecccccCCceE--EEEecccCCCCEEEEECCCC
Confidence            78899999863   222  2223222233344  8888   8888777666543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.48  E-value=3.7  Score=38.11  Aligned_cols=69  Identities=10%  Similarity=0.119  Sum_probs=38.7

Q ss_pred             CCCEEEEEec------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCe
Q 037288          386 YDQYFLASSM------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC-----KLRIWSIRSGE  454 (513)
Q Consensus       386 ~~~~l~s~s~------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-----~v~vwd~~~~~  454 (513)
                      +++.++.|+.      -..+.+||+.......+..+.........  +.  -++++++.||.++     .+.+||+.+.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA--TV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE--EE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE--EE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            5667777776      24688899863222222222211111111  22  2577888888765     58899998876


Q ss_pred             EEEE
Q 037288          455 LVFE  458 (513)
Q Consensus       455 ~~~~  458 (513)
                      -...
T Consensus       224 W~~~  227 (315)
T 4asc_A          224 WAPF  227 (315)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.37  E-value=5.6  Score=37.82  Aligned_cols=70  Identities=11%  Similarity=0.060  Sum_probs=47.1

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee------eCCCeEEEEEecC---CcEEEEE-eCC-----CeE
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR------SKSDILAQQVIHS---GNVVLCG-FRN-----GAI  320 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~------~~~~V~~l~~~~~---~~~l~sg-~~d-----g~i  320 (513)
                      -..-+.++|.|+|+++++-..+.|.+++  ++.......      .......|+|+|+   +..|+.+ ..+     +.|
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3456899999999988877777898888  444322211      2345899999998   4444443 332     678


Q ss_pred             EEEECCC
Q 037288          321 VTVDVRK  327 (513)
Q Consensus       321 ~iwd~~~  327 (513)
                      ..++...
T Consensus       108 ~r~~~~~  114 (352)
T 2ism_A          108 VRLRHLG  114 (352)
T ss_dssp             EEEEECS
T ss_pred             EEEEeCC
Confidence            8888764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.26  E-value=3  Score=41.34  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=22.4

Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      ....+++|.|+|+++++-...+.|++++...+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g   58 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence            34678999999987766533347888876544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.07  E-value=9.3  Score=39.52  Aligned_cols=182  Identities=8%  Similarity=-0.100  Sum_probs=94.0

Q ss_pred             CcEEEEEEcCCCCEEEEE--eCCeEEEEECCCCcE-EEEeeeC-CCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccc
Q 037288          257 CTVWTADFCTNPSQAVIG--TNLGAAMVDMETGMA-SWVCRSK-SDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~--s~~~i~vwd~~~~~~-~~~~~~~-~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      ..+..++|++.+..|..+  .++.|..+++..... ..++... .....+++.+.+ +++.+-...+.|.+.++......
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            457899999866655544  345688888875532 2233322 458899999865 45555556789999998765321


Q ss_pred             cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec--CCeEEEEecCCCCc
Q 037288          332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM--DGTVKLYDHRLTTR  409 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~--dg~i~lwd~~~~~~  409 (513)
                      . +  +...-...                                 .. +++.|.+.+|..+..  .+.|...++.   .
T Consensus       120 ~-l--~~~~l~~P---------------------------------~~-Iavdp~~g~ly~tD~g~~~~I~r~~~d---G  159 (619)
T 3s94_A          120 V-L--FWQELDQP---------------------------------RA-IALDPSSGFMYWTDWGEVPKIERAGMD---G  159 (619)
T ss_dssp             E-E--ECSSCSCC---------------------------------CC-EEEETTTTEEEEEECSSSCEEEEEETT---S
T ss_pred             E-E--EeCCCCCC---------------------------------ce-EEEecCCCeEEEeccCCCCEEEEEECC---C
Confidence            1 0  00110111                                 11 355555444444442  3566666663   2


Q ss_pred             cceEEec-CCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          410 GAVQSYE-GHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       410 ~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                      .....+. ..-.....  ++++++++.|+.+ ...+.|...|+.................++++..+ .++.+.
T Consensus       160 ~~~~~l~~~~~~~P~G--lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td  230 (619)
T 3s94_A          160 SSRFIIINSEIYWPNG--LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTD  230 (619)
T ss_dssp             CSCEEEECSSCSSEEE--EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEEC
T ss_pred             CceEEEEeCCCCCCcE--EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEec
Confidence            2222222 12222233  7888876666554 45678999998654433222212222346666666 444444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.06  E-value=13  Score=42.24  Aligned_cols=228  Identities=8%  Similarity=0.083  Sum_probs=119.9

Q ss_pred             cEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEE
Q 037288          225 SIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQV  304 (513)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~  304 (513)
                      .+.+.++.++..+.+ .|+..              -+.-.+|..+.+|.-+..++.|+|+++...+..+....+|.-=.|
T Consensus        49 ~vvIidl~~~~~~~r-rpi~A--------------dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkW  113 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIR-RPISA--------------DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKW  113 (1630)
T ss_pred             eEEEEECCCCCCccc-ccccc--------------hhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEe
Confidence            677788877665522 22222              233457778888877777799999999887777776677766667


Q ss_pred             ecCCcEEEEEeCCCeEEEEECCCCcccccccccccc----CcCeEEEeeCC----eEEEeEeecccCcccceeEeecCC-
Q 037288          305 IHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH----RIPYSRLQRND----RVTNEQWFELKANIWPSHTTFMPS-  375 (513)
Q Consensus       305 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~v~~~~----~~~s~~w~~~~~~~~~~~~~~~~~-  375 (513)
                      -.+..+-+++  +..|+-|++... ..+ .+.+..|    ...|..-..++    .++.|- ....+.+.....+.-.+ 
T Consensus       114 is~~~l~lVT--~~aVyHW~~~~~-s~P-~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi-~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          114 ISLNTVALVT--DNAVYHWSMEGE-SQP-VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI-SAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             cCCCeeEEEc--CCeEEEeccCCC-Ccc-HHHHhcchhcccCeeEEeeeCCCCCeEEEEee-ccCCCcccceeeeeeccc
Confidence            5444433332  578999999652 223 4455555    23333333333    122221 11111111111111000 


Q ss_pred             Cc--------eEEEEE-----cCCCCEEEEEec---CCeEEEEecCCC-Ccc-ce-----EEecCC--CCceeEEEEEEc
Q 037288          376 SI--------SCLQSL-----QLYDQYFLASSM---DGTVKLYDHRLT-TRG-AV-----QSYEGH--VNSHTRIQLGVD  430 (513)
Q Consensus       376 ~v--------~~~~~~-----~~~~~~l~s~s~---dg~i~lwd~~~~-~~~-~~-----~~~~~h--~~~v~~~~~~~s  430 (513)
                      .+        .+-..+     .+....|+.+..   .+.++|.++... ... +.     ..+-..  .+. ..+.+.++
T Consensus       189 ~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D-fpv~~~vs  267 (1630)
T 1xi4_A          189 KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND-FPVAMQIS  267 (1630)
T ss_pred             ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC-cceEEEec
Confidence            00        000000     111223333322   368899888632 111 11     111101  111 11335667


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288          431 QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT  473 (513)
Q Consensus       431 ~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p  473 (513)
                      +.-..+..-..-|.|+++|+.++.++..-+-...+|-..+.+.
T Consensus       268 ~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~  310 (1630)
T 1xi4_A          268 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE  310 (1630)
T ss_pred             cccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCC
Confidence            7777888888899999999999998887655555555444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.03  E-value=4.9  Score=38.30  Aligned_cols=71  Identities=8%  Similarity=0.024  Sum_probs=46.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc-EEEEee----eCCCeEEEEEecC----CcEEEEEeC---C----CeE
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGM-ASWVCR----SKSDILAQQVIHS----GNVVLCGFR---N----GAI  320 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~-~~~~~~----~~~~V~~l~~~~~----~~~l~sg~~---d----g~i  320 (513)
                      ..-+.++|.|+|+++++-.++.|+++|. +++ .+..+.    .......|+|+|+    +.+.++-+.   +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4678999999999888877788988873 454 111111    2345899999997    444443332   3    567


Q ss_pred             EEEECCCC
Q 037288          321 VTVDVRKR  328 (513)
Q Consensus       321 ~iwd~~~~  328 (513)
                      ..|+....
T Consensus       108 ~r~~~~~~  115 (354)
T 3a9g_A          108 IRGRLDGS  115 (354)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            77776543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.01  E-value=9.6  Score=39.51  Aligned_cols=172  Identities=9%  Similarity=-0.044  Sum_probs=99.8

Q ss_pred             CEEEEEeCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEE-EEeCCCeEEEEECCCCccccccccccccCcCeE
Q 037288          269 SQAVIGTNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVL-CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYS  345 (513)
Q Consensus       269 ~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  345 (513)
                      .+|+.+....|+..|+.+......+.  .-..+..|+|++.+..|+ +-..++.|..+++.......   .+.....   
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~---v~~~g~~---   80 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH---VVEFGLD---   80 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EECSSCS---
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE---EEeCCCC---
Confidence            35666667779999998765433333  234688999998765555 44557899999887543211   0000000   


Q ss_pred             EEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-CCEEEEEecCCeEEEEecCCCCccceEEec-CCCCcee
Q 037288          346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRGAVQSYE-GHVNSHT  423 (513)
Q Consensus       346 ~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~-~h~~~v~  423 (513)
                                                    .... +++.+. ++++++-...+.|.+.++.   ......+. ..-... 
T Consensus        81 ------------------------------~P~G-lAvD~~~~~LY~tD~~~~~I~v~~~d---G~~~~~l~~~~l~~P-  125 (628)
T 4a0p_A           81 ------------------------------YPEG-MAVDWLGKNLYWADTGTNRIEVSKLD---GQHRQVLVWKDLDSP-  125 (628)
T ss_dssp             ------------------------------CCCE-EEEETTTTEEEEEETTTTEEEEEETT---STTCEEEECSSCCCE-
T ss_pred             ------------------------------Ccce-EEEEeCCCEEEEEECCCCEEEEEecC---CCcEEEEEeCCCCCc-
Confidence                                          1112 244444 4444555557889999884   33222222 222222 


Q ss_pred             EEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCC
Q 037288          424 RIQLGVDQSERFVMSGGE--DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEG  483 (513)
Q Consensus       424 ~~~~~~s~~g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~  483 (513)
                       ..++++|...+|+....  .+.|...++......... ......+.+++.++ +.++.+...
T Consensus       126 -~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          126 -RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             -EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETT
T ss_pred             -ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECC
Confidence             44888987666665543  567888887655433323 34556889999986 556665543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.89  E-value=2.4  Score=41.32  Aligned_cols=73  Identities=11%  Similarity=0.070  Sum_probs=56.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCeEEEEECCCCc------------EEEEee-------eCCCeEEEEEecCC---cEEEEEe
Q 037288          258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGM------------ASWVCR-------SKSDILAQQVIHSG---NVVLCGF  315 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~------------~~~~~~-------~~~~V~~l~~~~~~---~~l~sg~  315 (513)
                      .|..+..+|+|++||..++.+|.|-.+..+.            ....+.       ...+|..+.|||-+   ..|++-.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            5677999999999999999999888776321            122333       24679999999965   5888889


Q ss_pred             CCCeEEEEECCCCcc
Q 037288          316 RNGAIVTVDVRKRQR  330 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~  330 (513)
                      .|++|++||+.....
T Consensus       147 sD~~Ir~yDl~~s~~  161 (452)
T 3pbp_A          147 EDDTITMFDILNSQE  161 (452)
T ss_dssp             TTSCEEEEETTCTTS
T ss_pred             cCCEEEEEEcccCCC
Confidence            999999999987443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.83  E-value=5.8  Score=36.52  Aligned_cols=181  Identities=9%  Similarity=0.003  Sum_probs=87.3

Q ss_pred             CEEEEEeC---CeEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC----CeEEEEECCCCccccccccccc
Q 037288          269 SQAVIGTN---LGAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN----GAIVTVDVRKRQRGCSSRAGRR  339 (513)
Q Consensus       269 ~~l~s~s~---~~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~  339 (513)
                      .+++.|+.   +.+.+||..+++-...-....+  -.++. ..++.+++.|+.+    ..+.+||+.+.+... +..+..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS-KLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEE-EECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEE-CCCCCc
Confidence            34455542   3588899988763332211111  11222 2367788888765    778999998876543 333333


Q ss_pred             cCcCeEEEeeCC-eEEEeEee-------------cccCcccceeEeecCCCceEEEEEcCCCCEEEEEec---------C
Q 037288          340 HRIPYSRLQRND-RVTNEQWF-------------ELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM---------D  396 (513)
Q Consensus       340 h~~~v~~v~~~~-~~~s~~w~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---------d  396 (513)
                      .......+.+.. .++.|+++             ..............+..-.++..  .++++++.|+.         -
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEEC
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCccccc
Confidence            333333334444 34444432             22211111000111111112222  25677777764         3


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEE
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGELVF  457 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~~~  457 (513)
                      ..+.+||+.......+..+.......   .+.. -++++++.||.+     ..+.+||+.+.+-..
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~---~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  230 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNH---GLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM  230 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSC---EEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEE
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcc---eEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEE
Confidence            45888998632222222221111111   1222 256777777754     368999998876443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.59  E-value=13  Score=39.79  Aligned_cols=185  Identities=8%  Similarity=-0.085  Sum_probs=99.5

Q ss_pred             cccCcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCC----cEEEEee-eCCCeEEEEEecCC-cEEEEEeCCCeEEEEEC
Q 037288          254 SFKCTVWTADFCTNPSQAV-IG-TNLGAAMVDMETG----MASWVCR-SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~----~~~~~~~-~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~  325 (513)
                      .....+..++|.+....|. +- ..+.|+.+++...    ....++. .-.....|++.+.+ +++++-...+.|.+.++
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            3345678899988554444 44 3456888888753    2223333 33446788998877 45555556789999998


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cC-CeEEEEe
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MD-GTVKLYD  403 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~d-g~i~lwd  403 (513)
                      ....... +  +.......                                 .. +++.+...+|..+. .+ +.|...+
T Consensus       501 dG~~~~~-l--~~~~l~~P---------------------------------~g-IaVDp~~g~LYwtD~g~~~~I~~~~  543 (791)
T 3m0c_C          501 KGVKRKT-L--FRENGSKP---------------------------------RA-IVVDPVHGFMYWTDWGTPAKIKKGG  543 (791)
T ss_dssp             TSSSEEE-E--EECTTCCE---------------------------------EE-EEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCCeEEE-E--EeCCCCCc---------------------------------ce-EEEecCCCCEEEecCCCCCeEEEEe
Confidence            7543211 0  00111111                                 22 35555544444444 22 6788888


Q ss_pred             cCCCCccceEEe-cCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecC--CCCCeEEEEEcCCCceEE
Q 037288          404 HRLTTRGAVQSY-EGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKF--SNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       404 ~~~~~~~~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~~  479 (513)
                      +.   ......+ ...-.....  +++++.+..|+.+. ....|...++........+..  .-....+|+...+ .++.
T Consensus       544 ~d---G~~~~~lv~~~l~~P~G--LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYw  617 (791)
T 3m0c_C          544 LN---GVDIYSLVTENIQWPNG--ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFW  617 (791)
T ss_dssp             TT---SCCEEEEECSSCSCEEE--EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEE
T ss_pred             cC---CCceEEEEeCCCCCceE--EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEE
Confidence            74   3333333 222223333  78887776666554 456899999865544333332  1233557777555 4444


Q ss_pred             ee
Q 037288          480 QI  481 (513)
Q Consensus       480 t~  481 (513)
                      +.
T Consensus       618 tD  619 (791)
T 3m0c_C          618 TD  619 (791)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.54  E-value=6.3  Score=36.57  Aligned_cols=185  Identities=9%  Similarity=-0.019  Sum_probs=86.6

Q ss_pred             CCCCEEEEEeC-----C-------eEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC-------CeEEEEE
Q 037288          266 TNPSQAVIGTN-----L-------GAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN-------GAIVTVD  324 (513)
Q Consensus       266 ~~g~~l~s~s~-----~-------~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d-------g~i~iwd  324 (513)
                      .++.+++.|+.     +       .+.++|..+.+-...-....+  -.++.. -++.+++.|+.+       ..+.+||
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEe
Confidence            46677776651     1       166788877653332221111  122222 267788888764       3588899


Q ss_pred             CCCCccccccccccccCcCeEEEeeCC-eEEEeEe-------------ecccCcccceeEeecCCCceEEEEEcCCCCEE
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQW-------------FELKANIWPSHTTFMPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~w-------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  390 (513)
                      +.+.+... +..+.........+.... .++.|++             |..............+....++..+  +++.+
T Consensus       134 ~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy  210 (318)
T 2woz_A          134 PVAAKWSE-VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIV  210 (318)
T ss_dssp             TTTTEEEE-ECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred             CCCCCEeE-CCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEE
Confidence            98776543 333332222222333333 3333432             2222211111111111111122222  57777


Q ss_pred             EEEecC-----CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC--------------CcEEEEeCC
Q 037288          391 LASSMD-----GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED--------------CKLRIWSIR  451 (513)
Q Consensus       391 ~s~s~d-----g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D--------------g~v~vwd~~  451 (513)
                      +.|+.+     ..+.+||+.......+..+.........  +.  .++++++.||.+              ..+.+||+.
T Consensus       211 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  286 (318)
T 2woz_A          211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL--VS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD  286 (318)
T ss_dssp             EEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE--EE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred             EEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE--EE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence            877653     3467888863222222222211111111  22  346777777754              357788888


Q ss_pred             CCeEEEE
Q 037288          452 SGELVFE  458 (513)
Q Consensus       452 ~~~~~~~  458 (513)
                      +.+-...
T Consensus       287 ~~~W~~~  293 (318)
T 2woz_A          287 KKEWAGM  293 (318)
T ss_dssp             TTEEEEE
T ss_pred             CCEehhh
Confidence            7664433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.27  E-value=9.5  Score=37.72  Aligned_cols=52  Identities=10%  Similarity=-0.001  Sum_probs=37.0

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee---------eCCCeEEEEEecC
Q 037288          256 KCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR---------SKSDILAQQVIHS  307 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~---------~~~~V~~l~~~~~  307 (513)
                      -...+.++|.|+|+++++-..+ .|++++..++.......         .....+.|+|+|+
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            3467899999999998887665 58888776665433222         1345779999995

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.17  E-value=2.7  Score=39.95  Aligned_cols=33  Identities=12%  Similarity=0.260  Sum_probs=25.0

Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ  329 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~  329 (513)
                      .....|+|.|||.++++--..|.|++++...+.
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~   64 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR   64 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence            456899999999877666448999998765443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.95  E-value=2.9  Score=39.94  Aligned_cols=28  Identities=14%  Similarity=0.146  Sum_probs=21.5

Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      .....++|.|+|+++ ++..+|.|+++|.
T Consensus        29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~   56 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYL-VTERPGRLVLISP   56 (354)
T ss_dssp             SCEEEEEEEETTEEE-EEETTTEEEEECS
T ss_pred             CCCeEEEEcCCCeEE-EEeCCCEEEEEeC
Confidence            346889999999855 4567799999973

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.75  E-value=3.4  Score=39.17  Aligned_cols=57  Identities=5%  Similarity=0.093  Sum_probs=30.8

Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC------cEEEEeCCCCeEEEE
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC------KLRIWSIRSGELVFE  458 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg------~v~vwd~~~~~~~~~  458 (513)
                      .+.+||+.......+..+........    ++..++++++.||.++      .|.++++++++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGV----SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSE----EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccce----eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            57789987333334444432222211    1224678888888653      466668888876665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.69  E-value=8.7  Score=35.95  Aligned_cols=215  Identities=10%  Similarity=-0.034  Sum_probs=104.0

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEe--e---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVC--R---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~--~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      ..+.++.|.+++..+++|..+.| +...+.|+.-...  .   ....+.+|.|.+ +..+++ +.++.|.. ....++.-
T Consensus        36 ~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW  111 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSW  111 (327)
T ss_dssp             SCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSC
T ss_pred             CcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCc
Confidence            47899999888888887766554 3444444321111  1   133588999986 455544 56675554 22223221


Q ss_pred             cccccccccCcCeEEEeeCC--eEEEeE-----eeccc-CcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288          332 CSSRAGRRHRIPYSRLQRND--RVTNEQ-----WFELK-ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD  403 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~--~~~s~~-----w~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd  403 (513)
                      ..+.....+...+..+.+.+  .++...     |.... +.-+..........+..+ .+.+++.+++++...+..+-.|
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~-~~~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNL-NRSPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEE-EECTTSCEEEEETTSSEEEEEC
T ss_pred             eECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEE-EEcCCCcEEEEECCCcEEEEeC
Confidence            10111112233456666533  322222     22111 211111111123344444 5667777776665443333344


Q ss_pred             cCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC----CCCCeEEEEEcCCCceEE
Q 037288          404 HRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF----SNSVPSAVCWRTQRSMGP  479 (513)
Q Consensus       404 ~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~~  479 (513)
                      -.-.....+.  ......+.  .+.+++++..+ .++.+|.+++.+...++.-..+..    ....+.++++.+++.+++
T Consensus       191 ~gG~tW~~~~--~~~~~~~~--~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~  265 (327)
T 2xbg_A          191 PGQTAWEPHN--RTTSRRLH--NMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL  265 (327)
T ss_dssp             TTCSSCEEEE--CCSSSCEE--EEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred             CCCCceeECC--CCCCCccc--eeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence            2100111221  22333343  37788888755 455678887775333443332221    123478888987765555


Q ss_pred             ee
Q 037288          480 QI  481 (513)
Q Consensus       480 t~  481 (513)
                      ..
T Consensus       266 ~g  267 (327)
T 2xbg_A          266 AG  267 (327)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.46  E-value=9.9  Score=36.17  Aligned_cols=55  Identities=5%  Similarity=0.073  Sum_probs=37.5

Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEeCCC-CeEE--EEecCCCCCeEEEEEcC-CCceEEeeC
Q 037288          427 LGVDQSERFVMSGG-EDCKLRIWSIRS-GELV--FEDKFSNSVPSAVCWRT-QRSMGPQIE  482 (513)
Q Consensus       427 ~~~s~~g~~l~sg~-~Dg~v~vwd~~~-~~~~--~~~~~~~~~v~~v~~~p-~~~~~~t~~  482 (513)
                      ++|+||++.|+.+. ..+.|+.|++.. +++.  ..+. .....-.++..+ ++.+.+++.
T Consensus       226 ia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEE
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEec
Confidence            89999998877654 578899999863 4322  2332 245577888888 477766553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.16  E-value=7.8  Score=36.91  Aligned_cols=84  Identities=6%  Similarity=-0.038  Sum_probs=48.2

Q ss_pred             CCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCCeEE
Q 037288          396 DGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-----------------DCKLRIWSIRSGELV  456 (513)
Q Consensus       396 dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-----------------Dg~v~vwd~~~~~~~  456 (513)
                      +..|.+|++......  .+.++.+. .....-++.++++|++.++...                 .|.|+-+|.  ++. 
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-  213 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-  213 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-
T ss_pred             CCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-
Confidence            567888887632221  44455543 2222345788899988777541                 245555554  332 


Q ss_pred             EEecCCCCCeEEEEEcCCC-ceEEeeCC
Q 037288          457 FEDKFSNSVPSAVCWRTQR-SMGPQIEG  483 (513)
Q Consensus       457 ~~~~~~~~~v~~v~~~p~~-~~~~t~~~  483 (513)
                      ..+...-...+.++|+|++ .++++...
T Consensus       214 ~~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          214 RVVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             EEeecCCcccCcceECCCCCEEEEEeCC
Confidence            2222223457999999995 56665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.05  E-value=3  Score=39.78  Aligned_cols=30  Identities=13%  Similarity=0.155  Sum_probs=22.8

Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .....|+|.|+|+.|+++...|.|++++..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            346899999999834455678999999853

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.78  E-value=3.7  Score=39.07  Aligned_cols=27  Identities=19%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      .....++|.|+|++++ +..+|.|.+++
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE
Confidence            3467999999998554 46779999998

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.68  E-value=4.5  Score=37.57  Aligned_cols=63  Identities=14%  Similarity=-0.085  Sum_probs=35.8

Q ss_pred             CCCEEEEEe----C-----CeEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeC-C-----CeEEEEECCCCc
Q 037288          267 NPSQAVIGT----N-----LGAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFR-N-----GAIVTVDVRKRQ  329 (513)
Q Consensus       267 ~g~~l~s~s----~-----~~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~-d-----g~i~iwd~~~~~  329 (513)
                      ++.+++.|+    +     +.+.++|..+++-...-....+  -.++. ..++.+++.|+. +     ..+.+||+.+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            566666665    1     2388899988753222111111  12222 246778888876 2     468888888765


Q ss_pred             c
Q 037288          330 R  330 (513)
Q Consensus       330 ~  330 (513)
                      .
T Consensus       177 W  177 (315)
T 4asc_A          177 W  177 (315)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.50  E-value=26  Score=39.26  Aligned_cols=61  Identities=7%  Similarity=0.058  Sum_probs=42.3

Q ss_pred             CEEEEEeCCeEEEEECCCCcEEE--EeeeCCCeEEEEEecC------CcEEEEEeC-CCeEEEEECCCCc
Q 037288          269 SQAVIGTNLGAAMVDMETGMASW--VCRSKSDILAQQVIHS------GNVVLCGFR-NGAIVTVDVRKRQ  329 (513)
Q Consensus       269 ~~l~s~s~~~i~vwd~~~~~~~~--~~~~~~~V~~l~~~~~------~~~l~sg~~-dg~i~iwd~~~~~  329 (513)
                      .+++.++++.+.++.+..++...  ...-...|.|+++.|.      +.++++|.. |++|+|+++...+
T Consensus       524 ~~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          524 SQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             SEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            45555555567777776554322  2234567999999863      369999997 9999999998644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.33  E-value=31  Score=38.55  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=40.1

Q ss_pred             CCEEEEEec-CCeEEEEecCCCCccce--EEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEE
Q 037288          387 DQYFLASSM-DGTVKLYDHRLTTRGAV--QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI--RSGELV  456 (513)
Q Consensus       387 ~~~l~s~s~-dg~i~lwd~~~~~~~~~--~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~--~~~~~~  456 (513)
                      +.++++|.. |++|+|+++.  ....+  +.+.+.. ....+.+.--....+|..|-.||.+.-+.+  .+|++.
T Consensus       571 s~~~aVg~~~d~tv~I~sL~--~l~~~~~~~L~~~~-~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~  642 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLP--SFELLHKEMLGGEI-IPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS  642 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETT--TCCEEEEEECCSSC-CEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred             ccEEEEEECCCCEEEEEECC--CCCeEEEEECCCCC-CCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence            578999996 9999999996  33333  2332211 122222222233457889999998765544  456544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.27  E-value=15  Score=34.77  Aligned_cols=76  Identities=16%  Similarity=0.068  Sum_probs=49.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-------eCCCeEEEEEecC----CcEEEEE--eCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-------SKSDILAQQVIHS----GNVVLCG--FRN  317 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-------~~~~V~~l~~~~~----~~~l~sg--~~d  317 (513)
                      +..--..-+.++|.|+|.++++-. .+.|++++..++.......       .......|+|+|+    +.+.++-  ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333345778999999999888886 6779888876665432211       2345799999995    4433322  234


Q ss_pred             CeEEEEECCC
Q 037288          318 GAIVTVDVRK  327 (513)
Q Consensus       318 g~i~iwd~~~  327 (513)
                      ..|.-|.+..
T Consensus       107 ~~v~R~~~~~  116 (347)
T 3das_A          107 NRIVRMLYDE  116 (347)
T ss_dssp             EEEEEEEBCT
T ss_pred             CEEEEEEeCC
Confidence            5566666554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=88.79  E-value=24  Score=36.49  Aligned_cols=182  Identities=8%  Similarity=-0.086  Sum_probs=102.5

Q ss_pred             CcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccc
Q 037288          257 CTVWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRSK-SDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ..+..++|++.+..|. +- .++.|..+++............ .....+++.+.+ ++..+-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            4678999998665554 43 3566888888765544444422 346788888765 455555557889999987543211


Q ss_pred             ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCcc
Q 037288          333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRG  410 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~  410 (513)
                       +  +...-..                                 ... +++.|....|..+.  ..+.|...++.   ..
T Consensus       117 -l--~~~~l~~---------------------------------P~~-iavdp~~G~lY~tD~g~~~~I~r~~~d---G~  156 (628)
T 4a0p_A          117 -L--VWKDLDS---------------------------------PRA-LALDPAEGFMYWTEWGGKPKIDRAAMD---GS  156 (628)
T ss_dssp             -E--ECSSCCC---------------------------------EEE-EEEETTTTEEEEEECSSSCEEEEEETT---SC
T ss_pred             -E--EeCCCCC---------------------------------ccc-EEEccCCCeEEEeCCCCCCEEEEEeCC---CC
Confidence             0  0011111                                 122 35555444444443  25677777774   32


Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      ....+...-...  ..++++++++.|+.+. ..+.|...|+..... ..+........++++..+ .++.|.-
T Consensus       157 ~~~~l~~~~~~P--~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~-~ly~tD~  225 (628)
T 4a0p_A          157 ERTTLVPNVGRA--NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQD-YIYWTDW  225 (628)
T ss_dssp             SCEEEECSCSSE--EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETT-EEEEEET
T ss_pred             ceEEEECCCCCc--ceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECC-EEEEecC
Confidence            222222222222  3388889776666554 467899999866443 233333344567877764 5555553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.13  E-value=5.7  Score=40.08  Aligned_cols=150  Identities=7%  Similarity=-0.004  Sum_probs=81.1

Q ss_pred             eEEEEECCC----C-cEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCccccccccccccCcCeEEEeeCC
Q 037288          278 GAAMVDMET----G-MASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND  351 (513)
Q Consensus       278 ~i~vwd~~~----~-~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~  351 (513)
                      ++.+.|.+.    + .....+........+.++|||++++++ -.+.++.++|++...... -..+......+.+     
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~-~~k~~~~~~~~~a-----  372 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF-AGKLADPRDVIVG-----  372 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH-TTCCSCGGGGEEE-----
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh-hccccCcccceEe-----
Confidence            355555544    2 233334444556778899999766655 458999999987432100 0000001111110     


Q ss_pred             eEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC------C--ccceEEecCCCCcee
Q 037288          352 RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT------T--RGAVQSYEGHVNSHT  423 (513)
Q Consensus       352 ~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~------~--~~~~~~~~~h~~~v~  423 (513)
                                        .....-.... ..|.++|+...+-..|..|..|++...      +  ...+..+..|-++-.
T Consensus       373 ------------------e~e~GlGPlH-t~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH  433 (638)
T 3sbq_A          373 ------------------EPELGLGPLH-TTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH  433 (638)
T ss_dssp             ------------------CCBCCSCEEE-EEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE
T ss_pred             ------------------eccCCCcccE-EEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcc
Confidence                              0111111122 368888866666668999999998521      0  124556666655421


Q ss_pred             EEEE----EEcCCCCEEEEEeC---CCcE----------EEEeCCCC
Q 037288          424 RIQL----GVDQSERFVMSGGE---DCKL----------RIWSIRSG  453 (513)
Q Consensus       424 ~~~~----~~s~~g~~l~sg~~---Dg~v----------~vwd~~~~  453 (513)
                      . ..    .-.++|+||++...   |..+          .+.|+...
T Consensus       434 ~-~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd  479 (638)
T 3sbq_A          434 L-HASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD  479 (638)
T ss_dssp             E-EETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred             c-ccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence            1 11    12578999999754   5543          67777543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=87.13  E-value=11  Score=35.82  Aligned_cols=50  Identities=8%  Similarity=-0.026  Sum_probs=34.6

Q ss_pred             CcEEEEEEcCCCC-EEEEEeCCeEEEEECCCCcEEEEe--------eeCCCeEEEEEecC
Q 037288          257 CTVWTADFCTNPS-QAVIGTNLGAAMVDMETGMASWVC--------RSKSDILAQQVIHS  307 (513)
Q Consensus       257 ~~V~~~~~s~~g~-~l~s~s~~~i~vwd~~~~~~~~~~--------~~~~~V~~l~~~~~  307 (513)
                      ..-+.++|.|+|+ ++++-..+.|++++.. +.....+        ........|+|+|+
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence            4678999999999 8877777789888853 3321111        12335789999995

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.55  E-value=13  Score=39.03  Aligned_cols=151  Identities=13%  Similarity=0.088  Sum_probs=80.0

Q ss_pred             CCCCEEEEEeC-----CeEEEEECCCCcEEEEe-e-----eCC--CeEEEEEec-CCcEEEEEeCC------CeEEEEEC
Q 037288          266 TNPSQAVIGTN-----LGAAMVDMETGMASWVC-R-----SKS--DILAQQVIH-SGNVVLCGFRN------GAIVTVDV  325 (513)
Q Consensus       266 ~~g~~l~s~s~-----~~i~vwd~~~~~~~~~~-~-----~~~--~V~~l~~~~-~~~~l~sg~~d------g~i~iwd~  325 (513)
                      .++.+++.|+.     +.+.+||..+++-...- .     ...  .-.++.... ++.+++.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            46667776653     23788998887643332 1     111  123333333 77888888754      35778888


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC--eEEEEe
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG--TVKLYD  403 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg--~i~lwd  403 (513)
                      .+..... +..+...                                  ..-.+...+ .++..++.|+.++  .+.+||
T Consensus       476 ~t~~W~~-~~~~p~~----------------------------------R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd  519 (695)
T 2zwa_A          476 KTREWSM-IKSLSHT----------------------------------RFRHSACSL-PDGNVLILGGVTEGPAMLLYN  519 (695)
T ss_dssp             TTTEEEE-CCCCSBC----------------------------------CBSCEEEEC-TTSCEEEECCBCSSCSEEEEE
T ss_pred             CCCcEEE-CCCCCCC----------------------------------cccceEEEE-cCCEEEEECCCCCCCCEEEEE
Confidence            7765432 1111100                                  000111121 3778888888755  689999


Q ss_pred             cCCCCccceEE---ecCCCCceeEEEEEEcCC-CCEEEEEeC--C-----CcEEEEeCCCCe
Q 037288          404 HRLTTRGAVQS---YEGHVNSHTRIQLGVDQS-ERFVMSGGE--D-----CKLRIWSIRSGE  454 (513)
Q Consensus       404 ~~~~~~~~~~~---~~~h~~~v~~~~~~~s~~-g~~l~sg~~--D-----g~v~vwd~~~~~  454 (513)
                      ........+..   +.........  +.++.+ +++++.||.  +     ..+.+||+.+.+
T Consensus       520 ~~t~~W~~~~~~g~~p~~r~~~~a--~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          520 VTEEIFKDVTPKDEFFQNSLVSAG--LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTTTEEEECCCSSGGGGSCCBSCE--EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCceEEccCCCCCCCcccceeE--EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            86322222221   1111111111  344555 667777776  2     358899998876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=82.58  E-value=26  Score=32.81  Aligned_cols=65  Identities=8%  Similarity=-0.055  Sum_probs=36.7

Q ss_pred             CCCEEEEEe--CCeEEEEECCC--CcEEEEeeeC--CC-eEEEEEecCCcEEEEEeC-C---------CeEEEEECCCCc
Q 037288          267 NPSQAVIGT--NLGAAMVDMET--GMASWVCRSK--SD-ILAQQVIHSGNVVLCGFR-N---------GAIVTVDVRKRQ  329 (513)
Q Consensus       267 ~g~~l~s~s--~~~i~vwd~~~--~~~~~~~~~~--~~-V~~l~~~~~~~~l~sg~~-d---------g~i~iwd~~~~~  329 (513)
                      ++.+++.|+  .+.+.++|+.+  .+-...-...  .. -.+++. -++.+++.|+. +         ..+.+||+.+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            666666664  23488899874  3322111111  11 122222 36777777776 2         478999998876


Q ss_pred             ccc
Q 037288          330 RGC  332 (513)
Q Consensus       330 ~~~  332 (513)
                      ...
T Consensus        98 W~~  100 (357)
T 2uvk_A           98 WVK  100 (357)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=80.08  E-value=4.1  Score=38.56  Aligned_cols=63  Identities=14%  Similarity=0.202  Sum_probs=40.6

Q ss_pred             CCCEEEEEeCCeEEEEECCCCcEEEEeeeC--CCeEEEEEe--c-CCcEEEEE-eCCCeEEEEECCCCc
Q 037288          267 NPSQAVIGTNLGAAMVDMETGMASWVCRSK--SDILAQQVI--H-SGNVVLCG-FRNGAIVTVDVRKRQ  329 (513)
Q Consensus       267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~--~~V~~l~~~--~-~~~~l~sg-~~dg~i~iwd~~~~~  329 (513)
                      ++..++...|+.|..+|..+|+..+.+...  .++....-.  + ++..++.. +.||.+..+|..++.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~   78 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL   78 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence            344555556778999999999999988754  333322100  1 22344343 589999999987664

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=80.05  E-value=31  Score=36.14  Aligned_cols=65  Identities=20%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             CCCEEEEEeC-------CeEEEEECCCCcEEEEeeeC--CCeEEEEEecCCcEEEEEeCCC--eEEEEECCCCccc
Q 037288          267 NPSQAVIGTN-------LGAAMVDMETGMASWVCRSK--SDILAQQVIHSGNVVLCGFRNG--AIVTVDVRKRQRG  331 (513)
Q Consensus       267 ~g~~l~s~s~-------~~i~vwd~~~~~~~~~~~~~--~~V~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~  331 (513)
                      ++.+++.|+.       +.+.+||..+.+-...-...  ..-.+.....++.+++.|+.++  .+.+||+.+....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~  526 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK  526 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence            6777776642       23778898876532221111  1112333324788888888765  6899999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	513
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 331 GCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYF 390
             + +  R   +     +   R        +      S+++   ++ S  +       + 
Sbjct: 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 220

Query: 391 LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI 450
           L+ S D T+K++D    T   + +  GH N    +        +F++S  +D  LR+W  
Sbjct: 221 LSGSRDKTIKMWDVS--TGMCLMTLVGHDNWVRGVL--FHSGGKFILSCADDKTLRVWDY 276

Query: 451 RSGELVFEDKFSNSVPSAVCW 471
           ++   +          +++ +
Sbjct: 277 KNKRCMKTLNAHEHFVTSLDF 297

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 10/62 (16%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446
            ++ L+ + D T++++D     +  +++   H +  T +     ++  +V++G  D  ++
Sbjct: 259 GKFILSCADDKTLRVWD--YKNKRCMKTLNAHEHFVTSLD--FHKTAPYVVTGSVDQTVK 314

Query: 447 IW 448
           +W
Sbjct: 315 VW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 2/101 (1%)

Query: 412 VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCW 471
             +  GH +  TR+          ++S  ED  +++W   +G+     K        + +
Sbjct: 10  KYALSGHRSPVTRVI--FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 472 RTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMNW 512
                +       +  +    Q       +   +       
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 108

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405
           +L       N+   +   +     T           +    D+Y L+ S D  V  +D +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 406 LTTRGAVQSYEGHVNSHTRIQLGVDQS----ERFVMSGGEDCKLRIWSIR 451
             +   +   +GH NS   + +    S         +G  DCK RIW  +
Sbjct: 339 --SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 388 QYFLASSMDGTVKLYDHR--------LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG 439
           Q  ++ S+D +VKL++ +         T            +    + +   Q++ +++SG
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 440 GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP 479
            +D  +  W  +SG  +   +   +   +V      S+GP
Sbjct: 327 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 21/171 (12%), Positives = 40/171 (23%), Gaps = 3/171 (1%)

Query: 281 MVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH 340
                              +      S           +       K+            
Sbjct: 157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 216

Query: 341 RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK 400
              +     +DR  +    +    +        P          L  Q F     D T++
Sbjct: 217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276

Query: 401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVD-QSERFVMSGGEDCKLRIWSI 450
           ++D  +TT   VQ +          Q+GV       ++S   D  L  + +
Sbjct: 277 VWD--VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR 409
           +D             +       +   I+ + S     +  LA   D    ++D      
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSV-SFSKSGRLLLAGYDDFNCNVWD--ALKA 302

Query: 410 GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449
                  GH N  + + +  D     V +G  D  L+IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDG--MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI 447
             F   S D T +L+D R        S++  +   T +     +S R +++G +D    +
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF--SKSGRLLLAGYDDFNCNV 296

Query: 448 WSIRSGELVFEDKFSNSVPSAVCW 471
           W     +        ++  S +  
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGV 320

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 11/109 (10%), Positives = 30/109 (27%), Gaps = 3/109 (2%)

Query: 340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399
                               +       S      S      +         ++S D T+
Sbjct: 203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 262

Query: 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448
           K+++  + T    ++           QLG+  +++ ++S   +  +   
Sbjct: 263 KIWN--VATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 3/146 (2%)

Query: 368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL 427
           ++ +F+   ISC  +             +  V +Y+        V   + H    T +  
Sbjct: 1   AYHSFLVEPISCH-AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59

Query: 428 GVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE 487
             D     +++ G D    +W+++               +A C R   +      G    
Sbjct: 60  APD--SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 117

Query: 488 EFDLGQRHSWEAWIGTQEGLFRMNWS 513
              +        W   +     +  +
Sbjct: 118 VISICYFEQENDWWVCKHIKKPIRST 143

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI 425
             +    +    S    ++L D   ++ + D TVK++D +              N H   
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC---LQTLQGPNKHQSA 262

Query: 426 QLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
              +  ++ FV++  +D  +++W +++GE +
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446
            ++F+++  D  +  +    T  GA        +S     + VD  ++++++G  D K  
Sbjct: 277 GKWFVSTGKDNLLNAWR---TPYGASIFQSKESSSVLSCDISVD--DKYIVTGSGDKKAT 331

Query: 447 IWSI 450
           ++ +
Sbjct: 332 VYEV 335

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 9e-04
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 382 SLQLYDQYFLASSMDGTVKLYDHR---------LTTRGAVQSYEGHVNSHTRIQLGVDQS 432
           S+   + + ++ S DG +K++D++          +    V     H     +        
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 433 ERFVMSGGEDCKLRIWSIRSGE 454
              V +      L  + I   +
Sbjct: 79  LCLVATTSFSGDLLFYRITRED 100

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 2/194 (1%)

Query: 257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR 316
                 D         I       + ++     S      +D     V    + V     
Sbjct: 106 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 165

Query: 317 NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS 376
           +GA V+           +     +   +       R            +  +++    ++
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225

Query: 377 ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV 436
                S    +      S+D +V +++    +   +     H  S     + ++  E  +
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTI 283

Query: 437 MSGGEDCKLRIWSI 450
           +S G+D  ++ W++
Sbjct: 284 VSAGQDSNIKFWNV 297

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 8/94 (8%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE 416
           +           +      +       ++ +      S+D  + +Y  +      +++  
Sbjct: 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK-RPMKIIKALN 255

Query: 417 GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI 450
            H +    +      +   ++S G D  ++ W++
Sbjct: 256 AHKDGVNNLLWETPST---LVSSGADACIKRWNV 286

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	513
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.79
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.76
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.61
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.58
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.57
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.51
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.48
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.46
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.46
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.42
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.41
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.38
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.24
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.12
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.1
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.79
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.76
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.58
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.38
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.35
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.34
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.34
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.24
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.06
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.91
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.79
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.73
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.5
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.33
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.66
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.87
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.71
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.14
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.3
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.02
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.19
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.29
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.05
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.56
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.56
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.17
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.32
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.2
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.75
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.93
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	81.89
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	80.93

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-28  Score=233.19  Aligned_cols=209  Identities=11%  Similarity=0.097  Sum_probs=170.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V  299 (513)
                      .+|.+.+|++......          ....+.+|...|.+++|+|++.++++++.+ .|++||+.++++..... |...|
T Consensus       117 ~dg~i~iwd~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v  186 (337)
T d1gxra_         117 EASTLSIWDLAAPTPR----------IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             SSSEEEEEECCCC--E----------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             cccccccccccccccc----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4788888887633221          245578899999999999999999988654 59999999998766655 77889


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC  379 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~  379 (513)
                      .+++|++++..+++|+.|+.|++||+++++...    ...|...|.+                                 
T Consensus       187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~----~~~~~~~i~~---------------------------------  229 (337)
T d1gxra_         187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ----QHDFTSQIFS---------------------------------  229 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEE---------------------------------
T ss_pred             ccccccccccccccccccccccccccccceeec----ccccccceEE---------------------------------
Confidence            999999999999999999999999999876422    1123344444                                 


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288          380 LQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED  459 (513)
Q Consensus       380 ~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~  459 (513)
                      + .++|++++|++++.|+.|++||++  . ........|...+..  ++|+|++++|++|+.||.|++||+.+++++..+
T Consensus       230 l-~~~~~~~~l~~~~~d~~i~i~d~~--~-~~~~~~~~~~~~i~~--v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         230 L-GYCPTGEWLAVGMESSNVEVLHVN--K-PDKYQLHLHESCVLS--LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             E-EECTTSSEEEEEETTSCEEEEETT--S-SCEEEECCCSSCEEE--EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             E-EEcccccccceecccccccccccc--c-cccccccccccccce--EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc
Confidence            3 567799999999999999999996  3 334456779988877  899999999999999999999999999999887


Q ss_pred             cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          460 KFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       460 ~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      . |...|++++|+|++.++++++.|
T Consensus       304 ~-~~~~v~~~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         304 K-ESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             E-CSSCEEEEEECTTSCEEEEEETT
T ss_pred             c-CCCCEEEEEEeCCCCEEEEEeCC
Confidence            6 46789999999998888887765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.2e-28  Score=229.80  Aligned_cols=215  Identities=13%  Similarity=0.126  Sum_probs=175.8

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...+.+|...+.++.+++++..+++++. +.+++||+.+++....+. |...+.+++|++++++|++|+.|+.|++|++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1          94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec
Confidence            4457789999999999999999998865 559999999998877666 77789999999999999999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL  406 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~  406 (513)
                      ....   ...+.+|...+.++.|.+             ............... ......+.++++++.|+.|++||++ 
T Consensus       174 ~~~~---~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~-  235 (317)
T d1vyhc1         174 TKEC---KAELREHRHVVECISWAP-------------ESSYSSISEATGSET-KKSGKPGPFLLSGSRDKTIKMWDVS-  235 (317)
T ss_dssp             TCCE---EEEECCCSSCEEEEEECC-------------SCGGGGGGGCCSCC--------CCEEEEEETTSEEEEEETT-
T ss_pred             ccee---eEEEecCCCCceEEEEee-------------ccccceeecccccee-eeeccCCceeEeccCCCEEEEEECC-
Confidence            8876   447889999999999876             000000001111111 2334568899999999999999997 


Q ss_pred             CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       ...++.++.+|.+.+..  ++++|++++|++|+.||.|++||+.+++++.++..|...|++++|+|++.++++++.|
T Consensus       236 -~~~~~~~~~~~~~~v~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         236 -TGMCLMTLVGHDNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             -TTEEEEEEECCSSCEEE--EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             -CCcEEEEEeCCCCCEEE--EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence             55688999999999877  8899999999999999999999999999999999999999999999998888887766

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=5.9e-27  Score=224.67  Aligned_cols=238  Identities=10%  Similarity=0.049  Sum_probs=184.4

Q ss_pred             ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEE--EEe-eeCCCe
Q 037288          224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMAS--WVC-RSKSDI  299 (513)
Q Consensus       224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~--~~~-~~~~~V  299 (513)
                      +.+.+|++.++..            ...+.+|...|.+++|+|+|++||+|+ |+.|++||+.++...  ..+ .|...|
T Consensus        38 ~~v~i~~~~~~~~------------~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  105 (311)
T d1nr0a1          38 TSVYTVPVGSLTD------------TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV  105 (311)
T ss_dssp             TEEEEEETTCSSC------------CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE
T ss_pred             CEEEEEECCCCce------------eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcc
Confidence            4566677664333            345789999999999999999999886 556999999887632  333 378889


Q ss_pred             EEEEEecCCcEEEEEeC--CCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCccc
Q 037288          300 LAQQVIHSGNVVLCGFR--NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIW  366 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~  366 (513)
                      .+++|+|++++|++++.  +..+++||+.+.+.   ...+.+|...|.+++|+|    .+++|+       |+...++..
T Consensus       106 ~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~---~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         106 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTS---NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  182 (311)
T ss_dssp             EEEEECTTSCEEEEEECCSSCSEEEEETTTCCB---CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             ccccccccccccccccccccccccccccccccc---cccccccccccccccccccceeeecccccccccccccccccccc
Confidence            99999999999998875  46699999998876   448899999999999998    466666       887765532


Q ss_pred             ceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe-------cCCCCceeEEEEEEcCCCCEEEE
Q 037288          367 PSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY-------EGHVNSHTRIQLGVDQSERFVMS  438 (513)
Q Consensus       367 ~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-------~~h~~~v~~~~~~~s~~g~~l~s  438 (513)
                        .... +...+.++ .++|++++|++++.|+.|++||++  ....+..+       .+|...|+.  ++|+|++++|++
T Consensus       183 --~~~~~~~~~i~~v-~~~p~~~~l~~~~~d~~v~~~d~~--~~~~~~~~~~~~~~~~~h~~~V~~--~~~s~~~~~l~t  255 (311)
T d1nr0a1         183 --STFGEHTKFVHSV-RYNPDGSLFASTGGDGTIVLYNGV--DGTKTGVFEDDSLKNVAHSGSVFG--LTWSPDGTKIAS  255 (311)
T ss_dssp             --EEECCCSSCEEEE-EECTTSSEEEEEETTSCEEEEETT--TCCEEEECBCTTSSSCSSSSCEEE--EEECTTSSEEEE
T ss_pred             --ccccccccccccc-ccCccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCEEEE
Confidence              2332 34556665 788999999999999999999997  43344444       368888877  899999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEecCCCC---CeEEEEEcCCCceEEeeCC
Q 037288          439 GGEDCKLRIWSIRSGELVFEDKFSNS---VPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       439 g~~Dg~v~vwd~~~~~~~~~~~~~~~---~v~~v~~~p~~~~~~t~~~  483 (513)
                      |+.||.|+|||+++++++.++..+..   .+.++.|+++..+.++.++
T Consensus       256 gs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG  303 (311)
T d1nr0a1         256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  303 (311)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             EeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCC
Confidence            99999999999999999999876543   3566777766544444333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.4e-26  Score=223.01  Aligned_cols=230  Identities=16%  Similarity=0.135  Sum_probs=179.2

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ...+|.||.+.|++++|+|++.+|++|+. +.|+|||+.+++.+..+. |...|.+++|+|+++++++|+.|+.+.+|+.
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            45679999999999999999999999875 569999999999887776 7778999999999999999999999999997


Q ss_pred             CCCcccc-ccccccccCcCe-----------------------------------------EEEeeCC---eEEEeE---
Q 037288          326 RKRQRGC-SSRAGRRHRIPY-----------------------------------------SRLQRND---RVTNEQ---  357 (513)
Q Consensus       326 ~~~~~~~-~~~~~~~h~~~v-----------------------------------------~~v~~~~---~~~s~~---  357 (513)
                      ....... ....+.+|....                                         ....+.+   .++++.   
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence            6554321 012333343322                                         2222222   333443   


Q ss_pred             ----eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec--CCCCceeEEEEEEc
Q 037288          358 ----WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE--GHVNSHTRIQLGVD  430 (513)
Q Consensus       358 ----w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~--~h~~~v~~~~~~~s  430 (513)
                          |+...+...  ..+. +...+.++ .++|++++|++|+.||.|++||++  ....+..+.  .|...+..  ++|+
T Consensus       207 ~v~i~d~~~~~~~--~~~~~h~~~i~~v-~~~p~~~~l~s~s~d~~i~~~~~~--~~~~~~~~~~~~~~~~i~~--~~~s  279 (340)
T d1tbga_         207 SAKLWDVREGMCR--QTFTGHESDINAI-CFFPNGNAFATGSDDATCRLFDLR--ADQELMTYSHDNIICGITS--VSFS  279 (340)
T ss_dssp             EEEEEETTTTEEE--EEECCCSSCEEEE-EECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCTTCCSCEEE--EEEC
T ss_pred             eEEEEECCCCcEE--EEEeCCCCCeEEE-EECCCCCEEEEEeCCCeEEEEeec--ccccccccccccccCceEE--EEEC
Confidence                776665532  2333 45566665 788999999999999999999997  444555553  45555555  8999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          431 QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       431 ~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      |++++|++|+.||.|++||+.+++++..+..|.++|++++|+|++.+++|++.|
T Consensus       280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence            999999999999999999999999999999999999999999998888877665

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=2.3e-27  Score=233.37  Aligned_cols=224  Identities=9%  Similarity=-0.021  Sum_probs=182.5

Q ss_pred             CcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCc--EEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288          257 CTVWTADFCTNPSQAVIGTNL-GAAMVDMETGM--ASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~--~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      ++|.|++|+|+|++||+|+.+ .|+|||+.+++  .+..+ .|.++|.+++|+|++++|++|+.|++|++||+.+.....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            689999999999999988765 59999998876  34444 388899999999999999999999999999998776544


Q ss_pred             ccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeE--e-ecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288          333 SSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHT--T-FMPSSISCLQSLQLYDQYFLASSMDGTV  399 (513)
Q Consensus       333 ~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i  399 (513)
                       ...+.+|...|.+++|+|   .+++++       |+...........  . .+...+.++ .|+|++++|++|+.|+.|
T Consensus        88 -~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v-~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          88 -TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL-DWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             -EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE-EECTTSSEEEEEETTSCE
T ss_pred             -ccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccc-cccccccceeccccCcEE
Confidence             556788999999999998   677766       6655443321111  1 234566665 779999999999999999


Q ss_pred             EEEecCCCC----------------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC
Q 037288          400 KLYDHRLTT----------------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN  463 (513)
Q Consensus       400 ~lwd~~~~~----------------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~  463 (513)
                      ++||+....                ...+....+|...+..  ++|+|+|++|++++.|+.|++||+.+++.+..+..|.
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG--VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE--EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEE--EEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence            999985321                1134566778888776  8999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCceEEeeCCC
Q 037288          464 SVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       464 ~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      .+|.+++|+|++.+++++..+
T Consensus       244 ~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         244 LPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             CCEEEEEEEETTEEEEEETTS
T ss_pred             ccceeeeecCCCCEEEEEcCC
Confidence            999999999999888876543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-26  Score=220.66  Aligned_cols=224  Identities=10%  Similarity=0.054  Sum_probs=181.7

Q ss_pred             ccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcE---E---EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          253 ASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMA---S---WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       253 ~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~---~---~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      .+|...|.+++|+|+|++|++|+|+.|+|||+.++..   .   ....|.+.|.+++|+|++++|++|+.||.|++||+.
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            3899999999999999999999998899999976531   1   122477889999999999999999999999999998


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      ...... ...+..|...+..+.|++   .+++++       |+...+... .....+...+.++ .+++++..+++++.|
T Consensus       128 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~-~~~~~~~~~v~~l-~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         128 APTPRI-KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTDGASCI-DISNDGTKLWTGGLD  204 (337)
T ss_dssp             CC--EE-EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEE-EECTTSSEEEEEETT
T ss_pred             cccccc-ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccc
Confidence            765443 557788999999999998   566665       777665532 1222345566665 788999999999999


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      +.|++||++  ....+..+. |...+..  ++|+|++++|++|+.|+.|++||+.+++.... ..|...|++++|+|++.
T Consensus       205 ~~v~i~d~~--~~~~~~~~~-~~~~i~~--l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         205 NTVRSWDLR--EGRQLQQHD-FTSQIFS--LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             SEEEEEETT--TTEEEEEEE-CSSCEEE--EEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEEECTTSS
T ss_pred             ccccccccc--cceeecccc-cccceEE--EEEcccccccceeccccccccccccccccccc-cccccccceEEECCCCC
Confidence            999999997  444666664 7777766  88999999999999999999999999987654 56788899999999988


Q ss_pred             eEEeeCCCe
Q 037288          477 MGPQIEGKI  485 (513)
Q Consensus       477 ~~~t~~~~~  485 (513)
                      ++++++.|-
T Consensus       279 ~l~s~s~Dg  287 (337)
T d1gxra_         279 WFVSTGKDN  287 (337)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEeCCC
Confidence            888776653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.3e-26  Score=222.36  Aligned_cols=223  Identities=9%  Similarity=0.045  Sum_probs=184.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc
Q 037288          255 FKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS  333 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  333 (513)
                      +.+.+..++++|+|+.|+.++++.+.+||+.++.....+ .|...|++++|+|+|++|++|+.||+|++||+....... 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-
Confidence            334567889999999999999889999999988766655 488899999999999999999999999999999887544 


Q ss_pred             cccccccCcCeEEEeeCC---eEEEeE---------eecccCcccceeEe-ecCCCceEEEEEcCCCCE-EEEEecCCeE
Q 037288          334 SRAGRRHRIPYSRLQRND---RVTNEQ---------WFELKANIWPSHTT-FMPSSISCLQSLQLYDQY-FLASSMDGTV  399 (513)
Q Consensus       334 ~~~~~~h~~~v~~v~~~~---~~~s~~---------w~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~-l~s~s~dg~i  399 (513)
                      ...+.+|..+|.+++|++   .+++++         |+...++..  ..+ .+...|.++ .|+|++++ |++|+.|+.|
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~--~~l~~h~~~v~~v-~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN--GNLTGQARAMNSV-DFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC--BCCCCCSSCEEEE-EECSSSSCEEEEEETTSCE
T ss_pred             ccccccccCcccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccccceeeeccccccccc
Confidence            346789999999999999   566554         665554432  222 244567775 67888875 7889999999


Q ss_pred             EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------CCCCCeEEEEEc
Q 037288          400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK-------FSNSVPSAVCWR  472 (513)
Q Consensus       400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~-------~~~~~v~~v~~~  472 (513)
                      ++||++  .......+.+|...+.+  +.++|++++|++|+.|+.|++||+.+++.+..+.       .|...|++++|+
T Consensus       172 ~i~d~~--~~~~~~~~~~~~~~i~~--v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  247 (311)
T d1nr0a1         172 AIFEGP--PFKFKSTFGEHTKFVHS--VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS  247 (311)
T ss_dssp             EEEETT--TBEEEEEECCCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             cccccc--ccccccccccccccccc--cccCccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            999997  55588888999999877  8899999999999999999999999999888753       467789999999


Q ss_pred             CCCceEEeeCCCe
Q 037288          473 TQRSMGPQIEGKI  485 (513)
Q Consensus       473 p~~~~~~t~~~~~  485 (513)
                      |++.++++++.|-
T Consensus       248 ~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         248 PDGTKIASASADK  260 (311)
T ss_dssp             TTSSEEEEEETTS
T ss_pred             CCCCEEEEEeCCC
Confidence            9988888887654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-25  Score=221.91  Aligned_cols=227  Identities=15%  Similarity=0.133  Sum_probs=181.8

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-------------------eCCCeEEEEEecCCcE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-------------------SKSDILAQQVIHSGNV  310 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-------------------~~~~V~~l~~~~~~~~  310 (513)
                      ....+|.+.|+|++|+|+|++||+|+|+.|+|||+.+++.+..+.                   |...|.+++|+|++++
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            345579999999999999999999999999999999987665442                   4456999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEE
Q 037288          311 VLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCL  380 (513)
Q Consensus       311 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~  380 (513)
                      |++|+.||.|++||...++.   +..+.+|...|.++++++   .+++++       |+......  ...........++
T Consensus       136 l~s~~~dg~v~i~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~  210 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKI---VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTV  210 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEE
T ss_pred             ceeccccccccccccccccc---ccccccccccccccccccccccccccccceeeeeeecccccc--ccccccccccccc
Confidence            99999999999999998876   447889999999999998   566655       77765543  3344556667777


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEecCCCCccceEE-------ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288          381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS-------YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG  453 (513)
Q Consensus       381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~-------~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~  453 (513)
                      ..+++++++|++|+.||.|++||++  ....+..       ..+|.+.|..  ++|+|++++|++|+.||.|++||+.++
T Consensus       211 ~~~~~~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~~~~h~~~v~~--l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         211 AVSPGDGKYIAAGSLDRAVRVWDSE--TGFLVERLDSENESGTGHKDSVYS--VVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EECSTTCCEEEEEETTSCEEEEETT--TCCEEEEEC------CCCSSCEEE--EEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             cccCCCCCeEEEEcCCCeEEEeecc--cCccceeeccccccccCCCCCEEE--EEECCCCCEEEEEECCCcEEEEeccCC
Confidence            7788899999999999999999997  3333333       3468888877  899999999999999999999999765


Q ss_pred             eE------------EEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288          454 EL------------VFEDKFSNSVPSAVCWRTQRSMGPQIEGKI  485 (513)
Q Consensus       454 ~~------------~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~  485 (513)
                      +.            ......|...|++++|+|++.++++++.|-
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg  330 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  330 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence            43            334556788899999999987777776653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.1e-26  Score=223.44  Aligned_cols=215  Identities=16%  Similarity=0.232  Sum_probs=168.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEeeeCCCeE
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCRSKSDIL  300 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~~~~~V~  300 (513)
                      .+|.+.+|+....            ..+....+|...|.++++++++..+++++.+ .+++||..+........+.....
T Consensus       141 ~dg~v~i~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  208 (388)
T d1erja_         141 EDRLIRIWDIENR------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT  208 (388)
T ss_dssp             TTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred             ccccccccccccc------------ccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccc
Confidence            5677877776532            2355688999999999999999999888654 59999999998888777777777


Q ss_pred             EEEEec-CCcEEEEEeCCCeEEEEECCCCccccc----cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC
Q 037288          301 AQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCS----SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS  375 (513)
Q Consensus       301 ~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~  375 (513)
                      ++.+++ ++++|++|+.||.|++||+++......    .....+|..+|.++                            
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l----------------------------  260 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV----------------------------  260 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE----------------------------
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEE----------------------------
Confidence            777765 789999999999999999988765321    11233455555553                            


Q ss_pred             CceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc----------cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288          376 SISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR----------GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKL  445 (513)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~----------~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v  445 (513)
                            .+++++++|++++.||.|++||++....          ........|...+..  ++|+|++++|++|+.||.|
T Consensus       261 ------~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~sg~~dg~i  332 (388)
T d1erja_         261 ------VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS--VATTQNDEYILSGSKDRGV  332 (388)
T ss_dssp             ------EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE--EEECGGGCEEEEEETTSEE
T ss_pred             ------EECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEE--EEECCCCCEEEEEeCCCEE
Confidence                  5567999999999999999999863211          134455678888766  8999999999999999999


Q ss_pred             EEEeCCCCeEEEEecCCCCCeEEEEE------cCCCceEEeeCCC
Q 037288          446 RIWSIRSGELVFEDKFSNSVPSAVCW------RTQRSMGPQIEGK  484 (513)
Q Consensus       446 ~vwd~~~~~~~~~~~~~~~~v~~v~~------~p~~~~~~t~~~~  484 (513)
                      ++||+.+++++.++..|.+.|+++++      +|++.+++|++.|
T Consensus       333 ~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             EEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCC
Confidence            99999999999999999999999986      4567788887766

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=8.6e-25  Score=207.26  Aligned_cols=227  Identities=14%  Similarity=0.105  Sum_probs=191.4

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      ...|.||.++|++++|+|++++|++|+. ++|+|||+.+++.+..+. |...|.+++|+|++.+++++..++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            3568999999999999999999999875 569999999998777766 78889999999999999999999999999998


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      ....   ...+.+|...+.++.|++   .+++++       |+...+..  ...+.........+.+++++++|++++.|
T Consensus        90 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          90 GFEC---IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             SSCE---EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccc---ccccccccccceeeeccCCCceEEeeccCcceeEeeccccee--eeEEccCCCcceeeecccCCCEEEEEeCC
Confidence            8775   347889999999999998   566665       88776653  33444444444445889999999999999


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS--------------------ERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~--------------------g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      +.|++|+++  ....+..+.+|...+..  +.++|+                    +.++++|+.|+.|++||+.+++++
T Consensus       165 ~~v~~~~~~--~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         165 QTVRVWVVA--TKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             SCEEEEETT--TCCEEEEECCCSSCEEE--EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             CeEEEEeec--cceeeEEEecCCCCceE--EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence            999999997  55588888889888766  666554                    457999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          457 FEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       457 ~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ..+..|...|++++|+|++.++++++.|
T Consensus       241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d  268 (317)
T d1vyhc1         241 MTLVGHDNWVRGVLFHSGGKFILSCADD  268 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEECC
Confidence            9999999999999999998877776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=6.6e-25  Score=208.23  Aligned_cols=226  Identities=11%  Similarity=0.061  Sum_probs=173.8

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ...+.||.++|++++|+|++++|++|+. +.|++||+.++++...+.  |...|++++|+|++.++ +++.|+.+++|++
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEecc
Confidence            4669999999999999999999999865 459999999999887764  67789999999999755 5567999999998


Q ss_pred             CCCccccccccccccCcCeEEEeeCC--e-EEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND--R-VTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~--~-~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      ..............+...+.+++|++  . ++.+.      |+...     .........+.+ +.++|++++|++|+.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~-~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK-----LTEVPISYNSSC-VALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE-----EEEEECSSCEEE-EEECTTSCEEEEEETT
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc-cccccccccccccccc
Confidence            76543321223456788899999988  3 33333      43211     112223334444 5789999999999999


Q ss_pred             CeEEEEecCCCCccce-EEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE---ecCCCCCeEEEEEc
Q 037288          397 GTVKLYDHRLTTRGAV-QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE---DKFSNSVPSAVCWR  472 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~-~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~---~~~~~~~v~~v~~~  472 (513)
                      |.|++||++  ..... .....|...+..  ++|+|++++|++++.|+.|++||+.++..+..   +..|..+|++++|+
T Consensus       158 g~i~~~d~~--~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         158 SKVHVYKLS--GASVSEVKTIVHPAEITS--VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             SEEEEEEEE--TTEEEEEEEEECSSCEEE--EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             ccccccccc--cccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999996  33322 233468888877  88999999999999999999999998876543   45678899999999


Q ss_pred             CCCceEEeeCCCe
Q 037288          473 TQRSMGPQIEGKI  485 (513)
Q Consensus       473 p~~~~~~t~~~~~  485 (513)
                      |++.++++++.|-
T Consensus       234 ~~~~~l~sgs~dg  246 (299)
T d1nr0a2         234 PDNVRLATGSLDN  246 (299)
T ss_dssp             TTSSEEEEEETTS
T ss_pred             ccccceEEEcCCC
Confidence            9998888876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1e-24  Score=214.22  Aligned_cols=195  Identities=12%  Similarity=0.055  Sum_probs=136.1

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEe-----ee
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVC-----RS  295 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~-----~~  295 (513)
                      .++.+.+|++.+...          .....+.+|...|.+++|+|+++.|++|+. +.+++|+++........     .|
T Consensus        71 ~D~~i~vWd~~~~~~----------~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~  140 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTW----------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  140 (371)
T ss_dssp             TTSCEEEEEEETTEE----------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCeEEEEeeccccc----------ccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccc
Confidence            467888888763221          124556789999999999999999998865 55999988766532221     26


Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEe-ecC
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTT-FMP  374 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~-~~~  374 (513)
                      ...|.+++|+|++.+|++|+.|++|++||+.......   ... ....               ............. .+.
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~---~~~-~~~~---------------~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE---RPA-PTPW---------------GSKMPFGELMFESSSSC  201 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC---CCC-CBTT---------------BSCCCTTCEEEECCCCS
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCcccc---ccc-cccc---------------cccccceeeeeeccCcc
Confidence            7789999999999999999999999999987654221   000 0000               0000000000111 123


Q ss_pred             CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288          375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      ..+.+ +.|+|++++|++++.|+.|++||+.  ....+..+..|..++..  ++|+|++++|++| .|+.+++|...
T Consensus       202 ~~v~~-~~~s~~g~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~s--~~fs~d~~~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         202 GWVHG-VCFSANGSRVAWVSHDSTVCLADAD--KKMAVATLASETLPLLA--VTFITESSLVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             SCEEE-EEECSSSSEEEEEETTTEEEEEEGG--GTTEEEEEECSSCCEEE--EEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             CcEEE-EEeecccccccccccCCcceEEeee--cccceeeeeccccccee--eeecCCCCEEEEE-cCCceEEEEee
Confidence            33444 4778899999999999999999997  55588899999998876  8899999877765 47877776543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.7e-23  Score=201.03  Aligned_cols=193  Identities=16%  Similarity=0.154  Sum_probs=156.9

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK  327 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~  327 (513)
                      ...+.+|...........+........+.....++........... +...+....+.+.+.++++|+.|+.|++||+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~  215 (340)
T d1tbga_         136 SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE  215 (340)
T ss_dssp             EEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             ceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC
Confidence            4557788888888877777666667777788888887766544444 667799999999999999999999999999998


Q ss_pred             CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecC
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      ++.   +..+.+|..+|.+++|+|   .+++++       |+............. +...+.+ +.+++++++|++|+.|
T Consensus       216 ~~~---~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~g~~d  291 (340)
T d1tbga_         216 GMC---RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS-VSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             TEE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE-EEECSSSCEEEEEETT
T ss_pred             CcE---EEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE-EEECCCCCEEEEEECC
Confidence            876   448889999999999998   677766       777665533222222 2334555 4789999999999999


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS  449 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd  449 (513)
                      |.|++||+.  ...++.++.+|.+.|++  ++|+|++++|++|+.||.|+|||
T Consensus       292 g~i~iwd~~--~~~~~~~~~~H~~~V~~--l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         292 FNCNVWDAL--KADRAGVLAGHDNRVSC--LGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEETT--TCCEEEEECCCSSCEEE--EEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEECC--CCcEEEEEcCCCCCEEE--EEEeCCCCEEEEEccCCEEEEeC
Confidence            999999997  56689999999999877  88999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.1e-23  Score=199.64  Aligned_cols=191  Identities=9%  Similarity=0.043  Sum_probs=144.6

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      ...|...+.+++|++++++++++.++.+.+|+...   .........+.+++|+|++++|++|+.||.|++||+++....
T Consensus        95 ~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~  171 (299)
T d1nr0a2          95 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS  171 (299)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE
T ss_pred             ccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccc
Confidence            45677889999999999999999999999999642   223345566899999999999999999999999999876532


Q ss_pred             cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-
Q 037288          332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-  410 (513)
Q Consensus       332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-  410 (513)
                      .  .....|..+|.+                                  +.++|++++|++++.|+.|++||+...... 
T Consensus       172 ~--~~~~~~~~~i~~----------------------------------~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         172 E--VKTIVHPAEITS----------------------------------VAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             E--EEEEECSSCEEE----------------------------------EEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             c--cccccccccccc----------------------------------ccccccccccccccccccccccccccccccc
Confidence            2  122334444444                                  356779999999999999999998622111 


Q ss_pred             ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEe-cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL--VFED-KFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~--~~~~-~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ....+.+|...+.+  ++|+|++++|++|+.||.|++||+.++..  +... .++...+.+++|.++. +++|++.|
T Consensus       216 ~~~~~~~h~~~v~~--l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~s~D  289 (299)
T d1nr0a2         216 HTNSWTFHTAKVAC--VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQD  289 (299)
T ss_dssp             CCCCCCCCSSCEEE--EEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT-EEEEEETT
T ss_pred             cccccccccccccc--ccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCC-EEEEEeCC
Confidence            44567789999877  88999999999999999999999987653  2332 3345668888776655 45555444

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.5e-24  Score=211.27  Aligned_cols=249  Identities=10%  Similarity=0.064  Sum_probs=166.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCC-----CEEEEE-eCCeEEEEECCCC--------
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNP-----SQAVIG-TNLGAAMVDMETG--------  287 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-----~~l~s~-s~~~i~vwd~~~~--------  287 (513)
                      .+|.+.+|++...............  ......+...++.++|.+++     .+++++ .|+.+++||+...        
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             CCCcEEEEEccCCCceeeeeccccc--eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            4677777776544333221111100  11123456678888888753     466655 5677999997432        


Q ss_pred             ----cEE---EEee----eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc---cccccccCcCeEEEeeCCeE
Q 037288          288 ----MAS---WVCR----SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS---SRAGRRHRIPYSRLQRNDRV  353 (513)
Q Consensus       288 ----~~~---~~~~----~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~  353 (513)
                          ...   ....    +...+++++|+|++ +|++|+.||+|++||+.+++....   ...+.+|..+|.++      
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l------  237 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV------  237 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE------
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc------
Confidence                111   1111    33458999999998 889999999999999998765321   22455677777774      


Q ss_pred             EEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe---EEEEecCCCCccceEEe-------------cC
Q 037288          354 TNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT---VKLYDHRLTTRGAVQSY-------------EG  417 (513)
Q Consensus       354 ~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~---i~lwd~~~~~~~~~~~~-------------~~  417 (513)
                                                  .|+|++++|++|+.|++   |++||+.  ....+.++             .+
T Consensus       238 ----------------------------~~spdg~~l~sgs~D~t~~~i~lwd~~--~g~~~~~l~~~~~~~~~~~~~~g  287 (393)
T d1sq9a_         238 ----------------------------KFSPQGSLLAIAHDSNSFGCITLYETE--FGERIGSLSVPTHSSQASLGEFA  287 (393)
T ss_dssp             ----------------------------EECSSTTEEEEEEEETTEEEEEEEETT--TCCEEEEECBC--------CCBS
T ss_pred             ----------------------------ccccccceeeeecCCCCcceeeecccc--cceeeeeeccccccccceeeeec
Confidence                                        55679999999999874   9999996  33344444             48


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE----EEEEcCCCceEEeeCCCeeeee----
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS----AVCWRTQRSMGPQIEGKIHEEF----  489 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~----~v~~~p~~~~~~t~~~~~~~~~----  489 (513)
                      |.+.|++  ++|+|++++|++||.|++|+|||+.+++++.++++|...|.    .++|+|++..+++.+..-....    
T Consensus       288 H~~~V~~--l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (393)
T d1sq9a_         288 HSSWVMS--LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  365 (393)
T ss_dssp             BSSCEEE--EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             ccCceee--eccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCc
Confidence            9999877  89999999999999999999999999999999999987765    5889998776664432111111    


Q ss_pred             --ccCCcccceeeeeeccceeeee
Q 037288          490 --DLGQRHSWEAWIGTQEGLFRMN  511 (513)
Q Consensus       490 --~~~~~~~~~~~~gs~~g~~~~~  511 (513)
                        ........+....+.++.+|++
T Consensus       366 ~~~~~~~~~~~~~~~~~d~~ir~~  389 (393)
T d1sq9a_         366 RSGMGADLNESLCCVCLDRSIRWF  389 (393)
T ss_dssp             SBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             eeccccCCCCEEEEEEcCCeEEEE
Confidence              1122223445555667777764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.5e-23  Score=200.32  Aligned_cols=196  Identities=9%  Similarity=0.078  Sum_probs=151.6

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeC---CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCc-EEEEEeCCCeEEEEECC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTN---LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~---~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~  326 (513)
                      +..|..+|.+++|+++++++++++.   ..+.+|+.++++.+..+. |...|.+++|+|++. ++++++.|+.|++||+.
T Consensus       111 ~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~  190 (325)
T d1pgua1         111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP  190 (325)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred             cccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccc
Confidence            4567789999999999999887653   348999999999877766 788899999999885 57889999999999998


Q ss_pred             CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-CCEEEEEecCCeEEEEecC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-DQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~  405 (513)
                      ..+.........+|...|.+++|                                  +|+ +.+|++++.|+.|++||++
T Consensus       191 ~~~~~~~~~~~~~~~~~v~~v~~----------------------------------~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         191 PFKFSASDRTHHKQGSFVRDVEF----------------------------------SPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             TBEEEEEECSSSCTTCCEEEEEE----------------------------------CSTTCCEEEEEETTCCEEEEETT
T ss_pred             ccccceecccccCCCCccEEeee----------------------------------ccccceeccccccccceeeeeec
Confidence            77654434455667777777544                                  454 6889999999999999997


Q ss_pred             CCCccceEEecCCCCceeEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC--e--EEEEEcCCCceEEe
Q 037288          406 LTTRGAVQSYEGHVNSHTRIQLGVD-QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV--P--SAVCWRTQRSMGPQ  480 (513)
Q Consensus       406 ~~~~~~~~~~~~h~~~v~~~~~~~s-~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~--v--~~v~~~p~~~~~~t  480 (513)
                        ....+.++.+|...+....++.. |+|++|++++.|+.|+|||+.+++++..+..+...  +  .++.|.++..+ ++
T Consensus       237 --~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s  313 (325)
T d1pgua1         237 --SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI-IS  313 (325)
T ss_dssp             --TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE-EE
T ss_pred             --cccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEE-EE
Confidence              55688899999888765333322 78999999999999999999999999987765543  2  34555555544 44


Q ss_pred             eCCC
Q 037288          481 IEGK  484 (513)
Q Consensus       481 ~~~~  484 (513)
                      .+.|
T Consensus       314 ~s~d  317 (325)
T d1pgua1         314 LSLD  317 (325)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            4433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-22  Score=192.05  Aligned_cols=225  Identities=17%  Similarity=0.204  Sum_probs=158.4

Q ss_pred             eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ....++||.+.|.+ +++++|++|++|+. +.|+|||+.+++++..+. |...|.+++|++  ++|++|+.|+.+++|+.
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEET
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccccc
Confidence            34668999999865 36668999999875 559999999999888776 788899999986  48999999999999987


Q ss_pred             CCCcccc-------------------------------------------------------------------------
Q 037288          326 RKRQRGC-------------------------------------------------------------------------  332 (513)
Q Consensus       326 ~~~~~~~-------------------------------------------------------------------------  332 (513)
                      .......                                                                         
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            6432211                                                                         


Q ss_pred             ----ccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          333 ----SSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       333 ----~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                          .+..+.+|...+..+.+++ .+++++       |+...+...  .....+.....  .+++++++|++++.|+.|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~--~~~~~~~~~v~--~~~~~~~~l~s~s~d~~i~  240 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI--HTLTGHQSLTS--GMELKDNILVSGNADSTVK  240 (342)
T ss_dssp             GGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE--EEECCCCSCEE--EEEEETTEEEEEETTSCEE
T ss_pred             ccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceee--eEeccccccee--EEecCCCEEEEEcCCCEEE
Confidence                0111223333334444444 455554       666555432  22322233222  2344578999999999999


Q ss_pred             EEecCCCCccceEEecCC---CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----CCCCCeEEEEEc
Q 037288          401 LYDHRLTTRGAVQSYEGH---VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK-----FSNSVPSAVCWR  472 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h---~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~-----~~~~~v~~v~~~  472 (513)
                      +||+.  .......+.++   ...+..  +.  ++++++++|+.||+|++||++++++++.+.     .|...|++++|+
T Consensus       241 iwd~~--~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         241 IWDIK--TGQCLQTLQGPNKHQSAVTC--LQ--FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             EEETT--TCCEEEEECSTTSCSSCEEE--EE--ECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             EEecc--cccccccccccceeeeceee--cc--cCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            99997  44456666544   333322  44  457899999999999999999999998863     456789999999


Q ss_pred             CCCceEEeeCCCe
Q 037288          473 TQRSMGPQIEGKI  485 (513)
Q Consensus       473 p~~~~~~t~~~~~  485 (513)
                      |++.++|+++.+-
T Consensus       315 ~~~~~la~g~~dG  327 (342)
T d2ovrb2         315 NTKLVCAVGSRNG  327 (342)
T ss_dssp             SSEEEEEEECSSS
T ss_pred             CCCCEEEEEeCCC
Confidence            9998888877663

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.5e-22  Score=193.60  Aligned_cols=227  Identities=10%  Similarity=0.042  Sum_probs=145.4

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc----EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM----ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVT  322 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~i  322 (513)
                      ++..++|++.|++++|+|++++||+|+ |++|+|||+.++.    ......|..+|++++|+|++ .+|++|+.||.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            455789999999999999999999986 5569999987654    33344688999999999865 68999999999999


Q ss_pred             EECCCCccccccccccccCcCeE-EEeeC--C-eEEEeE-------eecccCcccceeEeecC----CCceEEEEEcCCC
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYS-RLQRN--D-RVTNEQ-------WFELKANIWPSHTTFMP----SSISCLQSLQLYD  387 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~-~v~~~--~-~~~s~~-------w~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~  387 (513)
                      |++.......   ....+...+. ...+.  . .+++++       |+.+.............    ........+.+.+
T Consensus        84 w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          84 VDLIGSPSFQ---ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSEE---ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eecccccccc---cccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9998776533   3333332222 22222  2 455554       77654433222211110    1111112334455


Q ss_pred             CEEEEEecCCeEEEEecCCCCcc--------------------------------------------------ceEE---
Q 037288          388 QYFLASSMDGTVKLYDHRLTTRG--------------------------------------------------AVQS---  414 (513)
Q Consensus       388 ~~l~s~s~dg~i~lwd~~~~~~~--------------------------------------------------~~~~---  414 (513)
                      ..+++++.|+.|++||++.....                                                  ....   
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            55666666666666665421000                                                  0000   


Q ss_pred             ------ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288          415 ------YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       415 ------~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~  481 (513)
                            ..+|...+.+  ++|+|++++|++|+.||.|+|||+.+++.+..+..+. .+..++|+|++.+++++
T Consensus       241 ~~~~~~~~~~~~~v~~--l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNS--IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLA  310 (342)
T ss_dssp             CCCCTTCCSSCCCEEE--EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEE
T ss_pred             eeeccCCCccccccee--EEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEE
Confidence                  0123334444  8999999999999999999999999999999876432 34556667665444443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.4e-21  Score=185.36  Aligned_cols=226  Identities=13%  Similarity=0.186  Sum_probs=166.4

Q ss_pred             eEEeccccCcE-EEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288          249 MHLVASFKCTV-WTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV  325 (513)
Q Consensus       249 ~~~~~~h~~~V-~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~  325 (513)
                      ..+|+||...| .|+++  ++++|++|+. +.|+|||+.+++++..+. |.+.|.+++|+|+ ++|++|+.|++|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            56799999886 55555  6889999865 569999999999888776 8888999999985 58999999999999999


Q ss_pred             CCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-------------------cCCC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-------------------MPSS  376 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-------------------~~~~  376 (513)
                      ....... ......+........+.+   .+++++       |+.............                   ....
T Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          82 KKGCCTH-VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTEEEE-EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccc-ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            8876543 222333334444455554   455555       776654322111000                   0001


Q ss_pred             ceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288          377 ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV  456 (513)
Q Consensus       377 v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~  456 (513)
                      ...+....+++++++++..|+.|++||++  ....+..+.++...+..  +.++|++.++++++.|+.|++||+.++.++
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVA--QMKCLYILSGHTDRIYS--TIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEE--EEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccccccccceeeeecccceeeeeecc--cccceeeeecccccccc--ccccccceeeecccccceEEeeeccccccc
Confidence            11223456678999999999999999997  55577888888877655  889999999999999999999999999999


Q ss_pred             EEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          457 FEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       457 ~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ..+..|...|.+++|+++  ++++++.|
T Consensus       237 ~~~~~h~~~v~~~~~~~~--~l~~~~~d  262 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSDK--FLVSAAAD  262 (355)
T ss_dssp             EEECCCSSCCCEEEECSS--EEEEECTT
T ss_pred             cccccccccccccccccc--eeeeeecc
Confidence            999999999999999875  44444433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.2e-21  Score=186.58  Aligned_cols=196  Identities=11%  Similarity=-0.006  Sum_probs=148.1

Q ss_pred             eEEecccc-CcEEEEEEcC--CCCEEEEEe-CCeEEEEECCCCcE---E-----E-EeeeCCCeEEEEEecCCcEEEEEe
Q 037288          249 MHLVASFK-CTVWTADFCT--NPSQAVIGT-NLGAAMVDMETGMA---S-----W-VCRSKSDILAQQVIHSGNVVLCGF  315 (513)
Q Consensus       249 ~~~~~~h~-~~V~~~~~s~--~g~~l~s~s-~~~i~vwd~~~~~~---~-----~-~~~~~~~V~~l~~~~~~~~l~sg~  315 (513)
                      +..+.+|. ..|++++|+|  ++.+|++|+ |++|+|||+..++.   .     . ...+.++|.+++|++++..|++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            45577874 6899999998  678999886 55699999876531   1     1 122677899999999999887775


Q ss_pred             C--CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEE
Q 037288          316 R--NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLA  392 (513)
Q Consensus       316 ~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s  392 (513)
                      .  ++.+.+|+..+++.   +..+.+|...|.+++|                                  ++++. .+++
T Consensus       135 ~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~----------------------------------~~~~~~~~~~  177 (325)
T d1pgua1         135 EGRDNFGVFISWDSGNS---LGEVSGHSQRINACHL----------------------------------KQSRPMRSMT  177 (325)
T ss_dssp             CCSSCSEEEEETTTCCE---EEECCSCSSCEEEEEE----------------------------------CSSSSCEEEE
T ss_pred             ccccceEEEEeeccccc---ceeeeecccccccccc----------------------------------cccccceEEE
Confidence            4  77899999988765   4477888888888655                                  44554 5778


Q ss_pred             EecCCeEEEEecCCCCccceEE---ecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEE
Q 037288          393 SSMDGTVKLYDHRLTTRGAVQS---YEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSA  468 (513)
Q Consensus       393 ~s~dg~i~lwd~~~~~~~~~~~---~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~  468 (513)
                      ++.|+.|++||+.  .......   +.+|...+.+  ++|+|+ +.+|++|+.||.|++||+++++.+..+..|..++..
T Consensus       178 ~~~d~~v~~~d~~--~~~~~~~~~~~~~~~~~v~~--v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~  253 (325)
T d1pgua1         178 VGDDGSVVFYQGP--PFKFSASDRTHHKQGSFVRD--VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  253 (325)
T ss_dssp             EETTTEEEEEETT--TBEEEEEECSSSCTTCCEEE--EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             eeccccccccccc--ccccceecccccCCCCccEE--eeeccccceeccccccccceeeeeecccccccccccccccccc
Confidence            9999999999986  3333333   3466777766  889996 689999999999999999999999999888776655


Q ss_pred             EEEc---CCCceEEeeCCCe
Q 037288          469 VCWR---TQRSMGPQIEGKI  485 (513)
Q Consensus       469 v~~~---p~~~~~~t~~~~~  485 (513)
                      +.|+   |++.+|++++.|-
T Consensus       254 ~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             CEEEEEESSSSEEEEEETTS
T ss_pred             ceeeeeccCCCEEEEEeCCC
Confidence            5554   4555666655543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.4e-20  Score=181.09  Aligned_cols=242  Identities=13%  Similarity=0.160  Sum_probs=167.4

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeC---
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSK---  296 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~---  296 (513)
                      ..+|.+.+|++.+.            ..+..+.+|...|++++|++++ +|++| .|+.|++|++............   
T Consensus        30 s~Dg~i~vWd~~~~------------~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~   96 (355)
T d1nexb2          30 ADDKMIRVYDSINK------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST   96 (355)
T ss_dssp             ETTTEEEEEETTTT------------EEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred             eCCCeEEEEECCCC------------cEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccccccccccccccccc
Confidence            35788888887643            2456789999999999999865 56655 5666999999998876655522   


Q ss_pred             CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc--------------------cccccccCcCeEEEeeCC-eEEE
Q 037288          297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS--------------------SRAGRRHRIPYSRLQRND-RVTN  355 (513)
Q Consensus       297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--------------------~~~~~~h~~~v~~v~~~~-~~~s  355 (513)
                      ..+....+.+++..+++++.|+.|++||++.......                    ......|...+....... .++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  176 (355)
T d1nexb2          97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS  176 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             ccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee
Confidence            2256667788999999999999999999987643220                    011122333444444433 3444


Q ss_pred             eE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEE
Q 037288          356 EQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG  428 (513)
Q Consensus       356 ~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~  428 (513)
                      +.       |+...++..  ..............+++++.++++++.|+.|++||++  ....+..+.+|...+.+  ++
T Consensus       177 ~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~~~~~h~~~v~~--~~  250 (355)
T d1nexb2         177 GSYDNTLIVWDVAQMKCL--YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE--NGELMYTLQGHTALVGL--LR  250 (355)
T ss_dssp             EETTSCEEEEETTTTEEE--EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT--TCCEEEEECCCSSCCCE--EE
T ss_pred             ecccceeeeeecccccce--eeeeccccccccccccccceeeecccccceEEeeecc--ccccccccccccccccc--cc
Confidence            43       776655432  2222223333345788999999999999999999997  55688899999999877  66


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          429 VDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       429 ~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      ++  +++|++|+.||.|++||+.++....... +.......++++++.++++++.+
T Consensus       251 ~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~d~  303 (355)
T d1nexb2         251 LS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSEN  303 (355)
T ss_dssp             EC--SSEEEEECTTSEEEEEETTTCCEEEEEE-CTTCCCCCEEEECSSEEEEEETT
T ss_pred             cc--cceeeeeecccccccccccccceecccc-cCCceEEEEEcCCCCEEEEEeCC
Confidence            65  6799999999999999999988765542 23333334667777777666544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-20  Score=174.11  Aligned_cols=220  Identities=13%  Similarity=0.156  Sum_probs=164.9

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~  328 (513)
                      ..+.+|...|.+++|  ++++|++|+. +.|++|++..+............ ...+.+....++++..++.+.+||....
T Consensus        49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (293)
T d1p22a2          49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-VLHLRFNNGMMVTCSKDRSIAVWDMASP  125 (293)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-EEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred             EEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc-cccccccccceeecccccceeEeecccc
Confidence            347789999999987  6778998865 45999999999876665543333 3344566778899999999999999877


Q ss_pred             ccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK  400 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~  400 (513)
                      ........+..|...+..+.+.+ .+++++       |+...++..  ..+.......  ..+++++.++++++.||.|+
T Consensus       126 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~--~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~  201 (293)
T d1p22a2         126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV--RTLNGHKRGI--ACLQYRDRLVVSGSSDNTIR  201 (293)
T ss_dssp             SCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE--EEEECCSSCE--EEEEEETTEEEEEETTSCEE
T ss_pred             ccccccccccccccccccceecccccccccCCCceeeecCCCCcEE--EEEccccccc--ccccCCCCeEEEecCCCEEE
Confidence            65443556788999999998888 555554       777766532  2232222222  23344678999999999999


Q ss_pred             EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CeEEEEecCCCCCeEEEEE
Q 037288          401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS---------GELVFEDKFSNSVPSAVCW  471 (513)
Q Consensus       401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~---------~~~~~~~~~~~~~v~~v~~  471 (513)
                      +||++  ....+..+.+|...+.    .+++++.+|++|+.||.|++||+.+         ..++..+..|.+.|++++|
T Consensus       202 i~d~~--~~~~~~~~~~~~~~v~----~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~  275 (293)
T d1p22a2         202 LWDIE--CGACLRVLEGHEELVR----CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF  275 (293)
T ss_dssp             EEETT--TCCEEEEECCCSSCEE----EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             EEecc--cceeeeeecccceeee----eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE
Confidence            99997  5568888888887764    3567899999999999999999743         3577888999999999999


Q ss_pred             cCCCceEEeeCCC
Q 037288          472 RTQRSMGPQIEGK  484 (513)
Q Consensus       472 ~p~~~~~~t~~~~  484 (513)
                      ++.  +++|++.|
T Consensus       276 d~~--~l~s~s~D  286 (293)
T d1p22a2         276 DEF--QIVSSSHD  286 (293)
T ss_dssp             CSS--CEEECCSS
T ss_pred             cCC--EEEEEecC
Confidence            654  56666655

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.2e-20  Score=177.38  Aligned_cols=186  Identities=17%  Similarity=0.160  Sum_probs=144.6

Q ss_pred             cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC-eEEEEECCCCcccccc
Q 037288          256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG-AIVTVDVRKRQRGCSS  334 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~  334 (513)
                      ...+.++++++++..++++.++.+.+|+..+++....+.....+.  ++++++..+++++.|+ .|++|++.......  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~--  155 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--  155 (287)
T ss_dssp             SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEE--
T ss_pred             ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceee--eeeccCcceeeeccccceeeeeeccccceee--
Confidence            356778899999999999999999999999999888877666654  4567788888888775 79999997654321  


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc-eE
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA-VQ  413 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~-~~  413 (513)
                      .....|..++++                                  +.|+|++.+|++|+.||.|++||+.  .... ..
T Consensus       156 ~~~~~~~~~v~~----------------------------------~~~s~~~~~l~~g~~dg~i~i~d~~--~~~~~~~  199 (287)
T d1pgua2         156 DLKTPLRAKPSY----------------------------------ISISPSETYIAAGDVMGKILLYDLQ--SREVKTS  199 (287)
T ss_dssp             ECSSCCSSCEEE----------------------------------EEECTTSSEEEEEETTSCEEEEETT--TTEEEEC
T ss_pred             eeeeccCCceeE----------------------------------EEeccCccccccccccccccceeec--ccccccc
Confidence            122334555555                                  3567799999999999999999996  4333 33


Q ss_pred             EecCCCCceeEEEEEEcC----------CCCEEEEEeCCCcEEEEeCCC-CeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288          414 SYEGHVNSHTRIQLGVDQ----------SERFVMSGGEDCKLRIWSIRS-GELVFEDKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       414 ~~~~h~~~v~~~~~~~s~----------~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      .+.+|...+.+  ++|+|          ++.+|++|+.|++|+|||+.+ ++++..+..|...|++++|+|++. ++|++
T Consensus       200 ~~~~h~~~v~~--~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g  276 (287)
T d1pgua2         200 RWAFRTSKINA--ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG  276 (287)
T ss_dssp             CSCCCSSCEEE--EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred             cccccccccce--eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE
Confidence            46789998877  77776          457899999999999999977 667777888999999999999875 44454


Q ss_pred             CC
Q 037288          483 GK  484 (513)
Q Consensus       483 ~~  484 (513)
                      .|
T Consensus       277 ~D  278 (287)
T d1pgua2         277 AD  278 (287)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.7e-20  Score=174.05  Aligned_cols=164  Identities=19%  Similarity=0.285  Sum_probs=124.9

Q ss_pred             cCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEE
Q 037288          245 RRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVT  322 (513)
Q Consensus       245 ~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~i  322 (513)
                      ....+..+.+|...+..+.+  ++.++++|+ |+.|++||+..++.+.... |...|.+++++  +++|++|+.||.|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         166 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKI  241 (342)
T ss_dssp             GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEE
Confidence            33456677888887777665  678888876 5569999999999877666 66678888775  579999999999999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY  402 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw  402 (513)
                      ||+...+....+.....|...+.+                                    ++.+++++++|+.||.|++|
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~s~s~Dg~i~iw  285 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTC------------------------------------LQFNKNFVITSSDDGTVKLW  285 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEE------------------------------------EEECSSEEEEEETTSEEEEE
T ss_pred             Eecccccccccccccceeeeceee------------------------------------cccCCCeeEEEcCCCEEEEE
Confidence            999887654322233334444433                                    33367899999999999999


Q ss_pred             ecCCCCccceEEec-----CCCCceeEEEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 037288          403 DHRLTTRGAVQSYE-----GHVNSHTRIQLGVDQSERFVMSGGEDCK----LRIWSIRS  452 (513)
Q Consensus       403 d~~~~~~~~~~~~~-----~h~~~v~~~~~~~s~~g~~l~sg~~Dg~----v~vwd~~~  452 (513)
                      |++  ..+.++++.     +|...|..  ++|+|++.+|++|+.||+    |++||+..
T Consensus       286 d~~--tg~~i~~~~~~~~~~~~~~v~~--v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         286 DLK--TGEFIRNLVTLESGGSGGVVWR--IRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETT--TCCEEEEEEECTTGGGTCEEEE--EEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ECC--CCCEEEEEecccCCCCCCCEEE--EEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            997  555666663     56667766  899999999999999986    99999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.1e-19  Score=164.98  Aligned_cols=218  Identities=17%  Similarity=0.198  Sum_probs=158.6

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR  326 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~  326 (513)
                      +.....|...|+|++|  +|++||+|+. +.|+|||+.+++++..+. |...|++++|  ++++|++|+.|+.|++|++.
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            4446678899999775  7899999865 559999999999888877 7888999887  67899999999999999999


Q ss_pred             CCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEe--ecCCCceEEEEEcCCCCEEEEEecC
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTT--FMPSSISCLQSLQLYDQYFLASSMD  396 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~s~d  396 (513)
                      .+....   ....+........... .++++.       |+............  .+...+..   .......+++++.|
T Consensus        84 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~s~d  157 (293)
T d1p22a2          84 TGEMLN---TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV---VDFDDKYIVSASGD  157 (293)
T ss_dssp             SCCEEE---EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE---EEEETTEEEEEETT
T ss_pred             cccccc---cccccccccccccccccceeecccccceeEeecccccccccccccccccccccc---ceecccccccccCC
Confidence            876533   3333444444433333 444444       66655443322222  12233332   33456788999999


Q ss_pred             CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288          397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS  476 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  476 (513)
                      +.|++||++  ....+..+.+|...+..  +.+  ++.+|++++.||.|++||+++.+.+.....+...+..+.  ++..
T Consensus       158 ~~i~~~d~~--~~~~~~~~~~~~~~v~~--~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~  229 (293)
T d1p22a2         158 RTIKVWNTS--TCEFVRTLNGHKRGIAC--LQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--FDNK  229 (293)
T ss_dssp             SEEEEEETT--TCCEEEEEECCSSCEEE--EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--CCSS
T ss_pred             CceeeecCC--CCcEEEEEccccccccc--ccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeeecc--ccce
Confidence            999999997  55688889999887655  444  477999999999999999999999999988888777654  4444


Q ss_pred             eEEeeCCC
Q 037288          477 MGPQIEGK  484 (513)
Q Consensus       477 ~~~t~~~~  484 (513)
                      ++++.+.|
T Consensus       230 ~l~sg~~d  237 (293)
T d1p22a2         230 RIVSGAYD  237 (293)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEcCC
Confidence            55554443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.5e-20  Score=180.96  Aligned_cols=152  Identities=14%  Similarity=0.128  Sum_probs=117.2

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-------eCCCeEEEEEecCCcEEEEEeCCC---eE
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-------SKSDILAQQVIHSGNVVLCGFRNG---AI  320 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-------~~~~V~~l~~~~~~~~l~sg~~dg---~i  320 (513)
                      ...+...+.+++|+|++ +||+|+ |+.|+|||+.+++++..+.       |...|.+++|+|+|++|++|+.|+   .|
T Consensus       180 ~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i  258 (393)
T d1sq9a_         180 PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI  258 (393)
T ss_dssp             SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred             ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCccee
Confidence            34556679999999998 777775 5569999999998766543       678899999999999999999987   49


Q ss_pred             EEEECCCCccccc----------cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEE
Q 037288          321 VTVDVRKRQRGCS----------SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYF  390 (513)
Q Consensus       321 ~iwd~~~~~~~~~----------~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  390 (513)
                      ++||+.+++....          ...+.+|...|+++                                  .|+|++++|
T Consensus       259 ~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l----------------------------------~fspd~~~l  304 (393)
T d1sq9a_         259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL----------------------------------SFNDSGETL  304 (393)
T ss_dssp             EEEETTTCCEEEEECBC--------CCBSBSSCEEEE----------------------------------EECSSSSEE
T ss_pred             eecccccceeeeeeccccccccceeeeecccCceeee----------------------------------ccCCCCCee
Confidence            9999988765331          11234566666663                                  567799999


Q ss_pred             EEEecCCeEEEEecCCCCccceEEecCCCCceeE--EEEEEcCCCCEEEEEe
Q 037288          391 LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR--IQLGVDQSERFVMSGG  440 (513)
Q Consensus       391 ~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~--~~~~~s~~g~~l~sg~  440 (513)
                      ++|+.|++|++||+.  ...++.++++|.+.|..  ..++|+|++..+++++
T Consensus       305 ~S~s~D~~v~vWd~~--~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVK--TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEETTSEEEEEETT--TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EEECCCCEEEEEECC--CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            999999999999997  55699999999887643  1256778877766544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3.1e-20  Score=174.54  Aligned_cols=159  Identities=11%  Similarity=0.158  Sum_probs=124.0

Q ss_pred             EEEcCCCCEEEEEe-CC-eEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288          262 ADFCTNPSQAVIGT-NL-GAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       262 ~~~s~~g~~l~s~s-~~-~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  337 (513)
                      .++++++..+++++ ++ .+++|++..........  +...|++++|+|++.+|++|+.||.|++||+.+....  ...+
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~  201 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK--TSRW  201 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--ECCS
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc--cccc
Confidence            45567788777665 43 49999998665544443  6677999999999999999999999999999887642  3457


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                      .+|..+|.+++|+|                        ..........++.+|++|+.|+.|++||++. ....+..+.+
T Consensus       202 ~~h~~~v~~~~~~p------------------------~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~-~~~~~~~~~~  256 (287)
T d1pgua2         202 AFRTSKINAISWKP------------------------AEKGANEEEIEEDLVATGSLDTNIFIYSVKR-PMKIIKALNA  256 (287)
T ss_dssp             CCCSSCEEEEEECC------------------------CC------CCSCCEEEEEETTSCEEEEESSC-TTCCEEETTS
T ss_pred             cccccccceeeecc------------------------cccccccccCCCCeeEeecCCCeEEEEECCC-CCeEEEEeCC
Confidence            88999999999976                        0011124456889999999999999999962 1236778889


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      |...|..  ++|+|++ .|++++.||+|++|++
T Consensus       257 h~~~V~~--v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         257 HKDGVNN--LLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             STTCEEE--EEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCCeEE--EEECCCC-EEEEEECCCeEEEEEE
Confidence            9999877  7888876 5899999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=2.6e-18  Score=165.97  Aligned_cols=163  Identities=12%  Similarity=0.036  Sum_probs=123.5

Q ss_pred             CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CC--eEEEEECCCCcEEEEeeeCCCe
Q 037288          223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NL--GAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~--~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      .|.+.+|++.....             . ..+|...|.+++|+|||++|++++ ++  .|++||+.+++...+..|...|
T Consensus        23 ~g~v~v~d~~~~~~-------------~-~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v   88 (360)
T d1k32a3          23 RGQAFIQDVSGTYV-------------L-KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNV   88 (360)
T ss_dssp             TTEEEEECTTSSBE-------------E-ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSE
T ss_pred             CCeEEEEECCCCcE-------------E-EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceE
Confidence            46777777653221             1 237899999999999999988654 44  3899999999988888899999


Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-----------------ee
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-----------------WF  359 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-----------------w~  359 (513)
                      .+++|+|+|++|++++.++.+++|++...+..   ..+..|...+.+++|+|   .++...                 |+
T Consensus        89 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3          89 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPT---VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             Eeeeecccccccceecccccccccccccccee---eeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence            99999999999999999999999999888753   36778889999999998   343322                 44


Q ss_pred             cccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          360 ELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       360 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      ...+..   ..............++|+|++|++++.|+.+++||..
T Consensus       166 ~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         166 MEGRKI---FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             TTTTEE---EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cccCce---eeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            443321   1111222233345789999999999999999999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=2.7e-18  Score=165.80  Aligned_cols=180  Identities=9%  Similarity=0.004  Sum_probs=146.1

Q ss_pred             EEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC--eEEEEECCCCccccccccc
Q 037288          261 TADFCT-NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG--AIVTVDVRKRQRGCSSRAG  337 (513)
Q Consensus       261 ~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~  337 (513)
                      .-+||| ||+++|+++++.|.+||+.++..+. +.|...|.+++|+|||+.|++++.+.  .|++||+.++.    +..+
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~----~~~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK----AEKF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----EEEC
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----EEEe
Confidence            467999 9999999999999999999888765 46888999999999998887766553  79999998875    3456


Q ss_pred             cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288          338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG  417 (513)
Q Consensus       338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~  417 (513)
                      ..|...|.++                                  .|+|++++|++++.++.+++|++.  .......+..
T Consensus        82 ~~~~~~v~~~----------------------------------~~spdg~~l~~~~~~~~~~~~~~~--~~~~~~~~~~  125 (360)
T d1k32a3          82 EENLGNVFAM----------------------------------GVDRNGKFAVVANDRFEIMTVDLE--TGKPTVIERS  125 (360)
T ss_dssp             CCCCCSEEEE----------------------------------EECTTSSEEEEEETTSEEEEEETT--TCCEEEEEEC
T ss_pred             eCCCceEEee----------------------------------eecccccccceecccccccccccc--ccceeeeeec
Confidence            6777777663                                  567799999999999999999996  4556777888


Q ss_pred             CCCceeEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          418 HVNSHTRIQLGVDQSERFVMSGG----------EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       418 h~~~v~~~~~~~s~~g~~l~sg~----------~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      |...+..  ++|+|+|++|+.++          .++.+++||+.+++..... .+...+..++|+|++..+++.+.+
T Consensus       126 ~~~~~~~--~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~  199 (360)
T d1k32a3         126 REAMITD--FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYR  199 (360)
T ss_dssp             SSSCCCC--EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESC
T ss_pred             ccccccc--hhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCC
Confidence            8877766  89999999998654          3557999999998876554 456678899999998777765543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.8e-17  Score=157.54  Aligned_cols=213  Identities=8%  Similarity=0.023  Sum_probs=135.4

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEE----EEee--
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMAS----WVCR--  294 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~----~~~~--  294 (513)
                      .+|.+.+|++......           ......+........+.++...+++++ ++.+++||++++...    ....  
T Consensus        77 ~d~~v~~w~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~  145 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             TTSCEEEECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             cccceeeeeccccccc-----------ccccccccccccccccccccccccccccccccceeeccccccceeeecccccc
Confidence            5677888776643322           111222333445555666777777665 566999998654321    1111  


Q ss_pred             -eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eeccc
Q 037288          295 -SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELK  362 (513)
Q Consensus       295 -~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~  362 (513)
                       .......+.+.+++..+++++.|+.|++||++.............+...+.+..+.+    .+++++       |....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence             122346667788899999999999999999987765442333445555666666655    444444       43322


Q ss_pred             Cccc----ceeE----------eecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEE
Q 037288          363 ANIW----PSHT----------TFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG  428 (513)
Q Consensus       363 ~~~~----~~~~----------~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~  428 (513)
                      ....    ....          ..+...+.+ +.|+|++++|++|+.||.|++||++  ....+.++..+. ....  ++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~lasg~~Dg~v~vWD~~--~~~~l~~~~~~~-~~~~--~~  299 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS-IEFSPRHKFLYTAGSDGIISCWNLQ--TRKKIKNFAKFN-EDSV--VK  299 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEE-EEECTTTCCEEEEETTSCEEEEETT--TTEEEEECCCCS-SSEE--EE
T ss_pred             CcceeeccccceeeeeeeccCCCccccccee-EEecCCccEEEEECCCCEEEEEECC--CCcEEEEecCCC-CCEE--EE
Confidence            2111    0000          011223445 4889999999999999999999997  555777776433 2334  67


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCC
Q 037288          429 VDQSERFVMSGGEDCKLRIWSIR  451 (513)
Q Consensus       429 ~s~~g~~l~sg~~Dg~v~vwd~~  451 (513)
                      |+|+|++|++|+.|+.+++|...
T Consensus       300 ~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         300 IACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEECSSEEEEEEECTHHHHCSSS
T ss_pred             EEeCCCEEEEEEcCCcEEEeeee
Confidence            78899999999999999888754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=3.3e-16  Score=155.74  Aligned_cols=242  Identities=6%  Similarity=0.024  Sum_probs=150.2

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE--ee---
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV--CR---  294 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~--~~---  294 (513)
                      ..+|.+.+|++.+...            +..+..| ..+..++|+|||+++++++ |+++++||+.+++....  +.   
T Consensus        39 ~~dg~v~vwD~~t~~~------------~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          39 RDAGQIALVDGDSKKI------------VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             TTTTEEEEEETTTCSE------------EEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             cCCCEEEEEECCCCcE------------EEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            3578888888775433            3456665 4689999999999999876 56799999999874432  22   


Q ss_pred             -eCCCeEEEEEecCCcEEEE-EeCCCeEEEEECCCCccccccccccccCc-----------CeEEEeeCC---eEEEeE-
Q 037288          295 -SKSDILAQQVIHSGNVVLC-GFRNGAIVTVDVRKRQRGCSSRAGRRHRI-----------PYSRLQRND---RVTNEQ-  357 (513)
Q Consensus       295 -~~~~V~~l~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~v~~v~~~~---~~~s~~-  357 (513)
                       |...+.+++|+|||++|++ +..++.+.+||........   .+..|..           ....+.+++   .++... 
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ---IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE---EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeE---EeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence             4445677788899987654 4579999999998876533   3333322           233333333   111111 


Q ss_pred             -------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCC-----------------------
Q 037288          358 -------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRL-----------------------  406 (513)
Q Consensus       358 -------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~-----------------------  406 (513)
                             ++...........+.....+.. ..+++++++++++.. +..+.++|...                       
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAAPFLAD-GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECCSSEEE-EEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred             CCCeEEEEEeccccceeeEEeccCCccEe-eeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec
Confidence                   1111111111122222223333 355666665555432 33344444321                       


Q ss_pred             ------------------------C-----CccceEEecCCCCceeEEEEEEcCCCCEEEE-------EeCCCcEEEEeC
Q 037288          407 ------------------------T-----TRGAVQSYEGHVNSHTRIQLGVDQSERFVMS-------GGEDCKLRIWSI  450 (513)
Q Consensus       407 ------------------------~-----~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~s-------g~~Dg~v~vwd~  450 (513)
                                              .     ......++.+|...+..  ++|+|++++|++       ++.|++|+|||+
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~--v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~  339 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF--IKTHPKSSHLYVDTTFNPDARISQSVAVFDL  339 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC--EECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeE--EEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence                                    0     11245667788887777  889999999994       556899999999


Q ss_pred             CCCeEEEEe---------cCCCCCeEEEEEcCCCc-eEEee
Q 037288          451 RSGELVFED---------KFSNSVPSAVCWRTQRS-MGPQI  481 (513)
Q Consensus       451 ~~~~~~~~~---------~~~~~~v~~v~~~p~~~-~~~t~  481 (513)
                      .++++..++         ..+...|..++|+|++. +++++
T Consensus       340 ~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~  380 (426)
T d1hzua2         340 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  380 (426)
T ss_dssp             TCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEE
T ss_pred             CCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEE
Confidence            998866553         23455689999999975 54553

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=6.3e-14  Score=131.02  Aligned_cols=215  Identities=7%  Similarity=-0.008  Sum_probs=150.2

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eC-CeEEEEECCCCcEEEEeeeCCCe
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TN-LGAAMVDMETGMASWVCRSKSDI  299 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~-~~i~vwd~~~~~~~~~~~~~~~V  299 (513)
                      .++.+.+|++.+...            +..+..|. .+..++|++++..++++ .+ ..+.+|+..+++....+.+...+
T Consensus        52 ~~~~i~v~d~~t~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (301)
T d1l0qa2          52 HSNDVSIIDTATNNV------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP  118 (301)
T ss_dssp             GGTEEEEEETTTTEE------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCCEEEEEECCCCce------------eeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccccccc
Confidence            356677777764322            33344444 46889999999976654 33 45899999999998888888889


Q ss_pred             EEEEEecCCcEE-EEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccc
Q 037288          300 LAQQVIHSGNVV-LCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWP  367 (513)
Q Consensus       300 ~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~  367 (513)
                      .++.|+|++..+ +++..++.+.+|+..+.....   .+. +...+..+.+++   .++.+.        |......  .
T Consensus       119 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  192 (301)
T d1l0qa2         119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN---TVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS--V  192 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--E
T ss_pred             eEEEeecCCCeeeeeeccccceeeeeccccceee---ecc-cCCCceEEEeeccccceeeeccccccccccccccee--e
Confidence            999999999765 555668899999998886533   333 334567788887   444443        2222222  2


Q ss_pred             eeEeecCCCceEEEEEcCCCCEEEEEec---CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEE-EEEeCCC
Q 037288          368 SHTTFMPSSISCLQSLQLYDQYFLASSM---DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV-MSGGEDC  443 (513)
Q Consensus       368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l-~sg~~Dg  443 (513)
                      ............ ..+++++..+++++.   ++.|++||+.  ....+..+..+.. +..  ++|+|||++| ++++.|+
T Consensus       193 ~~~~~~~~~~~~-~~~~~~g~~~~v~~~~~~~~~v~v~D~~--t~~~~~~~~~~~~-~~~--va~spdg~~l~va~~~~~  266 (301)
T d1l0qa2         193 IDTVKVEAAPSG-IAVNPEGTKAYVTNVDKYFNTVSMIDTG--TNKITARIPVGPD-PAG--IAVTPDGKKVYVALSFCN  266 (301)
T ss_dssp             EEEEECSSEEEE-EEECTTSSEEEEEEECSSCCEEEEEETT--TTEEEEEEECCSS-EEE--EEECTTSSEEEEEETTTT
T ss_pred             eecccccCCcce-eeccccccccccccccceeeeeeeeecC--CCeEEEEEcCCCC-EEE--EEEeCCCCEEEEEECCCC
Confidence            223333444444 467888888876654   4679999997  4456666765443 444  8999999987 5777899


Q ss_pred             cEEEEeCCCCeEEEEecC
Q 037288          444 KLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       444 ~v~vwd~~~~~~~~~~~~  461 (513)
                      +|++||+.+++++.++..
T Consensus       267 ~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         267 TVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCeEEEEEeC
Confidence            999999999999988764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=6.4e-15  Score=140.10  Aligned_cols=221  Identities=10%  Similarity=-0.010  Sum_probs=142.8

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-------------CCeEEEEECCCCc
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-------------NLGAAMVDMETGM  288 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-------------~~~i~vwd~~~~~  288 (513)
                      .++.+.+|++.+.....+ .+..      ....+...+..++|+|++++++++.             +..+.+||..+++
T Consensus        54 ~~~~v~v~D~~t~~~~~~-~~~~------~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  126 (337)
T d1pbyb_          54 KSESLVKIDLVTGETLGR-IDLS------TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS  126 (337)
T ss_dssp             TTTEEEEEETTTCCEEEE-EECC------BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCcEEEE-EecC------CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe
Confidence            467788888775443311 0000      0111233456799999999887664             3458899999999


Q ss_pred             EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCc------CeEEEeeCC----------e
Q 037288          289 ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI------PYSRLQRND----------R  352 (513)
Q Consensus       289 ~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~v~~~~----------~  352 (513)
                      ....+.+...+.+++|+|||.++++++.  .+.+||...++...   .+..+..      ......+.+          .
T Consensus       127 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (337)
T d1pbyb_         127 RRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVE---DKPIQSWEAETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             EEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEE---EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             EEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEE---EeecCCccccceecCCcceeeccccccceeeee
Confidence            9888888888999999999999998864  47789988765432   1111100      000000000          0


Q ss_pred             EE-----------------EeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288          353 VT-----------------NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY  415 (513)
Q Consensus       353 ~~-----------------s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~  415 (513)
                      ..                 ...|+...+......... .........+++++.+++.+  ++.|++||+.  ....+..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~--~~~~~~~~  276 (337)
T d1pbyb_         202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLE--KNASIKRV  276 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETT--TTEEEEEE
T ss_pred             eeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC-CCcceEEEEecccceEEEEc--cccEEEEECC--CCcEEEEE
Confidence            00                 011444444432222222 23333334678888887765  5899999997  55566666


Q ss_pred             cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC
Q 037288          416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS  462 (513)
Q Consensus       416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~  462 (513)
                      . +...+.+  ++|+|||++|++++.|++|+|||+.+++.+.+++..
T Consensus       277 ~-~~~~~~~--~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         277 P-LPHSYYS--VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             E-CSSCCCE--EEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             c-CCCCEEE--EEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            5 4445555  899999999999999999999999999999987643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.61  E-value=1.6e-12  Score=121.27  Aligned_cols=238  Identities=7%  Similarity=0.036  Sum_probs=164.2

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeeeCCC
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRSKSD  298 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~~~~  298 (513)
                      ..++.+.++++.+...+            ..+. ....+..++|+|||++|+ ++ .++.|++||+.+++.+..+.....
T Consensus         9 ~~~~~v~v~D~~t~~~~------------~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~   75 (301)
T d1l0qa2           9 SESDNISVIDVTSNKVT------------ATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS   75 (301)
T ss_dssp             TTTTEEEEEETTTTEEE------------EEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCCEEEEEECCCCeEE------------EEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc
Confidence            35667888887654322            2222 234578999999999875 44 356799999999999888887778


Q ss_pred             eEEEEEecCCcE-EEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCccc
Q 037288          299 ILAQQVIHSGNV-VLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIW  366 (513)
Q Consensus       299 V~~l~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~  366 (513)
                      +..++|++++.. ++++..++.+.+||..+++...   .+. +......+.|++   .++...        |+...... 
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-  150 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-  150 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-
T ss_pred             ccccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccce-
Confidence            899999999974 5556678899999998876432   333 445667788887   333332        44444332 


Q ss_pred             ceeEeecCCCceEEEEEcCCCCEEEEEecC-CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---C
Q 037288          367 PSHTTFMPSSISCLQSLQLYDQYFLASSMD-GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---D  442 (513)
Q Consensus       367 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---D  442 (513)
                       ...+.....+..+ .+++++..+++++.+ +.+.+|+..  .......+..+.. ...  ++++++++.++.++.   +
T Consensus       151 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~--~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         151 -INTVSVGRSPKGI-AVTPDGTKVYVANFDSMSISVIDTV--TNSVIDTVKVEAA-PSG--IAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             -EEEEECCSSEEEE-EECTTSSEEEEEETTTTEEEEEETT--TTEEEEEEECSSE-EEE--EEECTTSSEEEEEEECSSC
T ss_pred             -eeecccCCCceEE-Eeeccccceeeeccccccccccccc--ceeeeecccccCC-cce--eecccccccccccccccee
Confidence             2334445555554 678888888877765 566677764  3334555554433 333  789999998876543   4


Q ss_pred             CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc-eEEeeCCC
Q 037288          443 CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS-MGPQIEGK  484 (513)
Q Consensus       443 g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~~t~~~~  484 (513)
                      +.|++||+.+++++..+..+ ..+.+++|+|++. +++++..+
T Consensus       224 ~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~  265 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC  265 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred             eeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCC
Confidence            68999999999999887764 4589999999965 55676554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=3.2e-14  Score=141.35  Aligned_cols=178  Identities=10%  Similarity=-0.011  Sum_probs=127.2

Q ss_pred             EEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc--ccccccccCcCeEE
Q 037288          270 QAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC--SSRAGRRHRIPYSR  346 (513)
Q Consensus       270 ~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~  346 (513)
                      ++++.++ ++|.|||..+++++..+.....+..++|+|||+++++++.|+.|++||+.+.+...  .+....+|...+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            3455554 46999999999999999876779999999999999999999999999998776432  01222233222222


Q ss_pred             EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEE-EEEecCCeEEEEecCCCCccceEEecCCCCce---
Q 037288          347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYF-LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH---  422 (513)
Q Consensus       347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v---  422 (513)
                                                        ..++|||++| ++++.++.|++||..  ...++..+..|...+   
T Consensus       114 ----------------------------------~~~SpDG~~l~vs~~~~~~v~i~d~~--t~~~~~~~~~~~~~~~~~  157 (432)
T d1qksa2         114 ----------------------------------KMEGWEDKYAIAGAYWPPQYVIMDGE--TLEPKKIQSTRGMTYDEQ  157 (432)
T ss_dssp             ----------------------------------CSTTCTTTEEEEEEEETTEEEEEETT--TCCEEEEEECCEECTTTC
T ss_pred             ----------------------------------cccCCCCCEEEEEcCCCCeEEEEeCc--cccceeeeccCCccccce
Confidence                                              2467899986 678889999999997  445666665443211   


Q ss_pred             ------eEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEec-CCCCCeEEEEEcCCCc-eEEeeCC
Q 037288          423 ------TRIQLGVDQSERFV-MSGGEDCKLRIWSIRSGELVFEDK-FSNSVPSAVCWRTQRS-MGPQIEG  483 (513)
Q Consensus       423 ------~~~~~~~s~~g~~l-~sg~~Dg~v~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~-~~~t~~~  483 (513)
                            ....+.++|+|..+ ++...++.|.+||..+++...... .+...+..++|+|++. +++++..
T Consensus       158 ~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         158 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc
Confidence                  11336789998765 566778999999999887655432 3456689999999965 4444433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.57  E-value=2.6e-13  Score=134.43  Aligned_cols=176  Identities=8%  Similarity=-0.028  Sum_probs=118.6

Q ss_pred             EEeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEEEEeee---CCCeEEEEEecCCc---EEEEEeCCCeEE
Q 037288          250 HLVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMASWVCRS---KSDILAQQVIHSGN---VVLCGFRNGAIV  321 (513)
Q Consensus       250 ~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~~---~~~V~~l~~~~~~~---~l~sg~~dg~i~  321 (513)
                      ....++...+..++|+|+++++.++.  ++.+.+++..+++.......   ........+...+.   ..++.+.|+.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  279 (426)
T d1hzua2         200 VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  279 (426)
T ss_dssp             EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred             eEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEE
Confidence            34557788999999999999888774  34489999999998777652   22234444444332   223345688999


Q ss_pred             EEECCCCcccc----ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE-----
Q 037288          322 TVDVRKRQRGC----SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA-----  392 (513)
Q Consensus       322 iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-----  392 (513)
                      +|+........    ....+.+|...+..                                  +.++|++++|++     
T Consensus       280 ~~~~~~~~~~~~~~~~~~~l~g~~~~v~~----------------------------------v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         280 LIGTDPKNHPQYAWKKVAELQGQGGGSLF----------------------------------IKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSSSCCCC----------------------------------EECCTTCSEEEECCTTC
T ss_pred             EeeccccccccccceEeEEEecCCCceeE----------------------------------EEcCCCCceEEEeecCC
Confidence            99876543211    12344555555544                                  366789999984     


Q ss_pred             --EecCCeEEEEecCCCCccceEEe---------cCCCCceeEEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeEE
Q 037288          393 --SSMDGTVKLYDHRLTTRGAVQSY---------EGHVNSHTRIQLGVDQSERFVMSG-----GEDCKLRIWSIRSGELV  456 (513)
Q Consensus       393 --~s~dg~i~lwd~~~~~~~~~~~~---------~~h~~~v~~~~~~~s~~g~~l~sg-----~~Dg~v~vwd~~~~~~~  456 (513)
                        ++.|++|++||+.  +.....++         ..|...+  +.+.|+|||++|+.+     +.||.|+|||.+++++.
T Consensus       326 ~s~~~~~tv~vwd~~--t~~~~~~~~~~~~~~~~~~~~~rv--~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         326 PDARISQSVAVFDLK--NLDAKYQVLPIAEWADLGEGAKRV--VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             SSHHHHTCEEEEETT--CTTSCCEEECHHHHHCCCSSCCCE--EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             CCcccCCEEEEEECC--CCCcCeEEeccchhcccCCCCccE--EEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence              5568899999997  33333333         2344444  448999999977543     35888999999999999


Q ss_pred             EEecCCC
Q 037288          457 FEDKFSN  463 (513)
Q Consensus       457 ~~~~~~~  463 (513)
                      ..+..+.
T Consensus       402 ~~i~~~~  408 (426)
T d1hzua2         402 AVVKDPR  408 (426)
T ss_dssp             EEECCTT
T ss_pred             EEECCCC
Confidence            8887653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.51  E-value=1.7e-12  Score=123.39  Aligned_cols=223  Identities=9%  Similarity=0.008  Sum_probs=137.6

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEec-cccCcEEEEEEcCCCCEEE-EEe-CCeEEEEECCCCcEEEEeeeC--
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVA-SFKCTVWTADFCTNPSQAV-IGT-NLGAAMVDMETGMASWVCRSK--  296 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~s~~g~~l~-s~s-~~~i~vwd~~~~~~~~~~~~~--  296 (513)
                      .++.+.+|++.+...            +.++. .|...+.+++|+|||++++ ++. ++.|.+||+.+++.+..+...  
T Consensus        16 ~~~~v~v~D~~t~~~------------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~   83 (346)
T d1jmxb_          16 YPNNLHVVDVASDTV------------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   83 (346)
T ss_dssp             TTTEEEEEETTTTEE------------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCEEEEEECCCCCE------------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence            467888888875432            23343 4556778999999999875 443 456999999999887766522  


Q ss_pred             -----CCeEEEEEecCCcEEEEEe------------CCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE
Q 037288          297 -----SDILAQQVIHSGNVVLCGF------------RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ  357 (513)
Q Consensus       297 -----~~V~~l~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~  357 (513)
                           ..+..++|+|||+.+++++            .++.+.+||..+++....+..... ...+..+.+.+  .++..+
T Consensus        84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_          84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEES
T ss_pred             ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEeC
Confidence                 2356889999999887775            467888998876554221111000 01111111111  000000


Q ss_pred             ------------------------------------------------------------------------eecccCcc
Q 037288          358 ------------------------------------------------------------------------WFELKANI  365 (513)
Q Consensus       358 ------------------------------------------------------------------------w~~~~~~~  365 (513)
                                                                                              |+...+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (346)
T d1jmxb_         163 PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT  242 (346)
T ss_dssp             SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred             CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce
Confidence                                                                                    12111111


Q ss_pred             cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288          366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKL  445 (513)
Q Consensus       366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v  445 (513)
                      .......+...+..+ .+++++.+++.... +.|.+||+.  ..+.+..+. +...+..  ++|+|||++|++++.|+.|
T Consensus       243 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~v~v~d~~--~~~~~~~~~-~~~~~~~--va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         243 HTQEFADLTELYFTG-LRSPKDPNQIYGVL-NRLAKYDLK--QRKLIKAAN-LDHTYYC--VAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             EEEEEEECSSCEEEE-EECSSCTTEEEEEE-SEEEEEETT--TTEEEEEEE-CSSCCCE--EEECSSSSCEEEESBSSEE
T ss_pred             EEEEeecccceeEEE-EEeCCCCEEEEecC-CeEEEEECC--CCcEEEEEc-CCCCEEE--EEEcCCCCEEEEEeCCCcE
Confidence            111111222233333 44556666666554 589999986  444666665 3334555  8999999999999999999


Q ss_pred             EEEeCCCCeEEEEecCCCC
Q 037288          446 RIWSIRSGELVFEDKFSNS  464 (513)
Q Consensus       446 ~vwd~~~~~~~~~~~~~~~  464 (513)
                      ++||+.+++.+.++....+
T Consensus       316 ~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         316 AVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEETTTTEEEEEEECSSS
T ss_pred             EEEECccCCEEEEEECCCC
Confidence            9999999999999876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=6.5e-11  Score=111.77  Aligned_cols=274  Identities=9%  Similarity=0.088  Sum_probs=157.4

Q ss_pred             eeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCccc
Q 037288          124 DVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCA  203 (513)
Q Consensus       124 ~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~  203 (513)
                      .+.++++.++.|++|++....     .+...         ........+..+.|+|++..+.                  
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~-----~l~~~---------~~~~~~~~v~~la~spDG~~L~------------------   52 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEG-----ALTLT---------QVVDVPGQVQPMVVSPDKRYLY------------------   52 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTS-----CEEEE---------EEEECSSCCCCEEECTTSSEEE------------------
T ss_pred             EEEEECCCCCcEEEEEEcCCC-----CeEEE---------EEEcCCCCEeEEEEeCCCCEEE------------------
Confidence            467889999999999985432     11111         1111123356666666633321                  


Q ss_pred             cCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe--CCeEEE
Q 037288          204 TDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT--NLGAAM  281 (513)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~v  281 (513)
                                ++    +..++.+.+|++........         ......+...+..++|+|||++|+++.  ++.+.+
T Consensus        53 ----------v~----~~~d~~i~~~~i~~~~~~~~---------~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          53 ----------VG----VRPEFRVLAYRIAPDDGALT---------FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV  109 (333)
T ss_dssp             ----------EE----ETTTTEEEEEEECTTTCCEE---------EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ----------EE----ECCCCeEEEEEEeCCCCcEE---------EeeecccCCCceEEEEcCCCCEEeecccCCCceee
Confidence                      11    12456666776653322211         111223445677899999999988775  345889


Q ss_pred             EECCCCcEEEEe---eeCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCcccccc---ccccccCcCeEEEeeCC---
Q 037288          282 VDMETGMASWVC---RSKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSS---RAGRRHRIPYSRLQRND---  351 (513)
Q Consensus       282 wd~~~~~~~~~~---~~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~---~~~~~h~~~v~~v~~~~---  351 (513)
                      |+..........   .+...+.++.|+|+++.+++++. +..|.+|+..........   .....+......+.|++   
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         110 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             eccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            988776544333   35667899999999988777764 567999998765432200   01122344557788877   


Q ss_pred             eEEEeE--------eec--ccCcccceeEeec------CCCceEEEEEcCCCCEEEEE-ecCCeEEEEecCCCCccceEE
Q 037288          352 RVTNEQ--------WFE--LKANIWPSHTTFM------PSSISCLQSLQLYDQYFLAS-SMDGTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       352 ~~~s~~--------w~~--~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~-s~dg~i~lwd~~~~~~~~~~~  414 (513)
                      .++...        |..  .............      .........+++++++++.+ ..++.+.+|++.  .......
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~  267 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS--EDGSVLS  267 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSCCEE
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEc--CCCCEEE
Confidence            222111        222  1111111111111      11222334678898876655 457899999986  3332222


Q ss_pred             ec---CCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEE--eCCCCeEE
Q 037288          415 YE---GHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIW--SIRSGELV  456 (513)
Q Consensus       415 ~~---~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vw--d~~~~~~~  456 (513)
                      ..   .+......  ++|+|||++|++++. ++.|.+|  |..+|++.
T Consensus       268 ~~~~~~~~~~p~~--~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         268 KEGFQPTETQPRG--FNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEEECSSSCCC--EEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCeeE--EEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            22   22233334  889999999887765 5889999  55677653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=1.8e-12  Score=128.51  Aligned_cols=219  Identities=11%  Similarity=0.049  Sum_probs=140.8

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcE--EEEee---
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMA--SWVCR---  294 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~--~~~~~---  294 (513)
                      ..+|.+.+|+..+...            +..+..| ..+..++|+|||+++++++ |+++.+||+.+++.  ...+.   
T Consensus        39 ~d~g~v~v~D~~t~~v------------~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          39 RDAGQIALIDGSTYEI------------KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             TTTTEEEEEETTTCCE------------EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             cCCCEEEEEECCCCcE------------EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            3567788888764433            3445555 4699999999999999876 56799999988763  33333   


Q ss_pred             -eCCCeEEEEEecCCcEE-EEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288          295 -SKSDILAQQVIHSGNVV-LCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF  372 (513)
Q Consensus       295 -~~~~V~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~  372 (513)
                       +.+.+.+..|+|||+.| +++..++.|++||..+++...   .+..|...+..+.+                      .
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~---~~~~~~~~~~~~~~----------------------~  160 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK---IQSTRGMTYDEQEY----------------------H  160 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE---EEECCEECTTTCCE----------------------E
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee---eeccCCccccceec----------------------c
Confidence             34446667788899865 678889999999999887633   44444332222111                      1


Q ss_pred             cCCCceEEEEEcCCCCEEE-EEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 037288          373 MPSSISCLQSLQLYDQYFL-ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSI  450 (513)
Q Consensus       373 ~~~~v~~~~~~~~~~~~l~-s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~  450 (513)
                      ....... +.+++++..++ +...++.|.+||....+...+..+. +......  +.|+|+|+++++++. ++.+.++|.
T Consensus       161 ~~~~~~~-v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~--~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         161 PEPRVAA-ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHD--GGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             SCCCEEE-EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEE--EEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             CCCceeE-EEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-ccCcccc--ceECCCCCEEEEeccccceEEEeec
Confidence            1222222 36778888765 5556899999998622211333333 3333333  899999998877765 567999999


Q ss_pred             CCCeEEEEecC-----CCCCeEEEEEcCCCceEEee
Q 037288          451 RSGELVFEDKF-----SNSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       451 ~~~~~~~~~~~-----~~~~v~~v~~~p~~~~~~t~  481 (513)
                      .+++.+..+..     +........+.+.+.++++.
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  272 (432)
T d1qksa2         237 KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS  272 (432)
T ss_dssp             TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred             ccceEEEEeccCccccccCcccceecCCCCceeccc
Confidence            99988877532     22334444444444444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=4.3e-12  Score=120.04  Aligned_cols=240  Identities=8%  Similarity=-0.088  Sum_probs=150.9

Q ss_pred             CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEE-EEe-CCeEEEEECCCCcEEEEeeeC---
Q 037288          222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAV-IGT-NLGAAMVDMETGMASWVCRSK---  296 (513)
Q Consensus       222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~-s~s-~~~i~vwd~~~~~~~~~~~~~---  296 (513)
                      .++.+.+|++.+....          ....+..+...+.+++|+|||++++ +++ ++.|.+||+.+++.+......   
T Consensus         9 ~d~~v~v~D~~s~~~~----------~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVD----------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             TTTEEEEEETTTTEEE----------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             CCCEEEEEECCCCeEE----------EEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            5688888888754322          1112234456688999999999875 553 566999999999988776522   


Q ss_pred             ---CCeEEEEEecCCcEEEEEe------------CCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-
Q 037288          297 ---SDILAQQVIHSGNVVLCGF------------RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-  357 (513)
Q Consensus       297 ---~~V~~l~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-  357 (513)
                         ..+..++|+|+++.++++.            .+..+.+||........   .+. +...+..++|++   .+++++ 
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~-~~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK---AFE-APRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE---EEE-CCSSCCCEEECTTSSCEEEESS
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE---ecc-ccCCceEEEEcCCCCEEEEEcC
Confidence               2356889999999888776            35788899998876432   333 344577788888   444443 


Q ss_pred             ----eecccCcccceeEeecCCCce---------------------EE--EEEcCCCCEEEEEecCCeEEEEecCCCCcc
Q 037288          358 ----WFELKANIWPSHTTFMPSSIS---------------------CL--QSLQLYDQYFLASSMDGTVKLYDHRLTTRG  410 (513)
Q Consensus       358 ----w~~~~~~~~~~~~~~~~~~v~---------------------~~--~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~  410 (513)
                          |+...++...  .+.......                     ..  .....+...+..+..++.+.+||..  ...
T Consensus       155 ~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  230 (337)
T d1pbyb_         155 DLHVMDPEAGTLVE--DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE--TGE  230 (337)
T ss_dssp             SEEEEETTTTEEEE--EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT--TCC
T ss_pred             CcceeeeecCcEEE--EeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC--CCc
Confidence                5555443221  111110000                     00  0000111112222345568888875  333


Q ss_pred             -ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          411 -AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       411 -~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       ....+..+...+..  +.+++++.+++.+  ++.|++||+.+++.+..+.. ...+.+++|+|++..++.++.+
T Consensus       231 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         231 MAMREVRIMDVFYFS--TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EEEEEEEECSSCEEE--EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBS
T ss_pred             EEEEEecCCCcceEE--EEecccceEEEEc--cccEEEEECCCCcEEEEEcC-CCCEEEEEECCCCCEEEEEeCC
Confidence             23334445555444  7889999988766  58899999999999998865 4568899999997655544433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=6.2e-11  Score=111.94  Aligned_cols=250  Identities=8%  Similarity=0.056  Sum_probs=152.9

Q ss_pred             CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcE----EEEee
Q 037288          221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMA----SWVCR  294 (513)
Q Consensus       221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~----~~~~~  294 (513)
                      ..++.+.+|++......          .+.....|...|..++|+|||++|++++  ++.|++|++.....    .....
T Consensus        11 ~~~~~I~v~~~~~~~~l----------~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGAL----------TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             GGGTEEEEEEECTTSCE----------EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCe----------EEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc
Confidence            35677788877643221          1233456888999999999999886553  56799999876542    22223


Q ss_pred             eCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eeccc
Q 037288          295 SKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELK  362 (513)
Q Consensus       295 ~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~  362 (513)
                      ....+..++|+|||++|++++. ++.|.+|+........ ......+...+.++.+++   .++.+.        |+...
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE-EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeecccccccee-cccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            4556888999999998888875 7789999887665433 334455666777888887   344433        33332


Q ss_pred             CcccceeE---e--ecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCcc--ceEEec----CCCCceeEEEEEEc
Q 037288          363 ANIWPSHT---T--FMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRG--AVQSYE----GHVNSHTRIQLGVD  430 (513)
Q Consensus       363 ~~~~~~~~---~--~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~--~~~~~~----~h~~~v~~~~~~~s  430 (513)
                      ........   .  ........ ..+++++.+++... ..+...+|+.......  ......    ..........+.++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~-i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRH-MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  238 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEE-EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCcceeeeceeeeeecCCCccE-EEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence            22111111   1  11222333 47788888776654 4667888886522211  112221    12222223447889


Q ss_pred             CCCCEEEEE-eCCCcEEEEeCCCCeEEEE---ecCCCCCeEEEEEcCCCceEEeeC
Q 037288          431 QSERFVMSG-GEDCKLRIWSIRSGELVFE---DKFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       431 ~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      +++++++.. ..++.+.+|++........   .......+..++|+|++.+++.++
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~  294 (333)
T d1ri6a_         239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG  294 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             cccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence            999977655 5578899998876532222   223345678999999976544443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.41  E-value=9.9e-12  Score=117.98  Aligned_cols=215  Identities=9%  Similarity=0.001  Sum_probs=128.6

Q ss_pred             EEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEE-EEEeCCCeEEEEECCCCcccccccc-
Q 037288          262 ADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVV-LCGFRNGAIVTVDVRKRQRGCSSRA-  336 (513)
Q Consensus       262 ~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~-  336 (513)
                      ++|+++++++++++ +++|.+||+.+++.+..+.  +...+.+++|+|||+++ +++..++.|.+||+.+++....+.. 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46889999999886 5679999999999888766  45568899999999876 5556799999999998865431111 


Q ss_pred             --ccccCcCeEEEeeCC---eEEEeE-------------------eecccCcccc-eeEeecCCCceEEEEEcCCCCEEE
Q 037288          337 --GRRHRIPYSRLQRND---RVTNEQ-------------------WFELKANIWP-SHTTFMPSSISCLQSLQLYDQYFL  391 (513)
Q Consensus       337 --~~~h~~~v~~v~~~~---~~~s~~-------------------w~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~  391 (513)
                        ...+...+..++|+|   .++...                   |+...+.... ......+..+.. ..+++++..++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL-MRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC-EEECTTSCEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEE-EEecCCCEEEE
Confidence              112223456677877   333332                   3332222211 111111222222 23333443333


Q ss_pred             EEecCCeEEEEecCCC----------------------------------------------------------------
Q 037288          392 ASSMDGTVKLYDHRLT----------------------------------------------------------------  407 (513)
Q Consensus       392 s~s~dg~i~lwd~~~~----------------------------------------------------------------  407 (513)
                      +   ++.+.+||+...                                                                
T Consensus       161 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         161 A---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             E---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             e---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            2   123444444210                                                                


Q ss_pred             -Ccc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          408 -TRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       408 -~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       ... ....+..|...+.  .+.+++++.+++.+. ++.|.+||+.+++.+..+.. ...+.+++|+|++..+++.+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYF--TGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             TTCCEEEEEEEECSSCEE--EEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBS
T ss_pred             CCCceEEEEeecccceeE--EEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC-CCCEEEEEEcCCCCEEEEEeCC
Confidence             111 1112223333332  366777777777665 45799999999999988764 4568999999996555554433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=6.4e-11  Score=113.12  Aligned_cols=246  Identities=11%  Similarity=-0.023  Sum_probs=145.9

Q ss_pred             CCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe----------
Q 037288          206 GGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT----------  275 (513)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s----------  275 (513)
                      .|..+.+.+.........+.+++++..+...            +..+..+..+  .++|+|||++|++.+          
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~------------~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRV------------IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGE   75 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEE------------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcE------------EEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccC
Confidence            3444555444444444566777787764432            2234334333  689999999777542          


Q ss_pred             -CCeEEEEECCCCcEEEEeee--------CCCeEEEEEecCCcEEEEEe--CCCeEEEEECCCCccccccccccccCc--
Q 037288          276 -NLGAAMVDMETGMASWVCRS--------KSDILAQQVIHSGNVVLCGF--RNGAIVTVDVRKRQRGCSSRAGRRHRI--  342 (513)
Q Consensus       276 -~~~i~vwd~~~~~~~~~~~~--------~~~V~~l~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~h~~--  342 (513)
                       ++.|.+||+.+++.+..+..        ......++|+++++.++.+.  .+..+.+||..+.+...   .+..+..  
T Consensus        76 ~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  152 (355)
T d2bbkh_          76 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR---MLDVPDCYH  152 (355)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE---EEECCSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee---EEecCCcce
Confidence             45699999999998776541        12345689999998777664  46789999998776432   2111110  


Q ss_pred             -----CeEEEeeCC-----------------------------------------eEEEeE-------eecccCccccee
Q 037288          343 -----PYSRLQRND-----------------------------------------RVTNEQ-------WFELKANIWPSH  369 (513)
Q Consensus       343 -----~v~~v~~~~-----------------------------------------~~~s~~-------w~~~~~~~~~~~  369 (513)
                           ....+.+++                                         .++..+       |+...+......
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  232 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP  232 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEe
Confidence                 111111111                                         111111       332222211000


Q ss_pred             Eee-----------cCCCceEEEEEcCCCCEEEEEecC----------CeEEEEecCCCCccceEEecCCCCceeEEEEE
Q 037288          370 TTF-----------MPSSISCLQSLQLYDQYFLASSMD----------GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG  428 (513)
Q Consensus       370 ~~~-----------~~~~v~~~~~~~~~~~~l~s~s~d----------g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~  428 (513)
                      ...           .+... ....+++++..++....+          ..|.+||..  ....+..+.. ...+..  ++
T Consensus       233 ~~~~~~~~~~~~~~~p~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~--t~~~~~~~~~-~~~~~~--~a  306 (355)
T d2bbkh_         233 AVEALTEAERADGWRPGGW-QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK--TGERLAKFEM-GHEIDS--IN  306 (355)
T ss_dssp             CEESSCHHHHHTTEEECSS-SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT--TCCEEEEEEE-EEEECE--EE
T ss_pred             ccCCcccceEeeeeeccce-EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC--CCcEEEEecC-CCCEEE--EE
Confidence            000           00111 124667788877766544          368999987  4446666653 233444  89


Q ss_pred             EcCCCC--EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          429 VDQSER--FVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       429 ~s~~g~--~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      |+|||+  ++++++.|+.|++||+.+++.+.++..+......+.+.++
T Consensus       307 ~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             EcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            999997  4567788999999999999999999876665666665543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.38  E-value=4.1e-10  Score=108.32  Aligned_cols=200  Identities=11%  Similarity=-0.017  Sum_probs=128.7

Q ss_pred             cccCcEEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeee-----CC--CeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          254 SFKCTVWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRS-----KS--DILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~-----~~--~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      .+.....++.++++|+.+. +. .++.+.+||...+........     ..  ....+.+.+++.+ +..+.++.+.+|+
T Consensus       162 ~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~  240 (373)
T d2madh_         162 QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQAD  240 (373)
T ss_pred             EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEE
Confidence            4445677899999988543 33 567799999998876654431     11  1344455555544 4556789999999


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH  404 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~  404 (513)
                      ........ ......+......+.+.+             .........+.. ..+......+..+++...++.+.+||.
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~~~d~  305 (373)
T d2madh_         241 ISAAGATN-KAPIDALSGGRKADTWRP-------------GGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             cCCCeEEE-EEeeccccCcEEeeeecc-------------CcceeeEEecCC-CeEEEecCCCceEEeecCCCeEEEEEC
Confidence            98776433 333444444444433322             000000001111 111234455667777888899999998


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCE--EEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERF--VMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~--l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      .  ....+..+. +...+..  ++|+|||+.  +++++.|++|++||+.+++.+.++..+....+.++..++
T Consensus       306 ~--t~~~~~~~~-~~~~~~~--~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         306 L--VGQTSSQIS-LGHDVDA--ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             C--CCcEEEEec-CCCCeeE--EEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            6  444666665 4444544  899999984  468899999999999999999999887777888877653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.24  E-value=2.1e-09  Score=103.19  Aligned_cols=227  Identities=11%  Similarity=-0.023  Sum_probs=133.8

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEe------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe----------
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGT------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF----------  315 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~----------  315 (513)
                      ...+..++.+++++|||+.++...      ...+.+||..+++.+..+... ....++|+|||+.|++++          
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCcccccc
Confidence            456778999999999999887542      245899999999988776532 234799999999988875          


Q ss_pred             CCCeEEEEECCCCccccccccccccCcCeEEE-------eeCC---eEEEeEeecccCc----ccceeEeecCCCceEEE
Q 037288          316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL-------QRND---RVTNEQWFELKAN----IWPSHTTFMPSSISCLQ  381 (513)
Q Consensus       316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v-------~~~~---~~~s~~w~~~~~~----~~~~~~~~~~~~v~~~~  381 (513)
                      .++.|.+||..+.+...   .+..+......+       .|++   .++...|+.....    ........+.....+ .
T Consensus        95 ~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTC-Y  170 (373)
T ss_pred             cceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecccee-E
Confidence            46889999999887643   444454444333       3333   2222222211000    000111122222233 3


Q ss_pred             EEcCCCCE-EEEEecCCeEEEEecCCCCcc-----------------------------------------------ceE
Q 037288          382 SLQLYDQY-FLASSMDGTVKLYDHRLTTRG-----------------------------------------------AVQ  413 (513)
Q Consensus       382 ~~~~~~~~-l~s~s~dg~i~lwd~~~~~~~-----------------------------------------------~~~  413 (513)
                      .++++++. +++.+.|+.+.+||.......                                               .+.
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEE
Confidence            45566654 456777888888876421000                                               000


Q ss_pred             EecCCCCce--------eEEEEEEcCCCCEE----------EEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288          414 SYEGHVNSH--------TRIQLGVDQSERFV----------MSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR  475 (513)
Q Consensus       414 ~~~~h~~~v--------~~~~~~~s~~g~~l----------~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  475 (513)
                      .+..+....        ....+++++++..+          ++...++.+.+||+.+++.+..+.. ...+..++|+|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~-~~~~~~~a~spDG  329 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDG  329 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC-CCCeeEEEECCCC
Confidence            000000000        00113445555443          4456677899999999999988764 5668999999996


Q ss_pred             c--eEEeeCCC
Q 037288          476 S--MGPQIEGK  484 (513)
Q Consensus       476 ~--~~~t~~~~  484 (513)
                      .  ++++.+.+
T Consensus       330 ~~~l~vt~~~d  340 (373)
T d2madh_         330 GPDLYALSAGT  340 (373)
T ss_pred             CEEEEEEeCCC
Confidence            4  56666655

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=1e-09  Score=104.50  Aligned_cols=219  Identities=7%  Similarity=-0.041  Sum_probs=132.6

Q ss_pred             EEEEcCCCCEEEEEe------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE----------eCCCeEEEEE
Q 037288          261 TADFCTNPSQAVIGT------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG----------FRNGAIVTVD  324 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg----------~~dg~i~iwd  324 (513)
                      -.+.+|||+.+++..      .++|.+||..+++.+..+.. +....++|+|||+.|++.          ..|+.|++||
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            345678999877542      34599999999998877653 334479999999877754          4588999999


Q ss_pred             CCCCccccccccccccC----cCeEEEeeCC---eEEEeE---------eecccCcccceeE-----------------e
Q 037288          325 VRKRQRGCSSRAGRRHR----IPYSRLQRND---RVTNEQ---------WFELKANIWPSHT-----------------T  371 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~----~~v~~v~~~~---~~~s~~---------w~~~~~~~~~~~~-----------------~  371 (513)
                      +.+++....+.....+.    .....+.|++   .++...         |+...+.......                 +
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence            99887543111111111    1223455666   222222         3333322110000                 0


Q ss_pred             ---------ec--C----------------CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCC-----
Q 037288          372 ---------FM--P----------------SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHV-----  419 (513)
Q Consensus       372 ---------~~--~----------------~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~-----  419 (513)
                               ..  .                ..+.. ..+.+++..++.++.++.+++|++.......+.....+.     
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH-PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC-CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             cCCCCEEEEEecCCCeEEEEecccccceecceeee-ccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEe
Confidence                     00  0                00111 134556778888899999999998632111222222221     


Q ss_pred             -----CceeEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc--eEEeeC
Q 037288          420 -----NSHTRIQLGVDQSERFVMSGGED----------CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS--MGPQIE  482 (513)
Q Consensus       420 -----~~v~~~~~~~s~~g~~l~sg~~D----------g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~~t~~  482 (513)
                           .....  +++++++..++....+          ..|.+||+.+++.+..+.. ...+.+++|+|++.  ++++..
T Consensus       244 ~~~~p~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         244 DGWRPGGWQQ--VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             TTEEECSSSC--EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEET
T ss_pred             eeeeccceEE--EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEEC
Confidence                 11122  6788999988776544          3699999999999988765 34578999999964  567766


Q ss_pred             CC
Q 037288          483 GK  484 (513)
Q Consensus       483 ~~  484 (513)
                      .+
T Consensus       321 ~d  322 (355)
T d2bbkh_         321 GD  322 (355)
T ss_dssp             TT
T ss_pred             CC
Confidence            55

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=1.8e-09  Score=103.88  Aligned_cols=209  Identities=7%  Similarity=-0.074  Sum_probs=121.8

Q ss_pred             EeccccCcEEEEEEcCCCCEEEEEe-----------CCeEEEEECCCCcEEEEeeeC--------CCeEEEEEecCCcEE
Q 037288          251 LVASFKCTVWTADFCTNPSQAVIGT-----------NLGAAMVDMETGMASWVCRSK--------SDILAQQVIHSGNVV  311 (513)
Q Consensus       251 ~~~~h~~~V~~~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~~~~~--------~~V~~l~~~~~~~~l  311 (513)
                      .+..+...  .++|+|||+.+++.+           ++.|.+||..+++.+..+.-+        .....++|+|||++|
T Consensus        61 ~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l  138 (368)
T d1mdah_          61 HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL  138 (368)
T ss_dssp             EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCE
T ss_pred             EEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEE
Confidence            34444444  589999999888654           355999999999987766511        123568999999888


Q ss_pred             EEEe-CCCeEEEEECCCCccccccccccccC-------cCeEEEeeCC--e--EEEeE----------------------
Q 037288          312 LCGF-RNGAIVTVDVRKRQRGCSSRAGRRHR-------IPYSRLQRND--R--VTNEQ----------------------  357 (513)
Q Consensus       312 ~sg~-~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~~~--~--~~s~~----------------------  357 (513)
                      +++. .++.+.+||+.+.+...   .+..+.       .....+.+++  .  ++...                      
T Consensus       139 ~va~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (368)
T d1mdah_         139 LFFLFGSSAAAGLSVPGASDDQ---LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ  215 (368)
T ss_dssp             EEEECSSSCEEEEEETTTEEEE---EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred             EEEeCCCCeEEEEECCCCcEeE---EeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccccee
Confidence            7775 57999999998876533   221111       1111122222  0  00000                      


Q ss_pred             --------------------eecccCcccceeEe-----------ecCCCceEEEEEcCCCCEEEEEecC---------C
Q 037288          358 --------------------WFELKANIWPSHTT-----------FMPSSISCLQSLQLYDQYFLASSMD---------G  397 (513)
Q Consensus       358 --------------------w~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~s~s~d---------g  397 (513)
                                          ++...+........           ..+.... ...+++++..+++...+         .
T Consensus       216 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~a~~~~~~~~~v~~~~~~~~~~~~~~  294 (368)
T d1mdah_         216 AAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ-MVAKLKNTDGIMILTVEHSRSCLAAAE  294 (368)
T ss_dssp             CEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS-CEEEETTTTEEEEEEEECSSCTTSCEE
T ss_pred             ecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCce-eEEEcCCCCEEEEEecCCCceeecCCc
Confidence                                00000000000000           0000111 13566777766655332         2


Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-E-EEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEE
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-F-VMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCW  471 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~-l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~  471 (513)
                      .|.+||..  ..+.+..+.. ...+..  ++|+|||+ + ++++..|+.|++||..+++.+.++..... .+.|++
T Consensus       295 ~v~v~D~~--t~~~~~~~~~-~~~~~~--~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         295 NTSSVTAS--VGQTSGPISN-GHDSDA--IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EEEEEESS--SCCEEECCEE-EEEECE--EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             eEEEEECC--CCcEeEEecC-CCceeE--EEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            48899986  4445555542 233333  89999997 3 45677899999999999999999875433 455544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.80  E-value=7.8e-08  Score=92.94  Aligned_cols=214  Identities=9%  Similarity=-0.005  Sum_probs=126.7

Q ss_pred             cccCcEEEEEEcCCCC--EEEEEeCCeE------------------EEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEE
Q 037288          254 SFKCTVWTADFCTNPS--QAVIGTNLGA------------------AMVDMETGMASWVCRSKSDILAQQVIHSGNVVLC  313 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~--~l~s~s~~~i------------------~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~s  313 (513)
                      .+......++|+|+|+  +++..++..+                  ..+|..+.+....+........++|+|+|+++++
T Consensus       113 P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~v  192 (441)
T d1qnia2         113 PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATS  192 (441)
T ss_dssp             TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEE
T ss_pred             CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEE
Confidence            4567899999999998  5555554443                  4589999888887777778899999999999988


Q ss_pred             EeCCC-eEEEEECCCCccccc-----------------cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC
Q 037288          314 GFRNG-AIVTVDVRKRQRGCS-----------------SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS  375 (513)
Q Consensus       314 g~~dg-~i~iwd~~~~~~~~~-----------------~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~  375 (513)
                      ++.+. .+..+|..+......                 .....+  ..+..+.          .....  .....+....
T Consensus       193 t~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~--~~v~vvd----------~~~~~--~v~~~IPvgk  258 (441)
T d1qnia2         193 TCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD--SKVPVVD----------GRGES--EFTRYIPVPK  258 (441)
T ss_dssp             EESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT--CCCCEEE----------CSSSC--SSEEEECCBS
T ss_pred             EecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC--CCcEEEE----------cccCC--ceEEEEeCCC
Confidence            87663 222222211111000                 000000  0111111          11111  1122333333


Q ss_pred             CceEEEEEcCCCCEEEE-EecCCeEEEEecCCCCc------cceEEecCCCC-ceeEEEEEEcCCCCEEEEEeCCCcEEE
Q 037288          376 SISCLQSLQLYDQYFLA-SSMDGTVKLYDHRLTTR------GAVQSYEGHVN-SHTRIQLGVDQSERFVMSGGEDCKLRI  447 (513)
Q Consensus       376 ~v~~~~~~~~~~~~l~s-~s~dg~i~lwd~~~~~~------~~~~~~~~h~~-~v~~~~~~~s~~g~~l~sg~~Dg~v~v  447 (513)
                      .... +.++|+|+++++ +..+++|.+||+.+...      .....+.++.. ....+...|+++|..+.+...|..|..
T Consensus       259 sPhG-v~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~k  337 (441)
T d1qnia2         259 NPHG-LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK  337 (441)
T ss_dssp             SCCC-EEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CccC-ceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEE
Confidence            3333 478999998765 56799999999863110      00111111111 111244689999988889999999999


Q ss_pred             EeCCC----------CeEEEEe-----cCCCCCeEEEEEcCCCceEEeeC
Q 037288          448 WSIRS----------GELVFED-----KFSNSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       448 wd~~~----------~~~~~~~-----~~~~~~v~~v~~~p~~~~~~t~~  482 (513)
                      |++..          ...+..+     .+|...+.+.+++|++.+|++..
T Consensus       338 w~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             eccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            99741          1233334     34555566678899998888874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.79  E-value=2.7e-08  Score=98.77  Aligned_cols=140  Identities=9%  Similarity=-0.006  Sum_probs=99.3

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee------eCCCeEEEEEecCCcEEEEEeC---------CCeEEEEEC
Q 037288          261 TADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR------SKSDILAQQVIHSGNVVLCGFR---------NGAIVTVDV  325 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~------~~~~V~~l~~~~~~~~l~sg~~---------dg~i~iwd~  325 (513)
                      .+.|.+++.++.. .++.+.+||+.+++...++.      +...|.+++|+|||+.|+.++.         ++.+.+||+
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            4678888887754 46679999999999877665      3356999999999998888743         578899999


Q ss_pred             CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288          326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR  405 (513)
Q Consensus       326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~  405 (513)
                      .+++.    ..+..|...+..                                  ..|+|+|+.+|... ++.+.+|+..
T Consensus       100 ~~~~~----~~l~~~~~~~~~----------------------------------~~~SPDG~~ia~~~-~~~l~~~~~~  140 (470)
T d2bgra1         100 NKRQL----ITEERIPNNTQW----------------------------------VTWSPVGHKLAYVW-NNDIYVKIEP  140 (470)
T ss_dssp             TTTEE----CCSSCCCTTEEE----------------------------------EEECSSTTCEEEEE-TTEEEEESST
T ss_pred             CCCcc----cccccCCccccc----------------------------------cccccCcceeeEee-cccceEEECC
Confidence            98763    345555555544                                  46788999999864 6789999985


Q ss_pred             CCCccceEEecCCC------------------CceeEEEEEEcCCCCEEEEEeCCCc
Q 037288          406 LTTRGAVQSYEGHV------------------NSHTRIQLGVDQSERFVMSGGEDCK  444 (513)
Q Consensus       406 ~~~~~~~~~~~~h~------------------~~v~~~~~~~s~~g~~l~sg~~Dg~  444 (513)
                        .....+....+.                  +....  +.|||||++|+....|.+
T Consensus       141 --~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~--~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         141 --NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA--LWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             --TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC--EEECTTSSEEEEEEEECT
T ss_pred             --CCceeeeeeccCCCcccccccceeeeeeecCCccc--cEECCCCCccceeEecCC
Confidence              222332221111                  11222  679999999998876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=3.9e-06  Score=75.72  Aligned_cols=215  Identities=10%  Similarity=0.023  Sum_probs=122.8

Q ss_pred             eccccCcEEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-CCeEEEEECC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVR  326 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~  326 (513)
                      +..+...+...+|||||+.||...+.    .+.+.+..++.......+........|+|+|..++.... ++...++...
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence            45566788899999999999966432    277778888887777778888999999999976665543 4333333322


Q ss_pred             CCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      .....  ...............+.+    .+++..       |....... ................++|+++.++..+.
T Consensus       114 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         114 LASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             TTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-CCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             ccccc--ceeeeeccccccccccccccccceecccccCCceEeeeecccc-cceeeecccccccccccccccceeEEEee
Confidence            22111  111222222222222222    111111       11111110 11112222233344578999998887766


Q ss_pred             C-CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecCCCCCeEEEEE
Q 037288          396 D-GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFEDKFSNSVPSAVCW  471 (513)
Q Consensus       396 d-g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~  471 (513)
                      + +...+|.... ........ .+......  ..|+|||++|+..+.   ...|+++++..+... .+......+...+|
T Consensus       191 ~~~~~~i~~~~~-~~~~~~~~-~~~~~~~~--p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~~g~~~~p~W  265 (269)
T d2hqsa1         191 NGGQQHIAKQDL-ATGGVQVL-SSTFLDET--PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPATDGQVKFPAW  265 (269)
T ss_dssp             CSSCEEEEEEET-TTCCEEEC-CCSSSCEE--EEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCSSSEEEEEEE
T ss_pred             cCCceeeeEeec-ccccceEe-ecCccccc--eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeCCCCcEEeEEe
Confidence            4 4444444431 22233333 23333333  689999999875544   346899999877654 45555667888999


Q ss_pred             cCC
Q 037288          472 RTQ  474 (513)
Q Consensus       472 ~p~  474 (513)
                      +|-
T Consensus       266 SP~  268 (269)
T d2hqsa1         266 SPY  268 (269)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.65  E-value=6.4e-06  Score=76.08  Aligned_cols=221  Identities=7%  Similarity=0.001  Sum_probs=131.3

Q ss_pred             cEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc
Q 037288          258 TVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  336 (513)
                      .+..+++.|||+++++.. +++|..||.. +...........+.+++|.++|+++++...++.+..++............
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            577899999999998875 5568888865 44445556677899999999999999998889998888755432210111


Q ss_pred             ccccCcCeEEEeeCC--eEEEeE------ee--cccCccccee------Eeec---CCCceEEEEEcCCCCEEEEEecCC
Q 037288          337 GRRHRIPYSRLQRND--RVTNEQ------WF--ELKANIWPSH------TTFM---PSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~--~~~s~~------w~--~~~~~~~~~~------~~~~---~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      ..........+.+.+  .++...      |.  ...+......      ....   ......+ .+. .+.++++.+..+
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi-~~~-~~~l~~~~~~~~  185 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-KRF-GNFLYVSNTEKM  185 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-EEE-TTEEEEEETTTT
T ss_pred             ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc-ccc-CCceeeecCCCC
Confidence            122344567777776  333332      22  2222111000      0000   1112222 232 344555667788


Q ss_pred             eEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEecCCCCCeEEEEE---c
Q 037288          398 TVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL-VFEDKFSNSVPSAVCW---R  472 (513)
Q Consensus       398 ~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~-~~~~~~~~~~v~~v~~---~  472 (513)
                      .|..++....... ....+.... ....  ++++++|++.++...++.|..++...... +......-..+++++|   +
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~-~pdg--ia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~  262 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQT-NIDD--FAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE  262 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESC-CCSS--EEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred             eEEeccccccccccccccccCCC-CCcc--eEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCC
Confidence            8888887521111 122222111 1223  78999999888888899999998754432 2223333445899999   5


Q ss_pred             CC-CceEEeeCCC
Q 037288          473 TQ-RSMGPQIEGK  484 (513)
Q Consensus       473 p~-~~~~~t~~~~  484 (513)
                      ++ ..+++++...
T Consensus       263 ~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         263 GDCTAIYVVTNGG  275 (302)
T ss_dssp             TTTTEEEEEECTT
T ss_pred             CCCCEEEEECCCC
Confidence            55 4577766654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.58  E-value=1.1e-07  Score=94.31  Aligned_cols=141  Identities=9%  Similarity=-0.006  Sum_probs=102.8

Q ss_pred             EEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc--ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288          300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS--RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI  377 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v  377 (513)
                      ..+.|.+++.+++.  .|+.+.+||+.+++....+  ..+..|...|.+                               
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~-------------------------------   66 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSIND-------------------------------   66 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCE-------------------------------
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccce-------------------------------
Confidence            46789999987764  5788999999988754311  234444444544                               


Q ss_pred             eEEEEEcCCCCEEEEEec---------CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288          378 SCLQSLQLYDQYFLASSM---------DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW  448 (513)
Q Consensus       378 ~~~~~~~~~~~~l~s~s~---------dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw  448 (513)
                         ..|+|||++|+.++.         ++.+.+||+.   .+.+..+..|...+..  ..|||||+.||... |+.+++|
T Consensus        67 ---~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~---~~~~~~l~~~~~~~~~--~~~SPDG~~ia~~~-~~~l~~~  137 (470)
T d2bgra1          67 ---YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN---KRQLITEERIPNNTQW--VTWSPVGHKLAYVW-NNDIYVK  137 (470)
T ss_dssp             ---EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT---TTEECCSSCCCTTEEE--EEECSSTTCEEEEE-TTEEEEE
T ss_pred             ---eEECCCCCEEEEEECCcceeeeccCceEEEEECC---CCcccccccCCccccc--cccccCcceeeEee-cccceEE
Confidence               467889999998753         5678899995   4556667888888766  89999999999865 7789999


Q ss_pred             eCCCCeEEEEecCC------------------CCCeEEEEEcCCCceEEeeC
Q 037288          449 SIRSGELVFEDKFS------------------NSVPSAVCWRTQRSMGPQIE  482 (513)
Q Consensus       449 d~~~~~~~~~~~~~------------------~~~v~~v~~~p~~~~~~t~~  482 (513)
                      ++.+++........                  .+...++.|+|++..+|...
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            99999876653221                  22346688999987777654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=6.9e-06  Score=74.02  Aligned_cols=185  Identities=9%  Similarity=-0.009  Sum_probs=118.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc
Q 037288          258 TVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA  336 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  336 (513)
                      ....+++++++.++++...+. +++++..++.............++++.++++++++-..+..+..++........  ..
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~--~~  135 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--LP  135 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE--CC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeee--ee
Confidence            456788999999888776665 555555555544333344568899999999988877677777777765443211  00


Q ss_pred             ccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec
Q 037288          337 GRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE  416 (513)
Q Consensus       337 ~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~  416 (513)
                      ..+                                  ...... .++.++++.+++...++.|..+|..   ......+.
T Consensus       136 ~~~----------------------------------~~~p~~-i~~~~~g~~~v~~~~~~~i~~~d~~---~~~~~~~~  177 (260)
T d1rwia_         136 FTG----------------------------------LNDPDG-VAVDNSGNVYVTDTDNNRVVKLEAE---SNNQVVLP  177 (260)
T ss_dssp             CCS----------------------------------CCSCCE-EEECTTCCEEEEEGGGTEEEEECTT---TCCEEECC
T ss_pred             ecc----------------------------------cCCcce-eeecCCCCEeeeccccccccccccc---cceeeeee
Confidence            000                                  011122 3567789988888888899999974   22222332


Q ss_pred             -CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          417 -GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       417 -~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                       ......  ..++++++|+++++....+.|..++.............-....++++++++.++++...+
T Consensus       178 ~~~~~~p--~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         178 FTDITAP--WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             CSSCCSE--EEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             ccccCCC--ccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence             222333  348889999988888888889988865543222222223457899999998788775543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.48  E-value=9.6e-06  Score=78.01  Aligned_cols=220  Identities=7%  Similarity=-0.010  Sum_probs=126.7

Q ss_pred             cccCcEEEEEEcCCCCEEEEE--eCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCc--EEEEEeCCCe--------
Q 037288          254 SFKCTVWTADFCTNPSQAVIG--TNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGN--VVLCGFRNGA--------  319 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~--s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~--~l~sg~~dg~--------  319 (513)
                      .|.-........|||++|.+.  .++.|.++|+.++++..++.  ....+..++|+|+|+  ++++++.+..        
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            344566667778999988766  45679999999998877665  456799999999997  5555554432        


Q ss_pred             ---------EEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeEeecccCcccc------eeEeecCCCceEEE
Q 037288          320 ---------IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQWFELKANIWP------SHTTFMPSSISCLQ  381 (513)
Q Consensus       320 ---------i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~~~~~~~------~~~~~~~~~v~~~~  381 (513)
                               +..+|..+.+...   .+.. ......++++|   .++..+++........      ...+.... .....
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~---qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~  223 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAW---QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIA  223 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEE---EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHH
T ss_pred             cccccccceEEeecCccceeeE---EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC-ccceE
Confidence                     3445665544321   1111 12345566666   3444432221111000      00000000 00001


Q ss_pred             EEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeE-----
Q 037288          382 SLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM-SGGEDCKLRIWSIRSGEL-----  455 (513)
Q Consensus       382 ~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~-sg~~Dg~v~vwd~~~~~~-----  455 (513)
                      .+.++|+++.++ .++.+.+++..  ....+..+..+..+. .  +.++|||++++ ++..|++|.|||+.+.+.     
T Consensus       224 ~~~~dGk~~~v~-~~~v~vvd~~~--~~~v~~~IPvgksPh-G--v~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~  297 (441)
T d1qnia2         224 AAVKAGNFKTIG-DSKVPVVDGRG--ESEFTRYIPVPKNPH-G--LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK  297 (441)
T ss_dssp             HHHHTTCCBCCT-TCCCCEEECSS--SCSSEEEECCBSSCC-C--EEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred             EEecCCCEEEeC-CCCcEEEEccc--CCceEEEEeCCCCcc-C--ceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence            245677766543 35667777654  334666676655542 3  78899999875 566799999999865321     


Q ss_pred             ------EEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          456 ------VFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       456 ------~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                            +.......-.....+|.+++..+.+...|
T Consensus       298 ~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         298 IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             CCcceEEEeecccccCcccceecCCceEEEccccc
Confidence                  11111112224556899988777776655

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.38  E-value=0.00027  Score=65.13  Aligned_cols=222  Identities=9%  Similarity=0.051  Sum_probs=132.4

Q ss_pred             cEEEEEEcCCCCEEEEEe--------CCeEEEEECCCCcEEEEee-----eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288          258 TVWTADFCTNPSQAVIGT--------NLGAAMVDMETGMASWVCR-----SKSDILAQQVIHSGNVVLCGFRNGAIVTVD  324 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s--------~~~i~vwd~~~~~~~~~~~-----~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd  324 (513)
                      ..-.++|.++|+++++..        +++|..||..++.......     ....-..++|.++++.++++.....|..+|
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            456778999999887643        3458888998887544432     112357899999999888888778888999


Q ss_pred             CCCCccccccccccccC-cCeEEEeeCC--eEEEeE-------eecccCcccceeE---eecCCCce---------EEEE
Q 037288          325 VRKRQRGCSSRAGRRHR-IPYSRLQRND--RVTNEQ-------WFELKANIWPSHT---TFMPSSIS---------CLQS  382 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~-~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~---~~~~~~v~---------~~~~  382 (513)
                      ..............+.. .....+.+.+  .+..+.       |+.......+...   +.....+.         .-..
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~  178 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIA  178 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeE
Confidence            87654322011111111 1246677777  332221       1111100000000   11111111         1135


Q ss_pred             EcCCCC-----EEEEEecCCeEEEEecCCCCccce------EEecCCC-CceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288          383 LQLYDQ-----YFLASSMDGTVKLYDHRLTTRGAV------QSYEGHV-NSHTRIQLGVDQSERFVMSGGEDCKLRIWSI  450 (513)
Q Consensus       383 ~~~~~~-----~l~s~s~dg~i~lwd~~~~~~~~~------~~~~~h~-~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~  450 (513)
                      +++++.     ++++-+..+.|..||+.  ..+.+      ..+.+.. ....  .++++.+|++.++....+.|.+||.
T Consensus       179 ~~~d~d~~~~~lyv~d~~~~~i~~~d~~--~~g~~~~~~~~~~~~~~~~~~pd--GiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         179 VRHMNDGRPYQLIVAETPTKKLWSYDIK--GPAKIENKKVWGHIPGTHEGGAD--GMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEECTTSCEEEEEEEETTTTEEEEEEEE--ETTEEEEEEEEEECCCCSSCEEE--EEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ECCCCCcceeEEEEEeecccceEEeecc--CccccceeeEEEEccccccccce--eeEEecCCcEEEEEcCCCEEEEEeC
Confidence            555553     44555678889999875  33222      1222211 1122  3788999998888878899999999


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcCCC-ceEEeeCC
Q 037288          451 RSGELVFEDKFSNSVPSAVCWRTQR-SMGPQIEG  483 (513)
Q Consensus       451 ~~~~~~~~~~~~~~~v~~v~~~p~~-~~~~t~~~  483 (513)
                      ..++.+..+......+++++|.|++ .+++|...
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence            8888777766666678999999985 57777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.35  E-value=1.6e-06  Score=82.50  Aligned_cols=194  Identities=8%  Similarity=-0.129  Sum_probs=119.5

Q ss_pred             ccCcEEEEEEcCCCCE--EEEEe--C--CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe----------CCC
Q 037288          255 FKCTVWTADFCTNPSQ--AVIGT--N--LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF----------RNG  318 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~--l~s~s--~--~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~----------~dg  318 (513)
                      +.++...++..++++.  ++...  +  ..+.+||..+++.+........ ..++|+|||+.|++.+          .|+
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-SLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-CEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-CcceECCCCCEEEEEcccCccccccccCC
Confidence            3445555666778874  33222  2  2377889999998777663332 3688999999888754          478


Q ss_pred             eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCC
Q 037288          319 AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDG  397 (513)
Q Consensus       319 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg  397 (513)
                      .|.+||..+.+...   .+..+......                          ....... ..|+|+|++|+++. .++
T Consensus        97 ~v~v~D~~t~~~~~---~i~~p~~~~~~--------------------------~g~~p~~-~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          97 YVEVFDPVTFLPIA---DIELPDAPRFS--------------------------VGPRVHI-IGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEEECTTTCCEEE---EEEETTSCSCC--------------------------BSCCTTS-EEECTTSSCEEEEECSSS
T ss_pred             eEEEEECCCCcEee---eecCCccceec--------------------------ccCCccc-eEECCCCCEEEEEeCCCC
Confidence            89999999887533   22222111100                          0000011 47899999998876 479


Q ss_pred             eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE------ecCCCCCeEEEEE
Q 037288          398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE------DKFSNSVPSAVCW  471 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~------~~~~~~~v~~v~~  471 (513)
                      .+.+||+.  ....+..+..+......     ......+++.+.||.+.+|++........      +..+...+..+.+
T Consensus       147 ~v~~~d~~--~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (368)
T d1mdah_         147 AAAGLSVP--GASDDQLTKSASCFHIH-----PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA  219 (368)
T ss_dssp             CEEEEEET--TTEEEEEEECSSCCCCE-----EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEE
T ss_pred             eEEEEECC--CCcEeEEeeccCcceEc-----cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccc
Confidence            99999997  44566666655433211     11244566777888888888765543222      1223344556777


Q ss_pred             cCCCceEEeeCCCee
Q 037288          472 RTQRSMGPQIEGKIH  486 (513)
Q Consensus       472 ~p~~~~~~t~~~~~~  486 (513)
                      .+++..+.+.++++.
T Consensus       220 ~~~g~~~~~~~~~v~  234 (368)
T d1mdah_         220 NYPGMLVWAVASSIL  234 (368)
T ss_dssp             TTTTEEEECBSSCCE
T ss_pred             ccCcEEEEecCCCEE
Confidence            888777777766654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.34  E-value=0.00018  Score=65.65  Aligned_cols=189  Identities=10%  Similarity=-0.006  Sum_probs=120.4

Q ss_pred             cccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC-----CCeEEEEEecCCcEEEEEeCC----CeEEEEE
Q 037288          254 SFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK-----SDILAQQVIHSGNVVLCGFRN----GAIVTVD  324 (513)
Q Consensus       254 ~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-----~~V~~l~~~~~~~~l~sg~~d----g~i~iwd  324 (513)
                      .....+.++++.++|.++++ +.+++.++|..+++........     ..+..+.+.|+|++.++...+    +.-.+|.
T Consensus        56 ~~~~~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          56 ALPFMGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             ECSSCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             ECCCCcEEEEEecCCCEEEE-EeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            34567889999999987765 4568999999999866554421     237888899999876665322    2233343


Q ss_pred             CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE-EEecCCeEEEEe
Q 037288          325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL-ASSMDGTVKLYD  403 (513)
Q Consensus       325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~lwd  403 (513)
                      +..++...                                      +...-.+..-..++++++.+. +-+..+.|..|+
T Consensus       135 ~~~g~~~~--------------------------------------~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1         135 VAKGKVTK--------------------------------------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             EETTEEEE--------------------------------------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             ecCCcEEE--------------------------------------EeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence            33332110                                      000111222356788887655 455678899888


Q ss_pred             cCCCCcc------ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc-CC-C
Q 037288          404 HRLTTRG------AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR-TQ-R  475 (513)
Q Consensus       404 ~~~~~~~------~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~-p~-~  475 (513)
                      +......      ....+.+..+....  ++++.+|++.++.-..+.|..|| .+|+++..+......++++||. ++ .
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG--~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDG--SVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEE--EEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             ecccccccccceEEEeccCcccccccc--eEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCC
Confidence            7521111      11122233333334  78899999877777788999999 5788888887766679999996 55 6


Q ss_pred             ceEEeeCCC
Q 037288          476 SMGPQIEGK  484 (513)
Q Consensus       476 ~~~~t~~~~  484 (513)
                      .+++|+...
T Consensus       254 ~LyvTta~~  262 (295)
T d2ghsa1         254 RLLVTSARE  262 (295)
T ss_dssp             EEEEEEBCT
T ss_pred             EEEEEECCc
Confidence            788876654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.34  E-value=0.00086  Score=61.73  Aligned_cols=219  Identities=8%  Similarity=0.032  Sum_probs=128.9

Q ss_pred             cCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeC----CCeEEEEECCCCc
Q 037288          256 KCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFR----NGAIVTVDVRKRQ  329 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~----dg~i~iwd~~~~~  329 (513)
                      ...+-.++|.++|+++++- .++.|..||..++...... ........++|++||+++++...    .+.+...|.....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            3456789999999977766 4556888998877654443 35556899999999998877643    2345555554443


Q ss_pred             cccccccccccCcCeEEEeeCC--eEEEeEeecccC-----------cccceeEeecCCCceEEEEEcCCCCEE-EEEec
Q 037288          330 RGCSSRAGRRHRIPYSRLQRND--RVTNEQWFELKA-----------NIWPSHTTFMPSSISCLQSLQLYDQYF-LASSM  395 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~--~~~s~~w~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~  395 (513)
                      ... ...-..-......+.+.+  .++.+.+.....           .......+...-....-+.++++++.| ++-+.
T Consensus       119 ~~~-~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         119 LQD-IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             CEE-EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eee-eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            211 111111123456677766  444332111000           000011111111122235789999866 45556


Q ss_pred             CCeEEEEecCCCCcc-ceEE--------ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC----
Q 037288          396 DGTVKLYDHRLTTRG-AVQS--------YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS----  462 (513)
Q Consensus       396 dg~i~lwd~~~~~~~-~~~~--------~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~----  462 (513)
                      .+.|..||+.  ... ....        +.+... -  -.++++++|++.++...++.|.+||- +|+.+..+...    
T Consensus       198 ~~~I~~~d~~--~~g~~~~~~~~~~~~~~~~~~~-P--dGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         198 ANRLHRIALE--DDGVTIQPFGATIPYYFTGHEG-P--DSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             GTEEEEEEEC--TTSSSEEEEEEEEEEECCSSSE-E--EEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred             CCceEEEEEc--CCCceeccccceeeeccCCccc-e--eeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC
Confidence            8899999986  222 1111        111111 1  23788999998888888999999994 78888876432    


Q ss_pred             --CCCeEEEEEcCCC-ceEEee
Q 037288          463 --NSVPSAVCWRTQR-SMGPQI  481 (513)
Q Consensus       463 --~~~v~~v~~~p~~-~~~~t~  481 (513)
                        ...+++++|.+.. .++++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcCceeeeEEEeCCCCEEEEEc
Confidence              3357899999884 444444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.26  E-value=0.0014  Score=58.95  Aligned_cols=222  Identities=11%  Similarity=0.047  Sum_probs=130.5

Q ss_pred             cEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeC-------CCeEEEEEecCC-cEEEE-EeCCCeEEEEECCC
Q 037288          258 TVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSK-------SDILAQQVIHSG-NVVLC-GFRNGAIVTVDVRK  327 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~-------~~V~~l~~~~~~-~~l~s-g~~dg~i~iwd~~~  327 (513)
                      .-..++++++|+++++- .+..|++||.+ |..+..+...       ..-..+++..+. ..+++ .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            45799999999988775 45669999976 6655555421       123556666554 33333 34456777777643


Q ss_pred             Cccccccccc-cccCcCeEEEeeCC--eEEEeE-----eecccCcccceeEeec--CCCceEEEEEcCCCCEEEEEecCC
Q 037288          328 RQRGCSSRAG-RRHRIPYSRLQRND--RVTNEQ-----WFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFLASSMDG  397 (513)
Q Consensus       328 ~~~~~~~~~~-~~h~~~v~~v~~~~--~~~s~~-----w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~s~dg  397 (513)
                      ...    ..+ .........++..+  .++...     .............+..  .......+++.++++.+++....+
T Consensus       103 ~~~----~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         103 QFV----RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             CEE----EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             cce----eecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeecccc
Confidence            321    122 12234455666655  322222     1111111111122211  112223346778888888888899


Q ss_pred             eEEEEecCCCCccceEEec--CCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecCC--CCCeEEEEEc
Q 037288          398 TVKLYDHRLTTRGAVQSYE--GHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSIRSGELVFEDKFS--NSVPSAVCWR  472 (513)
Q Consensus       398 ~i~lwd~~~~~~~~~~~~~--~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~~~~~~~~~~~~--~~~v~~v~~~  472 (513)
                      .|++||.   ....+.++.  +.....  ..++++++|+++++-.. ++.|.+|+ .+|+.+.++...  ......|+..
T Consensus       179 ~V~~~d~---~G~~~~~~g~~g~~~~P--~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         179 CVKVFNY---EGQYLRQIGGEGITNYP--IGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             EEEEEET---TCCEEEEESCTTTSCSE--EEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEE
T ss_pred             ceeeeec---CCceeeeecccccccCC--cccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEe
Confidence            9999997   345666663  233333  34889999998877654 45799998 578887776432  3457899999


Q ss_pred             CCCceEEeeCCCeeeeec
Q 037288          473 TQRSMGPQIEGKIHEEFD  490 (513)
Q Consensus       473 p~~~~~~t~~~~~~~~~~  490 (513)
                      |++.+++++...--+.|.
T Consensus       253 ~dG~l~V~~~n~~v~~fr  270 (279)
T d1q7fa_         253 DDGSVVLASKDYRLYIYR  270 (279)
T ss_dssp             TTTEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEeCCCeEEEEE
Confidence            999888877543224343

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=0.00034  Score=62.34  Aligned_cols=190  Identities=12%  Similarity=0.020  Sum_probs=108.2

Q ss_pred             eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC---CeEEEEECCCCccccccccccccCcCeEEEeeCC---
Q 037288          278 GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN---GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---  351 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---  351 (513)
                      .|.|.|........+..+...+.+.+|+|||+.||-....   ..+.+.+.....    ...+..+........|+|   
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc----eeEEeeeecccccceecCCCC
Confidence            3677788877777777888889999999999888755433   246666666554    335566777788888988   


Q ss_pred             eEEEeEe--------ecccCcccceeEeecCCCceEEEEEcCCCCEEE-EEecCCeEEEEecCCCCccceEEecCCCCce
Q 037288          352 RVTNEQW--------FELKANIWPSHTTFMPSSISCLQSLQLYDQYFL-ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH  422 (513)
Q Consensus       352 ~~~s~~w--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v  422 (513)
                      .++....        ....... ................+++++..++ +...+|...+|.... .......+..+....
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~-~~~~~~~~~~~~~~~  173 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI-NGGAPQRITWEGSQN  173 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-TSSCCEECCCSSSEE
T ss_pred             eeeEeeecCCccceeecccccc-cceeeeeccccccccccccccccceecccccCCceEeeeec-ccccceeeecccccc
Confidence            3333221        1111110 1111111222222334555655544 444555544444321 223344444444433


Q ss_pred             eEEEEEEcCCCCEEEEEeCCC-c--EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288          423 TRIQLGVDQSERFVMSGGEDC-K--LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM  477 (513)
Q Consensus       423 ~~~~~~~s~~g~~l~sg~~Dg-~--v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  477 (513)
                        ....++|++++++..+.++ .  +.+.+...+..  .............|+|++..
T Consensus       174 --~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~  227 (269)
T d2hqsa1         174 --QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTM  227 (269)
T ss_dssp             --EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSE
T ss_pred             --cccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCE
Confidence              3378999999988766544 3  44445555443  23334556778899999643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.24  E-value=6.7e-05  Score=71.01  Aligned_cols=175  Identities=11%  Similarity=0.034  Sum_probs=99.2

Q ss_pred             CcEEEEEEcCCCCEEEEEe--CCeEEEEECCC-CcEEEE--ee---eCCCeEEEEEecCCcEEEEEe-CCCeEEEEECCC
Q 037288          257 CTVWTADFCTNPSQAVIGT--NLGAAMVDMET-GMASWV--CR---SKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVRK  327 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~-~~~~~~--~~---~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~  327 (513)
                      ..+.++.|+|+|++++++.  .+.|.+|+... +.....  ..   .......+.|+|+++++++.. .+++|.+||+..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            3578999999999888775  45688887553 332211  11   234589999999998775554 589999999976


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee-EeecCCCceEEEEEcCCCCEEEEEec-C-----CeEE
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH-TTFMPSSISCLQSLQLYDQYFLASSM-D-----GTVK  400 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~s~-d-----g~i~  400 (513)
                      ..... +....       .+..           ......... ..........-+.++|+|++|+++.. +     +.|.
T Consensus       225 ~~~~~-~~~~~-------~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~  285 (365)
T d1jofa_         225 ATHMP-VYTHH-------SFPL-----------IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA  285 (365)
T ss_dssp             TTCCE-EEEEE-------EEES-----------SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred             CCceE-EEEee-------eecc-----------ccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEE
Confidence            65322 10000       0000           000000000 00000011222478999999887753 2     2377


Q ss_pred             EEecCCCCccceEEe------cCCCCceeEEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCe
Q 037288          401 LYDHRLTTRGAVQSY------EGHVNSHTRIQLGVDQ-SERFVMSGG-EDCKLRIWSIRSGE  454 (513)
Q Consensus       401 lwd~~~~~~~~~~~~------~~h~~~v~~~~~~~s~-~g~~l~sg~-~Dg~v~vwd~~~~~  454 (513)
                      .|++.  ..+.+...      .........  ++++| +|++|+++. .++.|.+|++....
T Consensus       286 ~~~~~--~~g~~~~~~~~~~~~~~G~~p~~--i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         286 GFKLR--DCGSIEKQLFLSPTPTSGGHSNA--VSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEC--TTSCEEEEEEEEECSSCCTTCCC--EEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEEec--CCCceeeEeEeeEEEcCCCCccE--EEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            77775  33322211      111112223  78888 799887765 57899999876554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.09  E-value=0.0001  Score=69.65  Aligned_cols=203  Identities=4%  Similarity=-0.086  Sum_probs=110.1

Q ss_pred             ccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCC-cEEEEee--eCCCeEEEEEecCCcEEE--EEe-CCCeEEEEECCCC
Q 037288          255 FKCTVWTADFCTNPSQAVIGTNLGAAMVDMETG-MASWVCR--SKSDILAQQVIHSGNVVL--CGF-RNGAIVTVDVRKR  328 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~-~~~~~~~--~~~~V~~l~~~~~~~~l~--sg~-~dg~i~iwd~~~~  328 (513)
                      ....+.-++|+++++.|.++..+.+..|.+... .......  .......+.++++++.++  ++. ..+.|..+.+...
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            344556799999999998887777777766532 2222222  233466778888887433  332 2466766655432


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLT  407 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~  407 (513)
                      .....+..+. ....+...                  .+. .......-...+.++|+|+++++++. ...|.+|+..  
T Consensus       118 ~~~~~~~~~~-~~~~~~~~------------------~~~-~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~--  175 (365)
T d1jofa_         118 AGYGNVFSVS-ETGKLEKN------------------VQN-YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL--  175 (365)
T ss_dssp             CCEEEEEEEC-TTCCEEEE------------------EEE-EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC--
T ss_pred             CCcceeEeee-ecceecCc------------------ccC-cccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEcc--
Confidence            2110000000 00001000                  000 01111222234589999998888765 4578888865  


Q ss_pred             Ccc---ceEEecC--CCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEE--EE---ecC--------------C
Q 037288          408 TRG---AVQSYEG--HVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELV--FE---DKF--------------S  462 (513)
Q Consensus       408 ~~~---~~~~~~~--h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~--~~---~~~--------------~  462 (513)
                      ..+   .......  .....  ..+.|+|+++++++.. .+++|.+|++..++..  ..   ...              .
T Consensus       176 ~~g~~~~~~~~~~~~~g~gP--r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (365)
T d1jofa_         176 ASGEVELVGSVDAPDPGDHP--RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG  253 (365)
T ss_dssp             TTSCEEEEEEEECSSTTCCE--EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred             CCCceeeccceeecCCCCce--EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccc
Confidence            332   2222222  12222  3489999999886655 5889999998765422  21   110              0


Q ss_pred             CCCeEEEEEcCCCceEEee
Q 037288          463 NSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       463 ~~~v~~v~~~p~~~~~~t~  481 (513)
                      ......+.++|++.++..+
T Consensus       254 ~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         254 LYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEE
T ss_pred             cCCccceEECCCCCEEEEE
Confidence            1125678999996554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.06  E-value=0.00023  Score=63.64  Aligned_cols=183  Identities=9%  Similarity=-0.025  Sum_probs=111.0

Q ss_pred             cEEEEEEcCCCCEEEEE-eC-CeEEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288          258 TVWTADFCTNPSQAVIG-TN-LGAAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS  334 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s~-~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  334 (513)
                      .-..+++.++|.+.++. +. +.+..++......... .........++++++++++++...++.+++++........  
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~--   92 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL--   92 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC--
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee--
Confidence            44789999999976654 33 4466665544332222 2223346788999999988777666666665544332211  


Q ss_pred             ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEE
Q 037288          335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~  414 (513)
                       ...+ ..                                 .... +++.++++++++-..+..+..++..   ......
T Consensus        93 -~~~~-~~---------------------------------~p~~-iavd~~g~i~v~d~~~~~~~~~~~~---~~~~~~  133 (260)
T d1rwia_          93 -PFDG-LN---------------------------------YPEG-LAVDTQGAVYVADRGNNRVVKLAAG---SKTQTV  133 (260)
T ss_dssp             -CCCS-CC---------------------------------SEEE-EEECTTCCEEEEEGGGTEEEEECTT---CSSCEE
T ss_pred             -eeee-ee---------------------------------eccc-ccccccceeEeeccccccccccccc---cceeee
Confidence             1111 01                                 1122 3566788887776667777777764   222222


Q ss_pred             e--cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288          415 Y--EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK  484 (513)
Q Consensus       415 ~--~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~  484 (513)
                      +  .+.. ....  ++++++|+++++...++.|..++...................+++.+++.++++....
T Consensus       134 ~~~~~~~-~p~~--i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         134 LPFTGLN-DPDG--VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             CCCCSCC-SCCE--EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             eeecccC-Ccce--eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCC
Confidence            2  2222 2234  7889999988888888999999987655444333344557899999998788777654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.97  E-value=0.0009  Score=61.00  Aligned_cols=188  Identities=11%  Similarity=0.021  Sum_probs=109.6

Q ss_pred             eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCC--CcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288          249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMET--GMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTV  323 (513)
Q Consensus       249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~--~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iw  323 (513)
                      ...+......+.+++|.++|+++++.. ++.+.+|+...  +.......  .......+.+.++++++++-+.++.+..+
T Consensus        60 ~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~  139 (302)
T d2p4oa1          60 QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLI  139 (302)
T ss_dssp             EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceee
Confidence            444566678899999999999888774 45576666543  33333333  33458899999999999988889999999


Q ss_pred             ECCCCccccc-------cccccccCcCeEEEeeCC-eEEEeE--------eecccCc-ccceeEeecCCCceEEEEEcCC
Q 037288          324 DVRKRQRGCS-------SRAGRRHRIPYSRLQRND-RVTNEQ--------WFELKAN-IWPSHTTFMPSSISCLQSLQLY  386 (513)
Q Consensus       324 d~~~~~~~~~-------~~~~~~h~~~v~~v~~~~-~~~s~~--------w~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  386 (513)
                      |.........       .............+.+.. .++...        ++..... ............... +.+.++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdg-ia~d~d  218 (302)
T d2p4oa1         140 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDD-FAFDVE  218 (302)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSS-EEEBTT
T ss_pred             eccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcc-eEECCC
Confidence            9876642110       001111222344455544 222221        2222211 111112222222233 478889


Q ss_pred             CCEEEEEecCCeEEEEecCCCCccc--eEEecCCCCceeEEEEEE---cCCCCEEEEEeCC
Q 037288          387 DQYFLASSMDGTVKLYDHRLTTRGA--VQSYEGHVNSHTRIQLGV---DQSERFVMSGGED  442 (513)
Q Consensus       387 ~~~l~s~s~dg~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~---s~~g~~l~sg~~D  442 (513)
                      |+++++...++.|..++..   .+.  +..........+.  ++|   ++|++.|+.++..
T Consensus       219 G~l~va~~~~~~V~~i~p~---G~~~~~~~~~~~~~~pt~--vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         219 GNLYGATHIYNSVVRIAPD---RSTTIIAQAEQGVIGSTA--VAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCEEEECBTTCCEEEECTT---CCEEEEECGGGTCTTEEE--EEECCSTTTTTEEEEEECT
T ss_pred             CCEEEEEcCCCcEEEECCC---CCEEEEEecCCCCCCceE--EEEcCCCCCCCEEEEECCC
Confidence            9988888889999999863   332  2222223333444  788   6688888766543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.0001  Score=72.04  Aligned_cols=140  Identities=7%  Similarity=0.024  Sum_probs=88.7

Q ss_pred             EEcCCCCEEEEEeCCeEEEEECCCCcEEEEeee----CCCeEEEEEecCCcEEEEEe---------CCCeEEEEECCCCc
Q 037288          263 DFCTNPSQAVIGTNLGAAMVDMETGMASWVCRS----KSDILAQQVIHSGNVVLCGF---------RNGAIVTVDVRKRQ  329 (513)
Q Consensus       263 ~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~----~~~V~~l~~~~~~~~l~sg~---------~dg~i~iwd~~~~~  329 (513)
                      .|.+++.++....++.+.+||+.+++...++..    .-.+....|+||++.|+.+.         ..+.+.++|+.++.
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            477788777666677799999998876555542    23577888999998877663         35788999998776


Q ss_pred             cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288          330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR  409 (513)
Q Consensus       330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~  409 (513)
                      ... +.........+..                                  ..|+|+|+.+|-.. ++.|.+.+..  ..
T Consensus       103 ~~~-l~~~~~~~~~l~~----------------------------------~~wSPDG~~iafv~-~~nl~~~~~~--~~  144 (465)
T d1xfda1         103 PQS-LDPPEVSNAKLQY----------------------------------AGWGPKGQQLIFIF-ENNIYYCAHV--GK  144 (465)
T ss_dssp             CEE-CCCTTCCSCCCSB----------------------------------CCBCSSTTCEEEEE-TTEEEEESSS--SS
T ss_pred             eee-ccCccCCccccce----------------------------------eeeccCCceEEEEe-cceEEEEecC--CC
Confidence            433 2111111111111                                  36789999988766 6688888875  22


Q ss_pred             cceEEe-cCCCCcee---------------EEEEEEcCCCCEEEEEe
Q 037288          410 GAVQSY-EGHVNSHT---------------RIQLGVDQSERFVMSGG  440 (513)
Q Consensus       410 ~~~~~~-~~h~~~v~---------------~~~~~~s~~g~~l~sg~  440 (513)
                      ..++.. .+..+.+.               ...+-|||||++||...
T Consensus       145 ~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            233222 22221110               12367999999998865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.79  E-value=0.0014  Score=58.82  Aligned_cols=156  Identities=8%  Similarity=0.026  Sum_probs=102.9

Q ss_pred             cCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288          256 KCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      ......+++.++|.++++... ..+.+++.. ++.+..+.   +......+++.++++++++....+.|++||...... 
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~-  190 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL-  190 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE-
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCCcee-
Confidence            356778999999997776644 457778765 45555544   334578899999999999999999999999764321 


Q ss_pred             cccccc--cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCC
Q 037288          332 CSSRAG--RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTT  408 (513)
Q Consensus       332 ~~~~~~--~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~  408 (513)
                      .   .+  .+.....                                 .. +++.++|+.+++-.. ++.|.+|+.   +
T Consensus       191 ~---~~g~~g~~~~P---------------------------------~g-iavD~~G~i~Vad~~~~~~v~~f~~---~  230 (279)
T d1q7fa_         191 R---QIGGEGITNYP---------------------------------IG-VGINSNGEILIADNHNNFNLTIFTQ---D  230 (279)
T ss_dssp             E---EESCTTTSCSE---------------------------------EE-EEECTTCCEEEEECSSSCEEEEECT---T
T ss_pred             e---eecccccccCC---------------------------------cc-cccccCCeEEEEECCCCcEEEEECC---C
Confidence            1   11  1111111                                 12 367789987776544 456999985   3


Q ss_pred             ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288          409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE  454 (513)
Q Consensus       409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~  454 (513)
                      ...+.++...........++++++|.+++ +..+..|++|......
T Consensus       231 G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         231 GQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             CCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            44566664333222334588899997554 5678999999987653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.73  E-value=0.001  Score=59.20  Aligned_cols=68  Identities=7%  Similarity=0.028  Sum_probs=53.3

Q ss_pred             EEcCC--CCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CC-----CeEEEEECCCCcc
Q 037288          263 DFCTN--PSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RN-----GAIVTVDVRKRQR  330 (513)
Q Consensus       263 ~~s~~--g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~d-----g~i~iwd~~~~~~  330 (513)
                      ..+|+  |+.+|..+++.|.+.|+.+++...+..+...+...+|+|||+.|+-.. .+     ..|.+++...++.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            35688  999998888889888999999887777778899999999998776543 22     2477778776654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.033  Score=53.55  Aligned_cols=60  Identities=12%  Similarity=-0.034  Sum_probs=44.4

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee--eCCCe-----------------EEEEEecCCcEEEEEeC
Q 037288          257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR--SKSDI-----------------LAQQVIHSGNVVLCGFR  316 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V-----------------~~l~~~~~~~~l~sg~~  316 (513)
                      ..+.-..|||||+.+|...++.+.+.+..++..+.+..  ....|                 .++.|+|||+.||....
T Consensus       114 ~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            34566889999999999999999999888776555443  11112                 47789999998887643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.33  E-value=0.013  Score=53.37  Aligned_cols=158  Identities=6%  Similarity=-0.031  Sum_probs=94.9

Q ss_pred             cEEEEEEcCCCCEEEEEeC----------------CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-----EEEEEeC
Q 037288          258 TVWTADFCTNPSQAVIGTN----------------LGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-----VVLCGFR  316 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~s~----------------~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-----~l~sg~~  316 (513)
                      ..+.+++.++|.+.++...                +.|..++.+ ++.......-..-..++|++++.     ++++-+.
T Consensus       118 ~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeec
Confidence            3578899999998876421                123333432 44443333333456889998764     4555567


Q ss_pred             CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEec
Q 037288          317 NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSM  395 (513)
Q Consensus       317 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~  395 (513)
                      .+.|..||+....... -....                              ..+.. ....-.-+++..+|+++++...
T Consensus       197 ~~~i~~~d~~~~g~~~-~~~~~------------------------------~~~~~~~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIE-NKKVW------------------------------GHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             TTEEEEEEEEETTEEE-EEEEE------------------------------EECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             ccceEEeeccCccccc-eeeEE------------------------------EEccccccccceeeEEecCCcEEEEEcC
Confidence            8899999876443211 00000                              00000 0001112467889998888888


Q ss_pred             CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 037288          396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV-MSGGEDCKLRIWSIR  451 (513)
Q Consensus       396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l-~sg~~Dg~v~vwd~~  451 (513)
                      .+.|.+||..  ....+..+.......+.  ++|.|+++.| ++.+.+|.|...++.
T Consensus       246 ~g~I~~~dp~--~g~~~~~i~~p~~~~t~--~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         246 SSHIEVFGPD--GGQPKMRIRCPFEKPSN--LHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTEEEEECTT--CBSCSEEEECSSSCEEE--EEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCEEEEEeCC--CCEEEEEEECCCCCEEE--EEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8999999975  33355556655455555  8899998744 666677888887764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.66  E-value=0.21  Score=44.85  Aligned_cols=150  Identities=8%  Similarity=0.001  Sum_probs=90.9

Q ss_pred             CcEEEEEEcCCCCEEEEEeC-------CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEE-EEEeCCCeEEEEECCCC
Q 037288          257 CTVWTADFCTNPSQAVIGTN-------LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVV-LCGFRNGAIVTVDVRKR  328 (513)
Q Consensus       257 ~~V~~~~~s~~g~~l~s~s~-------~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l-~sg~~dg~i~iwd~~~~  328 (513)
                      ...+.+++.++|++.++...       +.+..++...+........-.....++|+|+++.| ++-+..+.|..||+...
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence            35788999999998776532       12555555544444434433456789999999855 44466889999998754


Q ss_pred             ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288          329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT  407 (513)
Q Consensus       329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~  407 (513)
                      ....  .....                            ...... ....-.-+++..+|++.++....+.|.+||.   
T Consensus       210 g~~~--~~~~~----------------------------~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p---  256 (319)
T d2dg1a1         210 GVTI--QPFGA----------------------------TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK---  256 (319)
T ss_dssp             SSSE--EEEEE----------------------------EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT---
T ss_pred             Ccee--ccccc----------------------------eeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC---
Confidence            3211  00000                            000000 0011122477889998888888999999995   


Q ss_pred             CccceEEec------CCCCceeEEEEEEcCCCCEEEEEeC
Q 037288          408 TRGAVQSYE------GHVNSHTRIQLGVDQSERFVMSGGE  441 (513)
Q Consensus       408 ~~~~~~~~~------~h~~~v~~~~~~~s~~g~~l~sg~~  441 (513)
                      +...+..+.      ++...+++  ++|.++...++....
T Consensus       257 ~G~~l~~i~~P~~~~~~~~~~~~--~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         257 RGYPIGQILIPGRDEGHMLRSTH--PQFIPGTNQLIICSN  294 (319)
T ss_dssp             TSCEEEEEECTTGGGTCSCBCCE--EEECTTSCEEEEEEE
T ss_pred             CCcEEEEEeCCCcCCCcCceeee--EEEeCCCCEEEEEcC
Confidence            444565554      23334455  788888776665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.87  E-value=0.21  Score=46.33  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=37.1

Q ss_pred             CCCCEEEEEe--CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCC--cEEEEEeCC
Q 037288          266 TNPSQAVIGT--NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSG--NVVLCGFRN  317 (513)
Q Consensus       266 ~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~--~~l~sg~~d  317 (513)
                      +||+++.+..  +..|-+.|+.+.++..+..  ....+..+...+++  .++++++.+
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~  154 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGED  154 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCcc
Confidence            3889888774  4569999999999866554  44457777766554  577777664

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.71  E-value=0.045  Score=47.89  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=62.0

Q ss_pred             EcCC--CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC-C-----CcEEEEeCCCCe
Q 037288          383 LQLY--DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-D-----CKLRIWSIRSGE  454 (513)
Q Consensus       383 ~~~~--~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-D-----g~v~vwd~~~~~  454 (513)
                      ++|+  |+.++-.+ +|.|.+.|+.   .+....+..+......  ..|||||++|+.... +     ..|.+++..+++
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~---~g~~~~Lt~~~~~~~~--p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLK---SGSTRKIVSNLGVINN--ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETT---TCCEEEEECSSSEEEE--EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECC---CCCEEEEecCCCcccC--EEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            4677  88887665 5678888985   4445566666665544  789999999886532 2     248888888887


Q ss_pred             EEEEecCC------CCCeEEEEEcCCCceEEee
Q 037288          455 LVFEDKFS------NSVPSAVCWRTQRSMGPQI  481 (513)
Q Consensus       455 ~~~~~~~~------~~~v~~v~~~p~~~~~~t~  481 (513)
                      ........      ........|+|++..++..
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            65532211      1235678999997655543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.54  E-value=0.69  Score=40.46  Aligned_cols=208  Identities=7%  Similarity=0.079  Sum_probs=118.8

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccccc
Q 037288          261 TADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH  340 (513)
Q Consensus       261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h  340 (513)
                      +.-.+|..+.||.-+..++.++|+++.+.+..+....+|.-=.|-.+. .|+--+ +..|+-|++.... .+ .+.+..|
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s-~P-~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-QP-VKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSC-CC-EEEEECC
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCC-Cc-hhhhhhc
Confidence            344578889998877778999999999999888888888766776444 444443 5689999996433 33 4455554


Q ss_pred             C----cCeEEEeeCC----eEEEeEeecccCcccceeEee---------cCCCceEEEEEcCCC-----CEEEEEec---
Q 037288          341 R----IPYSRLQRND----RVTNEQWFELKANIWPSHTTF---------MPSSISCLQSLQLYD-----QYFLASSM---  395 (513)
Q Consensus       341 ~----~~v~~v~~~~----~~~s~~w~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-----~~l~s~s~---  395 (513)
                      .    ..|..-..++    .++.|- ....+.+.....++         ..+...+-..+.-+|     +.|+.+..   
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI-~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGI-SAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEE-EEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeE-ecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            2    2333333333    222221 11111111111111         122223333332232     24443332   


Q ss_pred             CCeEEEEecCCCCcc--c--eEEec--C-C--CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288          396 DGTVKLYDHRLTTRG--A--VQSYE--G-H--VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP  466 (513)
Q Consensus       396 dg~i~lwd~~~~~~~--~--~~~~~--~-h--~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v  466 (513)
                      .+.+++.++.....+  +  .+...  - .  .+. --+.+.+++.-..++.-..-|.|++||+.++.++..-+-...+|
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~D-FPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i  300 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND-FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI  300 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTC-CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCC-cEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence            367888888642221  1  11111  0 1  111 12446777877889999999999999999999999877666666


Q ss_pred             EEEEEcCC
Q 037288          467 SAVCWRTQ  474 (513)
Q Consensus       467 ~~v~~~p~  474 (513)
                      -..+-...
T Consensus       301 F~~a~~~~  308 (327)
T d1utca2         301 FVTAPHEA  308 (327)
T ss_dssp             EEEEEETT
T ss_pred             EEeccCCC
Confidence            54444433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.14  E-value=0.96  Score=39.76  Aligned_cols=179  Identities=6%  Similarity=-0.027  Sum_probs=101.3

Q ss_pred             EEEEcCC-CCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc
Q 037288          261 TADFCTN-PSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR  338 (513)
Q Consensus       261 ~~~~s~~-g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  338 (513)
                      +..|++. +.++.+- ..+.|.-||..+++.. .+.....+.++++.++|.++++. .+ -+..+|..+++... +....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~-l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL-HAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE-EECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeE-Eeeee
Confidence            4557764 4444444 3566989999988653 45566778999999999877654 44 58889998876432 11111


Q ss_pred             ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC----CeEEEEecCCCCccceEE
Q 037288          339 RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD----GTVKLYDHRLTTRGAVQS  414 (513)
Q Consensus       339 ~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d----g~i~lwd~~~~~~~~~~~  414 (513)
                      ......                               .... ..+.++|++.++...+    +.-.+|.+.  .......
T Consensus        98 ~~~~~~-------------------------------~~nd-~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~  143 (295)
T d2ghsa1          98 SDLPGN-------------------------------RSND-GRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL  143 (295)
T ss_dssp             TTCTTE-------------------------------EEEE-EEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred             cCCCcc-------------------------------ccee-eEECCCCCEEEEeccccccccceeEeeec--CCcEEEE
Confidence            111000                               0111 3566788766654322    234556553  2222222


Q ss_pred             ecCCCCceeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCC------Ce--EEEEecCCCCCeEEEEEcCCCceEEe
Q 037288          415 YEGHVNSHTRIQLGVDQSERFVM-SGGEDCKLRIWSIRS------GE--LVFEDKFSNSVPSAVCWRTQRSMGPQ  480 (513)
Q Consensus       415 ~~~h~~~v~~~~~~~s~~g~~l~-sg~~Dg~v~vwd~~~------~~--~~~~~~~~~~~v~~v~~~p~~~~~~t  480 (513)
                      +.... .-..  ++|+++++.++ +-+..+.|+.+++..      ++  ....+....+....++...++.+.++
T Consensus       144 ~~~~~-~~Ng--~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         144 FADIS-IPNS--ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             EEEES-SEEE--EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             eeccC-Ccce--eeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee
Confidence            22222 1223  78899998664 555678898888642      11  22223333455778888888655554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.30  E-value=0.29  Score=44.85  Aligned_cols=162  Identities=12%  Similarity=-0.047  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCEEEEEeC------C------eEEEEECCCCcEE--EEe--eeCCCeEEEEEecCCcEEEEEeCC-CeEEE
Q 037288          260 WTADFCTNPSQAVIGTN------L------GAAMVDMETGMAS--WVC--RSKSDILAQQVIHSGNVVLCGFRN-GAIVT  322 (513)
Q Consensus       260 ~~~~~s~~g~~l~s~s~------~------~i~vwd~~~~~~~--~~~--~~~~~V~~l~~~~~~~~l~sg~~d-g~i~i  322 (513)
                      .......+|++++.|+-      +      .+.+||..+++-.  ...  .+..-..+.++.++|.+++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            33444568888887651      1      2678999987521  112  233334566788999999998765 58999


Q ss_pred             EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC------
Q 037288          323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD------  396 (513)
Q Consensus       323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d------  396 (513)
                      ||..+..... ...+...+.                                  .. ..+..+++++++.|+.+      
T Consensus       103 yd~~~~~w~~-~~~~~~~r~----------------------------------~~-~~~~~~dG~v~v~GG~~~~~~~~  146 (387)
T d1k3ia3         103 YDSSSDSWIP-GPDMQVARG----------------------------------YQ-SSATMSDGRVFTIGGSWSGGVFE  146 (387)
T ss_dssp             EEGGGTEEEE-CCCCSSCCS----------------------------------SC-EEEECTTSCEEEECCCCCSSSCC
T ss_pred             ecCccCcccc-ccccccccc----------------------------------cc-ceeeecCCceeeecccccccccc
Confidence            9988765432 111111110                                  11 12445688888888753      


Q ss_pred             CeEEEEecCCCCccceEEe-------cCCCCce---eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288          397 GTVKLYDHRLTTRGAVQSY-------EGHVNSH---TRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF  457 (513)
Q Consensus       397 g~i~lwd~~~~~~~~~~~~-------~~h~~~v---~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~  457 (513)
                      ..+.+||........+...       ..+...+   ....+..-++|+.++.++.++.+.+++..+.....
T Consensus       147 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~  217 (387)
T d1k3ia3         147 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  217 (387)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             ceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEee
Confidence            3588999863221111000       0010000   00112334578888888888888888887766443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.02  E-value=1.3  Score=38.70  Aligned_cols=138  Identities=8%  Similarity=0.096  Sum_probs=86.6

Q ss_pred             eEEEEECCCCcEEE--EeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEE
Q 037288          278 GAAMVDMETGMASW--VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTN  355 (513)
Q Consensus       278 ~i~vwd~~~~~~~~--~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s  355 (513)
                      ++.|.|+..+....  -+..+    +.--+|..++|+.=+ ..++.++|+++.+...                       
T Consensus        46 ~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK~klk-----------------------   97 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK-----------------------   97 (327)
T ss_dssp             EEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEE-----------------------
T ss_pred             eEEEEECCCCCcceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhc-----------------------
Confidence            48889998665222  12222    223468888777765 5689999999887533                       


Q ss_pred             eEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC--ceeEEEEEEcCCC
Q 037288          356 EQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN--SHTRIQLGVDQSE  433 (513)
Q Consensus       356 ~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~--~v~~~~~~~s~~g  433 (513)
                                    ...+++.+.--.|++  .+.|+..+. ..|+-|++.. ...+.+.|..|..  ....+....++++
T Consensus        98 --------------s~~~~e~VvfWkWis--~~~L~lVT~-taVYHW~~~g-~s~P~k~fdR~~~L~~~QIInY~~d~~~  159 (327)
T d1utca2          98 --------------AHTMTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQ  159 (327)
T ss_dssp             --------------EEECSSCCCEEEESS--SSEEEEECS-SEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTS
T ss_pred             --------------eEEcCCCcEEEEecC--CCEEEEEcC-CceEEEcccC-CCCchhhhhhcccccCceEEEEEECCCC
Confidence                          333344444446665  445665554 4899999952 2348888877754  2334556778999


Q ss_pred             CEEEEEeC-------CCcEEEEeCCCCeEEEEecCC
Q 037288          434 RFVMSGGE-------DCKLRIWSIRSGELVFEDKFS  462 (513)
Q Consensus       434 ~~l~sg~~-------Dg~v~vwd~~~~~~~~~~~~~  462 (513)
                      +|++..|-       .|.+.+|+.+.+. -+.+.+|
T Consensus       160 kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGh  194 (327)
T d1utca2         160 KWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH  194 (327)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCS
T ss_pred             CEEEEEeEecCCCceeEEEEEEEeccCc-Cccccce
Confidence            99875432       4678999986553 2334444

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.00  E-value=2.3  Score=39.13  Aligned_cols=155  Identities=12%  Similarity=0.037  Sum_probs=85.5

Q ss_pred             EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCe---------------EEEEECCCCcccc---cccccccc
Q 037288          279 AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGA---------------IVTVDVRKRQRGC---SSRAGRRH  340 (513)
Q Consensus       279 i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~---------------i~iwd~~~~~~~~---~~~~~~~h  340 (513)
                      +.++|..+++..+...-......++++++|+++++.+.+..               +.+++........   ....+   
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei---  251 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL---  251 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE---
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe---
Confidence            46789999988887777777888999999999988876421               2222211000000   00000   


Q ss_pred             CcCeEEEeeCCeEEEeEeecccC-cccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCc--------c
Q 037288          341 RIPYSRLQRNDRVTNEQWFELKA-NIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTR--------G  410 (513)
Q Consensus       341 ~~~v~~v~~~~~~~s~~w~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~--------~  410 (513)
                       ..+.-           -+.... .......+..+..... +..+|||+++++++. +.++.++|+++...        .
T Consensus       252 -ngV~V-----------VD~~~~~~~~v~~yIPVpKsPHG-V~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~  318 (459)
T d1fwxa2         252 -NGVKV-----------VDGRKEASSLFTRYIPIANNPHG-CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  318 (459)
T ss_dssp             -TTEEE-----------EECSGG--CSSEEEEEEESSCCC-EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GG
T ss_pred             -CCcee-----------ecccccCCcceeEEEecCCCCCc-eEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcc
Confidence             00000           011110 0111222333333333 368899999987765 89999999963210        0


Q ss_pred             -ce-EEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288          411 -AV-QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS  452 (513)
Q Consensus       411 -~~-~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~  452 (513)
                       .+ ...+.--+   -+..+|+..|.-..|---|..|.-|++..
T Consensus       319 ~~~~~e~elglg---PLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         319 SAVVAEPELGLG---PLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             GGEEECCBCCSC---EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccEEeecccCcC---ccccccCCCceEEEEeeccceEEEEecch
Confidence             11 11111112   24578888886555666799999999853

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=1.9  Score=37.02  Aligned_cols=177  Identities=8%  Similarity=0.011  Sum_probs=96.9

Q ss_pred             EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288          270 QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ  348 (513)
Q Consensus       270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  348 (513)
                      +|..+....|+-.++.+.....+......+.+++|++..+.|+... .++.|.-.++...........+...        
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~--------   74 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------   74 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--------
T ss_pred             EEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC--------
Confidence            4555555568888998777666666666788999999887777664 4566776666543211100000000        


Q ss_pred             eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEE
Q 037288          349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL  427 (513)
Q Consensus       349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~  427 (513)
                                              ....+.. +++.+.+ +...+-...+.|.+.++.  .......+.........  +
T Consensus        75 ------------------------~~~~p~g-lAvD~~~~~lY~~d~~~~~I~v~~~~--g~~~~~~~~~~~~~P~~--l  125 (266)
T d1ijqa1          75 ------------------------DIQAPDG-LAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGSKPRA--I  125 (266)
T ss_dssp             ------------------------SCSCCCE-EEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTCCEEE--E
T ss_pred             ------------------------CCCCcce-EEEeeccceEEEEecCCCEEEeEecC--CceEEEEEcCCCCCcce--E
Confidence                                    0011122 2444334 444444566789999985  22222323333333333  7


Q ss_pred             EEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCC
Q 037288          428 GVDQSERFVMSGG--EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEG  483 (513)
Q Consensus       428 ~~s~~g~~l~sg~--~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~  483 (513)
                      +++|...+|+...  ..+.|.-.++............-..++++++.+. ..++.+...
T Consensus       126 ~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         126 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCC
Confidence            8888776666543  3456777777554443333333455789999876 556665444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.19  E-value=2.2  Score=36.51  Aligned_cols=189  Identities=7%  Similarity=-0.106  Sum_probs=104.4

Q ss_pred             eccccCcEEEEEEcCCCCEEEEE--eCCeEEEEECCCCcEEEEeee-CCCeEEEEEecCCcEEE-EEeCCCeEEEEECCC
Q 037288          252 VASFKCTVWTADFCTNPSQAVIG--TNLGAAMVDMETGMASWVCRS-KSDILAQQVIHSGNVVL-CGFRNGAIVTVDVRK  327 (513)
Q Consensus       252 ~~~h~~~V~~~~~s~~g~~l~s~--s~~~i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~~~l~-sg~~dg~i~iwd~~~  327 (513)
                      +..+...+.+++|....+.+.-+  .++.|...++..+....+... -..+.++++..-+..|+ +-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            34445568889999877766544  345588888876655544442 35688999987665555 445578999999876


Q ss_pred             CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCe--EEEEec
Q 037288          328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGT--VKLYDH  404 (513)
Q Consensus       328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~--i~lwd~  404 (513)
                      ..... +  +.........                                  .++.|...++.... ..+.  |.--++
T Consensus       111 ~~~~~-l--~~~~l~~p~~----------------------------------l~vdp~~g~ly~t~~~~~~~~I~r~~~  153 (263)
T d1npea_         111 TQRRV-L--FDTGLVNPRG----------------------------------IVTDPVRGNLYWTDWNRDNPKIETSHM  153 (263)
T ss_dssp             CSCEE-E--ECSSCSSEEE----------------------------------EEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             ceEEE-E--ecccccCCcE----------------------------------EEEecccCcEEEeecCCCCcEEEEecC
Confidence            54311 0  1111112222                                  23444444444332 2223  433344


Q ss_pred             CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288          405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG  483 (513)
Q Consensus       405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~  483 (513)
                      .  ...........-....  .+++++.++.|+.+ ...+.|...++........+.... ...+++.. ++.++.|...
T Consensus       154 d--G~~~~~i~~~~~~~P~--glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~  227 (263)
T d1npea_         154 D--GTNRRILAQDNLGLPN--GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWK  227 (263)
T ss_dssp             T--SCCCEEEECTTCSCEE--EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETT
T ss_pred             C--CCCceeeeeecccccc--eEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECC
Confidence            3  2222222222222223  37888887777555 557889999987655444444333 35678877 4556666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.29  E-value=5.2  Score=38.49  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             CeEEEEECCCCcEEEEeeeC----------CCeEEEEEecCCc---EEEEEeCCCeEEEEECCCCccc
Q 037288          277 LGAAMVDMETGMASWVCRSK----------SDILAQQVIHSGN---VVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       277 ~~i~vwd~~~~~~~~~~~~~----------~~V~~l~~~~~~~---~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      +.+...|+++|+.++.+++.          ..........++.   .++.++.+|.++++|..+++.+
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            34778899999999887721          1222223334553   6788899999999999988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.05  E-value=0.96  Score=41.06  Aligned_cols=72  Identities=15%  Similarity=0.062  Sum_probs=45.9

Q ss_pred             EEcCCCCEEEEEecC-CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCe
Q 037288          382 SLQLYDQYFLASSMD-GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED------CKLRIWSIRSGE  454 (513)
Q Consensus       382 ~~~~~~~~l~s~s~d-g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D------g~v~vwd~~~~~  454 (513)
                      .+.+++.+++.|+.+ ..+.+||...........+......   ...+..+||++++.|+.+      ..+.+||..+.+
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~---~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY---QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS---CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEecCCcEEEeecCCCcceeEecCccCcccccccccccccc---cceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            456789999888765 6899999862221122222211111   225667899999988763      368999998876


Q ss_pred             EE
Q 037288          455 LV  456 (513)
Q Consensus       455 ~~  456 (513)
                      -.
T Consensus       159 W~  160 (387)
T d1k3ia3         159 WT  160 (387)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.56  E-value=5.1  Score=36.86  Aligned_cols=213  Identities=7%  Similarity=-0.064  Sum_probs=104.1

Q ss_pred             cEEEEEEcCCCCEEEEE-eC-C----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC--------------
Q 037288          258 TVWTADFCTNPSQAVIG-TN-L----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN--------------  317 (513)
Q Consensus       258 ~V~~~~~s~~g~~l~s~-s~-~----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d--------------  317 (513)
                      .+..++++|+++++|.+ +. |    .+++.|+.+++.+...-.......+.|.+|+..|+-...|              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            44556789999999855 21 2    2899999999865422222223578899999866654332              


Q ss_pred             --CeEEEEECCCCccccccccccccC--cCeEEEeeCC----eEEEeE---------eecccCc--c--c----ceeEee
Q 037288          318 --GAIVTVDVRKRQRGCSSRAGRRHR--IPYSRLQRND----RVTNEQ---------WFELKAN--I--W----PSHTTF  372 (513)
Q Consensus       318 --g~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~~~----~~~s~~---------w~~~~~~--~--~----~~~~~~  372 (513)
                        ..|..+.+.+..... ...+....  ..+..+..+.    .++...         |......  .  .    ....+.
T Consensus       206 ~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence              368888887765432 22233322  2344454544    222221         2221111  0  0    001111


Q ss_pred             cCCCceEEEEEcCCCCEEEEEe---cCCeEEEEecCCCCccceEEec-CCCCceeEEEEEEcCCCCEEEEE-eCCC--cE
Q 037288          373 MPSSISCLQSLQLYDQYFLASS---MDGTVKLYDHRLTTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSG-GEDC--KL  445 (513)
Q Consensus       373 ~~~~v~~~~~~~~~~~~l~s~s---~dg~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg-~~Dg--~v  445 (513)
                      ........+. ..++.+++...   .++.|...++..........+- .+...+..  -.+...+.+|+.. -.|+  .|
T Consensus       285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~--~~~~~~~~~lvl~~~~~~~~~l  361 (430)
T d1qfma1         285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE--WVACVRSNFLVLCYLHDVKNTL  361 (430)
T ss_dssp             SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE--EEEEETTTEEEEEEEETTEEEE
T ss_pred             ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee--eEEEEECCEEEEEEEcCCEeEE
Confidence            1111112111 11233333332   2466766776532222223333 34443433  2333445566554 3554  58


Q ss_pred             EEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288          446 RIWSIRSGELVFEDKFSNSVPSAVCWRTQ  474 (513)
Q Consensus       446 ~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  474 (513)
                      +++++.+++.........+.+..+...++
T Consensus       362 ~v~~~~~~~~~~~~~~~~~sv~~~~~~~~  390 (430)
T d1qfma1         362 QLHDLATGALLKIFPLEVGSVVGYSGQKK  390 (430)
T ss_dssp             EEEETTTCCEEEEECCCSSEEEEEECCTT
T ss_pred             EEEECCCCcEEEecCCCCceEeeccCCCC
Confidence            88999888776554443444544444443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.56  E-value=2.3  Score=41.26  Aligned_cols=55  Identities=18%  Similarity=0.318  Sum_probs=38.2

Q ss_pred             eEEEEECCCCcEEEEeeeC----------CCeEEEEEecCC---cEEEEEeCCCeEEEEECCCCcccc
Q 037288          278 GAAMVDMETGMASWVCRSK----------SDILAQQVIHSG---NVVLCGFRNGAIVTVDVRKRQRGC  332 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~----------~~V~~l~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~~  332 (513)
                      .|...|+.+++..+.+++.          .+........++   ..++.++.+|.++++|..+++...
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~  351 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccc
Confidence            3777899999988877621          122233333444   468888999999999999887643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.46  E-value=3.7  Score=35.04  Aligned_cols=174  Identities=6%  Similarity=-0.026  Sum_probs=92.5

Q ss_pred             CCEEEEEeCCeEEEEECCCCc------EEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCcccccccccccc
Q 037288          268 PSQAVIGTNLGAAMVDMETGM------ASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRRH  340 (513)
Q Consensus       268 g~~l~s~s~~~i~vwd~~~~~------~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~h  340 (513)
                      |.+|..+..+.|+-.+++...      ..........+.+++|++..+.|+.. ..++.|+..++.......   .+...
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~   77 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQD   77 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTT
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEec
Confidence            345666666667666665432      11122233457889999877766665 456788888887654321   11111


Q ss_pred             CcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEE-EEEecCCeEEEEecCCCCccceEEecCCC
Q 037288          341 RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYF-LASSMDGTVKLYDHRLTTRGAVQSYEGHV  419 (513)
Q Consensus       341 ~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~~~~~~~~h~  419 (513)
                      ...+..                                  +++..-+..| .+-...+.|.+.++.  .......+....
T Consensus        78 ~~~p~~----------------------------------iAvD~~~~~lY~~d~~~~~I~~~~~d--g~~~~~l~~~~l  121 (263)
T d1npea_          78 LGSPEG----------------------------------IALDHLGRTIFWTDSQLDRIEVAKMD--GTQRRVLFDTGL  121 (263)
T ss_dssp             CCCEEE----------------------------------EEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSC
T ss_pred             cccccE----------------------------------EEEeccCCeEEEeccCCCEEEEEecC--CceEEEEecccc
Confidence            112222                                  2344334444 454557789999985  222222222222


Q ss_pred             CceeEEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeC
Q 037288          420 NSHTRIQLGVDQSERFVMSGGED-CK--LRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIE  482 (513)
Q Consensus       420 ~~v~~~~~~~s~~g~~l~sg~~D-g~--v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~  482 (513)
                      ....  .++++|...+|+-.... +.  |.--++............-...+++++.+. ..++.+..
T Consensus       122 ~~p~--~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         122 VNPR--GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             SSEE--EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             cCCc--EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence            3333  47888988777654332 23  444455444333333333455789999866 55555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.17  E-value=5.9  Score=38.00  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             eEEEEECCCCcEEEEeee-CCCe---------EEEEEecCC---cEEEEEeCCCeEEEEECCCCccc
Q 037288          278 GAAMVDMETGMASWVCRS-KSDI---------LAQQVIHSG---NVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~-~~~V---------~~l~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      .|...|+++++..+.++. ..++         .-+....++   ..++.++.+|.++++|..+++..
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence            477789999999887762 1111         122233345   47788899999999999988764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.32  E-value=10  Score=36.60  Aligned_cols=54  Identities=19%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             eEEEEECCCCcEEEEeeeC----------CCeEEEEE-ecCC---cEEEEEeCCCeEEEEECCCCccc
Q 037288          278 GAAMVDMETGMASWVCRSK----------SDILAQQV-IHSG---NVVLCGFRNGAIVTVDVRKRQRG  331 (513)
Q Consensus       278 ~i~vwd~~~~~~~~~~~~~----------~~V~~l~~-~~~~---~~l~sg~~dg~i~iwd~~~~~~~  331 (513)
                      .+...|+.+|+.++.+++.          ....-+.. ..+|   ..++.+..+|.+.++|..+++.+
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence            4778899999999877621          11222222 2344   47888999999999999998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.20  E-value=8.7  Score=36.93  Aligned_cols=45  Identities=13%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe-EEEEEcCCC
Q 037288          431 QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP-SAVCWRTQR  475 (513)
Q Consensus       431 ~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v-~~v~~~p~~  475 (513)
                      ..|.++++|+.||.++.+|..+|+.+-+++...... .-+.|..++
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            357788899999999999999999999876532211 114555554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.75  E-value=13  Score=34.16  Aligned_cols=52  Identities=10%  Similarity=-0.010  Sum_probs=39.5

Q ss_pred             cCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee---------eCCCeEEEEEecC
Q 037288          256 KCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR---------SKSDILAQQVIHS  307 (513)
Q Consensus       256 ~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~---------~~~~V~~l~~~~~  307 (513)
                      -..-++++|.|+|+++++- ..+.|++++..++.......         .+...+.|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3577899999999999887 46789999988876544332         2245789999985

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.93  E-value=16  Score=33.57  Aligned_cols=35  Identities=14%  Similarity=0.008  Sum_probs=27.9

Q ss_pred             CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcc
Q 037288          296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQR  330 (513)
Q Consensus       296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~  330 (513)
                      -..-++|+|.|||+++++--.+|.|++++..++..
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            34578999999999887764579999998777654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.89  E-value=18  Score=32.77  Aligned_cols=101  Identities=10%  Similarity=0.020  Sum_probs=58.6

Q ss_pred             EEEEEecCCcEEEEE-eCC----CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288          300 LAQQVIHSGNVVLCG-FRN----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP  374 (513)
Q Consensus       300 ~~l~~~~~~~~l~sg-~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~  374 (513)
                      ..++++||+++++.+ +.+    ..++++|+.+++...  ..       +....                          
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~--~~-------i~~~~--------------------------  172 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--DV-------LERVK--------------------------  172 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--EE-------EEEEC--------------------------
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecc--cc-------ccccc--------------------------
Confidence            445678999877644 223    478999999887432  00       00000                          


Q ss_pred             CCceEEEEEcCCCCEEEEEecC----------------CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEE
Q 037288          375 SSISCLQSLQLYDQYFLASSMD----------------GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMS  438 (513)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~s~d----------------g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~s  438 (513)
                        ... ..|.++++.|+....+                ..|..+.+..........+...........+..+.++++++.
T Consensus       173 --~~~-~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         173 --FSC-MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             --SCC-EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             --ccc-eEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence              011 3566788877655433                257778876433334455555444433444677899998764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.93  E-value=15  Score=30.99  Aligned_cols=199  Identities=11%  Similarity=-0.083  Sum_probs=101.7

Q ss_pred             ccCcEEEEEEcCCCCEEEEE--eCCeEEEEECCCCc----EEEEee-eCCCeEEEEEecCCcEEEEE-eCCCeEEEEECC
Q 037288          255 FKCTVWTADFCTNPSQAVIG--TNLGAAMVDMETGM----ASWVCR-SKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVR  326 (513)
Q Consensus       255 h~~~V~~~~~s~~g~~l~s~--s~~~i~vwd~~~~~----~~~~~~-~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~  326 (513)
                      ....+.+++|++..+.+.-.  ..+.|.-.++....    ...... .-..+..+++.+.+..|+.. ...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            34567789999877766544  33446656654321    112222 22447788888766544444 566889999998


Q ss_pred             CCccccccccccccCcCeEEEeeCC---eEEEeEeecc----cCcc--cceeEeecC--CCceEEEEEcCCCCEEEEE-e
Q 037288          327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQWFEL----KANI--WPSHTTFMP--SSISCLQSLQLYDQYFLAS-S  394 (513)
Q Consensus       327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~----~~~~--~~~~~~~~~--~~v~~~~~~~~~~~~l~s~-s  394 (513)
                      ......   .+.........++.+|   .++-..|...    ...+  .....+...  ..... ..+.+.++.|..+ .
T Consensus       108 g~~~~~---~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~g-l~iD~~~~~lYw~d~  183 (266)
T d1ijqa1         108 GVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG-ITLDLLSGRLYWVDS  183 (266)
T ss_dssp             SSSEEE---EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE-EEEETTTTEEEEEET
T ss_pred             CceEEE---EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeE-EEeeccccEEEEecC
Confidence            665322   2333445567777766   2222222110    0000  011111111  12233 3566666655555 4


Q ss_pred             cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecC
Q 037288          395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVFEDKF  461 (513)
Q Consensus       395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~~~~  461 (513)
                      ..+.|...|+.  ...................+++.  +.+|+.. ..++.|+..+..+++....+..
T Consensus       184 ~~~~I~~~~~d--G~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         184 KLHSISSIDVN--GGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             TTTEEEEEETT--SCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             CcCEEEEEECC--CCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence            56788888875  22222222222211112235555  4455544 4678888888888876655543