Citrus Sinensis ID: 037315

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---
Protein Sequence
MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccEEcccccccccccccccEEEccccccccccccccccccccccEEEcccccccEEccHHHHHccccccEEEcccccccEEccccccccccccEEEccccEEEEEccccHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccHHccccccEEEccccEEEccccccHHccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHccccccccEEEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccHHccccccHEEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccccccccHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
madnelrgslpwclanmtslrildvssnqltgsisssplfyLTSIEelslsnnhfhipisleplfnhsrlkifyadnnpinakitkshtlttpkfQLASlslsssygdgvtfpkflyyqhdledvhfsriqmngefpnwllenntkLRQLSLvndslagpfrlpihshrhlrlldvsnnnfqghipveigdILPRLISFNismnaldgsipssfgnmNLLQILDlsnnqltgeipehlamgCVNLEFLALSNnslkghmfsrnfNLINLRWLQLegnhfvgeipqslskcssleglylnnnslsgkiprwlgNLTWLIHIImpknhlegpipvefchlyslqildisdnnisgslpscfhplsitqvhlsknmlhgqlkggtffncsslvTLDLsynllngsipdwiDGLSQLSHLIlgnnnlegevpvqlcglnqlqlldlsnnnlhglippcfdntklhesynnssspdeQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSgldlscnklighippqvgnltrIQTLNlshnnltglipstfsnlKQIESLDLSYnklngkiphQLVELKELAVFSVAYNnlsgeipeWKAQFATFnensyegntflcglplpicrspttmseasienerddnlidtdsffITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Flexible Loop (DISEMBL)
madnelrgslPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Low Complexity Region (SEG)
MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVqlcglnqlqlldlsnnnlHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLidtdsffitfttsYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Disordered region (IsUnstruct)
********SLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKL*************FKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRS***************NLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWI**
Disordered Region (DISOPRED)
MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN*SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCG****************************DSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Disordered Region (DISEMBL)
MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Disordered Region (DISPRO)
**DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	693	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.900	0.498	0.312	1e-68
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.810	0.491	0.320	5e-59
Q9LJF3	1164	Receptor-like protein kin	no	no	0.906	0.539	0.308	1e-58
Q9FL28	1173	LRR receptor-like serine/	no	no	0.822	0.485	0.319	2e-58
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.826	0.458	0.319	2e-57
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.920	0.547	0.294	3e-57
Q9LHP4	1141	Receptor-like protein kin	no	no	0.851	0.517	0.322	5e-57
P93194	1109	Receptor-like protein kin	N/A	no	0.744	0.465	0.321	8e-56
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.864	0.502	0.301	3e-54
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.890	0.515	0.283	8e-53

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  261 bits (667), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 215/688 (31%), Positives = 337/688 (48%), Gaps = 64/688 (9%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIP 58
           + DNEL G +P  + N TSL +   + N+L GS+ +  L  L +++ L+L +N F   IP
Sbjct: 199 LQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSFSGEIP 257

Query: 59  ISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYY 118
             L  L +   L +     N +   I K     T    L +L LSS+   GV   +F + 
Sbjct: 258 SQLGDLVSIQYLNLI---GNQLQGLIPKR---LTELANLQTLDLSSNNLTGVIHEEF-WR 310

Query: 119 QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSN 178
            + LE +  ++ +++G  P  +  NNT L+QL L    L+G     I + + L+LLD+SN
Sbjct: 311 MNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSN 370

Query: 179 NNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
           N   G IP  +  ++  L +  ++ N+L+G++ SS  N+  LQ   L +N L G++P+ +
Sbjct: 371 NTLTGQIPDSLFQLV-ELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEI 429

Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298
                 LE + L  N   G M     N   L+ +   GN   GEIP S+ +   L  L+L
Sbjct: 430 GF-LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHL 488

Query: 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSC 358
             N L G IP  LGN   +  I +  N L G IP  F  L +L++  I +N++ G+LP  
Sbjct: 489 RENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDS 548

Query: 359 FHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
              L  +T+++ S N  +G +        SS ++ D++ N   G IP  +   + L  L 
Sbjct: 549 LINLKNLTRINFSSNKFNGSIS--PLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLR 606

Query: 418 LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP------------------------- 452
           LG N   G +P     +++L LLD+S N+L G+IP                         
Sbjct: 607 LGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPT 666

Query: 453 -----PCFDNTKLHESYNNSSSPDEQFKI-----LFSIKGHQ--GHVEKKIQEFFEFTTK 500
                P     KL  +    S P E F +     LF + G+   G + ++I         
Sbjct: 667 WLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLF-LDGNSLNGSIPQEIGNLQALNAL 725

Query: 501 NIAY-IFQGKV------LSLLSGLDLSCNKLIGHIPPQVGNLTRIQT-LNLSHNNLTGLI 552
           N+      G +      LS L  L LS N L G IP ++G L  +Q+ L+LS+NN TG I
Sbjct: 726 NLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRI 785

Query: 553 PSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNE 612
           PST S L ++ESLDLS+N+L G++P Q+ ++K L   +++YNNL G++   K QF+ +  
Sbjct: 786 PSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL---KKQFSRWQA 842

Query: 613 NSYEGNTFLCGLPLPICRSPTTMSEASI 640
           +++ GN  LCG PL  C    + ++ S+
Sbjct: 843 DAFVGNAGLCGSPLSHCNRAGSKNQRSL 870

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  229 bits (584), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 188/586 (32%), Positives = 283/586 (48%), Gaps = 24/586 (4%)

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYG--DGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
           N    K+     L++ K Q   LS ++  G   G+T P  L     +  + FS   ++G 
Sbjct: 162 NNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIP--LSSCVSMTYLDFSGNSISGY 219

Query: 136 FPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPR 195
             + L+ N T L+ L+L  ++  G         + L+ LD+S+N   G IP EIGD    
Sbjct: 220 ISDSLI-NCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRS 278

Query: 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255
           L +  +S N   G IP S  + + LQ LDLSNN ++G  P  +     +L+ L LSNN +
Sbjct: 279 LQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLI 338

Query: 256 KGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSK-CSSLEGLYLNNNSLSGKIPRWLGNL 314
            G   +      +LR      N F G IP  L    +SLE L L +N ++G+IP  +   
Sbjct: 339 SGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQC 398

Query: 315 TWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNM 373
           + L  I +  N+L G IP E  +L  L+      NNI+G +P     L  +  + L+ N 
Sbjct: 399 SELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQ 458

Query: 374 LHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCG 433
           L G++    FFNCS++  +  + N L G +P     LS+L+ L LGNNN  GE+P +L  
Sbjct: 459 LTGEIPP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGK 517

Query: 434 LNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQF---KILFSIKGHQGHVE-- 488
              L  LDL+ N+L G IPP        ++ +   S +       +  S KG  G VE  
Sbjct: 518 CTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFS 577

Query: 489 ----KKIQEFFEFTTKNIAYIFQGKVLSLLSG------LDLSCNKLIGHIPPQVGNLTRI 538
               +++ +     + +   ++ G +LSL +       LDLS N+L G IP ++G +  +
Sbjct: 578 GIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIAL 637

Query: 539 QTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG 598
           Q L LSHN L+G IP T   LK +   D S N+L G+IP     L  L    ++ N L+G
Sbjct: 638 QVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTG 697

Query: 599 EIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENER 644
            IP+ + Q +T     Y  N  LCG+PLP C++      A  E  +
Sbjct: 698 PIPQ-RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGK 742

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 214/694 (30%), Positives = 312/694 (44%), Gaps = 66/694 (9%)

Query: 23  LDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIPISLEPLFNHSRLKIFYADNNPI 80
           ++ S N+L G + SSP      I  + LSNN F   IP +    F +S LK      N +
Sbjct: 155 VNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPNS-LKHLDLSGNNV 213

Query: 81  NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWL 140
               ++          + SLS +S  GD   FP  L     LE ++ SR  + G+ P   
Sbjct: 214 TGDFSRLSFGLCENLTVFSLSQNSISGD--RFPVSLSNCKLLETLNLSRNSLIGKIPG-- 269

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
                         D   G F+       +LR L +++N + G IP E+  +   L   +
Sbjct: 270 --------------DDYWGNFQ-------NLRQLSLAHNLYSGEIPPELSLLCRTLEVLD 308

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMF 260
           +S N+L G +P SF +   LQ L+L NN+L+G+    +      +  L L  N++ G + 
Sbjct: 309 LSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVP 368

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQ---SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWL 317
               N  NLR L L  N F GE+P    SL   S LE L + NN LSG +P  LG    L
Sbjct: 369 ISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSL 428

Query: 318 IHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS--CFHPLSITQVHLSKNMLH 375
             I +  N L G IP E   L  L  L +  NN++G +P   C    ++  + L+ N+L 
Sbjct: 429 KTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLT 488

Query: 376 GQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLN 435
           G L   +   C++++ + LS NLL G IP  I  L +L+ L LGNN+L G +P +L    
Sbjct: 489 GSLPE-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCK 547

Query: 436 QLQLLDLSNNNLHGLIP-----------PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQ 484
            L  LDL++NNL G +P           P   + K      N    D         +G  
Sbjct: 548 NLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTD--------CRGAG 599

Query: 485 GHVE------KKIQEFFEFTTKNIAYIFQGKVLSLLSG------LDLSCNKLIGHIPPQV 532
           G VE      ++++ F    +     I+ G  + + S       LDLS N + G IP   
Sbjct: 600 GLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGY 659

Query: 533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592
           G +  +Q LNL HN LTG IP +F  LK I  LDLS+N L G +P  L  L  L+   V+
Sbjct: 660 GAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVS 719

Query: 593 YNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLIDTD 652
            NNL+G IP +  Q  TF    Y  N+ LCG+PLP C S +  + +    ++        
Sbjct: 720 NNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMS 778

Query: 653 SFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYF 686
           +  +      V++I  +     V    + R  Y 
Sbjct: 779 AGIVFSFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  228 bits (580), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 312/667 (46%), Gaps = 97/667 (14%)

Query: 2   ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISL 61
           A N L GS+P  +  + +L  LD+S NQLTG I       L +++ L L+ N     I  
Sbjct: 200 AGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPA 258

Query: 62  EPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVT--FPKFLYYQ 119
           E + N S L      +N +  KI           QL +L +   Y + +T   P  L+  
Sbjct: 259 E-IGNCSSLVQLELYDNQLTGKIPAE---LGNLVQLQALRI---YKNKLTSSIPSSLFRL 311

Query: 120 HDLEDVHFSRIQMNGEFPNWL--LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVS 177
             L  +  S   + G     +  LE+   L  L+L +++  G F   I + R+L +L V 
Sbjct: 312 TQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSITNLRNLTVLTVG 368

Query: 178 NNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE- 236
            NN  G +P ++G +L  L + +   N L G IPSS  N   L++LDLS+NQ+TGEIP  
Sbjct: 369 FNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRG 427

Query: 237 -------HLAMG--------------CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLE 275
                   +++G              C NLE L++++N+L G +      L  LR LQ+ 
Sbjct: 428 FGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVS 487

Query: 276 GNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF 335
            N   G IP+ +     L  LYL++N  +G+IPR + NLT L  + M  N LEGPIP E 
Sbjct: 488 YNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEM 547

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDL 394
             +  L +LD+S+N  SG +P+ F  L S+T + L  N  +G +   +  + S L T D+
Sbjct: 548 FDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP-ASLKSLSLLNTFDI 606

Query: 395 SYNLLNGSIP-DWIDGLSQLS-HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP 452
           S NLL G+IP + +  L  +  +L   NN L G +P +L  L  +Q +DLSNN   G IP
Sbjct: 607 SDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIP 666

Query: 453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS 512
                 K              F + FS     GH+  +              +FQG  + 
Sbjct: 667 RSLQACK------------NVFTLDFSQNNLSGHIPDE--------------VFQG--MD 698

Query: 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
           ++  L+LS N   G IP   GN+T + +L+LS NNLTG IP + +NL  ++ L L     
Sbjct: 699 MIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKL----- 753

Query: 573 NGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSP 632
                              A NNL G +PE    F   N +   GNT LCG   P+   P
Sbjct: 754 -------------------ASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL--KP 791

Query: 633 TTMSEAS 639
            T+ + S
Sbjct: 792 CTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 204/639 (31%), Positives = 292/639 (45%), Gaps = 66/639 (10%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIP 58
           ++ N L G +P  L+N+TSL  L + SNQLTG I S  L  L +I  L + +N     IP
Sbjct: 102 LSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQ-LGSLVNIRSLRIGDNELVGDIP 160

Query: 59  ISLEPLFNHSRLKIFYAD-NNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLY 117
            +L  L N   L +       PI +++ +         ++ SL L  +Y +G   P  L 
Sbjct: 161 ETLGNLVNLQMLALASCRLTGPIPSQLGR-------LVRVQSLILQDNYLEG-PIPAELG 212

Query: 118 YQHDLEDVHFSRIQMNGEFPNWL--LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLD 175
              DL     +   +NG  P  L  LEN   L  L+L N+SL G     +     L+ L 
Sbjct: 213 NCSDLTVFTAAENMLNGTIPAELGRLEN---LEILNLANNSLTGEIPSQLGEMSQLQYLS 269

Query: 176 VSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIP 235
           +  N  QG IP  + D L  L + ++S N L G IP  F NM+ L  L L+NN L+G +P
Sbjct: 270 LMANQLQGLIPKSLAD-LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLP 328

Query: 236 EHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEG 295
           + +     NLE L LS   L G +        +L+ L L  N   G IP++L +   L  
Sbjct: 329 KSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTD 388

Query: 296 LYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSL 355
           LYL+NN+L G +   + NLT L  +++  N+LEG +P E   L  L++L + +N  SG +
Sbjct: 389 LYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEI 448

Query: 356 PSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSH 415
           P                            NC+SL  +D+  N   G IP  I  L +L+ 
Sbjct: 449 PQ------------------------EIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNL 484

Query: 416 LILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES---YNNSSSPDE 472
           L L  N L G +P  L   +QL +LDL++N L G IP  F   K  E    YNNS     
Sbjct: 485 LHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNS----- 539

Query: 473 QFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG------LDLSCNKLIG 526
                      QG++   +      T  N+++      +  L G       D++ N    
Sbjct: 540 ----------LQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFED 589

Query: 527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKEL 586
            IP ++GN   +  L L  N LTG IP T   ++++  LD+S N L G IP QLV  K+L
Sbjct: 590 EIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKL 649

Query: 587 AVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP 625
               +  N LSG IP W  + +   E     N F+  LP
Sbjct: 650 THIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLP 688

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  223 bits (569), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 208/706 (29%), Positives = 318/706 (45%), Gaps = 68/706 (9%)

Query: 12  WCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIPISLEPLFNHSR 69
           +  +  ++L  +++S+N+L G +  +P   L S+  + LS N     IP S    F  S 
Sbjct: 145 YVFSKCSNLVSVNISNNKLVGKLGFAP-SSLQSLTTVDLSYNILSDKIPESFISDFPAS- 202

Query: 70  LKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSR 129
           LK     +N ++   +             SLS ++  GD   FP  L     LE ++ SR
Sbjct: 203 LKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGD--KFPITLPNCKFLETLNISR 260

Query: 130 IQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEI 189
             + G+ PN                    G +     S ++L+ L +++N   G IP E+
Sbjct: 261 NNLAGKIPN--------------------GEY---WGSFQNLKQLSLAHNRLSGEIPPEL 297

Query: 190 GDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
             +   L+  ++S N   G +PS F     LQ L+L NN L+G+    +      + +L 
Sbjct: 298 SLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLY 357

Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQ---SLSKCSSLEGLYLNNNSLSGK 306
           ++ N++ G +     N  NLR L L  N F G +P    SL     LE + + NN LSG 
Sbjct: 358 VAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGT 417

Query: 307 IPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS--CFHPLSI 364
           +P  LG    L  I +  N L GPIP E   L +L  L +  NN++G++P   C    ++
Sbjct: 418 VPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNL 477

Query: 365 TQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLE 424
             + L+ N+L G +   +   C++++ + LS N L G IP  I  LS+L+ L LGNN+L 
Sbjct: 478 ETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLS 536

Query: 425 GEVPVQLCGLNQLQLLDLSNNNLHGLIP-----------PCFDNTKLHESYNNSSSPDEQ 473
           G VP QL     L  LDL++NNL G +P           P   + K      N    D  
Sbjct: 537 GNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTD-- 594

Query: 474 FKILFSIKGHQGHVE------KKIQEFFEFTTKNIAYIFQGKVLSLLSG------LDLSC 521
                  +G  G VE      ++++      +     I+ G  +   S        D+S 
Sbjct: 595 ------CRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISY 648

Query: 522 NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV 581
           N + G IPP  GN+  +Q LNL HN +TG IP +F  LK I  LDLS+N L G +P  L 
Sbjct: 649 NAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLG 708

Query: 582 ELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIE 641
            L  L+   V+ NNL+G IP +  Q  TF  + Y  N+ LCG+PL  C S       S  
Sbjct: 709 SLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRI 767

Query: 642 NERDDNLIDTDSFFITFT-TSYVIVIFGIVTVLYVNSYWRHRWFYF 686
           + +   +       I F+   +V+++  +  V  V    + R  Y 
Sbjct: 768 HAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  223 bits (567), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 203/630 (32%), Positives = 308/630 (48%), Gaps = 40/630 (6%)

Query: 6   LRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIPISLEP 63
           L+ SLP  L    SL+ L +S   LTG++  S L     ++ L LS+N     IP SL  
Sbjct: 93  LQLSLPKNLPAFRSLQKLTISGANLTGTLPES-LGDCLGLKVLDLSSNGLVGDIPWSLSK 151

Query: 64  LFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLE 123
           L N   L+    ++N +  KI    +  +   +L SL L  +   G + P  L     LE
Sbjct: 152 LRN---LETLILNSNQLTGKIPPDISKCS---KLKSLILFDNLLTG-SIPTELGKLSGLE 204

Query: 124 DVHFS-RIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQ 182
            +      +++G+ P+ +  + + L  L L   S++G     +   + L  L +      
Sbjct: 205 VIRIGGNKEISGQIPSEI-GDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMIS 263

Query: 183 GHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGC 242
           G IP ++G+    L+   +  N+L GSIP   G +  L+ L L  N L G IPE +   C
Sbjct: 264 GEIPSDLGNC-SELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIG-NC 321

Query: 243 VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS 302
            NL+ + LS N L G + S    L  L    +  N F G IP ++S CSSL  L L+ N 
Sbjct: 322 SNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQ 381

Query: 303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS-CFHP 361
           +SG IP  LG LT L       N LEG IP        LQ LD+S N+++G++PS  F  
Sbjct: 382 ISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFML 441

Query: 362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN 421
            ++T++ L  N L G +      NCSSLV L L +N + G IP  I  L +++ L   +N
Sbjct: 442 RNLTKLLLISNSLSGFIPQ-EIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSN 500

Query: 422 NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKIL-FSI 480
            L G+VP ++   ++LQ++DLSNN+L G +P             N  S     ++L  S 
Sbjct: 501 RLHGKVPDEIGSCSELQMIDLSNNSLEGSLP-------------NPVSSLSGLQVLDVSA 547

Query: 481 KGHQGHVEKKIQEFFEFTTKNIAY-IFQGKV---LSLLSGL---DLSCNKLIGHIPPQVG 533
               G +   +          ++  +F G +   L + SGL   DL  N+L G IP ++G
Sbjct: 548 NQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELG 607

Query: 534 NLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592
           ++  ++  LNLS N LTG IPS  ++L ++  LDLS+N L G +   L  ++ L   +++
Sbjct: 608 DIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNIS 666

Query: 593 YNNLSGEIPEWKAQFATFNENSYEGNTFLC 622
           YN+ SG +P+ K  F   +    EGN  LC
Sbjct: 667 YNSFSGYLPDNKL-FRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  219 bits (557), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 287/597 (48%), Gaps = 81/597 (13%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIPISLEPLFNHSRLK 71
           ++++  L+ + +S N   GSI S  L   + +E + LS+N F  +IP +L  L N   L 
Sbjct: 88  ISHLKHLKKVVLSGNGFFGSIPSQ-LGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLS 146

Query: 72  IFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQ 131
           +F+             ++L  P                  FP+ L     LE V+F+   
Sbjct: 147 LFF-------------NSLIGP------------------FPESLLSIPHLETVYFTGNG 175

Query: 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
           +NG  P+ +  N ++L  L L ++  +GP    + +   L+ L +++NN  G +PV + +
Sbjct: 176 LNGSIPSNI-GNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNN 234

Query: 192 ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251
            L  L+  ++  N+L G+IP  F +   +  + LSNNQ TG +P  L   C +L      
Sbjct: 235 -LENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLG-NCTSLREFGAF 292

Query: 252 NNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 311
           + +L G + S    L  L  L L GNHF G IP  L KC S+  L L  N L G+IP  L
Sbjct: 293 SCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGEL 352

Query: 312 GNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS-ITQVHLS 370
           G L+ L ++ +  N+L G +P+    + SLQ L +  NN+SG LP     L  +  + L 
Sbjct: 353 GMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALY 412

Query: 371 KNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ 430
           +N   G +      N SSL  LDL+ N+  G IP  +    +L  L+LG N LEG VP  
Sbjct: 413 ENHFTGVIPQDLGAN-SSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSD 471

Query: 431 LCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKK 490
           L G + L+ L L  NNL G +P                                  VEK+
Sbjct: 472 LGGCSTLERLILEENNLRGGLP--------------------------------DFVEKQ 499

Query: 491 IQEFFEFTTKNIAYIFQGKV------LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS 544
              FF+ +  N    F G +      L  ++ + LS N+L G IPP++G+L +++ LNLS
Sbjct: 500 NLLFFDLSGNN----FTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLS 555

Query: 545 HNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
           HN L G++PS  SN  ++  LD S+N LNG IP  L  L EL   S+  N+ SG IP
Sbjct: 556 HNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIP 612

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  213 bits (543), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 205/679 (30%), Positives = 317/679 (46%), Gaps = 80/679 (11%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIP 58
           ++ N L G LP  L+ +  L  LD+S N  +GS+  S    L ++  L +SNN     IP
Sbjct: 120 LSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIP 179

Query: 59  ISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTF-----P 113
             +  L N S L   Y   N  + +I           ++ ++SL  ++     F     P
Sbjct: 180 PEIGKLSNLSNL---YMGLNSFSGQIPS---------EIGNISLLKNFAAPSCFFNGPLP 227

Query: 114 KFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRL 173
           K +     L  +  S   +    P    E +  L  L+LV+  L G     + + + L+ 
Sbjct: 228 KEISKLKHLAKLDLSYNPLKCSIPKSFGELHN-LSILNLVSAELIGLIPPELGNCKSLKS 286

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE 233
           L +S N+  G +P+E+ +I   L++F+   N L GS+PS  G   +L  L L+NN+ +GE
Sbjct: 287 LMLSFNSLSGPLPLELSEI--PLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGE 344

Query: 234 IPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSL 293
           IP H    C  L+ L+L++N L G +        +L  + L GN   G I +    CSSL
Sbjct: 345 IP-HEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSL 403

Query: 294 EGLYLNNNSL-----------------------SGKIPRWLGNLTWLIHIIMPKNHLEGP 330
             L L NN +                       +G+IP+ L   T L+      N LEG 
Sbjct: 404 GELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGY 463

Query: 331 IPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSL 389
           +P E  +  SL+ L +SDN ++G +P     L S++ ++L+ NM  G++      +C+SL
Sbjct: 464 LPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPV-ELGDCTSL 522

Query: 390 VTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCG-LNQLQLLDLSNNNLH 448
            TLDL  N L G IPD I  L+QL  L+L  NNL G +P +     +Q+++ DLS    H
Sbjct: 523 TTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHH 582

Query: 449 GLIPPCFDNTKLHESYNNSSSP-DEQFK---ILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           G+    FD      SYN  S P  E+     +L  I     H+  +I       T     
Sbjct: 583 GI----FD-----LSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTIL 633

Query: 505 IFQGKVLS-----------LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP 553
              G  L+            L GL+L+ N+L GHIP   G L  +  LNL+ N L G +P
Sbjct: 634 DLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVP 693

Query: 554 STFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE-----WKAQFA 608
           ++  NLK++  +DLS+N L+G++  +L  +++L    +  N  +GEIP       + ++ 
Sbjct: 694 ASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYL 753

Query: 609 TFNENSYEGN--TFLCGLP 625
             +EN   G   T +CGLP
Sbjct: 754 DVSENLLSGEIPTKICGLP 772

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  209 bits (531), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 202/712 (28%), Positives = 317/712 (44%), Gaps = 95/712 (13%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNH--SRLK 71
           L + + L+ L+VSSN L      S    L S+E L LS N       +  + +     LK
Sbjct: 144 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 203

Query: 72  IFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQ 131
                 N I+  +  S  +      ++S + S+          FL     L+ +  S  +
Sbjct: 204 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-------PFLGDCSALQHLDISGNK 256

Query: 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
           ++G+F +  +   T+L+ L++ ++   GP  +P    + L+ L ++ N F G IP  +  
Sbjct: 257 LSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSG 313

Query: 192 ILPRLISFNISMNALDGSIPSSFG-------------------------NMNLLQILDLS 226
               L   ++S N   G++P  FG                          M  L++LDLS
Sbjct: 314 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 373

Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLIN-----LRWLQLEGNHFVG 281
            N+ +GE+PE L     +L  L LS+N+  G +     NL       L+ L L+ N F G
Sbjct: 374 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTG 430

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           +IP +LS CS L  L+L+ N LSG IP  LG+L+ L  + +  N LEG IP E  ++ +L
Sbjct: 431 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 490

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           + L +  N+++G +PS                           NC++L  + LS N L G
Sbjct: 491 ETLILDFNDLTGEIPSGLS------------------------NCTNLNWISLSNNRLTG 526

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH 461
            IP WI  L  L+ L L NN+  G +P +L     L  LDL+ N  +G IP         
Sbjct: 527 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 586

Query: 462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF--------EFTTKN----IAYIFQGK 509
            + N  +     +     +K  + H    + EF           +T+N     + ++ G 
Sbjct: 587 IAANFIAGKRYVYIKNDGMK-KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 645

Query: 510 VLSLLSG------LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563
                        LD+S N L G+IP ++G++  +  LNL HN+++G IP    +L+ + 
Sbjct: 646 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 705

Query: 564 SLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCG 623
            LDLS NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF    +  N  LCG
Sbjct: 706 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 764

Query: 624 LPLPICRSPTTMSEASIE---NERDDNLIDTDSFFITFTTSYVIVIFGIVTV 672
            PLP C        A  +     R  +L  + +  + F+    + IFG++ V
Sbjct: 765 YPLPRCDPSNADGYAHHQRSHGRRPASLAGSVAMGLLFS---FVCIFGLILV 813

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	693
255581263	912	serine-threonine protein kinase, plant-t	0.974	0.740	0.522	0.0
224123984	1016	predicted protein [Populus trichocarpa]	0.991	0.676	0.481	1e-161
224142481	781	predicted protein [Populus trichocarpa]	0.943	0.837	0.480	1e-159
224073382	1309	predicted protein [Populus trichocarpa]	0.987	0.522	0.467	1e-156
224073436	1014	predicted protein [Populus trichocarpa]	0.991	0.677	0.465	1e-156
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.979	0.463	0.462	1e-155
224134891	953	predicted protein [Populus trichocarpa]	0.989	0.719	0.462	1e-153
224073422	969	predicted protein [Populus trichocarpa]	0.976	0.698	0.464	1e-152
224073452	710	predicted protein [Populus trichocarpa]	0.965	0.942	0.466	1e-149
224098008	1097	predicted protein [Populus trichocarpa]	0.945	0.597	0.468	1e-148

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/696 (52%), Positives = 475/696 (68%), Gaps = 21/696 (3%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           ++ NE  G LPWCL+N+TSL++LD+SSNQ  G IS+SPL  L S+ +L +SNNHF +P S
Sbjct: 234 VSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFS 293

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           L P FNHS LK     NN I     ++   + P+FQL S+ + S YG   TFP FLY+Q+
Sbjct: 294 LGPFFNHSNLKHIRGQNNAI---YLEAELHSAPRFQLISI-IFSGYGICGTFPNFLYHQN 349

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
           +L+ V  S + + GEFPNWLL NNT+L  L LVN+SL+G  +LP+H H +L  LD+SNN+
Sbjct: 350 NLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNH 409

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
              HIP+EIG  LP+L   N+S N  DGSIPSSFGNMN L+ILDLSNNQL+G IPEHLA 
Sbjct: 410 VHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLAT 469

Query: 241 GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN 300
           GC +L  L LSNNSL+G MFS+ FNL NL WL+L+ NHF G IP+SLSK S+L  + L++
Sbjct: 470 GCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK-SALSIMDLSD 528

Query: 301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH 360
           N LSG IP W+GNL++L ++I+  N L+GPIPVEFC L+ L++LD+++N++SG LPSC  
Sbjct: 529 NHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLS 588

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
           P SI  VHLS+NM+ G      F     LVTLDLS N + G IP  I G++ L  L L +
Sbjct: 589 PSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKS 647

Query: 421 NNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSI 480
           N  +GE+P Q+CGL QL L+ L++NNL G IP C     L    ++S +PD         
Sbjct: 648 NRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----LQLDQSDSLAPDVPPVPNPLN 702

Query: 481 KGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQT 540
             +       ++  + FTTK  +Y +QGK+LS +SG+D SCNKL G IPP++GN + I +
Sbjct: 703 PYYL-----PVRPMY-FTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPEMGNHSAIYS 756

Query: 541 LNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI 600
           LNLS+N  TG IPSTFSNLKQIESLDLSYN LNG IP QL+ELK L+ FSVA+NNL G+ 
Sbjct: 757 LNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSVAHNNLFGKT 816

Query: 601 PEWKAQFATFNENSYEGNTFLCGLPLPIC---RSPTTMSEASIENERDDNLIDTDSFFIT 657
           P+   QFATF  +SYEGN  LCGLPLP     R  ++   AS  +E + N +D ++F+ +
Sbjct: 817 PKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESNFLDMNTFYGS 875

Query: 658 FTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
           F  SY  VI G+  VLY+N  WR  WF FV++ I+S
Sbjct: 876 FIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 342/710 (48%), Positives = 440/710 (61%), Gaps = 23/710 (3%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +++N L GSLP C  N++SL++LDVS NQ  G+I+SSPL  L S+E +SLSNNHF +PIS
Sbjct: 296 LSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPIS 355

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLA--SLSLSSSYGDGVTFPKFLYY 118
           ++P  NHS L+ F +DNN +  +    H L  PKFQL   SLS SSS    V  P FLY 
Sbjct: 356 MKPFMNHSSLRFFSSDNNRLVTEPMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYN 414

Query: 119 QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSN 178
           QHDL  +  S+    G FP+WLL+NNT+L QL L  +S  G  +L  H +  +  +D+SN
Sbjct: 415 QHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISN 474

Query: 179 NNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
           NN  G IP  I  I   L +  ++ N L G IPS  GN + L +LDLSNNQL+    E  
Sbjct: 475 NNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF 534

Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSL-EGLY 297
               + L FL LSNN+L G + +   N   L +L L  N+F G+I    S   ++   L 
Sbjct: 535 ----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLD 590

Query: 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
           L+NN  SG +PRW  NLT +  I + KNH  GPIPVEFC L  L+ LD+SDNN+  S+PS
Sbjct: 591 LSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPS 650

Query: 358 CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
           CF+P  IT VHLSKN L G L  G F+N SSLVTLDL  N   GSI +WI  LS LS L+
Sbjct: 651 CFNPPHITHVHLSKNRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLL 709

Query: 418 LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSS--------- 468
           L  NN +GE  VQLC L QL +LD+S N L G +P C  N    ESY  +S         
Sbjct: 710 LRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGS 769

Query: 469 SPDEQFKILFSIKGH---QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI 525
           +P E+    F+         ++    +E  EFT K++ Y ++GK+LS +SG+DLS NK  
Sbjct: 770 TPIEKAYYEFNQTRALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFS 829

Query: 526 GHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKE 585
           G IPP++GNL+ +  LNLSHNNLTG IP+TFSNLKQIES DLSYN L+G IPH+L E+  
Sbjct: 830 GAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITT 889

Query: 586 LAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENER- 644
           L VFSVA+NNLSGE PE K QF TF+E+SYEGN FLCG PL    S        + N++ 
Sbjct: 890 LEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQ 949

Query: 645 -DDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
            DD  ID + F+I+    Y++V+ GI  VLY+N YWR  WF F++  I +
Sbjct: 950 EDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDT 999

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 335/697 (48%), Positives = 444/697 (63%), Gaps = 43/697 (6%)

Query: 4   NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP 63
           N+L G LP CL N+ +L++LD+S N  +G+IS S +  LTSI +L LS+NHF IPISL P
Sbjct: 87  NDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPISLGP 145

Query: 64  LFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLE 123
            FN S LK    D+N I       H L  P+FQL  LSL+  +G G TFPKFLYYQHDL+
Sbjct: 146 FFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQRLSLAC-HGFGGTFPKFLYYQHDLQ 203

Query: 124 DVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQG 183
            V  S I++ GEFP+WLL+NNTKL  L LVN SL+G  +LP  SH +L  LD+S N+ Q 
Sbjct: 204 FVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQN 263

Query: 184 HIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCV 243
            IP +IG   P L   N+S N   GSIPSS  NM+ L +LDLSNN L+G IPE L  GC+
Sbjct: 264 QIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCL 323

Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
           +L  L LSNN LKG  F R+FNL  L  L L GN   G +P SLS  S LE L ++ N+L
Sbjct: 324 SLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNL 383

Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
           SGKIPRW+G ++ L ++ + +N+L G +P  FC                          +
Sbjct: 384 SGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFC-----------------------SSRT 420

Query: 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
           +T+V+LSKN L G L G     C SL  LDLS+N   G IP+ I  L +LS L+LG NNL
Sbjct: 421 MTEVYLSKNKLEGSLIGA-LDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNL 479

Query: 424 EGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFD---------NTKLHESYNNSSSPDEQF 474
           EG++P QLC L +L L+DLS+N+L G I PC            T L+ S N+    +   
Sbjct: 480 EGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGRENRGP 539

Query: 475 KILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGN 534
           +I+F +   +   +  + +  EFTTK+I+Y F+G +L  +SG+DLSCN L G IP ++GN
Sbjct: 540 QIVFPVPAVE---DPSMNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELGN 596

Query: 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594
           L+ IQ LNLSHN+LTG IP TFSNLK+IESLDLSYN LNG+IP QL++L  L+ FSVA+N
Sbjct: 597 LSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHN 656

Query: 595 NLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP--ICRS--PTTMSEASIENERDDNLID 650
           NLSG+ PE  AQF+TFN++ YEGN  LCG PL     R+  P+ +  +    + ++ +ID
Sbjct: 657 NLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVID 716

Query: 651 TDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFV 687
            ++F +TF+ +Y++V+  I +VLY+N  WR  WFYF+
Sbjct: 717 MEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFI 753

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 338/723 (46%), Positives = 440/723 (60%), Gaps = 39/723 (5%)

Query: 1    MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
            ++ N   GSLP CL N++SL++LD+S NQ TG+I+ SPL  L S+E LSLSNN F +P S
Sbjct: 579  LSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFLSLSNNLFEVPTS 638

Query: 61   LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLS-SSYGDGVTFPKFLYYQ 119
            ++P  NHS LK F  +NN +  +      L  PKFQL   SLS ++    V  P FLYYQ
Sbjct: 639  MKPFMNHSSLKFFCNENNRLVIEPAAFDHLI-PKFQLVFFSLSKTTEALNVEIPNFLYYQ 697

Query: 120  HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
            + L  +  S   + G FP+WLL+NNT+L QL L  +S+ G  +L  H +  +  LD+SNN
Sbjct: 698  YHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHPYPKMTELDISNN 757

Query: 180  NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
            N  G IP +I  I P L    ++ N   G IPS  GNM+ L +LDLSNNQL+    E L 
Sbjct: 758  NMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSNNQLSTVKLELLT 817

Query: 240  MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQS-LSKCSSLEGLYL 298
                 + FL LSNN+L G + +  FN     +L L  N+F G+I  S L+   +   L L
Sbjct: 818  T----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTWIVLDL 873

Query: 299  NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF-CHLYSLQILDISDNNISGSLPS 357
            +NN  SG +PRW  N T LI I + KNH EGPI   F C L  L+ LD+S+NN+ G +PS
Sbjct: 874  SNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLSENNLFGYIPS 933

Query: 358  CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
            CF+   IT VHLSKN L G LK   F+N SSLVT+DL  N   GSIP+W+  LS LS L+
Sbjct: 934  CFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSIPNWVGNLSSLSVLL 992

Query: 418  LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES-------------- 463
            L  N+L+GE+PVQLC L QL +LD+S N L G +P C +N    ES              
Sbjct: 993  LRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQKALMNLGGFLLP 1052

Query: 464  ------YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517
                  YN    P +   I   +KG+  +     +E  EFTTKN+ Y ++GK+LS +SG+
Sbjct: 1053 GFIEKAYNEIMGPPQVNSIYTLLKGYWPNF---TEEVIEFTTKNMYYGYKGKILSYMSGI 1109

Query: 518  DLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP 577
            DLS N  +G IPP+ GNL+ I +LNLSHNNLTG IP+TFSNLK+IESLDLSYN  NG IP
Sbjct: 1110 DLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLSYNNFNGDIP 1169

Query: 578  HQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP-ICRSPTTMS 636
             QL E+  L VFSVA+NNLSG+ PE K QF TF+E+ YEGN FLCG PL   C     +S
Sbjct: 1170 PQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEVVLS 1229

Query: 637  EASI------ENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMW 690
            +  +      + + DD  ID + F+I+F+  Y +V+  I  VLY+N YWR RW YF+E  
Sbjct: 1230 QPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWRRRWLYFIEDC 1289

Query: 691  ITS 693
            I +
Sbjct: 1290 IDT 1292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 337/724 (46%), Positives = 442/724 (61%), Gaps = 37/724 (5%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           ++ N L GSLP CL N++SL++LDVS NQ TG+I+S PL  LTS+E LSLSNN F +PIS
Sbjct: 280 LSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPIS 339

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLS-SSYGDGVTFPKFLYYQ 119
           ++P  NHS LK F ++NN +  +      L  PKFQL    LS ++    V  P FLYYQ
Sbjct: 340 MKPFMNHSSLKFFSSENNKLVTEPAAFDNLI-PKFQLVFFRLSKTTEALNVKIPDFLYYQ 398

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
           +D+  +  S   +   FP+WLL+NNT+L QL L N+S  G  +L  H + ++  LD+SNN
Sbjct: 399 YDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNN 458

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
           N  G IP +I  I P + S  ++ N   G IPS  GN++ L+ILDLSNNQL+    E L 
Sbjct: 459 NMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLT 518

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSL-EGLYL 298
                + FL LSNN+L G + +  FN   L +L L GN+F G+I   L     +   L L
Sbjct: 519 ----TIWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDL 574

Query: 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSC 358
           ++N  SG +PRWL N T LI I + KN+ +GPI  +FC L  L+ LD+S+NN+SG +PSC
Sbjct: 575 SDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSC 634

Query: 359 FHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLIL 418
           F P  IT VHLS+N L G L  G F+N SSLVT+DL  N   GS P+WI  LS LS L+L
Sbjct: 635 FSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLL 693

Query: 419 GNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILF 478
             N+ +GE+PVQLC L QL +LD+S N L G +P C  N    ES   + +      +  
Sbjct: 694 RANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSR 753

Query: 479 SIKG-----------------HQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC 521
           SI+                   +G +    +E  EFTTKN+ Y ++GK LS +SG+DLS 
Sbjct: 754 SIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSN 813

Query: 522 NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV 581
           N  +G IPP+ G+L++I +LNLSHNNLTG IP+TFSNLKQIESLDLSYN LNG IP QL 
Sbjct: 814 NNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLT 873

Query: 582 ELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL------------PIC 629
           ++  L VFSVA+NNLSG  PE K QF TF+E+ YEGN FLCG PL            P+ 
Sbjct: 874 DITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVP 933

Query: 630 RSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEM 689
             P        + + DD  ID + F+I F   Y +V+  IV VLY++ YWR RW YF+E 
Sbjct: 934 SQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIED 993

Query: 690 WITS 693
            I +
Sbjct: 994 CIDT 997

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 330/714 (46%), Positives = 441/714 (61%), Gaps = 35/714 (4%)

Query: 1    MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
            ++DN   GS+  CL N+TSLR LD+S N+ +G++ SS    L  +E LSLS+N F     
Sbjct: 749  LSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPP 808

Query: 61   LEPLFNHSRLKIF--YADNNPINAKITKSHTLT-TPKFQLASLSLSSSYGDGVTFPKFLY 117
            +     HS+L++      NN +   + +S   T  P FQL    LSS      + P FL+
Sbjct: 809  ISSFAKHSKLEVLDLICGNNTL---LLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLH 865

Query: 118  YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVS 177
            YQHDL  V  S   +  +FP WL++NNT+L +L+L N+SL G F LP   +     +D+S
Sbjct: 866  YQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDIS 925

Query: 178  NNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEH 237
            NN  QG +P  I   LP L+  N+S N+ +GSIPS FG M  L  LDLSNN  TG IPE 
Sbjct: 926  NNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPED 984

Query: 238  LAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLY 297
            LAMGC +LE+L LS N L G MF R  NL +LR L+L+ NHF G+IP  LS  S LE LY
Sbjct: 985  LAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLY 1043

Query: 298  LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
            +++NS+SGK+P W+GN++ L  ++MP N LEGPIPVEFC L +L++LD+S+NN+SGSLPS
Sbjct: 1044 VSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPS 1103

Query: 358  CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
            CF P  +  VHL +N L G L    F     L TLD+  N L+G IPDWI   S LS L+
Sbjct: 1104 CFSPSLLIHVHLQENHLTGPLTKA-FTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILL 1162

Query: 418  LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKIL 477
            L  N+ +G++P QLC L+++ +LDLS N+L G IP C +  +    + +      +F I+
Sbjct: 1163 LKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSG-----KFSII 1217

Query: 478  --FSIKG------HQGHVE-----------KKIQEFFEFTTKNIAYIFQGKVLSLLSGLD 518
              F   G      H  H+E              +   EFTTKN    ++G  L  ++G+D
Sbjct: 1218 SYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGID 1277

Query: 519  LSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPH 578
            LS NKL G IPP++GNL+++  LNLSHN LTG IP+ FS LK IESLDLSYN L G IP 
Sbjct: 1278 LSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPG 1337

Query: 579  QLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEA 638
            +L EL  LAVFSVAYNNLSG+IPE  AQF TF ENSY GN +LCG  L   ++ +   E 
Sbjct: 1338 ELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLR--KNCSRAEEE 1395

Query: 639  SIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWIT 692
            +   E +  L D D F+++F  SYV+V+ G+  VLY+N  WR +WF+ +++ IT
Sbjct: 1396 AEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLIT 1449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 331/715 (46%), Positives = 425/715 (59%), Gaps = 29/715 (4%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +A N   GSLP CL N++SL++LDVS NQ TG+ +S PL  L S+E L LSNN F +PIS
Sbjct: 229 LARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPIS 288

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGV--TFPKFLYY 118
           ++P  NHS LK F ++NN +  +      L  PKFQL    LSSS         P FLYY
Sbjct: 289 MKPFLNHSSLKFFSSENNRLVTEPVAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYY 347

Query: 119 QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSN 178
           Q DL  +  S   + G FP+WLL+NNT+L QL L  +   G  +L  H + ++  LD+SN
Sbjct: 348 QLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISN 407

Query: 179 NNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
           NN  G I  +I  I P L +  ++ N   G IPS  GN++ L  LDLSNNQL+    E L
Sbjct: 408 NNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQL 467

Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQ-SLSKCSSLEGLY 297
                 +  L LSNNSL G + +  FN    ++L L GN+F G+I    L     L  L 
Sbjct: 468 T-----IPVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLD 522

Query: 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
           L+NN  SG +PR   N T L  + + KNH +GPIP +FC L  LQ LD+S+NN+SG +PS
Sbjct: 523 LSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPS 582

Query: 358 CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
           CF P  +T VHLSKN L G L  G FFN S LVT+DL  N L GSIP+WI   S LS L+
Sbjct: 583 CFSPPPLTHVHLSKNRLSGPLTYG-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLL 641

Query: 418 LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKIL 477
           L  N+ +GE+PVQLC L QL +LD+S N L G +P C  N    ES   +        +L
Sbjct: 642 LRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVL 701

Query: 478 FSI-KGHQGHVEKKI----------------QEFFEFTTKNIAYIFQGKVLSLLSGLDLS 520
            S+ K +   +   +                +E  EF TKN+ Y ++G +LS +SG+DLS
Sbjct: 702 ESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLS 761

Query: 521 CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL 580
            N   G IP + GNL+ I++LNLSHNN T  IP+TFSNLKQIESLDLSYN LNG IP QL
Sbjct: 762 NNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQL 821

Query: 581 VELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP-ICRSPTTMSEAS 639
            E+  L VFSVA+NNLSG  PE K QF TF+E+ YEGN FLCG PL   C      S+  
Sbjct: 822 TEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPV 881

Query: 640 IENERDD-NLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
            ++E+ D   ID + F+I+F   Y +V+  I  VLY+N YWR RW YF+E  I +
Sbjct: 882 PDDEQGDVGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDT 936

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 332/714 (46%), Positives = 434/714 (60%), Gaps = 37/714 (5%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +A N   G+LP CL N++SL +LDVS NQ TG+I S PL  L S+E LSLSNN F +P S
Sbjct: 255 LARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTS 314

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSL-SSSYGDGVTFPKFLYYQ 119
           ++P  NHS LK F ++NN +  +      L  PKFQL  LSL  ++    V  P FLYYQ
Sbjct: 315 MKPFMNHSSLKFFSSENNRLVTEPAAFDNLI-PKFQLVFLSLLKTTEALNVHIPDFLYYQ 373

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
           +DL  +  S   + G FP+WLL+NNT++ QL L ++S  G  +LP H + ++  LD+SNN
Sbjct: 374 YDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNN 433

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
           N    IP +I  ILP L S  +  N   G IPS  GN++ L +LDLSNNQL+    E L 
Sbjct: 434 NMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLT 493

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQ-SLSKCSSLEGLYL 298
                L FL LSNN+L G +    FN   L +L L GN+F G+I   SL +      L L
Sbjct: 494 ----TLMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDL 549

Query: 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF-CHLYSLQILDISDNNISGSLPS 357
           +NN  SG +PRW  N T L  I + KNH +GPIP +F C    L+ LD+S+NN+SG +PS
Sbjct: 550 SNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPS 609

Query: 358 CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
           CF P  IT +HLSKN L G L  G F+N SSLVT+DL  N    SIP+WI  LS LS L+
Sbjct: 610 CFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLL 668

Query: 418 LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES----------YNNS 467
           L  N+ +           QL +LD+S N L G +P C  N    ES          ++ S
Sbjct: 669 LRANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDIS 718

Query: 468 SSPDEQF------KILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC 521
            S ++ +       ++ S+   +G     I+E  EFTTK ++Y ++GKVL+ +SG+DLS 
Sbjct: 719 RSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSN 778

Query: 522 NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV 581
           N  +G IPP+ GNL+ I +LNLSHNNLTG IP+TFSNLKQIESLDLSYN LNG IP QL 
Sbjct: 779 NNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLT 838

Query: 582 ELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIE 641
           E+  L VFSVA+NNLSG+ PE K QF TF+E+ YEGN FLCG PL    S   +S   + 
Sbjct: 839 EITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVP 898

Query: 642 NER--DDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
           N+   DD  +D + F+I+F   Y +V+  I  VLY+N YWR RW +F+E  I +
Sbjct: 899 NDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDT 952

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 327/701 (46%), Positives = 421/701 (60%), Gaps = 32/701 (4%)

Query: 17  MTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYAD 76
           M+SL++LDVS NQ TG+I+  PL  L S+E LSLSNN F +PIS++P  NHS LK F ++
Sbjct: 1   MSSLQLLDVSENQFTGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSE 60

Query: 77  NNPINAKITKSHTLTTPKFQLASLSLSSSYGDGV--TFPKFLYYQHDLEDVHFSRIQMNG 134
           NN +  +      L  PKFQL    LSSS         P FLYYQ DL  +  S   + G
Sbjct: 61  NNKLVTEPAAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITG 119

Query: 135 EFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILP 194
            FP+WLL+NNT+L QL L ++S  G  +L  H H ++  LD+SNNN  G IP +I  I P
Sbjct: 120 MFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFP 179

Query: 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254
            L +  ++ N   G IPS  GN++ L  LDLSNNQL+    E L    V    L LSNN+
Sbjct: 180 NLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWV----LKLSNNN 235

Query: 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGN 313
           L G + +  FN   L +L L GN+F G+I    L + +    L L+NN  SG +PR   N
Sbjct: 236 LGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVN 295

Query: 314 LTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNM 373
            + L  I +  NH +GPIP +FC    L+ LD+S+NN+SG +PSCF P  IT VHLSKN 
Sbjct: 296 FSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNR 355

Query: 374 LHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCG 433
           L G L    FFN S LVT+DL  N   GSIP+WI  LS LS L+L  N+ +GE+P+QLC 
Sbjct: 356 LSGPLTYA-FFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCL 414

Query: 434 LNQLQLLDLSNNNLHGLIPPCFDNTKLHES---------YNNSSSPDEQFKILFSIKG-- 482
           L QL +LD+S+N L G +P C  N    +S         Y   S   E  K  + I G  
Sbjct: 415 LEQLSILDVSHNQLSGPLPSCLGNLTFKKSDKKAILEVAYGFISESIE--KAYYEIMGPP 472

Query: 483 --------HQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGN 534
                       +    +E  EFTTKN+ Y ++GKVL+ + G+DLS N  IG IPP+ GN
Sbjct: 473 LVDSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGN 532

Query: 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594
           L++I ++NLSHNNLTG IP+TFSNL  IESLDLSYN LNG IP Q  E+  L VFSVA+N
Sbjct: 533 LSKILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHN 592

Query: 595 NLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP-ICRSPTTMSEASIENER-DDNLIDTD 652
           NLSG+ PE   QF TF+E+ YEGN FLCG PLP  C     +S+    +E+ DD  ID +
Sbjct: 593 NLSGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDME 652

Query: 653 SFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
            F+I+F   Y +V+  I  VLY+N YWR RW YF+E  I +
Sbjct: 653 FFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDT 693

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 329/702 (46%), Positives = 418/702 (59%), Gaps = 47/702 (6%)

Query: 1    MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
            +A N   G+LP CL N++SL++LDVS NQ TG+I+  PL  L S+E LSLSNN F +PIS
Sbjct: 417  LARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNLFEVPIS 476

Query: 61   LEPLFNHSRLKIFYADNNPINAKITKSHTLTT--PKFQLASLSLSSS---YGDGVTFPKF 115
            ++P  NHS LK F ++NN +   +T+S       PKFQL    LSSS       V    F
Sbjct: 477  MKPFMNHSSLKFFSSENNRL---VTESAAFDNLIPKFQLVFFRLSSSPTSEALNVEILDF 533

Query: 116  LYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLD 175
            LYYQ+DL  +  S   + G FP+WLL+NNT++ QL L  +S  G  +L  H + ++  LD
Sbjct: 534  LYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELD 593

Query: 176  VSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIP 235
            +SNNN  G IP +I  I P L    ++ N   G IPS  GN + L  LDLSNNQL+    
Sbjct: 594  ISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKL 653

Query: 236  EHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQ-SLSKCSSLE 294
            E L      ++ L LSNNSL G + +  FN    ++L L GN+F G+I    L       
Sbjct: 654  EQLT----TIQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWS 709

Query: 295  GLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGS 354
             L L+NN  SG +PR   N T+   + + KN  +GPIP +FC L  L+ LD+SDN +SG 
Sbjct: 710  VLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGY 769

Query: 355  LPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS 414
            +PSCF+P  IT +HLSKN L G L  G F+N SSLVT+DL  N   GSIP+WI  LS LS
Sbjct: 770  MPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNWIGNLSSLS 828

Query: 415  HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQF 474
             L+L  NN +GE+ VQLC L QL +LD+S N L G +P C  N  L E   N+       
Sbjct: 829  VLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEIPENARGS---- 884

Query: 475  KILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGN 534
            +I FS+                           GKVLS + G+DLS N  +G IPP+ GN
Sbjct: 885  RIWFSV--------------------------MGKVLSYMYGIDLSNNNFVGAIPPEFGN 918

Query: 535  LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594
            L++I +LNLSHNNLTG IP+TFSNLKQIESLDLSYN LNG IP QL E+  L VFSVAYN
Sbjct: 919  LSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITTLEVFSVAYN 978

Query: 595  NLSGEIPEWKAQFATF-NENSYEGNTFLCGLPLPICRSPTTMSEASIENER--DDNLIDT 651
            NLSG  PE K QF TF +EN YEGN FLCG PL    S   +    + N+   DD  ID 
Sbjct: 979  NLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPNDEQGDDGFIDM 1038

Query: 652  DSFFITFTTSYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
            + F+I+F   Y +V+  I  VLY+N YWR RW YF+E  I +
Sbjct: 1039 EFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINT 1080

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	693
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.976	0.677	0.376	1.8e-110
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.975	0.692	0.376	2e-102
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.888	0.568	0.379	3.1e-99
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.974	0.757	0.353	2e-97
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.974	0.721	0.340	6e-87
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.968	0.738	0.323	6e-80
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.903	0.648	0.336	3.3e-79
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.880	0.520	0.307	4.5e-61
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.893	0.541	0.308	1.8e-60
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.906	0.774	0.297	6.4e-60

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
 Identities = 266/707 (37%), Positives = 379/707 (53%)

Query:     1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
             +++N+L G  P CL ++T LR+LD+SSNQLTG++ S+ L  L S+E LSL  N+F    S
Sbjct:   265 LSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLFGNNFEGFFS 323

Query:    61 LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
             L  L N S+LK+   D+   N+   +  T   PKFQL  ++L S   + V  P FL +Q 
Sbjct:   324 LGLLANLSKLKVLRLDSQS-NSLEVEFETSWKPKFQLVVIALRSCNLEKV--PHFLLHQK 380

Query:   121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
             DL  V  S  Q++G FP+WLLENNTKL  L L N+S    F+LP  +H +L  L+VS N 
Sbjct:   381 DLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH-NLLFLNVSVNK 438

Query:   181 FQGHIPVE-IGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
             F  H+ ++  G ILP L+  N++ N   G++PSS  NM  ++ LDLS+N+  G++P    
Sbjct:   439 FN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFL 497

Query:   240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
              GC NL  L LS+N L G +F    N   L  + ++ N F G I +      SL  L ++
Sbjct:   498 KGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDIS 557

Query:   300 NNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCF 359
             NN L+G IP W+G    L  + +  N LEG IP    ++  LQ+LD+S N +SG +P   
Sbjct:   558 NNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP-- 615

Query:   360 HPLSITQ---VHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL 416
             H  SI     + L  N L G +      N   ++ LDL  N L+G++P++I+    +S L
Sbjct:   616 HVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPEFIN-TQNISIL 671

Query:   417 ILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNT-----KLHESYN------ 465
             +L  NN  G++P                   +G IP C  NT     K  +SY       
Sbjct:   672 LLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSR 731

Query:   466 -NSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKL 524
               ++     F+ L  I       E   Q   EF TK+    + G  L LL G+DLS N+L
Sbjct:   732 FGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENEL 791

Query:   525 IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK 584
              G IP ++G L  ++ LNLSHNNL+G+I  +FS LK +ESLDLS+N+L G IP QL ++ 
Sbjct:   792 SGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMI 851

Query:   585 ELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENER 644
              LAVF+V+YNNLSG +P+ + QF TF   SY GN  LCG  + I  +           E 
Sbjct:   852 SLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNPLLCGKSIDISCASNNFHPTDNGVEA 910

Query:   645 DDNLXXXXXXXXXXXXXYVIVIFGIVTVLYVNSYWRHRWFYFVEMWI 691
             D++              YV ++ GI+  L  +S W   WFY V+ ++
Sbjct:   911 DESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 269/715 (37%), Positives = 376/715 (52%)

Query:     4 NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP 63
             N   G LP CL N+  LR+LD+SSNQL+G++ +S    L S+E LSLS+N+F    SL P
Sbjct:   270 NYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNP 328

Query:    64 LFNHSRLKIFYADNNPINAKI-TKSHTLTTPKFQLASLSLS-SSYGDGVTFPKFLYYQHD 121
             L N ++LK+F   +     ++ T+S+ L  PKFQL   +L   S G     P FL YQ +
Sbjct:   329 LANLTKLKVFRLSSTSEMLQVETESNWL--PKFQLTVAALPFCSLGK---IPNFLVYQTN 383

Query:   122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNF 181
             L  V  S  +++G+ P WLLENN +L+ L L N+S    F++P   H+ L++LD S N+ 
Sbjct:   384 LRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDI 441

Query:   182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
              G +P  IG +LPRL+  N S N   G++PSS G MN +  LDLS N  +GE+P  L  G
Sbjct:   442 TGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTG 501

Query:   242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
             C +L  L LS+NS  G +      L +L  L++  N F GEI   L    +L     +NN
Sbjct:   502 CFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNN 561

Query:   302 SLSGKIPRWLG-NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCF- 359
              L+G I   +  + + LI +++  N LEG +P     ++ L  LD+S N +SG LPS   
Sbjct:   562 RLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVV 621

Query:   360 HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG 419
             + +   ++ L  N   G L      N      LDL  N L+GSIP +++   ++  L+L 
Sbjct:   622 NSMYGIKIFLHNNSFTGPLPVTLLENA---YILDLRNNKLSGSIPQFVN-TGKMITLLLR 677

Query:   420 NNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDN--TKLHESYNNS------SSPD 471
              NNL G +P                   +G+IPPC ++  T+L E    S      S  D
Sbjct:   678 GNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGD 737

Query:   472 ----EQFKILFSIKGHQGHVEKK--IQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI 525
                 E ++  F +     + +    I E  EF  K     F G  L  + GLDLS N+L 
Sbjct:   738 SLQMEFYRSTFLVDEFMLYYDSTYMIVEI-EFAAKQRYDSFSGGTLDYMYGLDLSSNELS 796

Query:   526 GHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKE 585
             G IP ++G+L++++ LNLS N L+  IP+ FS LK IESLDLSYN L G IPHQL  L  
Sbjct:   797 GVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTS 856

Query:   586 LAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP-ICRSPTTMSEASI---E 641
             LAVF+V++NNLSG IP+   QF TFN+NSY GN  LCG P    C       EA     E
Sbjct:   857 LAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEE 915

Query:   642 NERDDNLXXXXXXXX---XXXXXYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
              E DD+                 Y I + GI+ ++  +  WR  W   V+ +I S
Sbjct:   916 EEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 243/641 (37%), Positives = 348/641 (54%)

Query:     1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
             ++ N L  SLP+CL N+T LR LD+S+NQL G++SS      + +E LSL +N+F     
Sbjct:   365 LSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFL 423

Query:    61 LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
                L N +RL +F   +  +     ++ +   P FQL  L LS+    G T   FL +Q 
Sbjct:   424 FNSLVNQTRLTVFKLSSK-VGVIQVQTESSWAPLFQLKMLYLSNC-SLGSTMLGFLVHQR 481

Query:   121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
             DL  V  S  ++ G FP WL++NNT+L+ + L  +SL    +LPI  H  L++LD+S+N 
Sbjct:   482 DLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNM 539

Query:   181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
                 I  +IG + P L   N S N   G+IPSS G M  LQ+LD+S+N L G++P     
Sbjct:   540 IYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLS 599

Query:   241 GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN 300
             GC +L  L LSNN L+G +FS++ NL  L  L L+GN+F G + + L K  +L  L +++
Sbjct:   600 GCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISD 659

Query:   301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYS-LQILDISDNNISGSLPSCF 359
             N  SG +P W+G ++ L ++ M  N L+GP P  F      ++++DIS N+ SGS+P   
Sbjct:   660 NRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP--FLRQSPWVEVMDISHNSFSGSIPRNV 717

Query:   360 HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG 419
             +  S+ ++ L  N   G L  G  F  + L  LDL  N  +G I + ID  S+L  L+L 
Sbjct:   718 NFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLR 776

Query:   420 NNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKLHESYNN---SSSPDEQFKI 476
             NN+ +  +P                    G IP CF         N+   S   D  F  
Sbjct:   777 NNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSY 836

Query:   477 LFSIKGHQ--GHV----------EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKL 524
             +  +   Q   H+          + K     +F TK+    +QG +L  + GLDLS N+L
Sbjct:   837 ITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNEL 896

Query:   525 IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK 584
              G IP ++G+L  I++LNLS N LTG IP + S LK +ESLDLS NKL+G IP  L +L 
Sbjct:   897 SGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLN 956

Query:   585 ELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP 625
              L   +++YNNLSGEIP +K    TF+E SY GN  LCGLP
Sbjct:   957 SLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLP 996

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 252/713 (35%), Positives = 377/713 (52%)

Query:     1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFY--LTSIEELSLSNNHFHIP 58
             ++ N   G +P C +  + LR+LD+SSN L+G I   P F     S+E LSL +N F   
Sbjct:   185 LSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKI---PYFISDFKSMEYLSLLDNDFEGL 241

Query:    59 ISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSS-SYGDGVTFPKFLY 117
              SL  +   + LK+F   +     +I +++     + QL+S+ LS  + G     P FL+
Sbjct:   242 FSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNLGK---IPGFLW 298

Query:   118 YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVS 177
             YQ +L  +  S   ++G FP WLLENNT+L+ L L N+S      LP  + R L++LD+S
Sbjct:   299 YQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-RTMRRLQILDLS 356

Query:   178 NNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEH 237
              NNF   +P ++G IL  L   N+S N   G++PSS   M  ++ +DLS N  +G++P +
Sbjct:   357 VNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRN 416

Query:   238 LAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLY 297
             L  GC +L +L LS+N   G +  ++ +  +L  L ++ N F G+IP++L     L  + 
Sbjct:   417 LFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVID 476

Query:   298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP- 356
             L+NN L+G IPRWLGN  +L  + +  N L+G IP    ++  L +LD+S N +SGSLP 
Sbjct:   477 LSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPL 535

Query:   357 -SCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSH 415
              S      I  +H   N L G +    ++    L  LDL  N L+G+IP        +S 
Sbjct:   536 RSSSDYGYILDLH--NNNLTGSIPDTLWYG---LRLLDLRNNKLSGNIP-LFRSTPSISV 589

Query:   416 LILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKLHESYNNSSSPD---- 471
             ++L  NNL G++PV                  +  IP C  N       ++++  D    
Sbjct:   590 VLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPA 649

Query:   472 ---EQFKILFSIKGHQGH-VEKKIQ-----EF---FEFTTKNIAYIFQGKVLSLLSGLDL 519
                  F  +++   ++   V  +       +F    EF  K    ++    L+ + GLDL
Sbjct:   650 SLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDL 709

Query:   520 SCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ 579
             S N+L G+IP ++G+L R+++LNLS N+L+G IP +FSNL+ IESLDLS+NKL+G IP Q
Sbjct:   710 SSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQ 769

Query:   580 LVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP-ICRSPTTMSEA 638
             L  L+ L VF+V+YNNLSG IP+ K QF TF E SY GN  LCG P    C   T  S  
Sbjct:   770 LTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGK 828

Query:   639 SIENERDDNLXXXXXXXXXXXXXYVIVIFGIVTVLYVNSYWRHRWFYFVEMWI 691
               E++ +  L             YV V+ G +  L  +S WR  WF  V+ +I
Sbjct:   829 EYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 245/720 (34%), Positives = 345/720 (47%)

Query:     1 MADNELRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH--I 57
             +A N + G +P      + +LR LD+  N   G I    L  L  +  L LS+N     +
Sbjct:   228 LAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLSGDL 286

Query:    58 PISLEPLFNHSRLKIFYADNNPINA-KITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFL 116
             P S   L +   L +  +DNN   +  +     LT  KF +     S         P FL
Sbjct:   287 PSSFSSLESLEYLSL--SDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLE-----KIPSFL 339

Query:   117 YYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDV 176
              YQ  L  V  S   ++G  P WLL NN +L  L L N+S    F +P   H +L++ D 
Sbjct:   340 LYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVH-NLQIFDF 397

Query:   177 SNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
             S NN  G  P ++   LP L+  N S N   G  P+S G M  +  LDLS N  +G++P 
Sbjct:   398 SANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPR 456

Query:   237 HLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGL 296
                 GCV++ FL LS+N   G    R  N  +L  L+++ N F G I   LS  + L  L
Sbjct:   457 SFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRIL 516

Query:   297 YLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP 356
              ++NN LSG IPRWL    +L ++++  N LEG IP     +  L  LD+S N  SG+LP
Sbjct:   517 DMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALP 576

Query:   357 SCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL 416
             S         + L  N   G +   T     S+  LDL  N L+GSIP + D    ++ L
Sbjct:   577 SHVDSELGIYMFLHNNNFTGPIPD-TLLK--SVQILDLRNNKLSGSIPQF-DDTQSINIL 632

Query:   417 ILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNT---KLHE---------SY 464
             +L  NNL G +P                   +G+IP C  N    +L E         S+
Sbjct:   633 LLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSF 692

Query:   465 NNSSSPDEQFKILFSIKGHQGHVEKKI-QEF-FEFTTKNIAYIFQGK------VLSLLSG 516
               +S   E +K  F +   +  V++   QE   +F  K     + G+      +L L+ G
Sbjct:   693 LQTSLEMELYKSTFLVDKIE--VDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYG 750

Query:   517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
             +DLS N+L G IP ++G+L +++TLNLSHN+L G IPS+FS L  +ESLDLS+N L G I
Sbjct:   751 MDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSI 810

Query:   577 PHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP-ICRSPTTM 635
             P  L  L  LAVF V+ NNLSG IP+ + QF TF E SY GN  LCG P    C +  + 
Sbjct:   811 PQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLCGPPTSRSCETNKSP 869

Query:   636 SEASIENERDDNLXXXXXXXX--XXXXXYVIVIFGIVTVLYVNSYWRHRWFYFVEMWITS 693
              EA    E +D+                YV  + G++ ++  +  WR  W   V+ +I S
Sbjct:   870 EEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 234/723 (32%), Positives = 346/723 (47%)

Query:     1 MADNELRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLFY--LTSIEELSLSNNHF-- 55
             ++ N +  S+ W     M +L+ LD+      G +   PL +  L  +  L LS+N    
Sbjct:   202 LSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQL---PLCFGNLNKLRFLDLSSNQLTG 258

Query:    56 HIPISLEPLFNHSRLKIFYADN--------NPINAKITKSHT-LTTPKFQLASLSLSSSY 106
             +IP S   L +   L +  +DN        NP+   +TK    + + K  +  + + S++
Sbjct:   259 NIPPSFSSLESLEYLSL--SDNSFEGFFSLNPLT-NLTKLKVFIFSSKDDMVQVKIESTW 315

Query:   107 GD----GVT---------FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLV 153
                    V           P FL YQ +L  V  S  +++G  P WLLENN +L  L L 
Sbjct:   316 QPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLK 375

Query:   154 NDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSS 213
             N+S    F++P   H +L++LD S NN  G  P   G +LP L+  N S N   G+ PSS
Sbjct:   376 NNSFT-IFQMPTSVH-NLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSS 433

Query:   214 FGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQ 273
              G M  +  LDLS N L+GE+P+     C +L  L LS+N   GH   R  N  +L  L+
Sbjct:   434 MGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLR 493

Query:   274 LEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPV 333
             +  N F G+I   L     L  L ++NN L G++P  L    +L  + +  N L G +P 
Sbjct:   494 INNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP- 552

Query:   334 EFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLD 393
                H+    +L + +NN +G +P  F   SI  + L  N L G +    F +   +  L 
Sbjct:   553 --SHVSLDNVLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIP--QFVDTQDISFLL 607

Query:   394 LSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPP 453
             L  N L G IP  +   S++  L L +N L G +P                   +  +  
Sbjct:   608 LRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYY--VAV 665

Query:   454 CFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSL 513
               ++  L   +  S+   E F++ +S   +   ++ K      + +   A+ F    L+ 
Sbjct:   666 ALESFYL--GFYKSTFVVENFRLDYS---NYFEIDVKFATKQRYDSYIGAFQFSEGTLNS 720

Query:   514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
             + GLDLS N+L G IP ++G+L +++ LNLSHN L+  IP +FS L+ IESLDLSYN L 
Sbjct:   721 MYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQ 780

Query:   574 GKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPI-CRSP 632
             G IPHQL  L  LA+F+V+YNNLSG IP+ K QF TF+ENSY GN  LCG P    C + 
Sbjct:   781 GSIPHQLTNLTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETK 839

Query:   633 TTMSEASIENERDDNLXXXXXXXX--XXXXXYVIVIFGIVTVLYVNSYWRHRWFYFVEMW 690
                 E +   E DD                 YV  + GI+ ++ V+  WR  W   V+ +
Sbjct:   840 KNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAF 899

Query:   691 ITS 693
             I S
Sbjct:   900 IAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 220/653 (33%), Positives = 329/653 (50%)

Query:     1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
             ++ N+L G LP CL ++T LR+LD+SSN+LTG++ SS L  L S+E LSL +N F    S
Sbjct:   251 LSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLFDNDFEGSFS 309

Query:    61 LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
                L N S L +    +   + ++  S +   PKFQL+ ++L S   + V  P FL +Q 
Sbjct:   310 FGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSCNMEKV--PHFLLHQK 366

Query:   121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
             DL  V  S   ++G+ P+WLL NNTKL+ L L N+ L   F++P  +H +L  LDVS N+
Sbjct:   367 DLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIPKSAH-NLLFLDVSAND 424

Query:   181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
             F    P  IG I P L   N S N    ++PSS GNMN +Q +DLS N   G +P     
Sbjct:   425 FNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVN 484

Query:   241 GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN 300
             GC ++  L LS+N L G +F  + N  N+  L ++ N F G+I Q L    +LE L ++N
Sbjct:   485 GCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSN 544

Query:   301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH 360
             N+L+G IP W+G L  L  +++  N L+G IP+   +  SLQ+LD+S N++SG +P    
Sbjct:   545 NNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHD 604

Query:   361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
               +   + L  N L G +      N      LDL  N  +G IP++I+ +  +S L+L  
Sbjct:   605 SRNGVVLLLQDNKLSGTIPDTLLANVE---ILDLRNNRFSGKIPEFIN-IQNISILLLRG 660

Query:   421 NNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSI 480
             NN  G++P                   +G IP C  NT         +S D  F I F  
Sbjct:   661 NNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFG-KECTSYDYDFGISFPS 719

Query:   481 KGHQGHVEKKIQEFFEFTTKNIAYIFQGKV-LSLLSGLDLSC---NKL---IGHIPPQV- 532
                 G     + + F  + KN    F+  + L  LS +D       K+     H      
Sbjct:   720 DVFNGF---SLHQDFS-SNKNGGIYFKSLLTLDPLS-MDYKAATQTKIEFATKHRYDAYM 774

Query:   533 -GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV 591
              GNL  +  ++LS N L+G IP  F  L ++ +L+LS+N L+G IP  +  ++++  F +
Sbjct:   775 GGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDL 834

Query:   592 AYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENER 644
             ++N L G IP    +  + +      N  L G+ +P  R   T    S    R
Sbjct:   835 SFNRLQGRIPSQLTELTSLSVFKVSHNN-LSGV-IPQGRQFNTFDAESYFGNR 885

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.5e-61, P = 4.5e-61
 Identities = 199/647 (30%), Positives = 291/647 (44%)

Query:     4 NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIPISL 61
             N L G +P CL ++  L++   + N LTGSI  S +  L ++ +L LS N     IP   
Sbjct:   178 NNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLDLSGNQLTGKIPRDF 236

Query:    62 EPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD 121
               L N   L+      N +   I       +    L  L L  +   G   P  L     
Sbjct:   237 GNLLN---LQSLVLTENLLEGDIPAEIGNCS---SLVQLELYDNQLTG-KIPAELGNLVQ 289

Query:   122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNF 181
             L+ +   + ++    P+ L    T+L  L L  + L GP    I     L +L + +NNF
Sbjct:   290 LQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNF 348

Query:   182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
              G  P  I + L  L    +  N + G +P+  G +  L+ L   +N LTG IP  ++  
Sbjct:   349 TGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-N 406

Query:   242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
             C  L+ L LS+N + G +  R F  +NL ++ +  NHF GEIP  +  CS+LE L + +N
Sbjct:   407 CTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query:   302 SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHP 361
             +L+G +   +G L  L  + +  N L GPIP E  +L  L IL +  N  +G +P     
Sbjct:   466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN 525

Query:   362 LSITQ-VHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
             L++ Q + +  N L G +     F+   L  LDLS N  +G IP     L  L++L L  
Sbjct:   526 LTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQG 584

Query:   421 NNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIP-PCFDNTKLHESYNNSSSPDEQFKILFS 479
             N   G +P                    G IP     + K  + Y N S+      +  +
Sbjct:   585 NKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNN----LLTGT 640

Query:   480 IKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG------LDLSCNKLIGHIPPQV- 532
             I    G +E  +QE     + N+   F G +   L        LD S N L GHIP +V 
Sbjct:   641 IPKELGKLEM-VQEID--LSNNL---FSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF 694

Query:   533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA 592
               +  I +LNLS N+ +G IP +F N+  + SLDLS N L G+IP  L  L  L    +A
Sbjct:   695 QGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLA 754

Query:   593 YNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEAS 639
              NNL G +PE    F   N +   GNT LCG   P+   P T+ + S
Sbjct:   755 SNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL--KPCTIKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 1.8e-60, P = 1.8e-60
 Identities = 199/646 (30%), Positives = 302/646 (46%)

Query:    16 NMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFN-HSRLKIFY 74
             ++ SL +L +S N    + +S  L  LT +  L LS++   I    E  F+ +S L    
Sbjct:   101 SLDSLSVLKLSENFFVLNSTSLLLLPLT-LTHLELSSSGL-IGTLPENFFSKYSNLISIT 158

Query:    75 ADNNPINAKITKSHTLTTPKFQLASLSLSSSYG--DGVTFPKFLYYQHDLEDVHFSRIQM 132
                N    K+     L++ K Q   LS ++  G   G+T P  L     +  + FS   +
Sbjct:   159 LSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIP--LSSCVSMTYLDFSGNSI 216

Query:   133 NGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
             +G   + L+ N T L+ L+L  ++  G         + L+ LD+S+N   G IP EIGD 
Sbjct:   217 SGYISDSLI-NCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDT 275

Query:   193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
                L +  +S N   G IP S  + + LQ LDLSNN ++G  P  +     +L+ L LSN
Sbjct:   276 CRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSN 335

Query:   253 NSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSK-CSSLEGLYLNNNSLSGKIPRWL 311
             N + G   +      +LR      N F G IP  L    +SLE L L +N ++G+IP  +
Sbjct:   336 NLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAI 395

Query:   312 GNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLS 370
                + L  I +  N+L G IP E  +L  L+      NNI+G +P     L ++  + L+
Sbjct:   396 SQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILN 455

Query:   371 KNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVX 430
              N L G++    FFNCS++  +  + N L G +P     LS+L+ L LGNNN  GE+P  
Sbjct:   456 NNQLTGEIPP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPE 514

Query:   431 XXXXXXXXXXXXXXXXXHGLIPPCFDNTKLHESYNNSSSPDEQ-F--KILFSIKGHQGHV 487
                               G IPP        ++ +   S +   F   +  S KG  G V
Sbjct:   515 LGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLV 574

Query:   488 E------KKIQEFFEFTTKNIAYIFQGKVLSLLSG------LDLSCNKLIGHIPPQVGNL 535
             E      +++ +     + +   ++ G +LSL +       LDLS N+L G IP ++G +
Sbjct:   575 EFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEM 634

Query:   536 TRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
               +Q L LSHN L+G IP T   LK +   D S N+L G+IP     L  L    ++ N 
Sbjct:   635 IALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNE 694

Query:   596 LSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIE 641
             L+G IP+ + Q +T     Y  N  LCG+PLP C++      A  E
Sbjct:   695 LTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTE 739

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 196/658 (29%), Positives = 319/658 (48%)

Query:     1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH--IP 58
             M  N   GS+P  L ++T+L+ LD+S N + G++S   +  L +++EL L  N     IP
Sbjct:   137 MCCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGD-IKELKNLQELILDENLIGGAIP 195

Query:    59 ISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYY 118
               +  L     L +     N  N+ I  S +  T   +L ++ L +++      P  +  
Sbjct:   196 SEIGSLVELLTLTL---RQNMFNSSIPSSVSRLT---KLKTIDLQNNFLSS-KIPDDIGN 248

Query:   119 QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDS-LAGPFRLP-IHSHRHLRLLDV 176
               +L  +  S  +++G  P+  + N   L  L L N++ L+G      +   + L++L +
Sbjct:   249 LVNLSTLSLSMNKLSGGIPS-SIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRL 307

Query:   177 SNNN-FQGHIPVEIGDILPRLISFNISMNA--LDGSIPSSFGNMNLLQILDLSNNQLTGE 233
               NN  Q +     G + P+    ++S+ +  L+G+IP    N   L  LDLS N+L G 
Sbjct:   308 EGNNKLQWN---NNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGR 364

Query:   234 IPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSL 293
              P+ LA   + +  + LS+N L G +    F   +L +L L  N+F G+IP ++ + S +
Sbjct:   365 FPKWLAD--LKIRNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE-SQV 421

Query:   294 EGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISG 353
               L L+ N+ SG +P+ +  + +L  + + KN L G  P  F     L+ LDIS N  SG
Sbjct:   422 MVLMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDISSNEFSG 480

Query:   354 SLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQ- 412
              +P+ F   S + + +S+N   G+     F N S L+ LDL  N ++G++   I  LS  
Sbjct:   481 DVPAYFGG-STSMLLMSQNNFSGEFPQN-FRNLSYLIRLDLHDNKISGTVASLISQLSSS 538

Query:   413 LSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDN-TKLHESYNNSSSPD 471
             +  L L NN+L+G +P                    G +P    N T + +S   S+   
Sbjct:   539 VEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTI 598

Query:   472 EQ-FKILFSIKGHQGHVEKKIQEFFEFTT--KNIAYIFQGKVLSLLSGLDLSCNKLIGHI 528
                F     I   +  +E + ++ F      KN   +   +   L + LDLS NKL G I
Sbjct:   599 RPYFSSYTDIPNIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEI 658

Query:   529 PPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAV 588
             P  +GNL  ++ LNLS+N  +GLIP +F +L+++ESLDLS+N L G+IP  L +L EL  
Sbjct:   659 PTSLGNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNT 718

Query:   589 FSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDD 646
               +  N L G IPE        N N Y  N+ +CG+ + +   PT   + + E E +D
Sbjct:   719 LDLRNNKLKGRIPESPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEED 776

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01330121 hypothetical protein (1016 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	693
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (569), Expect = 5e-62
 Identities = 173/543 (31%), Positives = 262/543 (48%), Gaps = 51/543 (9%)

Query: 122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNF 181
           ++ ++ S  Q++G  P+ +   ++ LR L+L N++  G   +P  S  +L  LD+SNN  
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IPRGSIPNLETLDLSNNML 152

Query: 182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
            G IP +IG     L   ++  N L G IP+S  N+  L+ L L++NQL G+IP  L   
Sbjct: 153 SGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ- 210

Query: 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
             +L+++ L  N+L G +      L +L  L L  N+  G IP SL    +L+ L+L  N
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 302 SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHP 361
            LSG IP  + +L  LI + +  N L G IP     L +L+IL +  NN +G +P     
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 362 LSITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
           L   QV  L  N   G++        ++L  LDLS N L G IP+ +     L  LIL +
Sbjct: 331 LPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389

Query: 421 NNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSI 480
           N+LEGE+P  L     L+ + L +N+  G +P  F  TKL   Y           +  S 
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYF----------LDISN 437

Query: 481 KGHQGHVEKKIQEFFEFTTKNIAY-IFQGKVLSL-----LSGLDLSCNKLIGHIPPQVGN 534
              QG +  +  +       ++A   F G +        L  LDLS N+  G +P ++G+
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497

Query: 535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594
           L+ +  L LS N L+G IP   S+ K++ SLDLS+N+L+G+IP    E+  L+   ++ N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 595 NLSGEIPE-----------------------WKAQFATFNENSYEGNTFLCG----LPLP 627
            LSGEIP+                           F   N ++  GN  LCG      LP
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLP 617

Query: 628 ICR 630
            C+
Sbjct: 618 PCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  209 bits (533), Expect = 3e-57
 Identities = 166/506 (32%), Positives = 251/506 (49%), Gaps = 64/506 (12%)

Query: 126 HFSRIQMNGEFPNW---LLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQ 182
           + S    + +   W      N++++  + L   +++G     I    +++ +++SNN   
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 183 GHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGC 242
           G IP +I      L   N+S N   GSIP   G++  L+ LDLSNN L+GEIP  +    
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-- 162

Query: 243 VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS 302
                            FS      +L+ L L GN  VG+IP SL+  +SLE L L +N 
Sbjct: 163 -----------------FS------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL 362
           L G+IPR LG +  L  I +  N+L G IP E   L SL  LD+  NN++G +PS    L
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 363 SITQ-VHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN 421
              Q + L +N L G +   + F+   L++LDLS N L+G IP+ +  L  L  L L +N
Sbjct: 260 KNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 422 NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNNSS--------S 469
           N  G++PV L  L +LQ+L L +N   G IP         T L  S NN +        S
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 470 PDEQFK-ILFSIKGHQGHVEKKIQEFFEFTTKNIAYI------FQGKV------LSLLSG 516
               FK ILFS    +G + K +        +++  +      F G++      L L+  
Sbjct: 379 SGNLFKLILFS-NSLEGEIPKSLG-----ACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           LD+S N L G I  +  ++  +Q L+L+ N   G +P +F + K++E+LDLS N+ +G +
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAV 491

Query: 577 PHQLVELKELAVFSVAYNNLSGEIPE 602
           P +L  L EL    ++ N LSGEIP+
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (453), Expect = 8e-47
 Identities = 169/569 (29%), Positives = 241/569 (42%), Gaps = 139/569 (24%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIP 58
           +++N L G +P  + + +SL++LD+  N L G I +S L  LTS+E L+L++N     IP
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIP 205

Query: 59  ISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASL------------SLSSSY 106
             L  + +   LK  Y   N ++ +I            L SL             + SS 
Sbjct: 206 RELGQMKS---LKWIYLGYNNLSGEIPYEIG------GLTSLNHLDLVYNNLTGPIPSSL 256

Query: 107 GDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIH 166
           G+         YQ+ L          +G  P  +  +  KL  L L ++SL+G     + 
Sbjct: 257 GNLKNLQYLFLYQNKL----------SGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVI 305

Query: 167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLS 226
             ++L +L + +NNF G IPV +   LPRL    +  N   G IP + G  N L +LDLS
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQS 286
            N LTGEIPE L                  G++F           L L  N   GEIP+S
Sbjct: 365 TNNLTGEIPEGLCS---------------SGNLFK----------LILFSNSLEGEIPKS 399

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
           L  C SL  + L +NS SG++P     L  +  + +  N+L+G I      + SLQ+L +
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406
           + N   G LP                           F    L  LDLS N  +G++P  
Sbjct: 460 ARNKFFGGLPD-------------------------SFGSKRLENLDLSRNQFSGAVPRK 494

Query: 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN 466
           +  LS+L  L L  N L GE+P +L    +L  LDLS+N L G IP  F           
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF----------- 543

Query: 467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG 526
           S  P                                       VLS L   DLS N+L G
Sbjct: 544 SEMP---------------------------------------VLSQL---DLSQNQLSG 561

Query: 527 HIPPQVGNLTRIQTLNLSHNNLTGLIPST 555
            IP  +GN+  +  +N+SHN+L G +PST
Sbjct: 562 EIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (330), Expect = 2e-31
 Identities = 120/371 (32%), Positives = 186/371 (50%), Gaps = 14/371 (3%)

Query: 4   NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HIPISL 61
           N L G +P  L N+ +L+ L +  N+L+G I  S +F L  +  L LS+N     IP   
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIP--- 301

Query: 62  EPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD 121
           E +     L+I +  +N    KI  + T + P+ Q+  L  S+ +   +  PK L   ++
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQL-WSNKFSGEI--PKNLGKHNN 357

Query: 122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNF 181
           L  +  S   + GE P  L  ++  L +L L ++SL G     + + R LR + + +N+F
Sbjct: 358 LTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
            G +P E    LP +   +IS N L G I S   +M  LQ+L L+ N+  G +P+  + G
Sbjct: 417 SGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFG 473

Query: 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
              LE L LS N   G +  +  +L  L  L+L  N   GEIP  LS C  L  L L++N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 302 SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHP 361
            LSG+IP     +  L  + + +N L G IP    ++ SL  ++IS N++ GSLPS    
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Query: 362 LSITQVHLSKN 372
           L+I    ++ N
Sbjct: 594 LAINASAVAGN 604

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 9e-19
 Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 30/201 (14%)

Query: 411 SQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSP 470
           S++  + L   N+ G++   +  L  +Q ++LSNN L G IP         + +  SSS 
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP--------DDIFTTSSS- 119

Query: 471 DEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP 530
                                  +   +  N         +  L  LDLS N L G IP 
Sbjct: 120 ---------------------LRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN 158

Query: 531 QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS 590
            +G+ + ++ L+L  N L G IP++ +NL  +E L L+ N+L G+IP +L ++K L    
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 591 VAYNNLSGEIPEWKAQFATFN 611
           + YNNLSGEIP       + N
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 8/122 (6%)

Query: 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
            + GL L    L G IP  +  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 573 NGKIPHQLVELKELAVFSVAYNNLSGEIPEWKA----QFATFNENSYEGNTFLCGLP-LP 627
           NG IP  L +L  L + ++  N+LSG +P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 628 IC 629
            C
Sbjct: 536 AC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 150 LSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGS 209
           L L N  L G     I   RHL+ +++S N+ +G+IP  +G I   L   ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 210 IPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
           IP S G +  L+IL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 8e-11
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE 233
           L + N   +G IP +I   L  L S N+S N++ G+IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 234 IPEHLAMGCVNLEFLALSNNSLKG 257
           IPE L     +L  L L+ NSL G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 24/108 (22%)

Query: 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC 386
           L G IP +   L  LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGL 434
           +SL  LDLSYN  NGSIP+ +  L+ L  L L  N+L G VP  L G 
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 5e-09
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
           L L+     G IP  +SK   L+ + L+ NS+ G IP  LG++T L  + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 332 PVEFCHLYSLQILDISDNNISGSLPS 357
           P     L SL+IL+++ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 59/148 (39%)

Query: 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN 466
           IDGL       L N  L G +P  +  L  LQ ++LS N++ G IPP   +         
Sbjct: 420 IDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------- 464

Query: 467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG 526
                                                       ++ L  LDLS N   G
Sbjct: 465 --------------------------------------------ITSLEVLDLSYNSFNG 480

Query: 527 HIPPQVGNLTRIQTLNLSHNNLTGLIPS 554
            IP  +G LT ++ LNL+ N+L+G +P+
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
           LDLS N+L   IP      L  ++ L+LS NNLT + P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI 451
           L L    L G IP+ I  L  L  + L  N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 452 P 452
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 29/60 (48%)

Query: 388 SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNL 447
           +L +LDLS N L         GL  L  L L  NNL    P    GL  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL 596
            +++L+LS+N LT +    F  L  ++ LDLS N L    P     L  L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 367 VHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
           + LS N L   +  G F    +L  LDLS N L    P+   GL  L  L L  NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNN 53
           ++ N +RG++P  L ++TSL +LD+S N   GSI  S L  LTS+  L+L+ N
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 60/256 (23%), Positives = 93/256 (36%), Gaps = 74/256 (28%)

Query: 220 LQILDLSNNQLTGEIPE--HLAMG----CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQ 273
           L+ L LS N+ TG IP      +        L+ L LS+N+L                  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL-----------------G 94

Query: 274 LEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN-LTWLIH----IIMPKNHLE 328
            +G   +    +SL + SSL+ L LNNN L  +  R L   L  L      +++ +N LE
Sbjct: 95  PDGCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150

Query: 329 G----PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFF 384
           G     +         L+ L++++N I  +         I    L++ +           
Sbjct: 151 GASCEALAKALRANRDLKELNLANNGIGDAG--------IR--ALAEGLKANC------- 193

Query: 385 NCSSLVTLDLSYNLLN--------GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC---- 432
              +L  LDL+ N L          ++         L  L LG+NNL       L     
Sbjct: 194 ---NLEVLDLNNNGLTDEGASALAETLASLK----SLEVLNLGDNNLTDAGAAALASALL 246

Query: 433 -GLNQLQLLDLSNNNL 447
                L  L LS N++
Sbjct: 247 SPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 14/199 (7%)

Query: 252 NNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 311
            +SL G     N  L+ L  L L  N     I   L + ++L  L L+NN+++  IP  +
Sbjct: 80  ISSLDGSENLLN--LLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLI 135

Query: 312 GNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSK 371
           G L   +  +   ++    +P    +L +L+ LD+S N++S       +  ++  + LS 
Sbjct: 136 GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195

Query: 372 N---MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP 428
           N    L  +++       S+L  LDLS N +   +   +  L  LS L L NN LE ++P
Sbjct: 196 NKISDLPPEIE-----LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248

Query: 429 VQLCGLNQLQLLDLSNNNL 447
             +  L+ L+ LDLSNN +
Sbjct: 249 ESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ 229
           +L+ LD+SNN     IP      LP L   ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 230 L 230
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 71/304 (23%), Positives = 97/304 (31%), Gaps = 80/304 (26%)

Query: 341 LQILDISDNNISGS----LPSCFHP-LSITQVHLSKNMLHGQLKG-----GTFFNCSSLV 390
           LQ+L +  N +       L S   P  S+ ++ LS N      +G             L 
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84

Query: 391 TLDLSYN-LLNGSIPDWIDGL--SQLSHLILGNNNLEGEVPVQL--CGLNQLQL----LD 441
            LDLS N L           L  S L  L L NNN  G+  ++L   GL  L      L 
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRSSSLQELKL-NNNGLGDRGLRLLAKGLKDLPPALEKLV 143

Query: 442 LSNNNLHGLIPPCFD-------NTKLHESY--NNSSSPDEQFKILFSIKGHQGHVEKKIQ 492
           L  N L G    C         N  L E    NN               G  G       
Sbjct: 144 LGRNRLEG--ASCEALAKALRANRDLKELNLANNGI-------------GDAG------- 181

Query: 493 EFFEFTTKNIAYIFQG-KVLSLLSGLDLSCNKL-------IGHIPPQVGNLTRIQTLNLS 544
                    I  + +G K    L  LDL+ N L       +      + +L   + LNL 
Sbjct: 182 ---------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL---EVLNLG 229

Query: 545 HNNLTGLIPSTFSN-----LKQIESLDLSYNKLNGKIPHQLVEL----KELAVFSVAYNN 595
            NNLT    +  ++        + +L LS N +       L E+    + L    +  N 
Sbjct: 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289

Query: 596 LSGE 599
              E
Sbjct: 290 FGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
           I  + L    L G +          L +++LS N + G+IP  +  ++ L  L L  N+ 
Sbjct: 420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 424 EGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN 466
            G +P  L  L  L++L+L+ N+L G +P       LH +  N
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEG 276
           L+ LDLSNN+LT  IP+    G  NL+ L LS N+L       FS    L +LR L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 277 NHF 279
           N+ 
Sbjct: 58  NNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	693
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.5
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.02
PLN03150	623	hypothetical protein; Provisional	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
KOG4341	483	consensus F-box protein containing LRR [General fu	98.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.13
KOG4341	483	consensus F-box protein containing LRR [General fu	98.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.49
smart00370	26	LRR Leucine-rich repeats, outliers.	93.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.57
smart00370	26	LRR Leucine-rich repeats, outliers.	92.57
KOG4308	478	consensus LRR-containing protein [Function unknown	92.32
KOG4308	478	consensus LRR-containing protein [Function unknown	91.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.58
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	89.26
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.7
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3e-62  Score=571.94  Aligned_cols=543  Identities=33%  Similarity=0.494  Sum_probs=499.0

Q ss_pred             CCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcc
Q 037315           17 MTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ   96 (693)
Q Consensus        17 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~   96 (693)
                      ..+++.|||++|.+++.++. .+..+++|++|+|++|++.+.+|...+..+++|++|++++|.+++..+..     ...+
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-----~l~~  141 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-----SIPN  141 (968)
T ss_pred             CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-----ccCC
Confidence            35799999999999877776 89999999999999999988888666668999999999999988765542     2348


Q ss_pred             ccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEc
Q 037315           97 LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDV  176 (693)
Q Consensus        97 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  176 (693)
                      |++|++ +.+.+.+..|..++.+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..+..++.+++|++|++
T Consensus       142 L~~L~L-s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        142 LETLDL-SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCEEEC-cCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            999999 8888888899999999999999999999998888876 79999999999999999888999999999999999


Q ss_pred             cCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccc
Q 037315          177 SNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK  256 (693)
Q Consensus       177 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  256 (693)
                      ++|.+++.+|..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.
T Consensus       220 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        220 GYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS  297 (968)
T ss_pred             cCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeec
Confidence            999999889988876 89999999999999999999999999999999999999888888776 5999999999999999


Q ss_pred             cccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCcccccc
Q 037315          257 GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFC  336 (693)
Q Consensus       257 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  336 (693)
                      +..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+.
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  377 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC  377 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence            98899899999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCCCCCEEECcCCcCCCCCCCCCC-CCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCE
Q 037315          337 HLYSLQILDISDNNISGSLPSCFH-PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSH  415 (693)
Q Consensus       337 ~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  415 (693)
                      .+++|+.|++++|.+.+..|..+. +++|+.|++++|++.+.++. .+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus       378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  456 (968)
T PLN00113        378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM  456 (968)
T ss_pred             CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence            999999999999999988887654 78999999999999888876 7899999999999999999999988999999999


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccccccee
Q 037315          416 LILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF  495 (693)
Q Consensus       416 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (693)
                      |++++|++.+..|..+ ..++|+.|++++|++.+..|..+..                                      
T Consensus       457 L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~--------------------------------------  497 (968)
T PLN00113        457 LSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS--------------------------------------  497 (968)
T ss_pred             EECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh--------------------------------------
Confidence            9999999998888765 4689999999999999888877655                                      


Q ss_pred             eeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccccc
Q 037315          496 EFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK  575 (693)
Q Consensus       496 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  575 (693)
                                     +++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|.++++|+.|||++|++++.
T Consensus       498 ---------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  562 (968)
T PLN00113        498 ---------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE  562 (968)
T ss_pred             ---------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence                           55899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315          576 IPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       576 ~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      +|..+..+++|+++++++|++.+.+|.. +++..+....+.|||.+|+.+
T Consensus       563 ~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        563 IPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999985 788888999999999999753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.5e-58  Score=534.86  Aligned_cols=532  Identities=32%  Similarity=0.440  Sum_probs=482.8

Q ss_pred             CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315            1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI   80 (693)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (693)
                      |+.|++++.+|.+|..+++|++|||++|++++.+|...+..+++|++|+|++|.+++.+|.   ..+++|++|++++|.+
T Consensus        76 L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~  152 (968)
T PLN00113         76 LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNML  152 (968)
T ss_pred             ecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcc
Confidence            5788999999999999999999999999999889985566999999999999999887773   4689999999999999


Q ss_pred             ccccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc
Q 037315           81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP  160 (693)
Q Consensus        81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  160 (693)
                      .+..+..+.   ...+|++|++ +.+.+.+.+|..++.+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+.
T Consensus       153 ~~~~p~~~~---~l~~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        153 SGEIPNDIG---SFSSLKVLDL-GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             cccCChHHh---cCCCCCEEEC-ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCc
Confidence            877665543   2349999999 8888888899999999999999999999999888876 8999999999999999998


Q ss_pred             CCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhh
Q 037315          161 FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM  240 (693)
Q Consensus       161 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  240 (693)
                      .+..++.+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+. 
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-  305 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-  305 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-
Confidence            9999999999999999999999888888776 89999999999999999999999999999999999999988887665 


Q ss_pred             CCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEE
Q 037315          241 GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI  320 (693)
Q Consensus       241 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  320 (693)
                      .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  385 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL  385 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence            69999999999999999899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCcccEEEccCcccccccCcccccCCCCCcEEeCcCccc
Q 037315          321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL  399 (693)
Q Consensus       321 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i  399 (693)
                      ++++|.+.+..|..+..+++|+.|++++|++.+..|..+. .+.|+.+++++|.+.+.++. .+..+++|+.|++++|.+
T Consensus       386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS-RKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh-hhccCCCCcEEECcCcee
Confidence            9999999999999999999999999999999988887664 78999999999999888776 677899999999999999


Q ss_pred             CCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhh
Q 037315          400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFS  479 (693)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  479 (693)
                      .+..|..+ ..++|+.|++++|++++..|..+.++++|+.|++++|++.+.+|..+..                      
T Consensus       465 ~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~----------------------  521 (968)
T PLN00113        465 FGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS----------------------  521 (968)
T ss_pred             eeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC----------------------
Confidence            98888765 4689999999999999999999999999999999999999998887765                      


Q ss_pred             hcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCC
Q 037315          480 IKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNL  559 (693)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  559 (693)
                                                     +++|++|++++|.+++.+|..+..+++|+.|+|++|++++.+|..+.++
T Consensus       522 -------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        522 -------------------------------CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             -------------------------------ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence                                           5589999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315          560 KQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       560 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  598 (693)
                      ++|+.|++++|++.+.+|.. .....+....+.+|+..|
T Consensus       571 ~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc  608 (968)
T PLN00113        571 ESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLC  608 (968)
T ss_pred             cccCEEeccCCcceeeCCCc-chhcccChhhhcCCcccc
Confidence            99999999999999988864 333445555667777544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-45  Score=357.89  Aligned_cols=401  Identities=26%  Similarity=0.311  Sum_probs=288.8

Q ss_pred             CCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEc
Q 037315          171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL  250 (693)
Q Consensus       171 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  250 (693)
                      -+.||+++|++. .+....+..+|+|+++++.+|.++ .+|.......+|+.|+|.+|.|. .+.....+.++.|+.|||
T Consensus        80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            344555555555 333333444555555555555555 44443333444555555555555 343333334555555555


Q ss_pred             cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccC
Q 037315          251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP  330 (693)
Q Consensus       251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  330 (693)
                      |.|.|+.+....|..-.++++|+|++|.|+......|..+.+|..|.|+.|.++...+..|.++++|+.|++..|++...
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            55555555444555445555555555555554445555555555555555555544444555555555555555555433


Q ss_pred             ccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCC
Q 037315          331 IPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGL  410 (693)
Q Consensus       331 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l  410 (693)
                      .--.|.++++|+.|.+..|.+.                        .+.+++|..+.++++|+|+.|++...-.+|+.++
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhccccccc
Confidence            2334555555555555555543                        4555689999999999999999998888899999


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccc
Q 037315          411 SQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKK  490 (693)
Q Consensus       411 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (693)
                      +.|+.|+++.|.|..+.+++...+++|++|+|+.|+++...+..|..                                 
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~---------------------------------  339 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV---------------------------------  339 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH---------------------------------
Confidence            99999999999999888888899999999999999999888877755                                 


Q ss_pred             ccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc---ccccCCCCCCEEeC
Q 037315          491 IQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP---STFSNLKQIESLDL  567 (693)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L  567 (693)
                                          +..|++|+|++|.+..+....|..+++|++|||++|.++..+.   ..|.++++|+.|++
T Consensus       340 --------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  340 --------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             --------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence                                5589999999999998888889999999999999999987764   46889999999999


Q ss_pred             CCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCCC-----------------CCC
Q 037315          568 SYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP-----------------ICR  630 (693)
Q Consensus       568 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~-----------------~c~  630 (693)
                      .+|++..+...+|.+++.|+.|||.+|.+...-|+.|.++ .++++.+..-.++|+|.+.                 .|.
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~Ca  478 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCA  478 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeecc
Confidence            9999998888899999999999999999999889888887 8889989889999999874                 399


Q ss_pred             CCCCCCccccccccCCCCCCcc
Q 037315          631 SPTTMSEASIENERDDNLIDTD  652 (693)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~  652 (693)
                      .|+...+.++...+...+.+.+
T Consensus       479 yPe~Lad~~i~svd~~~lvC~D  500 (873)
T KOG4194|consen  479 YPEPLADQSIVSVDTANLVCDD  500 (873)
T ss_pred             CCcccccceeEeechhhceecC
Confidence            9999988887777666654433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-41  Score=334.41  Aligned_cols=373  Identities=23%  Similarity=0.255  Sum_probs=242.7

Q ss_pred             CCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEc
Q 037315          146 KLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDL  225 (693)
Q Consensus       146 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  225 (693)
                      .-++|++++|.+.......+.++++|+++.+.+|.++ .+|..... ..+++.|+|.+|.|+.+..+.++.++.|++|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            3466888888777766667778888888888888887 67765443 557888888888888777777888888888888


Q ss_pred             ccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccc
Q 037315          226 SNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG  305 (693)
Q Consensus       226 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  305 (693)
                      +.|.|+ ++|...|..-.++++|+|++|+|+......|.++.+|..|.|++|+++...+..|..+++|+.|+|..|.|..
T Consensus       157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            888887 7776666555678888888888888777888888888888888888886666677778888888888888764


Q ss_pred             cCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCC-CCCCcccEEEccCcccccccCccccc
Q 037315          306 KIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSC-FHPLSITQVHLSKNMLHGQLKGGTFF  384 (693)
Q Consensus       306 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~  384 (693)
                      .--..|.++++|+.|.+..|.+.....++|..+.++++|+++.|++.....+. |.+.+|+.|+++.|.+...-.. .+.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-~Ws  314 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-SWS  314 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-hhh
Confidence            44566788888888888888888777777888888888888888876443321 2233444444444444222222 444


Q ss_pred             CCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccccc
Q 037315          385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESY  464 (693)
Q Consensus       385 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~  464 (693)
                      .+++|++|+|++|.|+...++.|..+..|++|+|+.|+++..-..+|.++++|++|||++|.++..+.+.          
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa----------  384 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA----------  384 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc----------
Confidence            4555555555555555444455555555555555555555444444555555555555555444332221          


Q ss_pred             CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCC
Q 037315          465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS  544 (693)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  544 (693)
                                                                                      ...|.++++|+.|++.
T Consensus       385 ----------------------------------------------------------------a~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  385 ----------------------------------------------------------------AVAFNGLPSLRKLRLT  400 (873)
T ss_pred             ----------------------------------------------------------------hhhhccchhhhheeec
Confidence                                                                            1235555566666666


Q ss_pred             CccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCc
Q 037315          545 HNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS  597 (693)
Q Consensus       545 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  597 (693)
                      +|++..+...+|.++.+||+|||.+|.|..+-|++|..+ .|+.|-+..-.+.
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl  452 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL  452 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence            666655555556666666666666666655555555555 5555554443333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.3e-40  Score=311.16  Aligned_cols=476  Identities=26%  Similarity=0.370  Sum_probs=258.7

Q ss_pred             CCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccc
Q 037315           18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQL   97 (693)
Q Consensus        18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L   97 (693)
                      .-|+.|++++|.+. .+.+ .+.++..|.+|++++|++. ..| .+++.+..++.++.+.|.+..               
T Consensus        45 v~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls~---------------  105 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLSE---------------  105 (565)
T ss_pred             cchhhhhhccCchh-hccH-hhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHhh---------------
Confidence            34555666666665 4444 4556666666666666654 334 245556666666665555431               


Q ss_pred             cEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEcc
Q 037315           98 ASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVS  177 (693)
Q Consensus        98 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  177 (693)
                                    +|..++...++++++.++|.+. ++++.+ +.+..++.++..+|++. ..|..+..+.++..+++.
T Consensus       106 --------------lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~  168 (565)
T KOG0472|consen  106 --------------LPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLE  168 (565)
T ss_pred             --------------ccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcc
Confidence                          2333333444444444444443 222232 34445555555555544 233444445555555555


Q ss_pred             CCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccccc
Q 037315          178 NNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG  257 (693)
Q Consensus       178 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  257 (693)
                      +|+++ ..|..... ++.|++|+...|.++ .+|..++.+.+|..|++.+|++. .+|+  |.+|..|++++++.|++.-
T Consensus       169 ~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~  242 (565)
T KOG0472|consen  169 GNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEM  242 (565)
T ss_pred             ccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHh
Confidence            55555 34443333 445555555555544 44445555555555555555555 4442  2235555555555555554


Q ss_pred             ccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccC
Q 037315          258 HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCH  337 (693)
Q Consensus       258 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  337 (693)
                      ...+...+++++..||+++|++. ..|+.+..+.+|+.||+++|.++ ..|..++++ +|+.|.+.+|.+..+-.+.+..
T Consensus       243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~  319 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISK  319 (565)
T ss_pred             hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence            43333445555555555555555 44555555555555555555555 345555555 5555555555433211100000


Q ss_pred             CC--CCCEE-------ECcCC---------cCCCCCCCCCCCCcccEEEccCcccccccCcccccCCC--CCcEEeCcCc
Q 037315          338 LY--SLQIL-------DISDN---------NISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCS--SLVTLDLSYN  397 (693)
Q Consensus       338 l~--~L~~L-------~l~~n---------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~L~~n  397 (693)
                      -+  -|++|       .++..         ...+..+......+.+.|++++-+++ .+|...|..-.  -....+++.|
T Consensus       320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskN  398 (565)
T KOG0472|consen  320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKN  398 (565)
T ss_pred             cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccc
Confidence            00  00000       00000         01112222233445566666666653 44443443322  2567777777


Q ss_pred             ccCCCcchhhhCCCCCCE-EEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhH
Q 037315          398 LLNGSIPDWIDGLSQLSH-LILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKI  476 (693)
Q Consensus       398 ~i~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  476 (693)
                      ++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++|.+...+ ..+..                   
T Consensus       399 qL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP-~e~~~-------------------  456 (565)
T KOG0472|consen  399 QLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLP-EEMGS-------------------  456 (565)
T ss_pred             hHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcc-hhhhh-------------------
Confidence            776 55665555554433 344444444 66777777777777777777665432 22222                   


Q ss_pred             hhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccc
Q 037315          477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF  556 (693)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  556 (693)
                                                        +..|+.||+++|++. ..|..+..+..++.+-.++|++..+.|+.+
T Consensus       457 ----------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  457 ----------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL  501 (565)
T ss_pred             ----------------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence                                              335778888888776 677777777777777777788888877888


Q ss_pred             cCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCc
Q 037315          557 SNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS  597 (693)
Q Consensus       557 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  597 (693)
                      .++.+|.+|||.+|.+. .+|..++++++|++|++++|++.
T Consensus       502 ~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            88888888888888887 66777888888888888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4e-40  Score=311.37  Aligned_cols=479  Identities=24%  Similarity=0.322  Sum_probs=372.3

Q ss_pred             CCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCC
Q 037315           41 YLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH  120 (693)
Q Consensus        41 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  120 (693)
                      .-.-|+.|++++|.+....  ..+.++..|.+|+++.|.+.                             ..|..++.+.
T Consensus        43 ~qv~l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~-----------------------------~lp~aig~l~   91 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLS-----------------------------QLPAAIGELE   91 (565)
T ss_pred             hhcchhhhhhccCchhhcc--HhhhcccceeEEEeccchhh-----------------------------hCCHHHHHHH
Confidence            3466999999999986433  47889999999999888764                             2456677788


Q ss_pred             CCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEE
Q 037315          121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN  200 (693)
Q Consensus       121 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  200 (693)
                      .++.++.+.|++. .+|+.+ +.+.++++++++.|.+. ..+..++.+..++.++..+|+++ ..|.+++. +.++..++
T Consensus        92 ~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~  166 (565)
T KOG0472|consen   92 ALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLD  166 (565)
T ss_pred             HHHHhhcccchHh-hccHHH-hhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhh
Confidence            8889999999886 677776 78899999999999987 45677888899999999999998 88988887 67999999


Q ss_pred             ccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCcccc
Q 037315          201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFV  280 (693)
Q Consensus       201 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  280 (693)
                      +.+|.+....|..+ +++.|++||...|-+. .+|+.+. ++.+|.-|++.+|++... | .|.++..|++|++..|.+.
T Consensus       167 ~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  167 LEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELG-GLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             ccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhc-chhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHH
Confidence            99999996555544 4999999999999988 9999887 599999999999999874 3 8899999999999999998


Q ss_pred             ccCCc-CCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCC
Q 037315          281 GEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCF  359 (693)
Q Consensus       281 ~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  359 (693)
                       .+|. ...+++++..||+.+|++. ..|..+.-+++|.+||+++|.++ ..|..++++ .|+.|-+.+|.+...-....
T Consensus       242 -~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  242 -MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             -hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence             5554 4558999999999999998 78888999999999999999998 567789999 99999999998753221111


Q ss_pred             CCC---cccEEE-------ccCcccc----cccCcc---cccCCCCCcEEeCcCcccCCCcchhhhCC--CCCCEEEccC
Q 037315          360 HPL---SITQVH-------LSKNMLH----GQLKGG---TFFNCSSLVTLDLSYNLLNGSIPDWIDGL--SQLSHLILGN  420 (693)
Q Consensus       360 ~~~---~L~~L~-------l~~n~~~----~~~~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~  420 (693)
                      ...   -|++|.       ++...-.    ...+..   ......+.+.|++++-+++....+.|..-  .-.+..++++
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence            110   011110       0000000    000111   22234567788888888774333333322  2267788888


Q ss_pred             CcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecc
Q 037315          421 NNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK  500 (693)
Q Consensus       421 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (693)
                      |++. ..|..+..+..+.+.-+..|++.+.+|..+..                                           
T Consensus       398 NqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~-------------------------------------------  433 (565)
T KOG0472|consen  398 NQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQ-------------------------------------------  433 (565)
T ss_pred             chHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHh-------------------------------------------
Confidence            8887 56766666665554333333333344433322                                           


Q ss_pred             cceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCccc
Q 037315          501 NIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL  580 (693)
Q Consensus       501 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  580 (693)
                                +++|..|+|++|.+. .+|..++.+..||.|++++|++.. .|..+..+..+|.+-.++|++....|..+
T Consensus       434 ----------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  434 ----------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGL  501 (565)
T ss_pred             ----------hhcceeeecccchhh-hcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHh
Confidence                      668999999999988 789999999999999999999984 58888888899999999999998888889


Q ss_pred             ccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCC
Q 037315          581 VELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFL  621 (693)
Q Consensus       581 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~  621 (693)
                      .++.+|.+||+.+|.+. .+|..++.++++.++.+.||||-
T Consensus       502 ~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999999999998 56666899999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-34  Score=300.73  Aligned_cols=497  Identities=25%  Similarity=0.282  Sum_probs=323.8

Q ss_pred             CcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcccccccccc
Q 037315            9 SLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSH   88 (693)
Q Consensus         9 ~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~   88 (693)
                      .+|..+-.-..++.|+++.|.+. ..|-..+.+.-+|+.||+++|++. ..| ..+..+++|+.|+++.|.+....    
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~~vp----   84 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIRSVP----   84 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHhhCc----
Confidence            34555555555777888887765 544435566666888888888775 455 35667778888888887775432    


Q ss_pred             CCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCC
Q 037315           89 TLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSH  168 (693)
Q Consensus        89 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  168 (693)
                      .......+|+++.| .++. ....|..+..+.+|+.|+++.|.+. .+|..+ ..++.++.+..++|....    .++..
T Consensus        85 ~s~~~~~~l~~lnL-~~n~-l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~----~lg~~  156 (1081)
T KOG0618|consen   85 SSCSNMRNLQYLNL-KNNR-LQSLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQ----RLGQT  156 (1081)
T ss_pred             hhhhhhhcchhhee-ccch-hhcCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhhh----hhccc
Confidence            11223336777777 3333 3346778888888888888888875 556554 567777888888772221    12222


Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEE
Q 037315          169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL  248 (693)
Q Consensus       169 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  248 (693)
                       ..+++++..|.+.+.++.++.. +.+  .|+|++|.+. .  ..+..+++|+.|....|++. .+..    .-++|+.|
T Consensus       157 -~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L  224 (1081)
T KOG0618|consen  157 -SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLS-ELEI----SGPSLTAL  224 (1081)
T ss_pred             -cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh-h--hhhhhccchhhhhhhhcccc-eEEe----cCcchhee
Confidence             2778888888887777766654 333  5888888876 1  24667788888888888776 3322    25778888


Q ss_pred             EccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccc
Q 037315          249 ALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE  328 (693)
Q Consensus       249 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  328 (693)
                      +.++|.+....+.  ....+|+++++++|+++ .+|+++..+.+|+.++..+|.++ ..|..+...++|+.+.+..|.+.
T Consensus       225 ~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~  300 (1081)
T KOG0618|consen  225 YADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE  300 (1081)
T ss_pred             eeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh
Confidence            8888888743322  23467888888888888 55688888888888888888885 67777778888888888888887


Q ss_pred             cCccccccCCCCCCEEECcCCcCCCCCCCCCC--CCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchh
Q 037315          329 GPIPVEFCHLYSLQILDISDNNISGSLPSCFH--PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW  406 (693)
Q Consensus       329 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  406 (693)
                       .+|........|++|++..|++....+..+.  ..++..++.+.|++...... .=...+.|+.|.+.+|.+++.....
T Consensus       301 -yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-~e~~~~~Lq~LylanN~Ltd~c~p~  378 (1081)
T KOG0618|consen  301 -YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY-EENNHAALQELYLANNHLTDSCFPV  378 (1081)
T ss_pred             -hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc-cchhhHHHHHHHHhcCcccccchhh
Confidence             4455566788888888888888743332222  23466666666666333221 2233456777777777777666666


Q ss_pred             hhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCc
Q 037315          407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH  486 (693)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (693)
                      +.++.+|+.|+|++|++.......+.++..|+.|++|||+++.++ ++...                             
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~-----------------------------  428 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVAN-----------------------------  428 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHh-----------------------------
Confidence            777777777777777777444455666777777777777765433 33222                             


Q ss_pred             ccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEe
Q 037315          487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD  566 (693)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  566 (693)
                                              +..|++|...+|++. ..| .+..++.|+.+|+|.|+++...-..-..-++|++||
T Consensus       429 ------------------------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd  482 (1081)
T KOG0618|consen  429 ------------------------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD  482 (1081)
T ss_pred             ------------------------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence                                    335666777677665 444 667777777777777776654222211226777777


Q ss_pred             CCCccccccCCcccccCCCCCEEecCCC
Q 037315          567 LSYNKLNGKIPHQLVELKELAVFSVAYN  594 (693)
Q Consensus       567 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  594 (693)
                      +++|.-.......|..++++...++.-|
T Consensus       483 lSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  483 LSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccCCcccccchhhhHHhhhhhheecccC
Confidence            7777644344555555666666665555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.3e-33  Score=281.29  Aligned_cols=369  Identities=27%  Similarity=0.328  Sum_probs=251.9

Q ss_pred             CCCcEEEccCCccc-ccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315          194 PRLISFNISMNALD-GSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL  272 (693)
Q Consensus       194 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  272 (693)
                      |-.+-.++++|.++ +..|.....+++++.|.|...++. .+|+.+.. +.+|++|.+++|++.. ....+..++.|+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLIS-VHGELSDLPRLRSV   83 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHh-hhhhhccchhhHHH
Confidence            34455555666555 455666666667777777766666 66666653 6777777777776665 34556666777777


Q ss_pred             eccCccccc-cCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcC
Q 037315          273 QLEGNHFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNI  351 (693)
Q Consensus       273 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  351 (693)
                      .+++|++.. -+|..+..+..|..|||++|++. ..|..+..-.++..|++++|+|..+....|.+++.|-.||+++|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            777776543 24555666777777777777776 5566666667777777777777655445566777777777777777


Q ss_pred             CCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccC-CCcchhhhCCCCCCEEEccCCcccccCCcc
Q 037315          352 SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN-GSIPDWIDGLSQLSHLILGNNNLEGEVPVQ  430 (693)
Q Consensus       352 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  430 (693)
                      ....|....+..|+.|.+++|.+.-.-- ..+..+++|+.|.+++.+-+ .-+|..+.++.+|+.++++.|.+. ..|+.
T Consensus       163 e~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 EMLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             hhcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            6555555556677777777776632211 13445667777777776543 236677777888888888888887 67777


Q ss_pred             cCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccc
Q 037315          431 LCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKV  510 (693)
Q Consensus       431 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (693)
                      +-.+++|+.|+|++|+|+......                                                      ..
T Consensus       241 ly~l~~LrrLNLS~N~iteL~~~~------------------------------------------------------~~  266 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELNMTE------------------------------------------------------GE  266 (1255)
T ss_pred             HhhhhhhheeccCcCceeeeeccH------------------------------------------------------HH
Confidence            778888888888888776432110                                                      00


Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCcc-CcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF  589 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  589 (693)
                      -.+|+.|++|.|+++ ..|..+..++.|+.|.+.+|+++-. +|.+++.+.+|+++..++|.+. ..|+++..+.+|+.|
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            235777888888877 6777788888888888888877532 4777888888888888888776 777888888888888


Q ss_pred             ecCCCcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315          590 SVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       590 ~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      .|+.|++. ++|+.+..++.+..+++..||.+...|
T Consensus       345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            88888876 567777777777778888888776544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-33  Score=294.62  Aligned_cols=487  Identities=25%  Similarity=0.277  Sum_probs=359.4

Q ss_pred             EEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccccEEe
Q 037315           22 ILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLS  101 (693)
Q Consensus        22 ~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  101 (693)
                      .+|++...+. .||. .+..-..++.|+++.|.+. ..|.+.+.+..+|+.|++++|.+.... ..   .....+|+.|+
T Consensus         2 ~vd~s~~~l~-~ip~-~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp-~~---it~l~~L~~ln   74 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPE-QILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFP-IQ---ITLLSHLRQLN   74 (1081)
T ss_pred             CcccccccCc-ccch-hhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCC-ch---hhhHHHHhhcc
Confidence            4788888887 8887 4544455999999999875 445666777777999999999875322 11   11122777777


Q ss_pred             cCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcC
Q 037315          102 LSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNF  181 (693)
Q Consensus       102 L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  181 (693)
                      + +.+.+. ..|.....+.+|+.+.|..|.+. ..|..+ ..+.+|+.|+++.|.+. ..|..+..+..++.++.++|..
T Consensus        75 ~-s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~  149 (1081)
T KOG0618|consen   75 L-SRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEK  149 (1081)
T ss_pred             c-chhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-HhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchh
Confidence            7 333333 34566677777777777776654 456554 66777777777777776 4555666677777777777721


Q ss_pred             cccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCc
Q 037315          182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFS  261 (693)
Q Consensus       182 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  261 (693)
                      .    ..+++  ..++.+++..|.+.+.++..+..+..  .|+|.+|.+. .+..   ..+.+|+.+....|++..... 
T Consensus       150 ~----~~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl---s~~~~l~~l~c~rn~ls~l~~-  216 (1081)
T KOG0618|consen  150 I----QRLGQ--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL---SNLANLEVLHCERNQLSELEI-  216 (1081)
T ss_pred             h----hhhcc--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh---hhccchhhhhhhhcccceEEe-
Confidence            1    11222  13677777777777777777776666  7889888876 3222   247888888888888775432 


Q ss_pred             cCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCC
Q 037315          262 RNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL  341 (693)
Q Consensus       262 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  341 (693)
                         .-++|+.|+.++|.++...+.  ..-.+|+.++++.|.++ ..|+|+..+.+|+.+....|++. ..|..+...++|
T Consensus       217 ---~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L  289 (1081)
T KOG0618|consen  217 ---SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSL  289 (1081)
T ss_pred             ---cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhH
Confidence               347899999999988854433  22358999999999998 56699999999999999999995 667777888999


Q ss_pred             CEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCC-CcEEeCcCcccCCCcchhhhCCCCCCEEEccC
Q 037315          342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSS-LVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN  420 (693)
Q Consensus       342 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  420 (693)
                      +.|++..|.+....+..-...+|+.|++..|.+. .+|...+.-... |..|+.+.|++.....-.=..++.|+.|++.+
T Consensus       290 ~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  290 VSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            9999999999866665556888999999999984 455445544444 77788888887633211122367899999999


Q ss_pred             CcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecc
Q 037315          421 NNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK  500 (693)
Q Consensus       421 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (693)
                      |.+++.....+.+.++|+.|+|++|++...+...+.+                                           
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k-------------------------------------------  405 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK-------------------------------------------  405 (1081)
T ss_pred             CcccccchhhhccccceeeeeecccccccCCHHHHhc-------------------------------------------
Confidence            9999888788999999999999999998666655544                                           


Q ss_pred             cceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCccc
Q 037315          501 NIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL  580 (693)
Q Consensus       501 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  580 (693)
                                ++.|++|+||+|+++ .+|..+..++.|++|...+|++... | .+..+++|+.+|+|.|.++...-..-
T Consensus       406 ----------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  406 ----------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ----------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhh
Confidence                      557999999999998 6678999999999999999999865 5 78899999999999999985433222


Q ss_pred             ccCCCCCEEecCCCcCc
Q 037315          581 VELKELAVFSVAYNNLS  597 (693)
Q Consensus       581 ~~l~~L~~L~l~~N~l~  597 (693)
                      ..-++|++||+++|.-.
T Consensus       473 ~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             CCCcccceeeccCCccc
Confidence            23389999999999854

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.3e-33  Score=278.32  Aligned_cols=367  Identities=28%  Similarity=0.343  Sum_probs=212.7

Q ss_pred             ccEEecCCCCCCC-CcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEE
Q 037315           97 LASLSLSSSYGDG-VTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLD  175 (693)
Q Consensus        97 L~~L~L~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  175 (693)
                      .+-+++ +.+..+ +.+|.....++.++.|.|....+. .+|+.+ +.+.+|++|.+++|++.. +...++.++.|+.++
T Consensus         9 VrGvDf-sgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    9 VRGVDF-SGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI   84 (1255)
T ss_pred             eecccc-cCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh
Confidence            444556 444444 457777777777777777666654 456654 667777777777776653 334566667777777


Q ss_pred             ccCCcCcc-cCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccc
Q 037315          176 VSNNNFQG-HIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS  254 (693)
Q Consensus       176 l~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  254 (693)
                      +..|++.. -+|..++. +..|+.|+|++|.++ ..|..+..-+++-+|+|++|+|. .||..++.+++.|-.||||+|+
T Consensus        85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            77766532 35666665 566677777777666 45666666666667777777666 6666666666666666666666


Q ss_pred             cccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc-ccCCccccCCCCCcEEEccCCccccCccc
Q 037315          255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIPRWLGNLTWLIHIIMPKNHLEGPIPV  333 (693)
Q Consensus       255 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  333 (693)
                      +... |..+..+.+|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|+
T Consensus       162 Le~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            6653 344455666666666666554222223344455555555554332 234455555555555555555554 4455


Q ss_pred             cccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCC
Q 037315          334 EFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQL  413 (693)
Q Consensus       334 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  413 (693)
                      .+..+++|+.|++++|+++..                        .. ......+|++|++|.|+++ ..|+++..+++|
T Consensus       240 cly~l~~LrrLNLS~N~iteL------------------------~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL  293 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITEL------------------------NM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKL  293 (1255)
T ss_pred             HHhhhhhhheeccCcCceeee------------------------ec-cHHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence            555555555555555554411                        10 2223345566666666655 455555555555


Q ss_pred             CEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccccc
Q 037315          414 SHLILGNNNLE-GEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQ  492 (693)
Q Consensus       414 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (693)
                      +.|.+.+|+++ +-+|.+++.+.                                                         
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~---------------------------------------------------------  316 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLI---------------------------------------------------------  316 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhh---------------------------------------------------------
Confidence            55555555554 12333344433                                                         


Q ss_pred             ceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccc
Q 037315          493 EFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL  572 (693)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  572 (693)
                                          +|+++..++|.+. ..|+.+..+..|+.|.|++|++..+ |+++.-++.|+.||+..|+-
T Consensus       317 --------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  317 --------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             --------------------hhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcC
Confidence                                4555555555554 5666666777777777777776644 66666677777777777765


Q ss_pred             cccCC
Q 037315          573 NGKIP  577 (693)
Q Consensus       573 ~~~~~  577 (693)
                      .-.+|
T Consensus       375 LVMPP  379 (1255)
T KOG0444|consen  375 LVMPP  379 (1255)
T ss_pred             ccCCC
Confidence            53433

>PLN03210 Resistant to P

Probab=99.92  E-value=2.4e-23  Score=243.84  Aligned_cols=339  Identities=21%  Similarity=0.233  Sum_probs=198.9

Q ss_pred             CCCCCCCCEEEccCCc------CcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHH
Q 037315          165 IHSHRHLRLLDVSNNN------FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL  238 (693)
Q Consensus       165 l~~~~~L~~L~l~~n~------~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  238 (693)
                      +..+++|+.|.+..+.      +...+|..+....++|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~  630 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV  630 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence            4445555555554332      112334443332234666666655554 344444 3455666666666555 444443


Q ss_pred             hhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCc
Q 037315          239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLI  318 (693)
Q Consensus       239 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  318 (693)
                      . .+++|+.|+++++......| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+
T Consensus       631 ~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        631 H-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             c-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            2 35566666665544333233 24455666666666655444555556666666666666654333444433 456666


Q ss_pred             EEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccc------ccCcccccCCCCCcEE
Q 037315          319 HIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHG------QLKGGTFFNCSSLVTL  392 (693)
Q Consensus       319 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L  392 (693)
                      .|++++|......|.   ..++|+.|++++|.+. .+|......+|+.|.+.++....      .++...+..+++|+.|
T Consensus       708 ~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        708 RLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence            666666654433332   1345666666666654 34444445556666555432210      0111123345688888


Q ss_pred             eCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCch
Q 037315          393 DLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDE  472 (693)
Q Consensus       393 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~  472 (693)
                      ++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|......|..                  
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------  844 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------  844 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc------------------
Confidence            888887766788888888888888888876555666655 6888888888887654333321                  


Q ss_pred             hhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccC
Q 037315          473 QFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLI  552 (693)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  552 (693)
                                                            ..+|+.|+|++|.+. .+|..+..+++|+.|++++|+-...+
T Consensus       845 --------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        845 --------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             --------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence                                                  236888888888887 56778888888888888875433334


Q ss_pred             cccccCCCCCCEEeCCCcc
Q 037315          553 PSTFSNLKQIESLDLSYNK  571 (693)
Q Consensus       553 ~~~~~~l~~L~~L~Ls~N~  571 (693)
                      |.....+++|+.|++++|.
T Consensus       886 ~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcccccccCCCeeecCCCc
Confidence            6667778888888888875

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-27  Score=225.13  Aligned_cols=134  Identities=22%  Similarity=0.242  Sum_probs=113.4

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEccc-CccccccchHHhhCCCCCc
Q 037315          168 HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSN-NQLTGEIPEHLAMGCVNLE  246 (693)
Q Consensus       168 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~  246 (693)
                      .+....++|..|.|+ .+|...|+.+++|+.|+|++|.|+.+.|++|..++.|..|-+.+ |+|+ .+|...|.++..++
T Consensus        66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence            356778899999998 88888888888999999999999988899999998887777666 8887 88888888899999


Q ss_pred             EEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcc
Q 037315          247 FLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL  303 (693)
Q Consensus       247 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  303 (693)
                      .|.+.-|++..+....|..+++|..|.+.+|.+..+....|..+..++.+.+..|.+
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            999988888888888888899999999999988855555788888888888888763

>PLN03210 Resistant to P

Probab=99.91  E-value=6e-23  Score=240.56  Aligned_cols=341  Identities=21%  Similarity=0.253  Sum_probs=236.7

Q ss_pred             hhhhhcCCCCcEEEccCCc------ccccCCccCCCCC-CCCEEEcccCccccccchHHhhCCCCCcEEEcccccccccc
Q 037315          187 VEIGDILPRLISFNISMNA------LDGSIPSSFGNMN-LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHM  259 (693)
Q Consensus       187 ~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  259 (693)
                      ...+..+++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..+  ...+|++|++++|.+.. .
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-L  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-c
Confidence            3344557777777775543      2234555666554 5788888877776 677655  26778888888877765 3


Q ss_pred             CccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCC
Q 037315          260 FSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLY  339 (693)
Q Consensus       260 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  339 (693)
                      +..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+ +++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            45566778888888877654445553 6677788888888776656677777788888888888776555555544 677


Q ss_pred             CCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccC-------CCcchhhhCCCC
Q 037315          340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN-------GSIPDWIDGLSQ  412 (693)
Q Consensus       340 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~-------~~~~~~~~~l~~  412 (693)
                      +|+.|++++|.....+|..  ..+|+.|++++|.+. .+|. . ..+++|+.|++.++...       ...+..+...++
T Consensus       705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-c-ccccccccccccccchhhccccccccchhhhhcccc
Confidence            8888888887655444432  356778888887763 4443 2 24677777777764321       111222333567


Q ss_pred             CCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccccc
Q 037315          413 LSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQ  492 (693)
Q Consensus       413 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (693)
                      |+.|++++|.....+|..++++++|+.|++++|...+.+|...                                     
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------  822 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------  822 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence            8888888887777788888888888888888876544444332                                     


Q ss_pred             ceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccc
Q 037315          493 EFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL  572 (693)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  572 (693)
                                       .+++|+.|++++|......|..   .++|++|+|++|.++.+ |..+..+++|+.|++++|+-
T Consensus       823 -----------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        823 -----------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             -----------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCC
Confidence                             1567999999998655455433   46899999999999854 77889999999999998655


Q ss_pred             cccCCcccccCCCCCEEecCCCcC
Q 037315          573 NGKIPHQLVELKELAVFSVAYNNL  596 (693)
Q Consensus       573 ~~~~~~~l~~l~~L~~L~l~~N~l  596 (693)
                      ...+|..+..+++|+.+++++|.-
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCcc
Confidence            556777888899999999999863

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=2.4e-26  Score=218.14  Aligned_cols=309  Identities=23%  Similarity=0.247  Sum_probs=162.4

Q ss_pred             EEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccC-C
Q 037315          223 LDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN-N  301 (693)
Q Consensus       223 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n  301 (693)
                      .+-++-.++ ++|..+   -+.-.+++|..|+|+.+++..|..+++|+.|||++|.|+.+.|++|.+++++.+|.+.+ |
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            344444444 566554   24556677777777777777777777777777777777777777777777766665555 7


Q ss_pred             cccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcc
Q 037315          302 SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGG  381 (693)
Q Consensus       302 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  381 (693)
                      +|++.....|+++..++.|.+.-|++.-...+.|..+++|..|.+.+|.+..                        ++..
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~------------------------i~~~  182 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS------------------------ICKG  182 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh------------------------hccc
Confidence            7776656667777777777777777766666667777777777777776642                        2222


Q ss_pred             cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCc--
Q 037315          382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK--  459 (693)
Q Consensus       382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--  459 (693)
                      .|..+..++.+.+..|.+..     ..+++.+... +      ...|..+++.....-..+.+.++..+.+..|....  
T Consensus       183 tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~-~------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es  250 (498)
T KOG4237|consen  183 TFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD-L------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES  250 (498)
T ss_pred             cccchhccchHhhhcCcccc-----ccccchhhhH-H------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence            44444555555555444210     0011111000 0      01111122222222222333333222222221100  


Q ss_pred             cccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCC
Q 037315          460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQ  539 (693)
Q Consensus       460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  539 (693)
                      +.........+....+.                           ..|  +.+++|+.|+|++|+++++.+.+|.++..++
T Consensus       251 l~s~~~~~d~~d~~cP~---------------------------~cf--~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  251 LPSRLSSEDFPDSICPA---------------------------KCF--KKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             HHHhhccccCcCCcChH---------------------------HHH--hhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            00000000000000000                           000  1155666666666666666666666666666


Q ss_pred             eeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315          540 TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI  600 (693)
Q Consensus       540 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  600 (693)
                      +|.|..|++..+....|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++.|.+
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            6666666666555566666666666666666666666666666666666666666665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.3e-20  Score=202.52  Aligned_cols=112  Identities=27%  Similarity=0.400  Sum_probs=51.0

Q ss_pred             CEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccC
Q 037315          221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN  300 (693)
Q Consensus       221 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  300 (693)
                      ..|+++++.++ .+|..+.   ++|+.|++++|+++.+. .   .+++|++|++++|+++. +|..   .++|+.|++++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            34555555554 4444332   24555555555554421 1   13455555555555552 2321   23455555555


Q ss_pred             CcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315          301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       301 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      |.+. .+|..   .+.|+.|++++|++... |.   ..++|+.|++++|++.
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLA  315 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccc
Confidence            5554 22221   13445555555555422 22   2345556666665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=9.9e-20  Score=197.60  Aligned_cols=263  Identities=27%  Similarity=0.313  Sum_probs=135.2

Q ss_pred             CcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEecc
Q 037315          196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLE  275 (693)
Q Consensus       196 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  275 (693)
                      -..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|.    ..++|++|++++|+++.+ |.   ..++|+.|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence            445555555555 3444443  24555566655555 4443    135566666666665543 21   12456666666


Q ss_pred             CccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCC
Q 037315          276 GNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSL  355 (693)
Q Consensus       276 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  355 (693)
                      +|.+. .+|..   .++|+.|++++|+++. +|.   ..++|+.|++++|++.+. |..   ..+|+.|++++|.+.+ +
T Consensus       271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-c
Confidence            66655 23321   2345666666666652 332   235566666666666542 221   2345666666666652 2


Q ss_pred             CCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCC
Q 037315          356 PSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLN  435 (693)
Q Consensus       356 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  435 (693)
                      |..  +                         .+|+.|++++|+++. +|..   .++|+.|++++|+++. +|..   ..
T Consensus       338 P~l--p-------------------------~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~  382 (788)
T PRK15387        338 PTL--P-------------------------SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS  382 (788)
T ss_pred             ccc--c-------------------------cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence            210  1                         244555555555542 2221   2345555555555552 3322   23


Q ss_pred             CCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcc
Q 037315          436 QLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS  515 (693)
Q Consensus       436 ~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  515 (693)
                      +|+.|++++|++.+.++ .                                                        +++|+
T Consensus       383 ~L~~LdLs~N~Lt~LP~-l--------------------------------------------------------~s~L~  405 (788)
T PRK15387        383 GLKELIVSGNRLTSLPV-L--------------------------------------------------------PSELK  405 (788)
T ss_pred             ccceEEecCCcccCCCC-c--------------------------------------------------------ccCCC
Confidence            45666666666553221 0                                                        12456


Q ss_pred             eEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCccc
Q 037315          516 GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL  580 (693)
Q Consensus       516 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  580 (693)
                      .|++++|++.+ +|..   ..+|+.|++++|+++.+ |..+.++++|+.|+|++|++++..+..+
T Consensus       406 ~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        406 ELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             EEEccCCcCCC-CCcc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            66666666653 3432   23556666777776643 5566666777777777777766555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3e-18  Score=187.61  Aligned_cols=55  Identities=22%  Similarity=0.373  Sum_probs=23.6

Q ss_pred             CCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315          292 SLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       292 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      +|+.|++++|.+. .+|..+.  ++|+.|++++|.+.. +|..+.  ++|+.|++++|++.
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc
Confidence            3444455544444 2333221  234444554444442 232221  24555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=4.8e-18  Score=185.96  Aligned_cols=117  Identities=26%  Similarity=0.305  Sum_probs=52.4

Q ss_pred             CCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEc
Q 037315          171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL  250 (693)
Q Consensus       171 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  250 (693)
                      ...|++++++++ .+|..+.   +.++.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|..+.   .+|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            345555555554 4444332   24555555555555 2333222  34555555555554 4444332   24555555


Q ss_pred             cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315          251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS  304 (693)
Q Consensus       251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  304 (693)
                      ++|.+..+ |..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|.++
T Consensus       249 s~N~L~~L-P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        249 SINRITEL-PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             cCCccCcC-ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            55554432 22221  24455555555444 2333222  24455555554444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.9e-19  Score=183.96  Aligned_cols=58  Identities=26%  Similarity=0.163  Sum_probs=27.4

Q ss_pred             EEEcccCccccccchHHhhCCCCCcEEEccccccccc----cCccCCCCCCCCeEeccCccc
Q 037315          222 ILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGH----MFSRNFNLINLRWLQLEGNHF  279 (693)
Q Consensus       222 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  279 (693)
                      .|+|..+.+.+.--...+..+..|++|+++++.++..    .+..+...+++++++++++.+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            3455555554322223333455566666666665431    122233444455555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=7.4e-19  Score=179.63  Aligned_cols=58  Identities=24%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             EEEccCCccc-ccCCccCCCCCCCCEEEcccCccccc----cchHHhhCCCCCcEEEccccccc
Q 037315          198 SFNISMNALD-GSIPSSFGNMNLLQILDLSNNQLTGE----IPEHLAMGCVNLEFLALSNNSLK  256 (693)
Q Consensus       198 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~  256 (693)
                      .|+|..+.++ ......+..+..|+.|+++++.+++.    ++..+ ...+++++++++++.+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccC
Confidence            3556666554 22333455566788888888877432    22222 24566888888777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.8e-18  Score=144.65  Aligned_cols=90  Identities=33%  Similarity=0.455  Sum_probs=53.5

Q ss_pred             CCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCC
Q 037315          355 LPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGL  434 (693)
Q Consensus       355 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  434 (693)
                      ++..|....++.|.+++|++....|  .++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|.+|+.+
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vpp--nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPP--NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCC--cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            4445555566666666666643333  4556666666666666665 45555666666666666666665 556666666


Q ss_pred             CCCCEEEccCCcCc
Q 037315          435 NQLQLLDLSNNNLH  448 (693)
Q Consensus       435 ~~L~~L~l~~n~~~  448 (693)
                      |.|+.||+.+|++.
T Consensus       102 p~levldltynnl~  115 (264)
T KOG0617|consen  102 PALEVLDLTYNNLN  115 (264)
T ss_pred             chhhhhhccccccc
Confidence            66666666665554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=5.7e-18  Score=142.78  Aligned_cols=182  Identities=29%  Similarity=0.465  Sum_probs=153.3

Q ss_pred             cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccc
Q 037315          382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH  461 (693)
Q Consensus       382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~  461 (693)
                      .+..+.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ ..|..++.++.|+.|+++-|++. ..|..|+.    
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs----  100 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS----  100 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC----
Confidence            4556788999999999999 66777999999999999999999 78888999999999999998875 55666665    


Q ss_pred             cccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc-cCchhhccCCCCCe
Q 037315          462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG-HIPPQVGNLTRIQT  540 (693)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~  540 (693)
                                                                       ++.|+.|||++|++.+ ..|+.|..++.|+.
T Consensus       101 -------------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen  101 -------------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             -------------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHH
Confidence                                                             6689999999999864 57888999999999


Q ss_pred             eeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcC---CcccccC
Q 037315          541 LNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATF---NENSYEG  617 (693)
Q Consensus       541 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l---~~~~~~~  617 (693)
                      |+|++|.+. +.|..++++++|+.|.+.+|.+. .+|..++.+..|+.|.+.+|+++-..|+ ++++.-.   .....+.
T Consensus       132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~  208 (264)
T KOG0617|consen  132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEE  208 (264)
T ss_pred             HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhh
Confidence            999999998 55778999999999999999998 7899999999999999999999976665 3444322   2234567


Q ss_pred             ccCCC
Q 037315          618 NTFLC  622 (693)
Q Consensus       618 n~~~c  622 (693)
                      |||.-
T Consensus       209 NPwv~  213 (264)
T KOG0617|consen  209 NPWVN  213 (264)
T ss_pred             CCCCC
Confidence            77764

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=6.6e-14  Score=153.33  Aligned_cols=118  Identities=35%  Similarity=0.635  Sum_probs=107.0

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCccc-cCcCCcccccCccCCCCCCC-CCCC
Q 037315          593 YNNLSGEIPEWKAQ-FATFNENSYEGNTFLCGLPL-PICR  630 (693)
Q Consensus       593 ~N~l~~~~p~~~~~-~~~l~~~~~~~n~~~c~~~~-~~c~  630 (693)
                      +|+++|.+|..+.. +.......+.+|+.+|++|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999987654 24556778999999998764 3564

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=2.1e-12  Score=119.32  Aligned_cols=86  Identities=31%  Similarity=0.322  Sum_probs=55.6

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccC-CcccccCCCCCEE
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI-PHQLVELKELAVF  589 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L  589 (693)
                      +++|+.||||+|.++. +.++-..+-+.+.|.|++|.|.++  .+++.+-+|..||+++|+|.... -..++++|-|+++
T Consensus       328 L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            4566666666666653 233334566677777777777655  56666777777777777776332 2356677777777


Q ss_pred             ecCCCcCccc
Q 037315          590 SVAYNNLSGE  599 (693)
Q Consensus       590 ~l~~N~l~~~  599 (693)
                      .+.+||+.+.
T Consensus       405 ~L~~NPl~~~  414 (490)
T KOG1259|consen  405 RLTGNPLAGS  414 (490)
T ss_pred             hhcCCCcccc
Confidence            7777777743

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3.4e-12  Score=124.30  Aligned_cols=165  Identities=19%  Similarity=0.221  Sum_probs=103.4

Q ss_pred             cCCCCCCEEECCCCCCCCcCCc-cccCCCCCCCEEECCCCcCcCcCCcccc-cCCCCCcEEEccCCccccccccccCCCC
Q 037315           15 ANMTSLRILDVSSNQLTGSISS-SPLFYLTSIEELSLSNNHFHIPISLEPL-FNHSRLKIFYADNNPINAKITKSHTLTT   92 (693)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~~l~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~   92 (693)
                      +++..|+...|.++.+. ..+. .....|++++.||||.|-+....+...+ ..+++|+.|+++.|++........    
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----  192 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence            46788899999988876 4331 2456789999999999977655444433 458999999999988753322111    


Q ss_pred             CCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCC
Q 037315           93 PKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLR  172 (693)
Q Consensus        93 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  172 (693)
                            +                 ..++.|+.|.+++|.++-.-..+....+|+|+.|++..|............++.|+
T Consensus       193 ------~-----------------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  193 ------T-----------------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             ------h-----------------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence                  1                 13356677777777665433344456677888888877753333333444566777


Q ss_pred             EEEccCCcCcccCCh-hhhhcCCCCcEEEccCCcccc
Q 037315          173 LLDVSNNNFQGHIPV-EIGDILPRLISFNISMNALDG  208 (693)
Q Consensus       173 ~L~l~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~i~~  208 (693)
                      .|||++|.+. ..+. ..-..+|.|+.|+++.|.+..
T Consensus       250 ~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  250 ELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             hccccCCccc-ccccccccccccchhhhhccccCcch
Confidence            7777777665 2221 111226677777777766653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=8.8e-12  Score=115.32  Aligned_cols=133  Identities=33%  Similarity=0.372  Sum_probs=108.9

Q ss_pred             cCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccc
Q 037315          384 FNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES  463 (693)
Q Consensus       384 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~  463 (693)
                      .....|+++|+++|.|+ .+.+.+.-.|.++.|+++.|.++..  +.+..+++|+.||+++|.++.+..-   ..     
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw---h~-----  349 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW---HL-----  349 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh---Hh-----
Confidence            34578999999999998 5667788889999999999999843  3388899999999999988644221   11     


Q ss_pred             cCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeC
Q 037315          464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNL  543 (693)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  543 (693)
                                                                    .+.+.+.|.|+.|.+...  ..++.+-+|..||+
T Consensus       350 ----------------------------------------------KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  350 ----------------------------------------------KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDL  381 (490)
T ss_pred             ----------------------------------------------hhcCEeeeehhhhhHhhh--hhhHhhhhheeccc
Confidence                                                          155789999999998744  56788899999999


Q ss_pred             CCccCCccCc-ccccCCCCCCEEeCCCcccccc
Q 037315          544 SHNNLTGLIP-STFSNLKQIESLDLSYNKLNGK  575 (693)
Q Consensus       544 s~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~  575 (693)
                      ++|+|..... ..+++++.|+.+.|.+|++.+.
T Consensus       382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             cccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            9999987643 7899999999999999999843

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=7.6e-11  Score=105.26  Aligned_cols=80  Identities=30%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCC---cccccCCCC
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIP---HQLVELKEL  586 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L  586 (693)
                      ++.|++|++++|.++...+.....+++|++|++++|+|..... ..+..+++|+.|+|.+|++....-   ..+..+|+|
T Consensus        63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L  142 (175)
T PF14580_consen   63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL  142 (175)
T ss_dssp             -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred             hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence            3456666666666654322222356667777777776655422 445566677777777777653211   134456666


Q ss_pred             CEEe
Q 037315          587 AVFS  590 (693)
Q Consensus       587 ~~L~  590 (693)
                      +.||
T Consensus       143 k~LD  146 (175)
T PF14580_consen  143 KVLD  146 (175)
T ss_dssp             SEET
T ss_pred             heeC
Confidence            6665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=7.2e-12  Score=122.09  Aligned_cols=111  Identities=30%  Similarity=0.301  Sum_probs=48.5

Q ss_pred             cCCCCCEEEccCCcccccCC-CCCCCCCCCCEEEccCCcCcccCC-hhhhhcCCCCcEEEccCCcccccCCc-cCCCCCC
Q 037315          143 NNTKLRQLSLVNDSLAGPFR-LPIHSHRHLRLLDVSNNNFQGHIP-VEIGDILPRLISFNISMNALDGSIPS-SFGNMNL  219 (693)
Q Consensus       143 ~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~  219 (693)
                      ++.+|+.+.|.++.+..... .....+++++.||++.|-+....+ ..+.+.+|+|+.|+++.|++.....+ .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34556666666555443221 233445566666666654432111 12334455556666655554311110 0112344


Q ss_pred             CCEEEcccCccccccchHHhhCCCCCcEEEcccc
Q 037315          220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN  253 (693)
Q Consensus       220 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  253 (693)
                      |+.|.++.|+++..--..+...+++|+.|++..|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            5555555555442222222233445555555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.1e-10  Score=122.72  Aligned_cols=198  Identities=36%  Similarity=0.497  Sum_probs=103.2

Q ss_pred             EEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcc
Q 037315          319 HIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL  398 (693)
Q Consensus       319 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  398 (693)
                      .++...+.+.... ..+...+.++.+++.+|.+....+......                        ++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N~  151 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDNK  151 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccch------------------------hhcccccccccc
Confidence            4666666653222 223445667777777777764333222221                        255555555555


Q ss_pred             cCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhh
Q 037315          399 LNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILF  478 (693)
Q Consensus       399 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  478 (693)
                      +. .+|..+..+++|+.|++++|+++ ..+......+.|+.|++++|++..+.+.. .                      
T Consensus       152 i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~----------------------  206 (394)
T COG4886         152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E----------------------  206 (394)
T ss_pred             hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h----------------------
Confidence            55 33344555555666666666555 33333335556666666666555433221 0                      


Q ss_pred             hhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccC
Q 037315          479 SIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSN  558 (693)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  558 (693)
                                                     .+..|++|++++|.+. ..+..+..++++..+.+.+|++... +..++.
T Consensus       207 -------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~  253 (394)
T COG4886         207 -------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGN  253 (394)
T ss_pred             -------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhcc
Confidence                                           0223555666665432 3344455555666666666665543 345555


Q ss_pred             CCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          559 LKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       559 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      +++++.|++++|.++...+  +..+.+++.|++++|.++...|
T Consensus       254 l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         254 LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            5666666666666653333  5555666666666666654444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=7.3e-12  Score=118.76  Aligned_cols=139  Identities=18%  Similarity=0.198  Sum_probs=85.5

Q ss_pred             CCCCCEEeccCCccccc----CCccccCCCCCcEEEccCCccccC----ccccccCCCCCCEEECcCCcCCCCCCCCCCC
Q 037315          290 CSSLEGLYLNNNSLSGK----IPRWLGNLTWLIHIIMPKNHLEGP----IPVEFCHLYSLQILDISDNNISGSLPSCFHP  361 (693)
Q Consensus       290 l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  361 (693)
                      -+.|+++...+|++.+.    +...+...+.|+.+.+..|.|...    ...+|..+++|+.||+.+|.++....     
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs-----  230 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-----  230 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-----
Confidence            35667777777666532    223445566677777777665432    22346677777777777776652211     


Q ss_pred             CcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh-----hCCCCCCEEEccCCccccc----CCcccC
Q 037315          362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-----DGLSQLSHLILGNNNLEGE----VPVQLC  432 (693)
Q Consensus       362 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~  432 (693)
                                     ..-...+..+++|++|++++|.+......+|     ...|+|+.|.+.+|.++..    +...+.
T Consensus       231 ---------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~  295 (382)
T KOG1909|consen  231 ---------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA  295 (382)
T ss_pred             ---------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence                           1111255666788888888887765444333     2367888888888888632    223345


Q ss_pred             CCCCCCEEEccCCcCc
Q 037315          433 GLNQLQLLDLSNNNLH  448 (693)
Q Consensus       433 ~l~~L~~L~l~~n~~~  448 (693)
                      ..|.|..|+|++|.+.
T Consensus       296 ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  296 EKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cchhhHHhcCCccccc
Confidence            5788888888888873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.3e-10  Score=103.87  Aligned_cols=109  Identities=32%  Similarity=0.393  Sum_probs=33.8

Q ss_pred             CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCc
Q 037315          167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLE  246 (693)
Q Consensus       167 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  246 (693)
                      +..++++|++++|.|+ .+. .+...+.+|+.|++++|.|+..  +.+..+++|+.|++++|.++ .+++.+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            3445677777777765 332 3333356777777777777643  24667777888888888777 56554444477777


Q ss_pred             EEEccccccccccC-ccCCCCCCCCeEeccCcccc
Q 037315          247 FLALSNNSLKGHMF-SRNFNLINLRWLQLEGNHFV  280 (693)
Q Consensus       247 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  280 (693)
                      +|++++|+|..... ..+..+++|+.|++.+|.+.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            78777777765321 23445566666666666555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=1.6e-11  Score=116.49  Aligned_cols=175  Identities=21%  Similarity=0.210  Sum_probs=88.7

Q ss_pred             cCCCCCCCEEECCCCcCcCcCC---cccccCCCCCcEEEccCCccccccccccCCCCCCccccEEecCCCCCCCCcCchh
Q 037315           39 LFYLTSIEELSLSNNHFHIPIS---LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKF  115 (693)
Q Consensus        39 ~~~l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  115 (693)
                      +..+..+++++||+|.+.....   ...+.+.++|+..+++.--. +.....+..     .|+            .+...
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ft-GR~~~Ei~e-----~L~------------~l~~a   87 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFT-GRLKDEIPE-----ALK------------MLSKA   87 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhc-CCcHHHHHH-----HHH------------HHHHH
Confidence            4556777778888777632111   12344556666666654211 100000000     000            01233


Q ss_pred             hcCCCCCCEEEccCccccccCch---hhhhcCCCCCEEEccCCcccccC-------------CCCCCCCCCCCEEEccCC
Q 037315          116 LYYQHDLEDVHFSRIQMNGEFPN---WLLENNTKLRQLSLVNDSLAGPF-------------RLPIHSHRHLRLLDVSNN  179 (693)
Q Consensus       116 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l~~n  179 (693)
                      +..+++|++++||+|.+....+.   .+++.+..|++|.|.+|.+.-..             ......-+.|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            44566788888888876543332   33466778888888887664211             111233456777777777


Q ss_pred             cCcccCCh---hhhhcCCCCcEEEccCCccccc----CCccCCCCCCCCEEEcccCccc
Q 037315          180 NFQGHIPV---EIGDILPRLISFNISMNALDGS----IPSSFGNMNLLQILDLSNNQLT  231 (693)
Q Consensus       180 ~~~~~~~~---~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~  231 (693)
                      ++......   ..++..+.|+.+.+..|.|...    ...+|..+++|++|||.+|-++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            66421111   1233345666666666665421    1223455566666666665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=2.7e-10  Score=119.72  Aligned_cols=102  Identities=32%  Similarity=0.435  Sum_probs=54.4

Q ss_pred             EEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCC-CCCEEeccCCcccccCCccccCCCCCcEEEccCC
Q 037315          247 FLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN  325 (693)
Q Consensus       247 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  325 (693)
                      .++.+.+.+... ...+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .++..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            455665555321 122333456666666666666 3343344442 6666666666665 33344555666666666666


Q ss_pred             ccccCccccccCCCCCCEEECcCCcCC
Q 037315          326 HLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       326 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      ++... +......+.|+.|++++|++.
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccc
Confidence            66532 222224555555666655554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=5.2e-12  Score=126.91  Aligned_cols=174  Identities=32%  Similarity=0.448  Sum_probs=134.8

Q ss_pred             CcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037315          362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLD  441 (693)
Q Consensus       362 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  441 (693)
                      ..-...+++.|++ ..+|. .+..+..|+.+.++.|.+. .+|..+.++..|+.|+++.|++. ..|..++.|+ |+.|-
T Consensus        75 tdt~~aDlsrNR~-~elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRF-SELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             cchhhhhcccccc-ccCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            3345567777777 34554 5666777788888888776 67777888888888888888887 5666666664 77788


Q ss_pred             ccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCC
Q 037315          442 LSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC  521 (693)
Q Consensus       442 l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  521 (693)
                      +++|+++..+++ ...                                                     ...|..||.+.
T Consensus       150 ~sNNkl~~lp~~-ig~-----------------------------------------------------~~tl~~ld~s~  175 (722)
T KOG0532|consen  150 VSNNKLTSLPEE-IGL-----------------------------------------------------LPTLAHLDVSK  175 (722)
T ss_pred             EecCccccCCcc-ccc-----------------------------------------------------chhHHHhhhhh
Confidence            888877644332 221                                                     45788999999


Q ss_pred             CcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315          522 NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       522 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  598 (693)
                      |.+. ..|..++++.+|+.|++..|++..++ ..+.. -.|..||+|+|++. .+|-.|..+..|++|-|.+|++..
T Consensus       176 nei~-slpsql~~l~slr~l~vrRn~l~~lp-~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP-EELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhh-hchHHhhhHHHHHHHHHhhhhhhhCC-HHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            9988 67888999999999999999999774 44554 46889999999998 889999999999999999999984

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.02  E-value=3.7e-11  Score=126.25  Aligned_cols=246  Identities=28%  Similarity=0.269  Sum_probs=135.9

Q ss_pred             CCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEEC
Q 037315          267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI  346 (693)
Q Consensus       267 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  346 (693)
                      ..++.+.++.|.+.. .-..+..+++|+.|++.+|.+... ...+..+++|++|++++|.|...  ..+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            333444444444432 112234445555555555555422 11134445555555555555433  22334444555555


Q ss_pred             cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccc
Q 037315          347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEG  425 (693)
Q Consensus       347 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~  425 (693)
                      ++|.+...                        .  .+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+..
T Consensus       148 ~~N~i~~~------------------------~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  148 SGNLISDI------------------------S--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCcchhc------------------------c--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            55555411                        1  33335666666666666654332 1 3556667777777776652


Q ss_pred             cCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceee
Q 037315          426 EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYI  505 (693)
Q Consensus       426 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (693)
                        ...+..+..+..+++..|.++.+.+...                                                  
T Consensus       201 --i~~~~~~~~l~~~~l~~n~i~~~~~l~~--------------------------------------------------  228 (414)
T KOG0531|consen  201 --IEGLDLLKKLVLLSLLDNKISKLEGLNE--------------------------------------------------  228 (414)
T ss_pred             --ccchHHHHHHHHhhcccccceeccCccc--------------------------------------------------
Confidence              2233344444444666666543322110                                                  


Q ss_pred             ecccccc--CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccccc---CCcc-
Q 037315          506 FQGKVLS--LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK---IPHQ-  579 (693)
Q Consensus       506 ~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-  579 (693)
                           +.  .|+.+++++|++.. .+..+..++.+..|++++|++...  ..+...+.+..+....|.+...   .... 
T Consensus       229 -----~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (414)
T KOG0531|consen  229 -----LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI  300 (414)
T ss_pred             -----chhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence                 11  27788888888763 335677788888888888888766  5566777888888888887622   1221 


Q ss_pred             cccCCCCCEEecCCCcCcccCCCC
Q 037315          580 LVELKELAVFSVAYNNLSGEIPEW  603 (693)
Q Consensus       580 l~~l~~L~~L~l~~N~l~~~~p~~  603 (693)
                      ....+.++...+.+|+.....+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~  324 (414)
T KOG0531|consen  301 TSAAPTLVTLTLELNPIRKISSLD  324 (414)
T ss_pred             ccccccccccccccCccccccccc
Confidence            455678888888888887765543

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=5.3e-10  Score=122.79  Aligned_cols=114  Identities=33%  Similarity=0.539  Sum_probs=102.3

Q ss_pred             CCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcc
Q 037315          436 QLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS  515 (693)
Q Consensus       436 ~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  515 (693)
                      .++.|+|++|.+.+.+|..+..                                                     +++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~-----------------------------------------------------L~~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK-----------------------------------------------------LRHLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC-----------------------------------------------------CCCCC
Confidence            4788999999999888877655                                                     55899


Q ss_pred             eEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccC-CCCCEEecCCC
Q 037315          516 GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL-KELAVFSVAYN  594 (693)
Q Consensus       516 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N  594 (693)
                      .|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+... .++..+++.+|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988764 46789999999


Q ss_pred             cCcccCCC
Q 037315          595 NLSGEIPE  602 (693)
Q Consensus       595 ~l~~~~p~  602 (693)
                      +..|..|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            88776553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=2.8e-10  Score=83.44  Aligned_cols=59  Identities=39%  Similarity=0.629  Sum_probs=30.6

Q ss_pred             CCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCc
Q 037315          537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN  595 (693)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  595 (693)
                      +|++|++++|+++.+.++.|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555555544555555555555555555554444555555555555555554

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=2.7e-11  Score=121.94  Aligned_cols=174  Identities=30%  Similarity=0.442  Sum_probs=139.3

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcE
Q 037315          168 HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF  247 (693)
Q Consensus       168 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  247 (693)
                      +.--...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|..++++..|..+|++.|++. .+|..++  .--|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence            344456788888887 78887765 567888888888887 67888888999999999999888 8888776  346888


Q ss_pred             EEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcc
Q 037315          248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL  327 (693)
Q Consensus       248 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  327 (693)
                      |-+++|+++. .|..++..+.|..|+.+.|.+. .+|..+.++.+|+.|.+..|.+. ..|+.+..+ .|.+||++.|++
T Consensus       148 li~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence            8888888876 4666778888888999988888 56667888888888888888887 556666644 478888888888


Q ss_pred             ccCccccccCCCCCCEEECcCCcCC
Q 037315          328 EGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       328 ~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      . .+|..|.++..|++|-|.+|.+.
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC
Confidence            7 67788888889999999888886

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=4.1e-10  Score=82.54  Aligned_cols=61  Identities=49%  Similarity=0.657  Sum_probs=58.0

Q ss_pred             cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccc
Q 037315          512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL  572 (693)
Q Consensus       512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  572 (693)
                      |+|++|++++|++....+..|.++++|++|++++|.++.+.++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4799999999999988888999999999999999999999999999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=2.2e-09  Score=120.36  Aligned_cols=127  Identities=26%  Similarity=0.274  Sum_probs=76.1

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCEEEcccCc--cccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315          195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ--LTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL  272 (693)
Q Consensus       195 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  272 (693)
                      ..+...+-+|.+. ..+... ..+.|++|-+.+|.  +. .++..+|..++.|++||+++|.-.+..|..++.+-+|++|
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            4455555555543 222222 23356666666664  33 5666666666777777777666555566666666777777


Q ss_pred             eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCC
Q 037315          273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN  325 (693)
Q Consensus       273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  325 (693)
                      +++++.+. .+|..+..+..|.+|++..+......+.....+++|++|.+..-
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            77776666 56666666677777777666544444555555666666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.81  E-value=5e-09  Score=117.56  Aligned_cols=316  Identities=22%  Similarity=0.222  Sum_probs=156.7

Q ss_pred             CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCc--ccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCc
Q 037315          120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDS--LAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI  197 (693)
Q Consensus       120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  197 (693)
                      ...+...+.++.+.. ++..  ..+++|++|-+.+|.  +.......|..++.|++||+++|.--+.+|..+++ +-+|+
T Consensus       523 ~~~rr~s~~~~~~~~-~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr  598 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH-IAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR  598 (889)
T ss_pred             hheeEEEEeccchhh-ccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence            345555555554432 2222  345577777777774  44333444667778888888877655577777776 56788


Q ss_pred             EEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccc--ccccCccCCCCCCCCeEecc
Q 037315          198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL--KGHMFSRNFNLINLRWLQLE  275 (693)
Q Consensus       198 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~  275 (693)
                      +|+++++.+. .+|..+.+++.|.+|++..+.....+ ..+...+.+|++|.+.....  .......+..+.+|+.+...
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            8888888777 67777888888888888777654333 33334577888887765431  12222333445555555553


Q ss_pred             CccccccCCcCCcCCCCCC----EEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccC------CCCCCEEE
Q 037315          276 GNHFVGEIPQSLSKCSSLE----GLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCH------LYSLQILD  345 (693)
Q Consensus       276 ~n~l~~~~~~~l~~l~~L~----~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~L~  345 (693)
                      .....  +-..+..+..|.    .+.+.++... ..+..+..+.+|+.|.+.++.+..........      ++++..+.
T Consensus       677 ~~s~~--~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~  753 (889)
T KOG4658|consen  677 ISSVL--LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS  753 (889)
T ss_pred             cchhH--hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence            33220  001122222222    2222222221 33445566677777777777665322211111      12222223


Q ss_pred             CcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCC-cchhhhCCCCCCEEEccCCccc
Q 037315          346 ISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS-IPDWIDGLSQLSHLILGNNNLE  424 (693)
Q Consensus       346 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~  424 (693)
                      +.++............++|+.|.+..+.....+.. ....+..++.+.+..+.+.+. .-...++++++..+.+..=.+.
T Consensus       754 ~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~  832 (889)
T KOG4658|consen  754 ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLE  832 (889)
T ss_pred             hhccccccccchhhccCcccEEEEecccccccCCC-HHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchh
Confidence            33332222222223356666666666655443332 333344444444444444332 1223333444444433332222


Q ss_pred             ccCC---cccCCCCCCCEEEccCC
Q 037315          425 GEVP---VQLCGLNQLQLLDLSNN  445 (693)
Q Consensus       425 ~~~~---~~~~~l~~L~~L~l~~n  445 (693)
                      ....   ..+..+|.+..+.+.+|
T Consensus       833 ~~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  833 ELIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             heehhcCcccccCccccccceecc
Confidence            1111   11234555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=8.1e-10  Score=116.12  Aligned_cols=245  Identities=25%  Similarity=0.250  Sum_probs=129.3

Q ss_pred             CCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEe
Q 037315          194 PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQ  273 (693)
Q Consensus       194 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  273 (693)
                      ..++.+++..|.+.. ....+..+++|+.|++.+|.+. .+...+ ..+++|++|++++|.|+.+  ..+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheeccccccccc--cchhhccchhhhe
Confidence            344444455554442 1223445555566666666555 333311 1255666666666666553  2233445566666


Q ss_pred             ccCccccccCCcCCcCCCCCCEEeccCCcccccCC-ccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315          274 LEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       274 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      +++|.+...  ..+..++.|+.+++++|.+....+ . ...+..++.+.+.+|.+...  ..+..+..+..+++..|.+.
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence            666665532  234445566666666666553322 1 34555666666666665433  22333334444455555554


Q ss_pred             CCCCCCCCCC--cccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccccc---C
Q 037315          353 GSLPSCFHPL--SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE---V  427 (693)
Q Consensus       353 ~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~  427 (693)
                      .. .......  .|+.+++++|.+....  ..+..+..+..+++.+|.+...  ..+...+.+..+....+.+...   .
T Consensus       222 ~~-~~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (414)
T KOG0531|consen  222 KL-EGLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS  296 (414)
T ss_pred             ec-cCcccchhHHHHHHhcccCcccccc--ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence            22 2222222  2566666666653321  1456677888888888877633  2345556666677777765521   1


Q ss_pred             Cc-ccCCCCCCCEEEccCCcCcccCCC
Q 037315          428 PV-QLCGLNQLQLLDLSNNNLHGLIPP  453 (693)
Q Consensus       428 ~~-~~~~l~~L~~L~l~~n~~~~~~~~  453 (693)
                      .. .....+.++...+..|++....+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  297 QEYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             ccccccccccccccccccCcccccccc
Confidence            11 145667888888888877665443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=4.9e-10  Score=103.92  Aligned_cols=157  Identities=24%  Similarity=0.241  Sum_probs=78.4

Q ss_pred             CCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCc-CcccCChhhhhcCCCCcEE
Q 037315          121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN-FQGHIPVEIGDILPRLISF  199 (693)
Q Consensus       121 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L  199 (693)
                      .|+++||+...++..--..+++.|.+|+.|.+.++.+.+.+...+....+|+.|+++.+. ++......+.+.++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666665544334445666777777777777666666666666677777776653 3322222334446666667


Q ss_pred             EccCCcccccCCc-cCCC-CCCCCEEEcccCccc--cccchHHhhCCCCCcEEEccccc-cccccCccCCCCCCCCeEec
Q 037315          200 NISMNALDGSIPS-SFGN-MNLLQILDLSNNQLT--GEIPEHLAMGCVNLEFLALSNNS-LKGHMFSRNFNLINLRWLQL  274 (693)
Q Consensus       200 ~L~~n~i~~~~~~-~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L  274 (693)
                      ++++|......-. .+.+ -++|..|+++++.-.  ..--..+.+.+++|.+|||+.|. ++......|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            7766654421110 1111 134555666554311  00011122345555555555432 22222333444555555555


Q ss_pred             cCc
Q 037315          275 EGN  277 (693)
Q Consensus       275 ~~n  277 (693)
                      +.|
T Consensus       346 sRC  348 (419)
T KOG2120|consen  346 SRC  348 (419)
T ss_pred             hhh
Confidence            544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.8e-09  Score=100.25  Aligned_cols=176  Identities=22%  Similarity=0.191  Sum_probs=116.7

Q ss_pred             CCCeEeccCcccccc-CCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCc--cccccCCCCCCEE
Q 037315          268 NLRWLQLEGNHFVGE-IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI--PVEFCHLYSLQIL  344 (693)
Q Consensus       268 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L  344 (693)
                      .|+++||++..++.. +...++.|.+|+.|.+.++.+.+.+...++.-.+|+.++++.+.--...  .-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            467777776665521 1233556677777777777777666666777777777777766432111  1225678888888


Q ss_pred             ECcCCcCCCCCCC-CCC--CCcccEEEccCcccc---cccCcccccCCCCCcEEeCcCcc-cCCCcchhhhCCCCCCEEE
Q 037315          345 DISDNNISGSLPS-CFH--PLSITQVHLSKNMLH---GQLKGGTFFNCSSLVTLDLSYNL-LNGSIPDWIDGLSQLSHLI  417 (693)
Q Consensus       345 ~l~~n~~~~~~~~-~~~--~~~L~~L~l~~n~~~---~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~  417 (693)
                      +++.|........ ..+  .++++.|+++++.-.   ..+.. ....||+|.+|||++|. ++......|..++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            8888876543321 111  567888888887431   11111 34579999999999974 4444455677899999999


Q ss_pred             ccCCcccccCCc---ccCCCCCCCEEEccCCc
Q 037315          418 LGNNNLEGEVPV---QLCGLNQLQLLDLSNNN  446 (693)
Q Consensus       418 L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~  446 (693)
                      ++.|...  +|.   .+...|+|.+|++.++-
T Consensus       345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            9999753  443   36778999999998763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=7.8e-09  Score=107.32  Aligned_cols=110  Identities=27%  Similarity=0.326  Sum_probs=88.4

Q ss_pred             cccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315          510 VLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF  589 (693)
Q Consensus       510 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  589 (693)
                      .++.++.|+|++|+++..  ..+..++.|++|||+.|.+..++--...++. |+.|.+++|.++..  .++.++.+|+.|
T Consensus       185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhcc
Confidence            377899999999999855  4889999999999999999977544555555 99999999999743  467899999999


Q ss_pred             ecCCCcCcccCC-CCccccCcCCcccccCccCCCCC
Q 037315          590 SVAYNNLSGEIP-EWKAQFATFNENSYEGNTFLCGL  624 (693)
Q Consensus       590 ~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~  624 (693)
                      |+++|-+.+--. +.+..+..+..+.++|||..|..
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999998875211 11235667788899999999973

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=2.7e-09  Score=110.67  Aligned_cols=128  Identities=29%  Similarity=0.256  Sum_probs=86.9

Q ss_pred             CCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCC
Q 037315          387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN  466 (693)
Q Consensus       387 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~  466 (693)
                      -.|...+.+.|.+. .....++-++.|+.|+|++|+++...  .+..++.|++|||+.|.+...+--....         
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~g---------  231 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVG---------  231 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhh---------
Confidence            35677777888876 56667777888888888888887433  6778888888888888876433221111         


Q ss_pred             CCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCc
Q 037315          467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN  546 (693)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  546 (693)
                                                                   ..|+.|.+++|.++..  ..+.++.+|+.||++.|
T Consensus       232 ---------------------------------------------c~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  232 ---------------------------------------------CKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             ---------------------------------------------hhheeeeecccHHHhh--hhHHhhhhhhccchhHh
Confidence                                                         1377777888877644  45677777888888887


Q ss_pred             cCCccCc-ccccCCCCCCEEeCCCcccc
Q 037315          547 NLTGLIP-STFSNLKQIESLDLSYNKLN  573 (693)
Q Consensus       547 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  573 (693)
                      -|.+... .-+..+..|+.|+|.+|++-
T Consensus       265 ll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  265 LLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7765421 22344567777778887775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=7e-08  Score=89.88  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=53.3

Q ss_pred             CCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCC-cchhhhCCCCCCEEEccCCcccccCCc------ccCC
Q 037315          361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS-IPDWIDGLSQLSHLILGNNNLEGEVPV------QLCG  433 (693)
Q Consensus       361 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~  433 (693)
                      ++++..+.+..|.+.+.-....+..+|.+..|+|+.++|..- .-+++.+++.|+.|.++++++.+..-.      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            455666666666665555555666677777888888887642 224677788888888888887643321      1456


Q ss_pred             CCCCCEEEc
Q 037315          434 LNQLQLLDL  442 (693)
Q Consensus       434 l~~L~~L~l  442 (693)
                      +++++.|+=
T Consensus       278 L~~v~vLNG  286 (418)
T KOG2982|consen  278 LTKVQVLNG  286 (418)
T ss_pred             ccceEEecC
Confidence            677776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=8.5e-08  Score=89.35  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=50.0

Q ss_pred             ccCcceEECCCCccccc-CchhhccCCCCCeeeCCCccCCccC-cccccCCCCCCEEeCCCccccccCCc------cccc
Q 037315          511 LSLLSGLDLSCNKLIGH-IPPQVGNLTRIQTLNLSHNNLTGLI-PSTFSNLKQIESLDLSYNKLNGKIPH------QLVE  582 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~------~l~~  582 (693)
                      ++++..+-+-.|++... ..+.+..++.+..|+|+.|+|.+-. -+.+.++++|..|.+++|++...+..      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            45566666666655432 2234556666667777777776542 25667777788888888877643321      2456


Q ss_pred             CCCCCEEecC
Q 037315          583 LKELAVFSVA  592 (693)
Q Consensus       583 l~~L~~L~l~  592 (693)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            7777777644

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=7.6e-08  Score=79.08  Aligned_cols=87  Identities=22%  Similarity=0.330  Sum_probs=48.6

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      .++.|++++|.+. .+|..+..++.|+.|+++.|.+... |..+..+.++-.||..+|.+. .+|..+.--......++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            4556666666666 4555566666677777766666643 445555666666666666665 333332222223333445


Q ss_pred             CCcCcccCCC
Q 037315          593 YNNLSGEIPE  602 (693)
Q Consensus       593 ~N~l~~~~p~  602 (693)
                      ++++.+..|.
T Consensus       155 nepl~~~~~~  164 (177)
T KOG4579|consen  155 NEPLGDETKK  164 (177)
T ss_pred             CCcccccCcc
Confidence            5566555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.17  E-value=3.9e-08  Score=95.97  Aligned_cols=156  Identities=21%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             hcCCCCcEEEccCCccc-ccCCcc-CCCCCCCCEEEcccCc-cccccchHHhhCCCCCcEEEccccccccc--cCccCCC
Q 037315          191 DILPRLISFNISMNALD-GSIPSS-FGNMNLLQILDLSNNQ-LTGEIPEHLAMGCVNLEFLALSNNSLKGH--MFSRNFN  265 (693)
Q Consensus       191 ~~l~~L~~L~L~~n~i~-~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~  265 (693)
                      ..+..|+.|+.+++.-. +..-.+ -.+..+|+.|.++.++ +++.--..+..+++.|+.+++..+.....  ....-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            33455666666555321 111111 2245666666666654 22122223344566777777766643321  2222336


Q ss_pred             CCCCCeEeccCccccccC-----CcCCcCCCCCCEEeccCCccc-ccCCccccCCCCCcEEEccCCccccCcc--ccccC
Q 037315          266 LINLRWLQLEGNHFVGEI-----PQSLSKCSSLEGLYLNNNSLS-GKIPRWLGNLTWLIHIIMPKNHLEGPIP--VEFCH  337 (693)
Q Consensus       266 l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~  337 (693)
                      ++.|+.+.+++|......     ...-..+..++.+.+++++.. +...+.+..+++|+.+++-+++-....+  ..-.+
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            677777777777543221     112234567888888888654 3344566778888888888876432211  12245


Q ss_pred             CCCCCEEEC
Q 037315          338 LYSLQILDI  346 (693)
Q Consensus       338 l~~L~~L~l  346 (693)
                      +|++++..+
T Consensus       451 lp~i~v~a~  459 (483)
T KOG4341|consen  451 LPNIKVHAY  459 (483)
T ss_pred             Cccceehhh
Confidence            666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.13  E-value=6.4e-07  Score=82.54  Aligned_cols=69  Identities=16%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             CCCCCCEEECCCCCCCCc----CCccccCCCCCCCEEECCCCcC---cCcCC------cccccCCCCCcEEEccCCcccc
Q 037315           16 NMTSLRILDVSSNQLTGS----ISSSPLFYLTSIEELSLSNNHF---HIPIS------LEPLFNHSRLKIFYADNNPINA   82 (693)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~~----l~~~~~~~l~~L~~L~Ls~n~~---~~~~~------~~~~~~l~~L~~L~l~~n~~~~   82 (693)
                      .+..++.+|||+|-|...    +.. .+..-.+|+..++|.-..   .+.++      ..++.+|++|+..++|.|.+..
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            355666666666666421    111 233345666666664321   01111      1234555666666666665544


Q ss_pred             ccc
Q 037315           83 KIT   85 (693)
Q Consensus        83 ~~~   85 (693)
                      ..+
T Consensus       107 ~~~  109 (388)
T COG5238         107 EFP  109 (388)
T ss_pred             ccc
Confidence            333

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.10  E-value=8.6e-08  Score=93.67  Aligned_cols=236  Identities=17%  Similarity=0.119  Sum_probs=147.0

Q ss_pred             cCCCCCCEEEccCcc-ccccCchhhhhcCCCCCEEEccCCc-ccccCCC-CCCCCCCCCEEEccCCcCcc-cCChhhhhc
Q 037315          117 YYQHDLEDVHFSRIQ-MNGEFPNWLLENNTKLRQLSLVNDS-LAGPFRL-PIHSHRHLRLLDVSNNNFQG-HIPVEIGDI  192 (693)
Q Consensus       117 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~  192 (693)
                      .++++|+++++..|. +++..-..+...+++|+++++++|. +++.... ...+++.++.+...+|.-.+ +.-......
T Consensus       187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~  266 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY  266 (483)
T ss_pred             HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence            467788888888753 4443334455778999999999883 4442222 23456667777777663211 111112233


Q ss_pred             CCCCcEEEccCCcc-cccC-CccCCCCCCCCEEEcccCcc-ccccchHHhhCCCCCcEEEcccccc-ccccCccC-CCCC
Q 037315          193 LPRLISFNISMNAL-DGSI-PSSFGNMNLLQILDLSNNQL-TGEIPEHLAMGCVNLEFLALSNNSL-KGHMFSRN-FNLI  267 (693)
Q Consensus       193 l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~  267 (693)
                      .+.+..+++.+|.. ++.. ...-..+.+|++|+.+++.- ++.+-..+..++.+|+.|.++.|+- +......+ .+++
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            55677788777743 2211 01123467899999988753 3233345556789999999999873 33222222 3678


Q ss_pred             CCCeEeccCcccccc--CCcCCcCCCCCCEEeccCCcccccC-----CccccCCCCCcEEEccCCcccc-CccccccCCC
Q 037315          268 NLRWLQLEGNHFVGE--IPQSLSKCSSLEGLYLNNNSLSGKI-----PRWLGNLTWLIHIIMPKNHLEG-PIPVEFCHLY  339 (693)
Q Consensus       268 ~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~i~~~~-----~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~  339 (693)
                      .|+.+++..+.....  +...-.+++.|+.+.+++|......     ...-..+..+..+.++++.... ..-..+..++
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            999999999865422  2223356889999999988653221     1122346678899999987643 2334467788


Q ss_pred             CCCEEECcCCcCC
Q 037315          340 SLQILDISDNNIS  352 (693)
Q Consensus       340 ~L~~L~l~~n~~~  352 (693)
                      +|+.+++.+++-.
T Consensus       427 ~Leri~l~~~q~v  439 (483)
T KOG4341|consen  427 NLERIELIDCQDV  439 (483)
T ss_pred             ccceeeeechhhh
Confidence            9999999888653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=9e-07  Score=81.59  Aligned_cols=87  Identities=21%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             CCCCcEEEccccccccc----cCccCCCCCCCCeEeccCccccccCCcC----C--cCCCCCCEEeccCCcccccCCcc-
Q 037315          242 CVNLEFLALSNNSLKGH----MFSRNFNLINLRWLQLEGNHFVGEIPQS----L--SKCSSLEGLYLNNNSLSGKIPRW-  310 (693)
Q Consensus       242 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l--~~l~~L~~L~L~~n~i~~~~~~~-  310 (693)
                      +.+|+.||+..|-++..    ....+...+.|+.|.+.+|-++......    |  ...++|..|...+|.+.+..... 
T Consensus       213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~  292 (388)
T COG5238         213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI  292 (388)
T ss_pred             hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence            45566666665554422    1222334455666666666554322211    1  12355666666666543221111 


Q ss_pred             ------ccCCCCCcEEEccCCccc
Q 037315          311 ------LGNLTWLIHIIMPKNHLE  328 (693)
Q Consensus       311 ------l~~l~~L~~L~l~~n~~~  328 (693)
                            -..++-|..+.+.+|++.
T Consensus       293 ~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         293 SLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             chhhhhhcccHHHHHHHHccCcch
Confidence                  123555666666667665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=4.2e-06  Score=55.78  Aligned_cols=37  Identities=41%  Similarity=0.552  Sum_probs=29.1

Q ss_pred             CCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCc
Q 037315           18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH   56 (693)
Q Consensus        18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~   56 (693)
                      ++|++|++++|+|+ .+|. .+++|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC
Confidence            57888888888888 7776 6888888888888888876

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=1.4e-05  Score=70.89  Aligned_cols=124  Identities=27%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcc
Q 037315          172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS  251 (693)
Q Consensus       172 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  251 (693)
                      +.+++.+.++. .+ ..++....+...+++++|.+..  ...|..++.|.+|.+.+|+|+ .|...+...+++|+.|.+.
T Consensus        22 ~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc-ch-hhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            45566665553 11 1233334567777888887752  235677778888888888887 6666665557778888888


Q ss_pred             cccccccc-CccCCCCCCCCeEeccCccccccCC---cCCcCCCCCCEEeccC
Q 037315          252 NNSLKGHM-FSRNFNLINLRWLQLEGNHFVGEIP---QSLSKCSSLEGLYLNN  300 (693)
Q Consensus       252 ~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~  300 (693)
                      +|++.... ...+..+|+|++|.+-+|.+...--   ..+..+++|+.||..+
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77776432 1234556666666666666553211   1234455555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=6.5e-06  Score=54.86  Aligned_cols=36  Identities=42%  Similarity=0.722  Sum_probs=16.7

Q ss_pred             CCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315          537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN  573 (693)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  573 (693)
                      +|++|++++|+|+.+ |..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence            445555555555543 223455555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.87  E-value=8.5e-07  Score=73.07  Aligned_cols=87  Identities=23%  Similarity=0.398  Sum_probs=51.4

Q ss_pred             CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCc
Q 037315          167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLE  246 (693)
Q Consensus       167 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  246 (693)
                      ....|+..++++|.+. .+|..+...+|.++.|++++|.|. .+|..++.++.|+.|+++.|.+. ..|..++. +.++-
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~  126 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLD  126 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHH
Confidence            3345555666666665 566665555556666666666665 34555666666666666666665 55555553 55566


Q ss_pred             EEEcccccccc
Q 037315          247 FLALSNNSLKG  257 (693)
Q Consensus       247 ~L~l~~n~l~~  257 (693)
                      .|+..+|.+..
T Consensus       127 ~Lds~~na~~e  137 (177)
T KOG4579|consen  127 MLDSPENARAE  137 (177)
T ss_pred             HhcCCCCcccc
Confidence            66655555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=5.6e-05  Score=76.39  Aligned_cols=54  Identities=17%  Similarity=0.157  Sum_probs=26.5

Q ss_pred             CCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 037315          386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN  445 (693)
Q Consensus       386 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  445 (693)
                      +.+++.|++++|.++ .+|.   -.++|++|.+++|.-....|..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            455666666666554 2331   11246666665544333444333  245666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.76  E-value=6.8e-05  Score=64.73  Aligned_cols=122  Identities=19%  Similarity=0.231  Sum_probs=41.1

Q ss_pred             cCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCC
Q 037315          213 SFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSS  292 (693)
Q Consensus       213 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  292 (693)
                      .|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            344444455544442 233 444444444444555554442 4443444444444455555543 222223334444555


Q ss_pred             CCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCC
Q 037315          293 LEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL  341 (693)
Q Consensus       293 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  341 (693)
                      ++.+++..+ +.......+.++ .++.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555555443 332333444444 555555543 2222334445555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.75  E-value=4.9e-05  Score=67.46  Aligned_cols=104  Identities=23%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             CCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccC-CccccCCCCCcEEEc
Q 037315          244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLTWLIHIIM  322 (693)
Q Consensus       244 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~l  322 (693)
                      +...+|+++|.+...  ..|..++.|.+|.+.+|+|+.+.|.--..+++|+.|.+.+|.+.... ...+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            344444444444331  23334444555555555554443332233444555555555443211 122334455555555


Q ss_pred             cCCccccCcc---ccccCCCCCCEEECcCC
Q 037315          323 PKNHLEGPIP---VEFCHLYSLQILDISDN  349 (693)
Q Consensus       323 ~~n~~~~~~~---~~~~~l~~L~~L~l~~n  349 (693)
                      -+|.+...--   ..+..+|+|+.||..+-
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhh
Confidence            5554432111   12445666666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=1.2e-05  Score=88.31  Aligned_cols=16  Identities=25%  Similarity=0.368  Sum_probs=8.9

Q ss_pred             CCCCcEEEcccccccc
Q 037315          242 CVNLEFLALSNNSLKG  257 (693)
Q Consensus       242 l~~L~~L~l~~n~l~~  257 (693)
                      +|+|+.||.|++.+..
T Consensus       249 LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINE  264 (699)
T ss_pred             CccccEEecCCcchhH
Confidence            5566666666555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.73  E-value=8.7e-05  Score=64.08  Aligned_cols=63  Identities=17%  Similarity=0.298  Sum_probs=31.2

Q ss_pred             cccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccC
Q 037315          380 GGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN  444 (693)
Q Consensus       380 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  444 (693)
                      ..+|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +.......|.++++++.+.+.+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            34666677777777664 344445556666666777776654 5444455566666666666644

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.0002  Score=72.54  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             hhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCC
Q 037315          407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPP  453 (693)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  453 (693)
                      +..+.+++.|++++|.++ .+|. +  .++|+.|.+++|.-....|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~   90 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPG   90 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCc
Confidence            455789999999999888 4452 2  34799999999765545554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=3.3e-05  Score=85.05  Aligned_cols=135  Identities=19%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             CCCcEEEccCCc-cccccccccCCCCCCccccEEecCCCCCC-CCcCchhhcCCCCCCEEEccCccccccCchhhhhcCC
Q 037315           68 SRLKIFYADNNP-INAKITKSHTLTTPKFQLASLSLSSSYGD-GVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNT  145 (693)
Q Consensus        68 ~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  145 (693)
                      .+|++|++++.. +...++...+..+|  +|+.|.+ .+... ...+.....++++|..||++++++...  .. .++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LP--sL~sL~i-~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~G-IS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLP--SLRSLVI-SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SG-ISRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCc--ccceEEe-cCceecchhHHHHhhccCccceeecCCCCccCc--HH-Hhccc
Confidence            678888888755 33344444444444  7888888 44333 333444556788899999998887754  23 36788


Q ss_pred             CCCEEEccCCcccc-cCCCCCCCCCCCCEEEccCCcCcccCCh------hhhhcCCCCcEEEccCCccccc
Q 037315          146 KLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNNNFQGHIPV------EIGDILPRLISFNISMNALDGS  209 (693)
Q Consensus       146 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~------~~~~~l~~L~~L~L~~n~i~~~  209 (693)
                      +|++|.+.+-.+.. .....+..+++|++||+|..+.. ..+.      +.+..+|+|+.||.+++.+.+.
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            88888887766653 22234667889999999887654 2222      1234478999999998877643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.28  E-value=1.8e-05  Score=85.98  Aligned_cols=36  Identities=25%  Similarity=0.111  Sum_probs=17.9

Q ss_pred             CcEEeCcCcccCCC-cchhhhC-CCCCCEEEccCCccc
Q 037315          389 LVTLDLSYNLLNGS-IPDWIDG-LSQLSHLILGNNNLE  424 (693)
Q Consensus       389 L~~L~L~~n~i~~~-~~~~~~~-l~~L~~L~L~~n~l~  424 (693)
                      ++.|+++.+..... .-..... +.+++.+++.++...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            66677766653211 1111111 556666666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.22  E-value=0.00024  Score=66.07  Aligned_cols=68  Identities=22%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             cchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCC--cCcCcCCcccccCCCCCcEEEccCCccc
Q 037315           10 LPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNN--HFHIPISLEPLFNHSRLKIFYADNNPIN   81 (693)
Q Consensus        10 ~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (693)
                      +......+..|+.|++.+..++ ++..  +-.|++|++|.+|.|  ++.+..+. ....+++|++|++++|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence            5666777888888888888877 5554  667889999999999  55544442 3344699999999999875

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.67  E-value=0.00017  Score=78.32  Aligned_cols=177  Identities=22%  Similarity=0.110  Sum_probs=101.7

Q ss_pred             cCCCCCCEEEccCccccccC-chhhhhcCCCCCEEEccCC-cccccC----CCCCCCCCCCCEEEccCCc-CcccCChhh
Q 037315          117 YYQHDLEDVHFSRIQMNGEF-PNWLLENNTKLRQLSLVND-SLAGPF----RLPIHSHRHLRLLDVSNNN-FQGHIPVEI  189 (693)
Q Consensus       117 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~n~-~~~~~~~~~  189 (693)
                      ..++.|+.+.+.++...... -..+...++.|++|+++++ ......    ......+++|+.|+++.+. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            34678888888877443321 1233467888999998873 111111    1234456888899998887 665555566


Q ss_pred             hhcCCCCcEEEccCCc-ccccCC-ccCCCCCCCCEEEcccCcccc-ccchHHhhCCCCCcEEEccccccccccCccCCCC
Q 037315          190 GDILPRLISFNISMNA-LDGSIP-SSFGNMNLLQILDLSNNQLTG-EIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNL  266 (693)
Q Consensus       190 ~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  266 (693)
                      ...+++|++|.+.+|. +++..- .....++.|++|+++++.... ..-.....++++++.|.+....-          +
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c  334 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C  334 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence            6668899999987776 443222 223457889999999876531 21122244577777765443321          3


Q ss_pred             CCCCeEeccCcccc---ccCCcCCcCCCCCCEEeccCCcc
Q 037315          267 INLRWLQLEGNHFV---GEIPQSLSKCSSLEGLYLNNNSL  303 (693)
Q Consensus       267 ~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~i  303 (693)
                      +.++.+.+.+....   .........+++++.+.+..+..
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence            34444444433221   11112344566666666666653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.00011  Score=68.45  Aligned_cols=78  Identities=28%  Similarity=0.322  Sum_probs=47.1

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCCc-----ccccCC
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIPH-----QLVELK  584 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-----~l~~l~  584 (693)
                      ++.|++|.||-|+|+..  ..+..+++|++|+|..|.|.++.. ..+.++++|+.|.|..|+-.+..+.     .+.-||
T Consensus        40 Mp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             cccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            56667777777766654  335666677777777776665532 4456667777777777766554433     233455


Q ss_pred             CCCEEe
Q 037315          585 ELAVFS  590 (693)
Q Consensus       585 ~L~~L~  590 (693)
                      +|+.||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.57  E-value=0.0014  Score=61.22  Aligned_cols=69  Identities=22%  Similarity=0.282  Sum_probs=54.7

Q ss_pred             hccCCCCCCEEECCCC--CCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcccc
Q 037315           13 CLANMTSLRILDVSSN--QLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINA   82 (693)
Q Consensus        13 ~~~~l~~L~~L~Ls~n--~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (693)
                      .|-.+++|++|++|.|  .+.+.++. ....+++|++|++++|++...-....+..+.+|..|++.+|..+.
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            4566889999999999  67666665 566779999999999999754444567778889999998887653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.00023  Score=66.42  Aligned_cols=87  Identities=20%  Similarity=0.186  Sum_probs=73.2

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCC-cccccCCCCCEE
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP-HQLVELKELAVF  589 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L  589 (693)
                      +.+.+.|++.+|++.++  .....++.|++|.||-|+|+.+  ..|..++.|++|+|..|.|..... ..+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            56788999999999865  4577899999999999999988  558899999999999999974332 346789999999


Q ss_pred             ecCCCcCcccCC
Q 037315          590 SVAYNNLSGEIP  601 (693)
Q Consensus       590 ~l~~N~l~~~~p  601 (693)
                      .|..|+-.|.-+
T Consensus        94 WL~ENPCc~~ag  105 (388)
T KOG2123|consen   94 WLDENPCCGEAG  105 (388)
T ss_pred             hhccCCcccccc
Confidence            999999776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.31  E-value=0.005  Score=33.93  Aligned_cols=21  Identities=48%  Similarity=0.567  Sum_probs=12.7

Q ss_pred             CCCEEECCCCCCCCcCCccccCC
Q 037315           19 SLRILDVSSNQLTGSISSSPLFY   41 (693)
Q Consensus        19 ~L~~L~Ls~n~l~~~l~~~~~~~   41 (693)
                      +|++|||++|+++ .+|. .|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~-~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPS-SFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGT-TTTT
T ss_pred             CccEEECCCCcCE-eCCh-hhcC
Confidence            4666677776666 6666 3443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.77  E-value=0.0098  Score=32.74  Aligned_cols=11  Identities=64%  Similarity=0.658  Sum_probs=4.5

Q ss_pred             CEEeCCCcccc
Q 037315          563 ESLDLSYNKLN  573 (693)
Q Consensus       563 ~~L~Ls~N~l~  573 (693)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.49  E-value=0.022  Score=29.00  Aligned_cols=14  Identities=57%  Similarity=0.821  Sum_probs=6.6

Q ss_pred             CCCCEEECCCCCCC
Q 037315           18 TSLRILDVSSNQLT   31 (693)
Q Consensus        18 ~~L~~L~Ls~n~l~   31 (693)
                      ++|+.|+|++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666655

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.62  E-value=0.061  Score=30.96  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=14.8

Q ss_pred             CCCCCEEECCCCCCCCcCCcccc
Q 037315           17 MTSLRILDVSSNQLTGSISSSPL   39 (693)
Q Consensus        17 l~~L~~L~Ls~n~l~~~l~~~~~   39 (693)
                      +++|++|+|++|+|+ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456777777777776 6766444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.62  E-value=0.061  Score=30.96  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=14.8

Q ss_pred             CCCCCEEECCCCCCCCcCCcccc
Q 037315           17 MTSLRILDVSSNQLTGSISSSPL   39 (693)
Q Consensus        17 l~~L~~L~Ls~n~l~~~l~~~~~   39 (693)
                      +++|++|+|++|+|+ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456777777777776 6766444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.57  E-value=0.094  Score=30.17  Aligned_cols=18  Identities=39%  Similarity=0.702  Sum_probs=8.2

Q ss_pred             CCCeeeCCCccCCccCcc
Q 037315          537 RIQTLNLSHNNLTGLIPS  554 (693)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~  554 (693)
                      +|+.|+|++|+|+.+++.
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            444444444444444333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.57  E-value=0.094  Score=30.17  Aligned_cols=18  Identities=39%  Similarity=0.702  Sum_probs=8.2

Q ss_pred             CCCeeeCCCccCCccCcc
Q 037315          537 RIQTLNLSHNNLTGLIPS  554 (693)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~  554 (693)
                      +|+.|+|++|+|+.+++.
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            444444444444444333

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.32  E-value=0.001  Score=70.21  Aligned_cols=87  Identities=22%  Similarity=0.170  Sum_probs=39.0

Q ss_pred             CCCCCeEeccCccccccC----CcCCcCCCC-CCEEeccCCcccccC----CccccCC-CCCcEEEccCCccccCcc---
Q 037315          266 LINLRWLQLEGNHFVGEI----PQSLSKCSS-LEGLYLNNNSLSGKI----PRWLGNL-TWLIHIIMPKNHLEGPIP---  332 (693)
Q Consensus       266 l~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~L~~n~i~~~~----~~~l~~l-~~L~~L~l~~n~~~~~~~---  332 (693)
                      ..++++|.+.+|.++...    ...+...+. +..|++..|.+.+..    ...+..+ ..+++++++.|.+.....   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            345555555555544211    112222333 444666666554321    1122223 344555555555543322   


Q ss_pred             -ccccCCCCCCEEECcCCcCC
Q 037315          333 -VEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       333 -~~~~~l~~L~~L~l~~n~~~  352 (693)
                       ..+..++.++.+.+++|.+.
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccc
Confidence             22334555666666666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.94  E-value=0.00075  Score=71.20  Aligned_cols=195  Identities=21%  Similarity=0.168  Sum_probs=87.6

Q ss_pred             CCEEECCCCcCcCcCC---cccccCCCCCcEEEccCCccccccccccCCCCCC--ccccEEecCCCCCCCCc----Cchh
Q 037315           45 IEELSLSNNHFHIPIS---LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPK--FQLASLSLSSSYGDGVT----FPKF  115 (693)
Q Consensus        45 L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~----~~~~  115 (693)
                      +.+|.|.+|.+.....   ...+.....|..|++++|.+.+.....+...+..  ..++.|.+ ..|.++..    +...
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l-~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLEL-VSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHh-hcccccccchHHHHHH
Confidence            6666666666642211   1233445666667777766654443333332222  14444554 33333322    2233


Q ss_pred             hcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhh---hc
Q 037315          116 LYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIG---DI  192 (693)
Q Consensus       116 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~---~~  192 (693)
                      +.....++.++++.|.+...........                 ....+....++++|.+++|.++...-..+.   ..
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~-----------------l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~  230 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQA-----------------LESAASPLSSLETLKLSRCGVTSSSCALLDEVLAS  230 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhh-----------------hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhc
Confidence            3344445555555554421000000000                 000122344555555555554411111111   11


Q ss_pred             CCC-CcEEEccCCccccc----CCccCCCC-CCCCEEEcccCccccccchHHh---hCCCCCcEEEcccccccc
Q 037315          193 LPR-LISFNISMNALDGS----IPSSFGNM-NLLQILDLSNNQLTGEIPEHLA---MGCVNLEFLALSNNSLKG  257 (693)
Q Consensus       193 l~~-L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~  257 (693)
                      .+. ++.|++..|.+.+.    ....+..+ ..+++++++.|.+++.-.....   ..++.++++.++.|.+..
T Consensus       231 ~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  231 GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            222 44566666655432    12223334 5667777777777643322221   245677788888777764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.58  E-value=0.055  Score=48.69  Aligned_cols=84  Identities=17%  Similarity=0.127  Sum_probs=59.7

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCcc-Cccccc-CCCCCCEEeCCCcc-ccccCCcccccCCCCCEE
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL-IPSTFS-NLKQIESLDLSYNK-LNGKIPHQLVELKELAVF  589 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L  589 (693)
                      .++.+|-++..|..+--+.+.++++++.|.+.+|.--+- --+.++ ..++|+.|+|++|+ |+...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            478899999999887777888889999999988864321 001111 34789999999774 665555667778888888


Q ss_pred             ecCCCcC
Q 037315          590 SVAYNNL  596 (693)
Q Consensus       590 ~l~~N~l  596 (693)
                      .+.+=+-
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            7765443

>TIGR00864 PCC polycystin cation channel protein

Probab=89.26  E-value=0.26  Score=61.46  Aligned_cols=36  Identities=19%  Similarity=0.165  Sum_probs=23.4

Q ss_pred             eCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          566 DLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       566 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|.+.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~   36 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG   36 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence            466666666666666666667777776666666544

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.95  E-value=0.015  Score=53.28  Aligned_cols=84  Identities=19%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      +...+.||++.|++. .....|+-++.|..|+++.|.+.- .|..++.+..+..+++.+|..+ ..|..+...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            446788999999887 445668888899999999999984 4788888899999999999887 7888899999999999


Q ss_pred             cCCCcCc
Q 037315          591 VAYNNLS  597 (693)
Q Consensus       591 l~~N~l~  597 (693)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999875

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.31  E-value=0.042  Score=49.41  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=38.6

Q ss_pred             CCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcc-cCChhhhhcCCCCcEEEccCCc-ccccCCccCCCCCCCCEEE
Q 037315          147 LRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQG-HIPVEIGDILPRLISFNISMNA-LDGSIPSSFGNMNLLQILD  224 (693)
Q Consensus       147 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~  224 (693)
                      ++.++-+++.+.......+..++.++.|.+.+|.--+ ..-..++...++|+.|++++|. |++..-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4555555555554444445555555555555553211 1111122234566666666553 4433333445555666555


Q ss_pred             ccc
Q 037315          225 LSN  227 (693)
Q Consensus       225 L~~  227 (693)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.41  E-value=0.13  Score=28.84  Aligned_cols=13  Identities=46%  Similarity=0.787  Sum_probs=5.1

Q ss_pred             CCCEEeCCCcccc
Q 037315          561 QIESLDLSYNKLN  573 (693)
Q Consensus       561 ~L~~L~Ls~N~l~  573 (693)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.70  E-value=0.028  Score=51.44  Aligned_cols=90  Identities=26%  Similarity=0.361  Sum_probs=73.8

Q ss_pred             chhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccC
Q 037315          529 PPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFA  608 (693)
Q Consensus       529 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~  608 (693)
                      ...+......+.||++.|++... -..|+-++.|..||++.|++. ..|..+..+..+..+++.+|..+ ..|..+.+.+
T Consensus        35 v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~  111 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP  111 (326)
T ss_pred             hhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence            34567788999999999998765 356778899999999999998 78888888888999999999887 4566667888


Q ss_pred             cCCcccccCccCC
Q 037315          609 TFNENSYEGNTFL  621 (693)
Q Consensus       609 ~l~~~~~~~n~~~  621 (693)
                      ........+||+.
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            8887777777754

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.27  E-value=0.93  Score=26.02  Aligned_cols=15  Identities=40%  Similarity=0.645  Sum_probs=9.1

Q ss_pred             CCCCCEEECCCCCCC
Q 037315           17 MTSLRILDVSSNQLT   31 (693)
Q Consensus        17 l~~L~~L~Ls~n~l~   31 (693)
                      +++|++|+|++|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            345666666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	693
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-50
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-28
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-49
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-16
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  194 bits (494), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 187/665 (28%), Positives = 294/665 (44%), Gaps = 87/665 (13%)
Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNH--SRLK 71
           L + + L+ L+VSSN L      S    L S+E L LS N       +  + +     LK
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 178
Query: 72  IFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQ 131
                 N I+  +  S  +      ++S + S+          FL     L+ +  S  +
Sbjct: 179 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-------PFLGDCSALQHLDISGNK 231
Query: 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
           ++G+F +  +   T+L+ L++ ++   GP  +P    + L+ L ++ N F G IP  +  
Sbjct: 232 LSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 192 ILPRLISFNISMNALDGSIPSSFG-------------------------NMNLLQILDLS 226
               L   ++S N   G++P  FG                          M  L++LDLS
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLI-----NLRWLQLEGNHFVG 281
            N+ +GE+PE L     +L  L LS+N+  G +     NL       L+ L L+ N F G
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTG 405
Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           +IP +LS CS L  L+L+ N LSG IP  LG+L+ L  + +  N LEG IP E  ++ +L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           + L +  N+++G +PS                           NC++L  + LS N L G
Sbjct: 466 ETLILDFNDLTGEIPSGLS------------------------NCTNLNWISLSNNRLTG 501
Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCF--DNTK 459
            IP WI  L  L+ L L NN+  G +P                   +G IP      + K
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 460 LHES--------YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI-AYIFQGKV 510
           +  +        Y  +    ++     ++   QG   +++         NI + ++ G  
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 511 LSLLSG------LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
                       LD+S N L G+IP ++G++  +  LNL HN+++G IP    +L+ +  
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGL 624
           LDLS NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF    +  N  LCG 
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 740
Query: 625 PLPIC 629
           PLP C
Sbjct: 741 PLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 150/499 (30%), Positives = 219/499 (43%), Gaps = 68/499 (13%)
Query: 153 VNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPV--EIGDILPRLISFNISMNALDGSI 210
           +N S++G           L  LD+S N+  G +     +G     L   N+S N LD   
Sbjct: 86  INGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPG 139
Query: 211 PSSFG-NMNLLQILDLSNNQLTGE--IPEHLAMGCVNLEFLALSNNSLKGHM-FSRNFNL 266
             S G  +N L++LDLS N ++G   +   L+ GC  L+ LA+S N + G +  SR    
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---C 196
Query: 267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH 326
           +NL +L +  N+F   IP  L  CS+L+ L ++ N LSG   R +   T L  + +  N 
Sbjct: 197 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC 386
             GPIP     L SLQ L +++N  +G +P               + L G         C
Sbjct: 256 FVGPIPP--LPLKSLQYLSLAENKFTGEIP---------------DFLSGA--------C 290
Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXX 446
            +L  LDLS N   G++P +    S L  L L +NN  GE+P+                 
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 447 X-HGLIPPCFDNTK-----LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK 500
              G +P    N       L  S NN S P     IL ++  +    +  +QE +     
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNLCQNP---KNTLQELYLQNNG 402
Query: 501 NIAYIFQGKV------LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPS 554
                F GK+       S L  L LS N L G IP  +G+L++++ L L  N L G IP 
Sbjct: 403 -----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 555 TFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENS 614
               +K +E+L L +N L G+IP  L     L   S++ N L+GEIP+W  +        
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 615 YEGNTFLCGLP--LPICRS 631
              N+F   +P  L  CRS
Sbjct: 518 LSNNSFSGNIPAELGDCRS 536

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 187/665 (28%), Positives = 294/665 (44%), Gaps = 87/665 (13%)
Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNH--SRLK 71
           L + + L+ L+VSSN L      S    L S+E L LS N       +  + +     LK
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 72  IFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQ 131
                 N I+  +  S  +      ++S + S+          FL     L+ +  S  +
Sbjct: 182 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-------PFLGDCSALQHLDISGNK 234
Query: 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
           ++G+F +  +   T+L+ L++ ++   GP  +P    + L+ L ++ N F G IP  +  
Sbjct: 235 LSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 192 ILPRLISFNISMNALDGSIPSSFG-------------------------NMNLLQILDLS 226
               L   ++S N   G++P  FG                          M  L++LDLS
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLI-----NLRWLQLEGNHFVG 281
            N+ +GE+PE L     +L  L LS+N+  G +     NL       L+ L L+ N F G
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTG 408
Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           +IP +LS CS L  L+L+ N LSG IP  LG+L+ L  + +  N LEG IP E  ++ +L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           + L +  N+++G +PS                           NC++L  + LS N L G
Sbjct: 469 ETLILDFNDLTGEIPSGLS------------------------NCTNLNWISLSNNRLTG 504
Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCF--DNTK 459
            IP WI  L  L+ L L NN+  G +P                   +G IP      + K
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 460 LHES--------YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI-AYIFQGKV 510
           +  +        Y  +    ++     ++   QG   +++         NI + ++ G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 511 LSLLSG------LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
                       LD+S N L G+IP ++G++  +  LNL HN+++G IP    +L+ +  
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGL 624
           LDLS NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF    +  N  LCG 
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743
Query: 625 PLPIC 629
           PLP C
Sbjct: 744 PLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 150/499 (30%), Positives = 219/499 (43%), Gaps = 68/499 (13%)
Query: 153 VNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPV--EIGDILPRLISFNISMNALDGSI 210
           +N S++G           L  LD+S N+  G +     +G     L   N+S N LD   
Sbjct: 89  INGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPG 142
Query: 211 PSSFG-NMNLLQILDLSNNQLTGE--IPEHLAMGCVNLEFLALSNNSLKGHM-FSRNFNL 266
             S G  +N L++LDLS N ++G   +   L+ GC  L+ LA+S N + G +  SR    
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---C 199
Query: 267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH 326
           +NL +L +  N+F   IP  L  CS+L+ L ++ N LSG   R +   T L  + +  N 
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC 386
             GPIP     L SLQ L +++N  +G +P               + L G         C
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIP---------------DFLSGA--------C 293
Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXX 446
            +L  LDLS N   G++P +    S L  L L +NN  GE+P+                 
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 447 X-HGLIPPCFDNTK-----LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK 500
              G +P    N       L  S NN S P     IL ++  +    +  +QE +     
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNLCQNP---KNTLQELYLQNNG 405
Query: 501 NIAYIFQGKVLSLLS------GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPS 554
                F GK+   LS       L LS N L G IP  +G+L++++ L L  N L G IP 
Sbjct: 406 -----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 555 TFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENS 614
               +K +E+L L +N L G+IP  L     L   S++ N L+GEIP+W  +        
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 615 YEGNTFLCGLP--LPICRS 631
              N+F   +P  L  CRS
Sbjct: 521 LSNNSFSGNIPAELGDCRS 539

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 138/340 (40%), Gaps = 87/340 (25%)
Query: 298 LNNNSLSG-------KIPRWLGNLTWLIHI-IMPKNHLEGPIPVEFCHLYSLQILDISDN 349
           +NN  LSG        IP  L NL +L  + I   N+L GPIP     L  L  L I+  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 350 NISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDG 409
           N+SG++P                    Q+K        +LVTLD SYN L+G++P  I  
Sbjct: 112 NVSGAIPDFLS----------------QIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 410 LSQLSHLILGNNNLEGEVPVXXXXXXXXXXXXXXXXXXHGLIPPCFDNTKLHESYNNSSS 469
           L  L  +    N +                         G IP         +SY + S 
Sbjct: 148 LPNLVGITFDGNRIS------------------------GAIP---------DSYGSFS- 173
Query: 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP 529
                K+  S+   +  +  KI     F   N+A++            DLS N L G   
Sbjct: 174 -----KLFTSMTISRNRLTGKIPP--TFANLNLAFV------------DLSRNMLEGDAS 214
Query: 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589
              G+    Q ++L+ N+L   +       K +  LDL  N++ G +P  L +LK L   
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 590 SVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPIC 629
           +V++NNL GEIP+       F+ ++Y  N  LCG PLP C
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
           RLLD+  N  +     E     P L    ++ N +    P +F N+  L+ L L +N+L 
Sbjct: 35  RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 232 GEIPEHLAMGCVNLEFLALSNNS---LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLS 288
             IP  +  G  NL  L +S N    L  +MF    +L NL+ L++  N  V    ++ S
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRAFS 149
Query: 289 KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD 348
             +SLE L L   +L+      L +L  LI + +   ++       F  LY L++L+IS 
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 349 -NNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT---LDLSYN 397
              +    P+C + L++T + ++    H  L    +     LV    L+LSYN
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	693
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-140
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-113
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  428 bits (1104), Expect = e-140
 Identities = 171/633 (27%), Positives = 258/633 (40%), Gaps = 95/633 (15%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           ++ N     +P+ L + ++L+ LD+S N+L+G  S + +   T ++ L++S+N F  PI 
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI- 263

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
             P      L+      N    +I    +       L  L LS ++  G   P F     
Sbjct: 264 --PPLPLKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYG-AVPPFFGSCS 318

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHS-HRHLRLLDVSNN 179
            LE +  S    +GE P   L     L+ L L  +  +G     + +    L  LD+S+N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 180 NFQGHIPVEIGDI-LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
           NF G I   +       L    +  N   G IP +  N + L  L LS N L+G IP  L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298
                 L  L L  N L+G +      +  L  L L+ N   GEIP  LS C++L  + L
Sbjct: 439 GS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSC 358
           +NN L+G+IP+W+G L  L  + +  N   G IP E     SL  LD++ N  +G++P+ 
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

Query: 359 FHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLIL 418
                                    F  S      ++ N + G    +I           
Sbjct: 558 M------------------------FKQS----GKIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 419 GNN--NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKI 476
             N    +G    QL  L+     ++++    G   P FDN                   
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN------------------- 630

Query: 477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT 536
                                                +  LD+S N L G+IP ++G++ 
Sbjct: 631 ----------------------------------NGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL 596
            +  LNL HN+++G IP    +L+ +  LDLS NKL+G+IP  +  L  L    ++ NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 597 SGEIPEWKAQFATFNENSYEGNTFLCGLPLPIC 629
           SG IPE   QF TF    +  N  LCG PLP C
Sbjct: 717 SGPIPEMG-QFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  358 bits (922), Expect = e-113
 Identities = 164/627 (26%), Positives = 264/627 (42%), Gaps = 105/627 (16%)

Query: 4   NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH--IPISL 61
           N    ++   L ++T L  L +S++ + GS+S        S+  L LS N     +    
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 62  EPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD 121
             L + S LK     +N ++     S            L L+S                 
Sbjct: 121 S-LGSCSGLKFLNVSSNTLDFPGKVSG----------GLKLNS----------------- 152

Query: 122 LEDVHFSRIQMNGEFPNWLLENN--TKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
           LE +  S   ++G      + ++   +L+ L++  + ++G   + +    +L  LDVS+N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSN 210

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
           NF   IP  +GD    L   +IS N L G    +      L++L++S+NQ  G IP    
Sbjct: 211 NFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP- 267

Query: 240 MGCVNLEFLALSNNSLKGHM-FSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298
               +L++L+L+ N   G +    +     L  L L GNHF G +P     CS LE L L
Sbjct: 268 --LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 299 NNNSLSGKIPR-WLGNLTWLIHIIMPKNHLEGPIPVEFCHL-YSLQILDISDNNISGSLP 356
           ++N+ SG++P   L  +  L  + +  N   G +P    +L  SL  LD+S NN SG + 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 357 SCF---HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQL 413
                    ++ +++L  N   G++   T  NCS LV+L LS+N L+G+IP  +  LS+L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 414 SHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQ 473
             L L  N LEGE+P +L  +  L+ L L  N+L G IP    N                
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN---------------- 488

Query: 474 FKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG 533
                                                 + L+ + LS N+L G IP  +G
Sbjct: 489 -------------------------------------CTNLNWISLSNNRLTGEIPKWIG 511

Query: 534 NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAY 593
            L  +  L LS+N+ +G IP+   + + +  LDL+ N  NG IP  + +        +A 
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAA 567

Query: 594 NNLSGEIPEWKAQFATFNENSYEGNTF 620
           N ++G+   +        E    GN  
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  316 bits (811), Expect = 2e-97
 Identities = 145/519 (27%), Positives = 220/519 (42%), Gaps = 73/519 (14%)

Query: 97  LASLSLSSS--YGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVN 154
           + S+ LSS             L     LE +  S   +NG       + +  L  L L  
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSR 109

Query: 155 DSLAG--PFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPS 212
           +SL+G       + S   L+ L+VS+N       V  G  L  L   ++S N++ G+   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 213 SF---GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINL 269
            +        L+ L +S N+++G++       CVNLEFL +S+N+    +     +   L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFL-GDCSAL 225

Query: 270 RWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG 329
           + L + GN   G+  +++S C+ L+ L +++N   G IP     L  L ++ + +N   G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 330 PIPVEFCH-LYSLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCS 387
            IP        +L  LD+S N+  G++P  F   S +  + LS N   G+L   T     
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 388 SLVTLDLSYNLLNGSIPDWIDGLS-QLSHLILGNNNLEGEVPVQLCG--LNQLQLLDLSN 444
            L  LDLS+N  +G +P+ +  LS  L  L L +NN  G +   LC    N LQ L L N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 445 NNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           N   G IPP   N                                               
Sbjct: 404 NGFTGKIPPTLSN----------------------------------------------- 416

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
                  S L  L LS N L G IP  +G+L++++ L L  N L G IP     +K +E+
Sbjct: 417 ------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEW 603
           L L +N L G+IP  L     L   S++ N L+GEIP+W
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (370), Expect = 1e-36
 Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 62/276 (22%)

Query: 336 CHLYSLQILDISDNNIS---GSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVT 391
           C    +  +D+S   ++    ++ S    L+ +  + LS + ++G + G  F   +SL +
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 392 LDLSYNLLNGSIPD--WIDGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLH 448
           LDLS N L+G +     +   S L  L + +N L+    V     LN L++LDLS N++ 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 449 GLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQG 508
           G     +         +                                           
Sbjct: 165 GANVVGW------VLSDGCGE--------------------------------------- 179

Query: 509 KVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
                L  L +S NK+ G +   V     ++ L++S NN +  IP    +   ++ LD+S
Sbjct: 180 -----LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231

Query: 569 YNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWK 604
            NKL+G     +    EL + +++ N   G IP   
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  257 bits (658), Expect = 4e-76
 Identities = 112/643 (17%), Positives = 195/643 (30%), Gaps = 110/643 (17%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPI 59
           +  N ++           +L  LD+S N L+ +   +    L +++EL LSNN    +  
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKS 162

Query: 60  SLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQ 119
               +F +S LK     +N I                                P   +  
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFS----------------------------PGCFHAI 194

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
             L  +  + +Q+       L                          ++  +R L +SN+
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLE----------------------LANTSIRNLSLSNS 232

Query: 180 NFQGHIPVEIGDI-LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
                       +    L   ++S N L+     SF  +  L+   L  N +       L
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298
             G  N+ +L L                 +     +           S      LE L +
Sbjct: 293 H-GLFNVRYLNLKR---------------SFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLE--GPIPVEFCHLY--SLQILDISDNNISGS 354
            +N + G        L  L ++ +  +           F  L    L IL+++ N IS  
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 355 LPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQL 413
               F  L  +  + L  N +  +L G  +    ++  + LSYN       +    +  L
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 414 SHLILGNNNLEG--EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNNS 467
             L+L    L+     P     L  L +LDLSNNN+  +     +       L   +NN 
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN- 515

Query: 468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH 527
                                  +   ++         F    LS L  L+L  N     
Sbjct: 516 -----------------------LARLWKHANPGGPIYFLKG-LSHLHILNLESNGFDEI 551

Query: 528 IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL-VELKEL 586
                 +L  ++ ++L  NNL  L  S F+N   ++SL+L  N +            + L
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611

Query: 587 AVFSVAYNNLSGEIP--EWKAQFA--TFNENSYEGNTFLCGLP 625
               + +N          W   +   T        + +LC  P
Sbjct: 612 TELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  246 bits (630), Expect = 3e-72
 Identities = 126/617 (20%), Positives = 208/617 (33%), Gaps = 95/617 (15%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
           T++ +L+++ NQL    +++     + +  L +  N     +  E       LK+    +
Sbjct: 25  TNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH 82

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           N ++    K+    T    L  L L S+                       +I       
Sbjct: 83  NELSQLSDKTFAFCT---NLTELHLMSN--------------------SIQKI------K 113

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI-LPRL 196
           N        L  L L ++ L+           +L+ L +SNN  Q     E+       L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVN--LEFLALSNNS 254
               +S N +    P  F  +  L  L L+N QL   + E L +   N  +  L+LSN+ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 255 LKG---HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 311
           L       F       NL  L L  N+       S +    LE  +L  N++       L
Sbjct: 234 LSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 312 GNLTWLIHIIMPKN---------HLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL 362
             L  + ++ + ++          L       F  L  L+ L++ DN+I G   + F  L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 363 -SITQVHLSKNMLHGQ-LKGGTFFNC--SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLIL 418
            ++  + LS +    + L   TF +   S L  L+L+ N ++    D    L  L  L L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 419 GNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNNSSSPDEQ 473
           G N +  E+  Q   GL  +  + LS N    L    F       +L        + D  
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 474 FKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG 533
                                                L  L+ LDLS N +       + 
Sbjct: 473 PSPFQP-------------------------------LRNLTILDLSNNNIANINDDMLE 501

Query: 534 NLTRIQTLNLSHNNLTGL--------IPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKE 585
            L +++ L+L HNNL  L               L  +  L+L  N  +        +L E
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 586 LAVFSVAYNNLSGEIPE 602
           L +  +  NNL+     
Sbjct: 562 LKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  246 bits (629), Expect = 5e-72
 Identities = 112/622 (18%), Positives = 184/622 (29%), Gaps = 117/622 (18%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +  NEL        A  T+L  L + SN +   I ++P     ++  L LS+N       
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSS-TK 137

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           L        L+     NN I               +L   + SS                
Sbjct: 138 LGTQVQLENLQELLLSNNKIQ---------ALKSEELDIFANSS---------------- 172

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG---PFRLPIHSHRHLRLLDVS 177
            L+ +  S  Q+    P        +L  L L N  L            ++  +R L +S
Sbjct: 173 -LKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 178 NNNFQGHIPVEIGDI-LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
           N+            +    L   ++S N L+     SF  +  L+   L  N +      
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 237 HLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGL 296
            L  G  N+ +L L  +                    +           S      LE L
Sbjct: 291 SLH-GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 297 YLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE--GPIPVEFCHLY--SLQILDISDNNIS 352
            + +N + G        L  L ++ +  +           F  L    L IL+++ N IS
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 353 GSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLS 411
                 F  L  +  + L  N +  +L G  +    ++  + LSYN       +    + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 412 QLSHLILGNNNLEG--EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSS 469
            L  L+L    L+     P     L  L +LDLSNNN+  +     +             
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG------------ 502

Query: 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKL----- 524
                                                    L  L  LDL  N L     
Sbjct: 503 -----------------------------------------LEKLEILDLQHNNLARLWK 521

Query: 525 ---IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV 581
               G     +  L+ +  LNL  N    +    F +L +++ +DL  N LN        
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 582 ELKELAVFSVAYNNLSGEIPEW 603
               L   ++  N ++    + 
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  192 bits (489), Expect = 1e-52
 Identities = 81/449 (18%), Positives = 139/449 (30%), Gaps = 100/449 (22%)

Query: 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQL 230
             + D S+      +P    D+   +   N++ N L     ++F   + L  LD+  N +
Sbjct: 6   HEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 231 TGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKC 290
           +   PE                             L  L+ L L+ N       ++ + C
Sbjct: 62  SKLEPELCQ-------------------------KLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNN 350
           ++L  L+L +NS+             LI + +  N L          L +LQ L +S+N 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 351 ISGSLPSCFHPL---SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI 407
           I              S+ ++ LS N +      G F     L  L L+   L  S+ + +
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 408 ---DGLSQLSHLILGNNNLEGEVPVQLCGLN--QLQLLDLSNNNLHGLIPPCFDNTKLHE 462
                 + + +L L N+ L         GL    L +LDLS NNL+ +    F       
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW----- 270

Query: 463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCN 522
                                                           L  L    L  N
Sbjct: 271 ------------------------------------------------LPQLEYFFLEYN 282

Query: 523 KLIGHIPPQVGNLTRIQTLNLSHNNLT---------GLIPSTFSNLKQIESLDLSYNKLN 573
            +       +  L  ++ LNL  +             +   +F  LK +E L++  N + 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 574 GKIPHQLVELKELAVFSVAYNNLSGEIPE 602
           G   +    L  L   S++ +  S     
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  162 bits (411), Expect = 3e-42
 Identities = 75/368 (20%), Positives = 122/368 (33%), Gaps = 87/368 (23%)

Query: 243 VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS 302
           V+ E    S+  L       +    N+  L L  N        + ++ S L  L +  N+
Sbjct: 4   VSHEVADCSHLKLTQ--VPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL 362
           +S   P     L  L  + +  N L       F    +L  L +  N+I     + F   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNN 422
                                    +L+TLDLS+N L+ +       L  L  L+L NN 
Sbjct: 121 K------------------------NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 423 LEG--EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSI 480
           ++      + +   + L+ L+LS+N +    P CF                         
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA----------------------- 193

Query: 481 KGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG---NLTR 537
                                         +  L GL L+  +L   +  ++      T 
Sbjct: 194 ------------------------------IGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 538 IQTLNLSHNNLTGLIPSTFSNLK--QIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
           I+ L+LS++ L+    +TF  LK   +  LDLSYN LN         L +L  F + YNN
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 596 LSGEIPEW 603
           +       
Sbjct: 284 IQHLFSHS 291

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  243 bits (622), Expect = 2e-71
 Identities = 85/618 (13%), Positives = 183/618 (29%), Gaps = 104/618 (16%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           L +   +  L +     +G +  + +  LT +E L+L ++   +   L            
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLF----------- 124

Query: 74  YADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
                     I+ + +      Q   +    ++ D      F     DL     +     
Sbjct: 125 ------GPKGISANMSDEQ--KQKMRMHYQKTFVDYDPREDFS----DLIKDCINSDPQQ 172

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLP--IHSHRHLRLLDVSNNNFQGHIPVEIGD 191
                       K  Q+  +++++     +   +     LR   + N+ F      E  +
Sbjct: 173 KSIKK-SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 192 ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251
                   N        +    + N+  L  +++ N     ++P  L      ++ + ++
Sbjct: 229 NE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVA 281

Query: 252 NNSLK--------GHMFSRNFNLINLRWLQLEGNHF-VGEIPQSLSKCSSLEGLYLNNNS 302
            N               +       ++ + +  N+     +  SL K   L  L    N 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL 362
           L GK+P   G+   L  + +  N +             ++ L  + N +   +P+ F   
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399

Query: 363 SITQ---VHLSKNMLHGQLKGG------TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQL 413
           S++    +  S N +             T F   ++ +++LS N ++    +     S L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 414 SHLILGNNNLEG-------EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---- 462
           S + L  N L         +          L  +DL  N L   +   F  T L      
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGI 518

Query: 463 --SYNN-SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDL 519
             SYN+ S  P +                  ++                    + +  D 
Sbjct: 519 DLSYNSFSKFPTQPLNS------------STLK-----------------GFGIRNQRDA 549

Query: 520 SCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ 579
             N+ +   P  +     +  L +  N++  +      N+     LD+  N         
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSY 606

Query: 580 LVELKELAVFSVAYNNLS 597
           +    E  ++ + Y+   
Sbjct: 607 VCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  215 bits (550), Expect = 3e-61
 Identities = 67/495 (13%), Positives = 149/495 (30%), Gaps = 73/495 (14%)

Query: 141 LENNTKLRQLSLVNDSLAGPF--RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLIS 198
           +  N    Q   +       F    P      L    ++++  Q  I      I  +   
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQ 187

Query: 199 FNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGH 258
                N +   +  +   +  L+   + N+    E        C   E            
Sbjct: 188 IGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKT 240

Query: 259 MFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL--------SGKIPRW 310
              +  NL +L  +++     + ++P  L     ++ + +  N            +    
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 311 LGNLTWLIHIIMPKNHL-EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHL 369
                 +  I +  N+L   P+      +  L +L+   N + G LP+    + +  ++L
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360

Query: 370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW--IDGLSQLSHLILGNNNLEG-- 425
           + N +   +          +  L  ++N L   IP+      +S +S +    N +    
Sbjct: 361 AYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 426 -----EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNN-SSSPDEQFK 475
                 +         +  ++LSNN +       F      + ++   N  +  P    K
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 476 ILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP--QVG 533
                  +                             LL+ +DL  NKL   +    +  
Sbjct: 479 DENENFKN---------------------------TYLLTSIDLRFNKLTK-LSDDFRAT 510

Query: 534 NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESL------DLSYNKLNGKIPHQLVELKELA 587
            L  +  ++LS+N+ +   P+   N   ++        D   N+   + P  +     L 
Sbjct: 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 588 VFSVAYNNLSGEIPE 602
              +  N++  ++ E
Sbjct: 570 QLQIGSNDIR-KVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  211 bits (540), Expect = 6e-60
 Identities = 59/470 (12%), Positives = 142/470 (30%), Gaps = 72/470 (15%)

Query: 165 IHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDG----SIPSSFGNMNLL 220
           ++S+  +  L +      G +P  IG  L  L    +  +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 221 QILDLSNNQLTGEIPEHLAMG-CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF 279
           +              ++       +L    ++++  +  +   +   +    +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 280 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLY 339
              + +++ + + L   Y+ N+    +            +             +++ +L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 340 SLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKG-------GTFFNCSSLVT 391
            L  +++ +      LP+    L  +  ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 392 LDLSYN-LLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
           + + YN L    +   +  + +L  L    N LEG++P       +L  L+L+ N +  +
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 451 IPPCFDN----TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
                        L  ++N                                    I  IF
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKY--------------------------------IPNIF 396

Query: 507 QGKVLSLLSGLDLSCNKL-------IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNL 559
             K +S++S +D S N++          + P       + ++NLS+N ++      FS  
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 560 KQIESLDLSYNKLNG-------KIPHQLVELKELAVFSVAYNNLSGEIPE 602
             + S++L  N L                    L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  179 bits (457), Expect = 1e-48
 Identities = 56/413 (13%), Positives = 122/413 (29%), Gaps = 85/413 (20%)

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG 257
           +FN  ++        S  +   +  L L     +G +P+ +      LE LAL ++  K 
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKV 119

Query: 258 HMFSRNF----NLINLRWLQLEGNHFVGEIPQSLSK--CSSLEGLYLNNNSLSGKIPRWL 311
           +            ++    Q    H+         +   S L    +N++     I +  
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 312 GNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSK 371
                   I    N++   +      L  L+   + ++                      
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI--------------- 223

Query: 372 NMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL 431
                         C +    +  Y     +     D L  L+ + + N     ++P  L
Sbjct: 224 --------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 432 CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKI 491
             L ++QL++++ N          D   L ++                            
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK----------------------- 306

Query: 492 QEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI-GHIPPQVGNLTRIQTLNLSHNNLTG 550
                                 +  + +  N L    +   +  + ++  L   +N L G
Sbjct: 307 ----------------------IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344

Query: 551 LIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEW 603
            +P+ F +  ++ SL+L+YN++     +     +++   S A+N L   IP  
Sbjct: 345 KLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (390), Expect = 1e-39
 Identities = 64/446 (14%), Positives = 120/446 (26%), Gaps = 99/446 (22%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISS-------SPLFYLTSIEELSLSNN 53
           + +      LP  L  +  +++++V+ N+              +       I+ + +  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 54  HF-HIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTF 112
           +    P+    L    +L +     N +  K+    +      +LASL+L+ +       
Sbjct: 316 NLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASLNLAYN------- 363

Query: 113 PKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHL 171
                          + I      P        ++  LS  ++ L   P      S   +
Sbjct: 364 -------------QITEI------PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 172 RLLDVSNNNFQGHIPVEIGDI------LPRLISFNISMNALDGSIPSSFGNMNLLQILDL 225
             +D S N            +         + S N+S N +       F   + L  ++L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 226 SNNQLTGEIPEHLAM------GCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNH 278
             N LT      L            L  + L  N L           L  L  + L  N 
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 279 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHL 338
           F  + P      S+L+G  + N                        N      P      
Sbjct: 525 F-SKFPTQPLNSSTLKGFGIRNQ------------------RDAQGNRTLREWPEGITLC 565

Query: 339 YSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
            SL  L I  N+I   +                                ++  LD+  N 
Sbjct: 566 PSLTQLQIGSNDIR-KVNEKI--------------------------TPNISVLDIKDNP 598

Query: 399 LNGSIPDWIDGLSQLSHLILGNNNLE 424
                  ++    +    +L  +  +
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQ 624

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  219 bits (560), Expect = 5e-66
 Identities = 80/362 (22%), Positives = 134/362 (37%), Gaps = 76/362 (20%)

Query: 282 EIPQSLSKCSSL----EGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG--PIPVEF 335
           +I + L   ++L          N +  G +         + ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 336 CHLYSLQILDISD-NNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDL 394
            +L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 395 SYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPC 454
           ++  ++G+IPD++  +  L  L    N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 455 FDN-----TKLHESYNNSSS--PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQ 507
           + +     T +  S N  +   P        ++                           
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPT----FANLN-------------------------- 198

Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
                 L+ +DLS N L G      G+    Q ++L+ N+L   +       K +  LDL
Sbjct: 199 ------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL 251

Query: 568 SYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP 627
             N++ G +P  L +LK L   +V++NNL GEIP+       F+ ++Y  N  LCG PLP
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

Query: 628 IC 629
            C
Sbjct: 311 AC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  208 bits (531), Expect = 8e-62
 Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 13/288 (4%)

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGS--IPSSFGNMNLLQILDLSN-NQL 230
            D  N  + G +         R+ + ++S   L     IPSS  N+  L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 231 TGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKC 290
            G IP  +A     L +L +++ ++ G +      +  L  L    N   G +P S+S  
Sbjct: 90  VGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLI-HIIMPKNHLEGPIPVEFCHLYSLQILDISDN 349
            +L G+  + N +SG IP   G+ + L   + + +N L G IP  F +L +L  +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 350 NISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID 408
            + G     F    +  ++HL+KN L   L  G      +L  LDL  N + G++P  + 
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 409 GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH--GLIPPC 454
            L  L  L +  NNL GE+P Q   L +  +   +NN       +P C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (484), Expect = 4e-55
 Identities = 83/355 (23%), Positives = 130/355 (36%), Gaps = 87/355 (24%)

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE--IPEHLAMGCVNLEFLALSNNSL 255
           + +       G +  +      +  LDLS   L     IP  LA                
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA---------------- 73

Query: 256 KGHMFSRNFNLINLRWLQLEG-NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 314
                    NL  L +L + G N+ VG IP +++K + L  LY+ + ++SG IP +L  +
Sbjct: 74  ---------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 315 TWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS--ITQVHLSKN 372
             L+ +    N L G +P     L +L  +    N ISG++P  +   S   T + +S+N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432
            L G++   TF N  +L  +DLS N+L G              + L  N+L  ++  ++ 
Sbjct: 185 RLTGKIP-PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241

Query: 433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQ 492
               L  LDL NN ++G +P                                        
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQ----------------------------------- 266

Query: 493 EFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547
                             L  L  L++S N L G I PQ GNL R      ++N 
Sbjct: 267 ------------------LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (388), Expect = 1e-41
 Identities = 71/360 (19%), Positives = 113/360 (31%), Gaps = 86/360 (23%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSP-LFYLTSIEELSLSN-NHFHIPIS 60
           +    G L         +  LD+S   L         L  L  +  L +   N+   PI 
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
              +   ++L   Y  +                                           
Sbjct: 95  PA-IAKLTQLHYLYITHT------------------------------------------ 111

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
                      ++G  P++ L     L  L    ++L+G     I S  +L  +    N 
Sbjct: 112 ----------NVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
             G IP   G       S  IS N L G IP +F N+N L  +DLS N L G+       
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF-- 217

Query: 241 GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN 300
                                   +  N + + L  N    ++   +    +L GL L N
Sbjct: 218 -----------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

Query: 301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNI--SGSLPSC 358
           N + G +P+ L  L +L  + +  N+L G IP    +L    +   ++N       LP+C
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 66/238 (27%)

Query: 2   ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTS-IEELSLSNNHF--HIP 58
           + N L G+LP  ++++ +L  +    N+++G+I  S     +     +++S N     IP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP 191

Query: 59  ISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYY 118
            +                                    LA + LS +             
Sbjct: 192 PTFA-------------------------------NLNLAFVDLSRN------------- 207

Query: 119 QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLP-IHSHRHLRLLDVS 177
                        + G+       ++   +++ L  +SLA    L  +   ++L  LD+ 
Sbjct: 208 ------------MLEGDASVLFG-SDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLR 252

Query: 178 NNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIP 235
           NN   G +P  +   L  L S N+S N L G IP   GN+    +   +NN+     P
Sbjct: 253 NNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 64/214 (29%)

Query: 1   MADNELRGSLPWCLANMTSL-RILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF--HI 57
              N + G++P    + + L   + +S N+LTG I  +    L ++  + LS N      
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLSRNMLEGDA 213

Query: 58  PISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLY 117
            +      +    +  +   N                                       
Sbjct: 214 SVL---FGSDKNTQKIHLAKN--------------------------------------- 231

Query: 118 YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVS 177
                         +  +     +  +  L  L L N+ + G     +   + L  L+VS
Sbjct: 232 -------------SLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 178 NNNFQGHIPVEIGDILPRLISFNISMNALDGSIP 211
            NN  G IP   G  L R      + N      P
Sbjct: 277 FNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSP 308

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  225 bits (576), Expect = 2e-63
 Identities = 80/607 (13%), Positives = 171/607 (28%), Gaps = 84/607 (13%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           L N   +  L ++     G +  + +  LT ++ LS   +   +   L      +   + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMS 376

Query: 74  YADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
               + I     K       +  L+ L   +   +    P     +  L+D     +   
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
             F +  ++  TKL+ +   N           +        +        +  +   + L
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSN-L 490

Query: 194 PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM--------GCVNL 245
             L    +        +P    ++  LQ L+++ N+                       +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 246 EFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304
           +   +  N+L+    S +   ++ L  L    N       ++      L  L L+ N + 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 305 GKIPRWLGNLTWLIHIIMPKNHLEG-PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
                +      +  +    N L+  P       +Y +  +D S N I     +    + 
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
                               +   +  T+ LSYN +     +     S +S +IL NN +
Sbjct: 669 D-------------------YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 424 E-------GEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-----TKLHESYNN-SSSP 470
                               L  +DL  N L  L            + +  SYN  SS P
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP 769

Query: 471 DEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP 530
            +                 +++                    +    D   N+++   P 
Sbjct: 770 TQPLNS------------SQLKA-----------------FGIRHQRDAEGNRILRQWPT 800

Query: 531 QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS 590
            +     +  L +  N++  +       L     LD++ N         +    E  ++ 
Sbjct: 801 GITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 591 VAYNNLS 597
           + Y+   
Sbjct: 858 LLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (532), Expect = 1e-57
 Identities = 80/542 (14%), Positives = 173/542 (31%), Gaps = 75/542 (13%)

Query: 96  QLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVND 155
           ++  LSL+     G   P  +    +L+ + F           +  E  T        + 
Sbjct: 324 RVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 156 SLAGPFRLPIHSHRHLRLLDVSNNNFQGH---IPVEIGDIL-PRLISFNISMNALDGSIP 211
                 ++ +   + L L D+  +    +    P++    +  +        N +   I 
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFIS 441

Query: 212 SSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW 271
            +   +  LQI+  +N+  T +         V+ E           +      NL +L  
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG---------KIPRWLGNLTWLIHIIM 322
           ++L     + ++P  L     L+ L +  N             ++         +    M
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 323 PKNHLEG-PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGG 381
             N+LE  P       +  L +LD   N +   L +    + +T + L  N +  ++   
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPED 613

Query: 382 TFFNCSSLVTLDLSYNLLNGSIPDW--IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQL 439
                  +  L  S+N L   IP+      +  +  +    N +  E     C ++  + 
Sbjct: 614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 440 -----LDLSNNNLHGLIPPCFDN----TKLHESYNN-SSSPDEQFKILFSIKGHQGHVEK 489
                + LS N +       F      + +  S N  +S P+   K       +      
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN------ 726

Query: 490 KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP--QVGNLTRIQTLNLSHNN 547
                                  LL+ +DL  NKL   +    +   L  +  +++S+N 
Sbjct: 727 ---------------------TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNC 764

Query: 548 LTGLIPSTFSNLKQIESLDLSY------NKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
            +   P+   N  Q+++  + +      N++  + P  +     L    +  N++  ++ 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD 822

Query: 602 EW 603
           E 
Sbjct: 823 EK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (492), Expect = 3e-52
 Identities = 68/565 (12%), Positives = 166/565 (29%), Gaps = 82/565 (14%)

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
             + I     ++ ++    F +    L+      +   +   Y  D + +      ++G 
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDG- 283

Query: 136 FPNWLLENNTKLRQLSLVN-------DSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVE 188
             NW   + T    +  +N       D       + + ++  +  L ++    +G +P  
Sbjct: 284 -KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 189 IGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL 248
           IG  L  L   +   ++   S            + +   +++     +        L   
Sbjct: 343 IGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 249 ALSNNSLKGH---MFSRNFNLINLRWLQLEGNH-FVGEIPQSLSKCSSLEGLYLNNNSLS 304
            L  +++  +      +  + I+L+  Q+      +  I +++ + + L+ +Y  N+  +
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT 461

Query: 305 GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-S 363
                         +             + + +L  L  +++ +      LP   + L  
Sbjct: 462 YDNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 364 ITQVHLSKNMLHGQLKG--------GTFFNCSSLVTLDLSYNLLNG-SIPDWIDGLSQLS 414
           +  ++++ N      +                 +    + YN L        +  + +L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK----LHESYNNSSSP 470
            L   +N +   +        +L  L L  N +  +       T     L  S+N     
Sbjct: 577 LLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY- 633

Query: 471 DEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP 530
                               I   F   +           + ++  +D S NK IG    
Sbjct: 634 --------------------IPNIFNAKS-----------VYVMGSVDFSYNK-IGSEGR 661

Query: 531 QVG------NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL-------NGKIP 577
            +             T+ LS+N +       F+    I ++ LS N +            
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 578 HQLVELKELAVFSVAYNNLSGEIPE 602
                   L    + +N L+  + +
Sbjct: 722 GNYKNTYLLTTIDLRFNKLT-SLSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  164 bits (417), Expect = 1e-42
 Identities = 61/426 (14%), Positives = 118/426 (27%), Gaps = 69/426 (16%)

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG 257
           +FN  ++           N   +  L L+     G +P+ +      L+ L+   +S   
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETV 361

Query: 258 HMFSRNFNLINLRWLQLEGNHFVGEIPQ-SLSKCSSLEGLYLNNNSLS-----GKIPRWL 311
                    +     +   +       +  L     L    L  ++++       I +  
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 312 GNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSK 371
                   I    N +   I      L  LQI+  +++  +                   
Sbjct: 422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI--------------- 465

Query: 372 NMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL 431
                                +  Y     +       L  L+ + L N     ++P  L
Sbjct: 466 --------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 432 CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKI 491
             L +LQ L+++ N          D T+L +  +                         I
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK---------------------I 550

Query: 492 QEFF----EFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547
           Q F+           +   Q   +  L  LD   NK+        G   ++  L L +N 
Sbjct: 551 QIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPH--QLVELKELAVFSVAYNNLSGEIPEWKA 605
           +  +     +   Q+E L  S+NKL   IP+      +  +     +YN +  E      
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 606 QFATFN 611
               + 
Sbjct: 666 SMDDYK 671

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (413), Expect = 5e-42
 Identities = 74/470 (15%), Positives = 145/470 (30%), Gaps = 61/470 (12%)

Query: 8   GSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNH 67
             +   +  +T L+I+  +++  T    +       S       N      +S   L   
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----EELSWSNL--- 490

Query: 68  SRLKIFYADNNPINAKITKS-HTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVH 126
             L      N P   ++    + L     +L SL+++ + G                 + 
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLP----ELQSLNIACNRGIS------------AAQLK 534

Query: 127 FSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNNNFQGHI 185
               ++  +      +   K++   +  ++L   P    +     L LLD  +N  + H+
Sbjct: 535 ADWTRLADDE-----DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL 588

Query: 186 PVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG-CVN 244
               G    +L    +  N ++          + ++ L  S+N+L   IP          
Sbjct: 589 E-AFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645

Query: 245 LEFLALSNNSLKGH-----MFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
           +  +  S N +            ++  IN   + L  N       +  +  S +  + L+
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 300 NNSLS-------GKIPRWLGNLTWLIHIIMPKNHLEG-PIPVEFCHLYSLQILDISDNNI 351
           NN ++               N   L  I +  N L           L  L  +D+S N  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

Query: 352 SGSLPSCFHPLS-------ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP 404
           S S P+     S         Q     N +  Q        C SL+ L +  N +   + 
Sbjct: 766 S-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIR-KVD 822

Query: 405 DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPC 454
           + +    QL  L + +N         +C   +  +  L  +     I  C
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  145 bits (367), Expect = 3e-36
 Identities = 67/413 (16%), Positives = 122/413 (29%), Gaps = 69/413 (16%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSP--------LFYLTSIEELSLSN 52
           + +      LP  L ++  L+ L+++ N+   +                   I+   +  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 53  NHFH-IPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVT 111
           N+    P S   L    +L +    +N    K+       T   +L  L L         
Sbjct: 558 NNLEEFPASAS-LQKMVKLGLLDCVHN----KVRHLEAFGTNV-KLTDLKLDY------- 604

Query: 112 FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRH 170
                           ++I+   E P        ++  L   ++ L   P      S   
Sbjct: 605 ----------------NQIE---EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 171 LRLLDVSNNNFQGHIPVEIGDILP-----RLISFNISMNALDGSIPSSFGNMNLLQILDL 225
           +  +D S N         I   +         +  +S N +       F   + +  + L
Sbjct: 646 MGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 226 SNNQLTGEIPEHLAM-------GCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGN 277
           SNN +T  IPE+              L  + L  N L           L  L  + +  N
Sbjct: 705 SNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

Query: 278 HFVGEIPQSLSKCSSLEGLYL------NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
            F    P      S L+   +        N +  + P  +     LI + +  N +   +
Sbjct: 764 CF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-V 821

Query: 332 PVEFCHLYSLQILDISDNNI-SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTF 383
             +      L ILDI+DN   S  + S    +      L  +     ++G   
Sbjct: 822 DEKLTP--QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGCDA 871

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  217 bits (555), Expect = 3e-62
 Identities = 110/621 (17%), Positives = 205/621 (33%), Gaps = 115/621 (18%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           ++ N LR    +   +   L++LD+S  ++      +    L+ +  L L+ N     ++
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQS-LA 92

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           L      S L+   A    +                                        
Sbjct: 93  LGAFSGLSSLQKLVAVETNLA--------------------------------------- 113

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSL-VNDSLAGPFRLPIHSHRHLRLLDVSNN 179
                            N+ + +   L++L++  N   +        +  +L  LD+S+N
Sbjct: 114 --------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 180 NFQGHIPVEIGDI---LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
             Q     ++  +       +S ++S+N ++   P +F  + L   L L NN  +  + +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL-HKLTLRNNFDSLNVMK 218

Query: 237 HLAMGCVNLEFLALSNNSLKGHM------FSRNFNLINLRWLQLEGNH---FVGEIPQSL 287
               G   LE   L     +          S    L NL   +    +   ++ +I    
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 288 SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS 347
           +  +++    L + ++               H+ +               L SL+ L  +
Sbjct: 279 NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFT 333

Query: 348 DNNISGSLPSCFHPLSITQVHLSKNMLHGQ-LKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406
            N    +      P S+  + LS+N L  +     + F  +SL  LDLS+N +   +   
Sbjct: 334 SNKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 407 IDGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLH 461
             GL QL HL   ++NL+          L  L  LD+S+ +        F+       L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC 521
            + N+                              F    +  IF    L  L+ LDLS 
Sbjct: 452 MAGNS------------------------------FQENFLPDIFTE--LRNLTFLDLSQ 479

Query: 522 NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV 581
            +L    P    +L+ +Q LN+SHNN   L    +  L  ++ LD S N +      +L 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 582 EL-KELAVFSVAYNNLSGEIP 601
                LA  ++  N+ +    
Sbjct: 540 HFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  213 bits (545), Expect = 7e-61
 Identities = 95/610 (15%), Positives = 171/610 (28%), Gaps = 111/610 (18%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +  N ++       + ++SL+ L      L    +   + +L +++EL++++N       
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKL 141

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
            E   N + L+     +N I   I  +      +  L +LSL  S           + + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSH---RHLRLLDVS 177
            L  +       +       ++    L    LV         L          L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 178 NNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEH 237
                                    ++     I   F  +  +    L +  +       
Sbjct: 261 EFRLA-------------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 238 LAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLY 297
                   + L L N         +  +L  L +   +G         S     SLE L 
Sbjct: 302 ---YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLD 353

Query: 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
           L+ N LS                       +G          SL+ LD+S N +     +
Sbjct: 354 LSRNGLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 358 CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
                 +  +    + L    +   F +  +L+ LD+S+     +     +GLS L  L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 418 LGNNNLEGEV-PVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKI 476
           +  N+ +    P     L  L  LDLS   L  L P  F++                   
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------- 492

Query: 477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT 536
                                             LS L  L++S N            L 
Sbjct: 493 ----------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 537 RIQTLNLSHNNLTGLIPSTFSNL-KQIESLDLSYNKLNGKIPHQ--LVELKELAVFSVAY 593
            +Q L+ S N++         +    +  L+L+ N       HQ  L  +K+     V  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 594 NNLSGEIPEW 603
             +    P  
Sbjct: 579 ERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  203 bits (519), Expect = 3e-57
 Identities = 84/469 (17%), Positives = 159/469 (33%), Gaps = 38/469 (8%)

Query: 153 VNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPS 212
                   +++P +     + LD+S N  +           P L   ++S   +      
Sbjct: 12  YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDG 70

Query: 213 SFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272
           ++ +++ L  L L+ N +        + G  +L+ L     +L         +L  L+ L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 273 QLEGNHFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWL----IHIIMPKNHL 327
            +  N     ++P+  S  ++LE L L++N +       L  L  +    + + +  N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCF----HPLSITQVHLSKNMLHGQLKGGTF 383
               P  F  +  L  L + +N  S ++          L + ++ L +    G L+    
Sbjct: 190 NFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 384 FNCSSLVTLDLSYNLLN------GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQL 437
                L  L +    L         I D  + L+ +S   L +  +E             
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW 306

Query: 438 QLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIK----GHQGHVEKKIQE 493
           Q L+L N            + K     +N          L S++       G   K    
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 494 FFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP 553
             +F T +            L  LDLS N +I  +      L +++ L+  H+NL  +  
Sbjct: 367 QSDFGTTS------------LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 554 -STFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP 601
            S F +L+ +  LD+S+             L  L V  +A N+      
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  156 bits (396), Expect = 1e-40
 Identities = 75/398 (18%), Positives = 129/398 (32%), Gaps = 32/398 (8%)

Query: 222 ILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVG 281
                      +IP++L     + + L LS N L+       F+   L+ L L       
Sbjct: 11  TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
               +    S L  L L  N +          L+ L  ++  + +L         HL +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 342 QILDISDNNI-SGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSL----VTLDLS 395
           + L+++ N I S  LP  F  L ++  + LS N +   +          +    ++LDLS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLS 185

Query: 396 YNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC-GLNQLQLLDLSNN------NLH 448
            N +N   P     +  L  L L NN     V      GL  L++  L         NL 
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 449 GLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQ 507
                  +    L       +  D     +  +     +V       F   +  I  +  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS-----FSLVSVTIERVKD 299

Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
                    L+L   K       ++ +L       L+  +  G    +  +L  +E LDL
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 568 SYNKLN--GKIPHQLVELKELAVFSVAYNNLSGEIPEW 603
           S N L+  G           L    +++N +      +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  212 bits (542), Expect = 2e-60
 Identities = 115/595 (19%), Positives = 200/595 (33%), Gaps = 80/595 (13%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
            S   L+ S N L  +I ++    L ++  L L+    +  I  +   +  RL       
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA 90

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           NP+      + +       L  L    +                      S I       
Sbjct: 91  NPLIFMAETALSGPK---ALKHLFFIQT--------------------GISSI------D 121

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRL- 196
              L N   L  L L ++ ++            L++LD  NN    ++  E    L +  
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQAT 180

Query: 197 -ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM-GCVNLEFLALSNNS 254
            +S N++ N +   I     +  + Q L+    Q    I + L      +L      +  
Sbjct: 181 NLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 255 LKG---HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 311
            +     +F     + ++  + L+ ++F      +    S L+ L L    LS ++P  L
Sbjct: 240 DEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297

Query: 312 GNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS-CFHPL-SITQVHL 369
             L+ L  +++  N  E    +   +  SL  L I  N     L + C   L ++ ++ L
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 370 SKNMLHG-QLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG-EV 427
           S + +           N S L +L+LSYN       +      QL  L L    L+  + 
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 428 PVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK----LHESYNNSSSPDEQFKILFSIKGH 483
                 L+ L++L+LS++ L       FD       L+   N+                 
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH----------------- 460

Query: 484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNL 543
                      F           Q   L  L  L LS   L         +L  +  ++L
Sbjct: 461 -----------FPKGNIQKTNSLQT--LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 544 SHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG 598
           SHN LT       S+LK I  L+L+ N ++  +P  L  L +    ++  N L  
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (514), Expect = 2e-56
 Identities = 88/467 (18%), Positives = 170/467 (36%), Gaps = 19/467 (4%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +  N L       L+   +L+ L      ++ SI   PL    ++E L L +NH    I 
Sbjct: 88  LTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IK 145

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           L   F   +LK+    NN I+        +++ + Q  +LSL+ +  D        +   
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHY--LSKEDMSSLQ-QATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 121 DLEDVHFSRIQMNGEFPNWLLENN-TKLRQLSLVNDSLAGPFRLPIHSHRHLRL--LDVS 177
             + ++F   Q        L  +    L   +  +                + +  +++ 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 178 NNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEH 237
            + F   I          L   +++   L   +PS    ++ L+ L LS N+    + + 
Sbjct: 263 KHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN-LCQI 319

Query: 238 LAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNH--FVGEIPQSLSKCSSLE 294
            A    +L  L++  N+ +  + +    NL NLR L L  +           L   S L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 295 GLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG-PIPVEFCHLYSLQILDISDNNISG 353
            L L+ N               L  + +    L+       F +L+ L++L++S + +  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 354 SLPSCFHPL-SITQVHLSKNMLHG--QLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGL 410
           S    F  L ++  ++L  N        K  +      L  L LS+  L+         L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 411 SQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457
             ++H+ L +N L       L  L  +  L+L++N++  ++P     
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPI 545

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (426), Expect = 1e-44
 Identities = 69/393 (17%), Positives = 124/393 (31%), Gaps = 58/393 (14%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGN 277
           +  +  N  L  EIP  L     + E L  S N L       FS    LINL +L L   
Sbjct: 15  KTYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFS---RLINLTFLDLTRC 67

Query: 278 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCH 337
                   +      L+ L L  N L       L     L H+   +  +     +   +
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 338 LYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSL--VTLDL 394
             +L+ L +  N+IS        P   +  +    N +H  L      +      ++L+L
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNL 186

Query: 395 SYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL--CGLNQLQLLDLSNNNLHGLIP 452
           + N +   I       +    L  G       +   L    +  L L    + +   + P
Sbjct: 187 NGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 453 PCFDN------TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
             F+         ++   +            F+I                      +  F
Sbjct: 246 AVFEGLCEMSVESINLQKHY----------FFNI---------------------SSNTF 274

Query: 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566
                S L  LDL+    +  +P  +  L+ ++ L LS N    L   + SN   +  L 
Sbjct: 275 HC--FSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 567 LSYNKLNGKI-PHQLVELKELAVFSVAYNNLSG 598
           +  N    ++    L  L+ L    ++++++  
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (254), Expect = 1e-22
 Identities = 60/354 (16%), Positives = 109/354 (30%), Gaps = 59/354 (16%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH-IPI 59
           ++ N+         +N  SL  L +  N     + +  L  L ++ EL LS++       
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 60  SLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQ 119
               L N S L+      N          +L T  F+                       
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPL-------SLKTEAFK----ECPQ--------------- 401

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
             LE +  +  ++  +      +N   L+ L+L +  L             L+ L++  N
Sbjct: 402 --LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
           +F                         +    +S   +  L+IL LS   L+  I +H  
Sbjct: 460 HFPK----------------------GNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAF 496

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
                +  + LS+N L         + +   +L L  NH    +P  L   S    + L 
Sbjct: 497 TSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555

Query: 300 NNSLSGKIPRWLGNLTWLIHIIMP-KNHLEGPIPVEFCHLYSLQILDISDNNIS 352
            N L         +  + +         LE        +   L+ + +SD  +S
Sbjct: 556 QNPLDCTC-----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 1e-19
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 54/243 (22%)

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
           +S   L+ S+N+L          L  L+ L L    +           ++L  L L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
           L  +                                                        
Sbjct: 93  LIFMAETALSG------------------------------------------------- 103

Query: 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566
                  L  L      +       + N   +++L L  N+++ +        ++++ LD
Sbjct: 104 ----PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 567 LSYNKLNGKIPHQLVELKELAVFSVAYNNLS-GEIPEWKAQFATFNENSYEGNTFLCGLP 625
              N ++      +  L++    S+  N      I       A F   ++ G   L  + 
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 626 LPI 628
             +
Sbjct: 220 KGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 3e-17
 Identities = 32/212 (15%), Positives = 54/212 (25%), Gaps = 56/212 (26%)

Query: 391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
           T +     LN  IP  +   +    L    N L          L  L  LDL+   ++ +
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 451 IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKV 510
               F +                                                     
Sbjct: 73  HEDTFQS----------------------------------------------------- 79

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
              L  L L+ N LI      +     ++ L      ++ +      N K +ESL L  N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
            ++     +    ++L V     N +     E
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (489), Expect = 4e-53
 Identities = 111/600 (18%), Positives = 202/600 (33%), Gaps = 93/600 (15%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
           +S + +D+S N L   + S      + ++ L LS       I  +       L       
Sbjct: 32  SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG 89

Query: 78  NPINAKITKS-HTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEF 136
           NPI +    S   LT     L +L    +                      + +      
Sbjct: 90  NPIQSFSPGSFSGLT----SLENLVAVET--------------------KLASL------ 119

Query: 137 PNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPR 195
            ++ +     L++L++ ++ +          +  +L  +D+S N  Q  I V     L  
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRE 178

Query: 196 L----ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251
                +S ++S+N +D     +F  + L   L L  N  +  I +        L    L 
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKL-HELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 252 NNSLKGHMFSRNFNL--------INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
               K       F          + +   +L   +   +        +++  + L   S+
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
                  +        + + +  L+         L  L+ L ++ N  S S      P S
Sbjct: 298 KYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKKVALP-S 351

Query: 364 ITQVHLSKNMLHGQLKG-GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNN 422
           ++ + LS+N L        +    +SL  LDLS+N     +     GL +L HL   ++ 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST 410

Query: 423 LEGEVPVQ-LCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNNSSSPDEQFKIL 477
           L+          L +L  LD+S  N        F        L  + N+           
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS----------- 459

Query: 478 FSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR 537
                              F    ++ +F     + L+ LDLS  +L          L R
Sbjct: 460 -------------------FKDNTLSNVFAN--TTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
           +Q LN+SHNNL  L  S ++ L  + +LD S+N++           K LA F++  N+++
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  180 bits (460), Expect = 4e-49
 Identities = 94/470 (20%), Positives = 155/470 (32%), Gaps = 26/470 (5%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +  N ++   P   + +TSL  L     +L  S+ S P+  L ++++L++++N  H    
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIH-SCK 144

Query: 61  LEPLFNH-SRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQ 119
           L   F++ + L       N I   IT +      +    +LSL  S           +  
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLR------- 172
             L ++       +       L+N   L    L+         L I     +        
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 173 -LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
               ++  N      V+    L  + + +++  ++              Q L +   QL 
Sbjct: 264 DEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK 320

Query: 232 GEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNH--FVGEIPQSLSK 289
                 L      L+ L L+ N        +   L +L +L L  N   F G    S   
Sbjct: 321 QFPTLDLP----FLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 290 CSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQILDISD 348
            +SL  L L+ N     +      L  L H+    + L+       F  L  L  LDIS 
Sbjct: 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 349 NNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI 407
            N        F  L S+  + ++ N          F N ++L  LDLS   L        
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457
           D L +L  L + +NNL          L  L  LD S N +          
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  173 bits (440), Expect = 2e-46
 Identities = 92/615 (14%), Positives = 164/615 (26%), Gaps = 155/615 (25%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
             E+          +  L  L ++ N +  S S      LTS+E L           S  
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLES-F 122

Query: 63  PLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDL 122
           P+     LK     +N                                            
Sbjct: 123 PIGQLITLKKLNVAHN-------------------------------------------- 138

Query: 123 EDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRLLDVSN 178
                   ++   F N      T L  + L  + +        +    + +    LD+S 
Sbjct: 139 ---FIHSCKLPAYFSNL-----TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 179 NNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
           N     I                           +F  +  L  L L  N  +  I +  
Sbjct: 191 NPID-FIQ------------------------DQAFQGIK-LHELTLRGNFNSSNIMKTC 224

Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNL--------INLRWLQLEGNHFVGEIPQSLSKC 290
                 L    L     K       F          + +   +L   +   +        
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNN 350
           +++  + L   S+       +        + + +  L+         L  L+ L ++ N 
Sbjct: 285 ANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNK 339

Query: 351 ISGSLPSCFHPLSITQVHLSKNMLHGQLKG-GTFFNCSSLVTLDLSYNLLNGSIPDWIDG 409
            S S      P S++ + LS+N L        +    +SL  LDLS+N     +     G
Sbjct: 340 GSISFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 410 LSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSS 468
           L +L HL   ++ L+          L +L  LD+S  N        F             
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------- 446

Query: 469 SPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHI 528
                                                     L+ L+ L ++ N    + 
Sbjct: 447 ------------------------------------------LTSLNTLKMAGNSFKDNT 464

Query: 529 PPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELA 587
              V  N T +  L+LS   L  +    F  L +++ L++S+N L         +L  L+
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 588 VFSVAYNNLSGEIPE 602
               ++N +      
Sbjct: 525 TLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 23/88 (26%), Positives = 36/88 (40%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
            S L  LDLS  ++          L  +  L L+ N +    P +FS L  +E+L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLSG 598
           KL       + +L  L   +VA+N +  
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 9e-12
 Identities = 18/86 (20%), Positives = 30/86 (34%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           +DLS N L         N + +Q L+LS   +  +    +  L  + +L L+ N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 577 PHQLVELKELAVFSVAYNNLSGEIPE 602
           P     L  L         L+     
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESF 122

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  176 bits (449), Expect = 1e-46
 Identities = 116/707 (16%), Positives = 216/707 (30%), Gaps = 115/707 (16%)

Query: 16  NMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYA 75
            + +   L +S N +  ++++S   +L  ++ L L + +  + I  E   N   L+I   
Sbjct: 22  VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
            ++ I                                                       
Sbjct: 81  GSSKIY-----------------------------------------------------F 87

Query: 136 FPNWLLENNTKLRQLSLVNDSLAGPF--RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
                 +    L +L L    L+          + + L  LD+S N  +          L
Sbjct: 88  LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 194 PRLISFNISMNALDGSIPSSFGNMNL--LQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251
             L S + S N +          +    L    L+ N L   +             + L 
Sbjct: 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207

Query: 252 NNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 311
              +       + N   +       N        SL     + G     +++        
Sbjct: 208 ILDV-------SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 312 GNLTW--LIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVH 368
             L    + H+ +    +       F  L  L++L+++ N I+      F+ L ++  ++
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 369 LSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP 428
           LS N+L  +L    F+    +  +DL  N +          L +L  L L +N L     
Sbjct: 321 LSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---- 375

Query: 429 VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVE 488
             +  +  +  + LS N L  L         +H S N   + D              H++
Sbjct: 376 -TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI-----LYFLLRVPHLQ 429

Query: 489 KKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKL----IGHIPPQV-GNLTRIQTLNL 543
             I     F++ +            L  L L  N L       +   V   L+ +Q L L
Sbjct: 430 ILILNQNRFSSCSGDQTPSE--NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 544 SHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEW 603
           +HN L  L P  FS+L  +  L L+ N+L     + L     L +  ++ N L    P+ 
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDV 545

Query: 604 KAQFATFNENSYEGNTFLCGLPLP--------------------ICRSPTTMSEASIENE 643
              F + +      N F+C   L                      C  P + S  S+ + 
Sbjct: 546 ---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602

Query: 644 RDDNLIDTDSF----FITFTTSYVIVIFGIVTVLYVNSYWRHRWFYF 686
             +   + +      F  F    V +   ++T+L V  +    +  +
Sbjct: 603 STEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  162 bits (411), Expect = 8e-42
 Identities = 93/499 (18%), Positives = 175/499 (35%), Gaps = 52/499 (10%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLT-GSISSSPLFYLTSIEELSLSNNHFHIPI 59
           +  +++    P     +  L  L +    L+   +       L ++  L LS N     +
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-L 138

Query: 60  SLEPLFNH-SRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYY 118
            L P F   + LK     +N I   + +          L+  SL+++         +   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 119 QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSN 178
            +   ++    +         +  N   +      +++++      +    H+       
Sbjct: 198 MNPFRNMVLEILD--------VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 179 NNFQGHIPVEI--GDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
           +N +         G     +   ++S   +       F  +  L++L+L+ N++  +I +
Sbjct: 250 HNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIAD 307

Query: 237 HLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSLSKCSSLEG 295
               G  NL+ L LS N L   ++S NF  L  + ++ L+ NH      Q+      L+ 
Sbjct: 308 EAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 296 LYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG---------------------PIPVE 334
           L L +N+L+      +  +  +  I +  N L                        I   
Sbjct: 367 LDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421

Query: 335 FCHLYSLQILDISDNNISGSLPSCF--HPLSITQVHLSKNMLHG----QLKGGTFFNCSS 388
              +  LQIL ++ N  S            S+ Q+ L +NML      +L    F   S 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 389 LVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
           L  L L++N LN   P     L+ L  L L +N L       L     L++LD+S N L 
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL 539

Query: 449 GLIPPCFDNTKLHESYNNS 467
              P  F +  + +  +N 
Sbjct: 540 APNPDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  140 bits (354), Expect = 1e-34
 Identities = 86/444 (19%), Positives = 142/444 (31%), Gaps = 93/444 (20%)

Query: 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
           R+      N    +P     +L       +S N +     SSF  +  LQ+L+L +    
Sbjct: 7   RIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 232 GEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCS 291
             I +       NL  L L ++               + +L           P +     
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSS--------------KIYFLH----------PDAFQGLF 97

Query: 292 SLEGLYLNNNSLSGKI--PRWLGNLTWLIHIIMPKNHLEG-PIPVEFCHLYSLQILDISD 348
            L  L L    LS  +    +  NL  L  + + KN +    +   F  L SL+ +D S 
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 349 NNISGSLPSCFHPL---SITQVHLSKNMLHGQLKGGTF-----FNCSSLVTLDLSYNLLN 400
           N I         PL   +++   L+ N L+ ++          F    L  LD+S N   
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 401 GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN--- 457
             I                +N +       L   + +       +N+       F     
Sbjct: 218 VDITG------------NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 458 ---TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLL 514
                L  S+            +FS+                      + +F+   L  L
Sbjct: 266 SSVRHLDLSHGF----------VFSLN---------------------SRVFET--LKDL 292

Query: 515 SGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
             L+L+ NK I  I  +    L  +Q LNLS+N L  L  S F  L ++  +DL  N + 
Sbjct: 293 KVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 574 GKIPHQLVELKELAVFSVAYNNLS 597
                    L++L    +  N L+
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 58/371 (15%), Positives = 104/371 (28%), Gaps = 95/371 (25%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +  N +          +  L+ LD+  N LT       + ++ SI ++ LS N       
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKL----- 393

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
                                       TL         + LS +  + +          
Sbjct: 394 ---------------------------VTLPKINLTANLIHLSENRLENLD--------- 417

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNN 179
                             + L     L+ L L  +  +          +  L  L +  N
Sbjct: 418 ----------------ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
             Q     E+                        F  ++ LQ+L L++N L   +P  + 
Sbjct: 462 MLQLAWETELC--------------------WDVFEGLSHLQVLYLNHNYLN-SLPPGVF 500

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
                L  L+L++N L   + S N    NL  L +  N  +   P       SL  L + 
Sbjct: 501 SHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDIT 555

Query: 300 NNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCF 359
           +N    +       L+  I+ +   N      P +   +Y      +S  ++S       
Sbjct: 556 HNKFICEC-----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEE 610

Query: 360 HPLSITQVHLS 370
             L   +  L 
Sbjct: 611 EVLKSLKFSLF 621

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (400), Expect = 3e-41
 Identities = 111/582 (19%), Positives = 202/582 (34%), Gaps = 104/582 (17%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
            S + LD+S N L   + S   F    ++ L LS       I      + S L       
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 78  NPINAKITKSHTLTTPKFQ----LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
           NPI        +L    F     L  L                           + +   
Sbjct: 86  NPI-------QSLALGAFSGLSSLQKLVAVE-----------------------TNLA-- 113

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLA-GPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
               N+ + +   L++L++ ++ +          +  +L  LD+S+N  Q  I      +
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171

Query: 193 LPRL----ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL 248
           L ++    +S ++S+N ++   P +F  +  L  L L NN  +  + +    G   LE  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 249 AL------SNNSLKGHMFSRNFNLINLRWLQLEGNH---FVGEIPQSLSKCSSLEGLYLN 299
            L      +  +L+    S    L NL   +    +   ++ +I    +  +++    L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 300 NNSLSGKIPR-WLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSC 358
           + ++       +      L  +                 L SL+ L  + N    +  S 
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGG-NAFSE 343

Query: 359 FHPLSITQVHLSKNMLHGQ-LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI 417
               S+  + LS+N L  +     + F  +SL  LDLS+N +  ++     GL QL HL 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402

Query: 418 LGNNNLEG-EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNNSSSPDE 472
             ++NL+          L  L  LD+S+ +        F+       L  + N+      
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS------ 456

Query: 473 QFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV 532
                              QE F      +  IF    L  L+ LDLS  + +  + P  
Sbjct: 457 ------------------FQENF------LPDIFTE--LRNLTFLDLSQCQ-LEQLSPTA 489

Query: 533 -GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
             +L+ +Q LN++ N L  +    F  L  ++ + L  N  +
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (384), Expect = 3e-39
 Identities = 84/461 (18%), Positives = 159/461 (34%), Gaps = 43/461 (9%)

Query: 175 DVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEI 234
                NF   IP    ++     + ++S N L      SF +   LQ+LDLS  ++   I
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 235 PEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCS 291
            +       +L  L L+ N ++      FS    L +L+ L     +        +    
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 292 SLEGLYLNNNSL-SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQI----LDI 346
           +L+ L + +N + S K+P +  NLT L H+ +  N ++     +   L+ + +    LD+
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSI--- 403
           S N ++   P  F  + + ++ L  N     +        + L    L            
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 404 ---PDWIDGLSQLSHLILGNNNLEG---EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457
                 ++GL  L+        L+    ++      L  +    L +  +  +    ++ 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTT-KNIAYI----------- 505
              H    N          L S+K        K    F      ++ ++           
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLK-RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 506 ---FQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQ 561
                    + L  LDLS N +I  +      L +++ L+  H+NL  +   S F +L+ 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 562 IESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
           +  LD+S+             L  L V  +A N+       
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (382), Expect = 7e-39
 Identities = 88/461 (19%), Positives = 166/461 (36%), Gaps = 25/461 (5%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +  N ++       + ++SL+ L      L  S+ + P+ +L +++EL++++N       
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFK 140

Query: 61  LEPLFNH-SRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQ 119
           L   F++ + L+     +N I   I  +      +  L +LSL  S           + +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLR------- 172
             L  +       +       ++    L    LV         L       L        
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 173 -LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
               ++  ++     +++ + L  + SF++    ++     S+      Q L+L N +  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFG 317

Query: 232 GEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGN--HFVGEIPQSLSK 289
                 L     +L+ L  ++N           +L +L +L L  N   F G   QS   
Sbjct: 318 QFPTLKL----KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 290 CSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG-PIPVEFCHLYSLQILDISD 348
            +SL+ L L+ N +   +      L  L H+    ++L+       F  L +L  LDIS 
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 349 NNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI 407
            +   +    F+ L S+  + ++ N          F    +L  LDLS   L    P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
           + LS L  L + +N L+         L  LQ + L  N   
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (319), Expect = 9e-31
 Identities = 74/434 (17%), Positives = 138/434 (31%), Gaps = 33/434 (7%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
             +  L     + + ++ +L+ L+V+ N +           LT++E L LS+N     I 
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IY 165

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYY-- 118
              L    ++ +     +     +         + +L  L+L +++         +    
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 119 ---QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSL---VNDSLAGPFRLPIHSHRHLR 172
               H L    F       +F    LE    L          D          +   ++ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 173 LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNL------------- 219
              + +   +             L   N            S   +               
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 220 ---LQILDLSNNQLTG-EIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQL 274
              L+ LDLS N L+          G  +L++L LS N +     S NF  L  L  L  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDF 403

Query: 275 EGNHFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPV 333
           + ++       S      +L  L +++             L+ L  + M  N  +     
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 334 E-FCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVT 391
           + F  L +L  LD+S   +    P+ F+ L S+  ++++ N L   +  G F   +SL  
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQK 522

Query: 392 LDLSYNLLNGSIPD 405
           + L  N  + S P 
Sbjct: 523 IWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 14/68 (20%), Positives = 26/68 (38%)

Query: 536 TRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
              + L+LS N L  L   +F +  +++ LDLS  ++          L  L+   +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 596 LSGEIPEW 603
           +       
Sbjct: 88  IQSLALGA 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  155 bits (392), Expect = 9e-41
 Identities = 72/401 (17%), Positives = 132/401 (32%), Gaps = 20/401 (4%)

Query: 188 EIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247
           EI     R     ++ ++L  ++ S   +   ++ LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 307
           L LS+N L         +L  LR L L  N+      Q L    S+E L+  NN++S   
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 308 PRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISG-SLPSCFHPL-SIT 365
                    +    +  N +     ++      +Q LD+  N I   +         ++ 
Sbjct: 116 CSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 366 QVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG 425
            ++L  N ++  +KG      + L TLDLS N L   +       + ++ + L NN L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 426 EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQG 485
            +   L     L+  DL  N  H      F +           +  +             
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 486 HVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSH 545
                     +      A           + L    ++    +  +  N  R + ++   
Sbjct: 288 LGHYGAYCCEDL-PAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALK 345

Query: 546 NNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKEL 586
                +I       +   +L+     L+ ++ +      EL
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (298), Expect = 2e-28
 Identities = 64/451 (14%), Positives = 124/451 (27%), Gaps = 47/451 (10%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
           LE+ + LR L L N+ +       +     +  L  +NNN    +    G     +    
Sbjct: 76  LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSRGQGKKNI---Y 126

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMF 260
           ++ N +        G  + +Q LDL  N++       LA     LE L L  N +     
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DV 184

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
                   L+ L L  N     +       + +  + L NN L                 
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL--------------- 228

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG 380
                     I        +L+  D+  N         F   +     ++K  +  +L G
Sbjct: 229 ----------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTG 277

Query: 381 GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG----EVPVQLCGLNQ 436
                C+                  + D L  L        + +G     +  +     +
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

Query: 437 LQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFE 496
            + +D        +I       +   +        ++        G + H E        
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN----GRRAHAELDGTLQQA 393

Query: 497 FTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF 556
                + +  + +   L     +       ++  Q      I+  ++  +  T L     
Sbjct: 394 VGQIELQHATE-EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENA 452

Query: 557 SNLKQIESLDLSYNKLNGKIPHQLVELKELA 587
              K     DL+    N  +   +V  + LA
Sbjct: 453 RLKKLNGEADLALASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (288), Expect = 3e-27
 Identities = 74/470 (15%), Positives = 158/470 (33%), Gaps = 33/470 (7%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
           D+ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L+LS+N  +      
Sbjct: 19  DSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY---ETL 74

Query: 63  PLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDL 122
            L + S L+    +NN     + +          + +L  +++    V+  +        
Sbjct: 75  DLESLSTLRTLDLNNN----YVQELLVGP----SIETLHAANNNISRVSCSRG----QGK 122

Query: 123 EDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNNNF 181
           ++++ +  ++     +      ++++ L L  + +    F     S   L  L++  N  
Sbjct: 123 KNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
              +  ++     +L + ++S N L   +   F +   +  + L NN+L   I + L   
Sbjct: 182 Y-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-F 235

Query: 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
             NLE   L  N        R+F   N R   +          Q+  +C+     +    
Sbjct: 236 SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 302 SLSGKIPRWLGNLTWLIHIIMPKNHLEG----PIPVEFCHLYSLQILDISDNNISGSLPS 357
                   +   L  L          +G     +  E  +    + +D         +  
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 358 CFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL 416
                 +   +   K  L  Q+  G      + +   L   +    +    +  S L  L
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNG--RRAHAELDGTLQQAVGQIELQHATEEQSPLQLL 412

Query: 417 I-LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYN 465
             +     E  V  Q    N ++  D+  +    L        KL+   +
Sbjct: 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (287), Expect = 4e-27
 Identities = 55/352 (15%), Positives = 112/352 (31%), Gaps = 57/352 (16%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           EI Q+ ++    +   + ++SL   +     +   +  + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           ++L++S N +           ++  + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN---- 457
            +           ++ L NN +     +     +++Q LDL  N +  +           
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 458 -TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516
              L+  YN                                    I  +    V + L  
Sbjct: 171 LEHLNLQYN-----------------------------------FIYDVKGQVVFAKLKT 195

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           LDLS NK +  + P+  +   +  ++L +N L   I       + +E  DL  N  +   
Sbjct: 196 LDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 577 PHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPI 628
                  K   V +VA   +  ++     +  T     + G      LP P 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (268), Expect = 1e-24
 Identities = 60/469 (12%), Positives = 131/469 (27%), Gaps = 77/469 (16%)

Query: 135 EFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILP 194
           +     L   TKL  L+L ++ L     L + S   LR LD++NN  Q  +      + P
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELL-----VGP 99

Query: 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254
            + + + + N +     S        + + L+NN++T  + +        +++L L  N 
Sbjct: 100 SIETLHAANNNISRVSCSRGQG---KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNE 155

Query: 255 LKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 313
           +    F+    +   L  L L+ N    ++   +   + L+ L L++N L+  +     +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 314 LTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNM 373
              +  I +  N L   I        +L+  D+  N         F   +     ++K  
Sbjct: 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 374 LHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG----EVPV 429
           +  +L G     C+                  + D L  L        + +G     +  
Sbjct: 272 VK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 430 QLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEK 489
           +     + + +D        +I                                      
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLR-------------------------------- 358

Query: 490 KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLT 549
                                      L+     L   +         +           
Sbjct: 359 ---------------------KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

Query: 550 GLIPSTFSNLKQIESLDLSYNKLNGK-IPHQLVELKELAVFSVAYNNLS 597
            L          ++ L     +     +  Q V+   +  + +  +  +
Sbjct: 398 EL-QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 8e-13
 Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 47/200 (23%)

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN---- 457
           +I +     ++     + +++L+  +         ++ LDLS N L  +           
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517
             L+ S N                         + E  +  +           LS L  L
Sbjct: 61  ELLNLSSN------------------------VLYETLDLES-----------LSTLRTL 85

Query: 518 DLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP 577
           DL+ N +      ++     I+TL+ ++NN++ +  S     K   ++ L+ NK+     
Sbjct: 86  DLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLRD 137

Query: 578 HQLVELKELAVFSVAYNNLS 597
                   +    +  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 33/281 (11%), Positives = 86/281 (30%), Gaps = 17/281 (6%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +A+N++           + ++ LD+  N++     +       ++E L+L  N  +    
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---D 183

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           ++     ++LK     +N +     +  +       +  +SL ++    V   K L +  
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA----GVTWISLRNN--KLVLIEKALRFSQ 237

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
           +LE         +          N +++ ++    ++               L       
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGS----IPSSFGNMNLLQILDLSNNQLTGEIPE 236
            +  +P    D L  L     ++ +  GS    +     N    + +D    Q    + +
Sbjct: 296 CE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVID 353

Query: 237 HLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGN 277
            + +       L     +L   + +       L     +  
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  155 bits (393), Expect = 2e-40
 Identities = 90/566 (15%), Positives = 178/566 (31%), Gaps = 91/566 (16%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
            +++ LD+S N++T  I    L    +++ L L ++  +  I  +  ++   L+     +
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           N ++                   SLSSS+   ++  K+L    +L    +  + +   FP
Sbjct: 84  NHLS-------------------SLSSSWFGPLSSLKYL----NLMGNPYQTLGVTSLFP 120

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI 197
           N                               +L+ L + N      I       L  L 
Sbjct: 121 NL-----------------------------TNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG 257
              I   +L      S  ++  +  L L  ++    + E  A    ++ +L L + +L  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 258 HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWL 317
             FS          ++           +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLN 264

Query: 318 IHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHG 376
                  +  +    +      +++ L I    +   L + +  L  + ++ +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 377 QLKGGTFFNCSSLVTLDLSYNLLNGSIPDW---IDGLSQLSHLILGNNNLE--GEVPVQL 431
            +      +  SL  LDLS NL+                L  L+L  N+L    +    L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 432 CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---SYNN-SSSPDEQFKILFSIKGHQGHV 487
             L  L  LD+S N  H +   C    K+     S            + L  +       
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS---- 439

Query: 488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547
              +  F  F  +             L  L +S NKL   +P        +  + +S N 
Sbjct: 440 NNNLDSFSLFLPR-------------LQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQ 484

Query: 548 LTGLIPSTFSNLKQIESLDLSYNKLN 573
           L  +    F  L  ++ + L  N  +
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  138 bits (349), Expect = 1e-34
 Identities = 66/398 (16%), Positives = 133/398 (33%), Gaps = 50/398 (12%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEG 276
             + D  +   T  IP  L      ++ L LS N    +            NL+ L L+ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKS 59

Query: 277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL-EGPIPVEF 335
           +        +     SLE L L++N LS     W G L+ L ++ +  N      +   F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
            +L +LQ L I +      +                           F   +SL  L++ 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRR-----------------------IDFAGLTSLNELEIK 156

Query: 396 YNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCF 455
              L       +  +  + HL L  +     + +    L+ ++ L+L + NL        
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 456 DNTKLHE-----SYNNSSSPDEQFKILFSIKGHQGHVEK------KIQEFFEFTTKNIAY 504
              ++       ++  S   DE F  L  +  +   + +       +    +F       
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 505 IFQGKVLSLLS--GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562
           + +   +  ++   L +    L   +      L +++ + + ++ +  +  S   +LK +
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336

Query: 563 ESLDLSYNKLNGKIPHQLVE---LKELAVFSVAYNNLS 597
           E LDLS N +  +             L    ++ N+L 
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (334), Expect = 7e-33
 Identities = 79/441 (17%), Positives = 158/441 (35%), Gaps = 30/441 (6%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           ++DN L          ++SL+ L++  N       +S    LT+++ L + N      I 
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYY-- 118
                  + L         +          +       +L LS S      F   L    
Sbjct: 141 RIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 119 QHDLEDVHFSRIQMNGEFPNWLLENNTKL--RQLSLVNDSLAGPFRLP--IHSHRHLRLL 174
             +L D + +R Q +    + +     KL  R   L ++S     +L   I     +   
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 175 DVSNNNFQGHIPVEIGDI-------LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSN 227
           D + N      P E   +          +   +I    L   + + +  +  ++ + + N
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 228 NQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEGNHF--VGE 282
           +++   +P   +    +LEFL LS N +        +      +L+ L L  NH   + +
Sbjct: 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 283 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQ 342
             + L    +L  L ++ N+    +P        +  + +    +     V+ C   +L+
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLE 434

Query: 343 ILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS 402
           +LD+S+NN+  S         + ++++S+N L   L   + F    L+ + +S N L   
Sbjct: 435 VLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDASLFP--VLLVMKISRNQLKSV 488

Query: 403 IPDWIDGLSQLSHLILGNNNL 423
                D L+ L  + L  N  
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (316), Expect = 2e-30
 Identities = 86/465 (18%), Positives = 169/465 (36%), Gaps = 34/465 (7%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +  + +         ++ SL  LD+S N L+ S+SSS    L+S++ L+L  N +   + 
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LG 114

Query: 61  LEPLFNH-SRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQ 119
           +  LF + + L+     N    ++I +          L  L + +         + L   
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQ-SQSLKSI 171

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
            D+  +     +          +  + +R L L + +LA     P+        +     
Sbjct: 172 RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
                +  E  + L +L+ + + ++ +       F +  L  + D + ++    + E   
Sbjct: 231 R-GSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDV-VSELGK 282

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
           +  V +  L +    L   + +    L  ++ + +E +              SLE L L+
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 300 NNSLSGKIPRW---LGNLTWLIHIIMPKNHLE--GPIPVEFCHLYSLQILDISDNNISGS 354
            N +  +  +     G    L  +++ +NHL            L +L  LDIS N     
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402

Query: 355 LPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC--SSLVTLDLSYNLLNGSIPDWIDGLSQ 412
             SC  P  +  ++LS   +           C   +L  LD+S N L+ S       L +
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR------VVKTCIPQTLEVLDVSNNNLD-SFS---LFLPR 452

Query: 413 LSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457
           L  L +  N L+  +P        L ++ +S N L  +    FD 
Sbjct: 453 LQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDR 495

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 43/261 (16%), Positives = 79/261 (30%), Gaps = 58/261 (22%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
           +  + D    + + S+PS     ++  + LS N +   +  G    C++L  L L  + +
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL-IPPCFDNT 458
           N    D    L  L HL L +N+L          L+ L+ L+L  N    L +   F N 
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN- 121

Query: 459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLD 518
                                                               L+ L  L 
Sbjct: 122 ----------------------------------------------------LTNLQTLR 129

Query: 519 LSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP 577
           +   +    I       LT +  L +   +L      +  +++ I  L L  ++    + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 578 HQLVELKELAVFSVAYNNLSG 598
                L  +    +   NL+ 
Sbjct: 190 IFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
            D         IP  +     +++L+LS N +T +          ++ L L  +++N   
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 577 PHQLVELKELAVFSVAYNNLSGEIPEW 603
                 L  L    ++ N+LS     W
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSW 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  150 bits (380), Expect = 3e-39
 Identities = 78/300 (26%), Positives = 133/300 (44%), Gaps = 10/300 (3%)

Query: 162 RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQ 221
            +P       RLLD+  N  +  +  +     P L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 222 ILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEGNH 278
            L L +N+L   IP  +  G  NL  L +S N    L  +MF    +L NL+ L++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 279 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHL 338
            V    ++ S  +SLE L L   +L+      L +L  LI + +   ++       F  L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 339 YSLQILDISDNNISGSL-PSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN 397
           Y L++L+IS      ++ P+C + L++T + ++   L   +      +   L  L+LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 398 LLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457
            ++      +  L +L  + L    L    P    GLN L++L++S N L  L    F +
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (361), Expect = 1e-36
 Identities = 70/407 (17%), Positives = 127/407 (31%), Gaps = 92/407 (22%)

Query: 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
           R +      F   +P     I       ++  N +       F +   L+ L+L+ N ++
Sbjct: 14  RAVLCHRKRFV-AVP---EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 232 GEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLS 288
             +         NL  L L +N LK     +F+    L NL  L +  N  V  +     
Sbjct: 70  -AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIVILLDYMFQ 125

Query: 289 KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD 348
              +L+ L + +N L   I                           F  L SL+ L +  
Sbjct: 126 DLYNLKSLEVGDNDLV-YIS-----------------------HRAFSGLNSLEQLTLEK 161

Query: 349 NNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI 407
            N++         L  +  + L    ++  ++  +F     L  L++S+     ++    
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNS 467
                L+ L + + NL     + +  L  L+ L+LS N +  +                 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---------- 270

Query: 468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH 527
                                                      L  L  + L   + +  
Sbjct: 271 -------------------------------------------LLRLQEIQLVGGQ-LAV 286

Query: 528 IPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
           + P     L  ++ LN+S N LT L  S F ++  +E+L L  N L 
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (351), Expect = 2e-35
 Identities = 68/383 (17%), Positives = 124/383 (32%), Gaps = 69/383 (18%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEGN 277
           + +     +    +PE +         L L  N   +L    F+   +  +L  L+L  N
Sbjct: 14  RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNEN 66

Query: 278 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCH 337
                 P + +   +L  L L +N L          L+ L  + + +N +   +   F  
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 338 LYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY 396
           LY+L+ L++ DN++       F  L S+ Q+ L K  L   +      +   L+ L L +
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 397 NLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFD 456
             +N         L +L  L + +      +         L  L +++ NL  +      
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

Query: 457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516
           +                                                     L  L  
Sbjct: 246 H-----------------------------------------------------LVYLRF 252

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
           L+LS N  I  I   +   L R+Q + L    L  + P  F  L  +  L++S N+L   
Sbjct: 253 LNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-T 310

Query: 576 IPHQLVE-LKELAVFSVAYNNLS 597
           +   +   +  L    +  N L+
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (293), Expect = 7e-28
 Identities = 63/291 (21%), Positives = 112/291 (38%), Gaps = 18/291 (6%)

Query: 141 LENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRL 196
             +   L +L L  + +     G F    ++  +LR L + +N  +  IP+ +   L  L
Sbjct: 52  FASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLRSNRLK-LIPLGVFTGLSNL 106

Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK 256
              +IS N +   +   F ++  L+ L++ +N L   I      G  +LE L L   +L 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

Query: 257 ---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 313
                  S   +L  L  L+L   +       S  +   L+ L +++      +      
Sbjct: 166 SIPTEALS---HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 314 LTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKN 372
              L  + +   +L     +   HL  L+ L++S N IS    S  H L  + ++ L   
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
            L   ++   F   + L  L++S N L          +  L  LIL +N L
Sbjct: 283 QLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (256), Expect = 3e-23
 Identities = 62/359 (17%), Positives = 122/359 (33%), Gaps = 58/359 (16%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
           T  R+LD+  N++  +++         +EEL L+ N     +      N   L+     +
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           N +  K+      T     L  L +S                        ++I       
Sbjct: 90  NRL--KLIPLGVFTGLS-NLTKLDISE-----------------------NKIV---ILL 120

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI 197
           +++ ++   L+ L + ++                 L+ +S+  F G         L  L 
Sbjct: 121 DYMFQDLYNLKSLEVGDN----------------DLVYISHRAFSG---------LNSLE 155

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG 257
              +    L      +  +++ L +L L +  +   I ++       L+ L +S+     
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 258 HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWL 317
            M       +NL  L +   +       ++     L  L L+ N +S      L  L  L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 318 IHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLH 375
             I +    L    P  F  L  L++L++S N ++    S FH + ++  + L  N L 
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 62/315 (19%), Positives = 115/315 (36%), Gaps = 55/315 (17%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           + +N +    P    N+ +LR L + SN+L   I       L+++ +L +S N       
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV---I 118

Query: 61  LEP-LFNH-SRLKIFYADNNPINAKITKSHTLTTPKFQ-LASLSLSSSYGDGVTFPKFLY 117
           L   +F     LK     +N +         ++   F  L SL             + L 
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDL-------VYISHRAFSGLNSL-------------EQL- 157

Query: 118 YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRL 173
               LE  + + I          L +   L  L L + ++       F+        L++
Sbjct: 158 ---TLEKCNLTSIPTE------ALSHLHGLIVLRLRHLNINAIRDYSFK----RLYRLKV 204

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPS-SFGNMNLLQILDLSNNQLTG 232
           L++S+  +   +          L S +I+   L  ++P  +  ++  L+ L+LS N ++ 
Sbjct: 205 LEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS- 261

Query: 233 EIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSK 289
            I   +    + L+ + L    L     + F     L  LR L + GN            
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR---GLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 290 CSSLEGLYLNNNSLS 304
             +LE L L++N L+
Sbjct: 319 VGNLETLILDSNPLA 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (365), Expect = 4e-38
 Identities = 75/421 (17%), Positives = 146/421 (34%), Gaps = 90/421 (21%)

Query: 185 IPVEIGDI-----LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
           +P  I  I     L   I   +   ++   +      +  +  L ++  ++     + + 
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIE 63

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
               NLE+L L+ N +     S   NL+ L  L +  N        +L   ++L  LYLN
Sbjct: 64  -YLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 300 NNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCF 359
            +++S   P  L NLT +  + +  NH    +     ++  L  L ++++ +    P   
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 360 HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG 419
                                    N + L +L L+YN +    P  +  L+ L +    
Sbjct: 173 -----------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---SYNNSSSPDEQFKI 476
            N +    P  +  + +L  L + NN +   + P  + ++L       N           
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTN----------- 253

Query: 477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT 536
                        +I +                 L+ L  L++  N+ I  I   + NL+
Sbjct: 254 -------------QISDINAVKD-----------LTKLKMLNVGSNQ-ISDISV-LNNLS 287

Query: 537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL 596
           ++ +L L++N L          L  + +L LS N +    P  L  L ++     A   +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

Query: 597 S 597
            
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (339), Expect = 1e-34
 Identities = 76/386 (19%), Positives = 135/386 (34%), Gaps = 63/386 (16%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF 279
              L      +    P+             L   S+          L ++  L + G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 280 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLY 339
                Q +   ++LE L LN N ++   P  L NL  L ++ +  N +         +L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLT 110

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
           +L+ L ++++NIS   P       +  ++L  N     L      N + L  L ++ + +
Sbjct: 111 NLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-- 457
               P  I  L+ L  L L  N +E   P  L  L  L       N +  + P    N  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 458 --TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS 515
               L    N                        KI +                 LS L+
Sbjct: 222 RLNSLKIGNN------------------------KITDLSPLAN-----------LSQLT 246

Query: 516 GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
            L++  N++       V +LT+++ LN+  N ++ +  S  +NL Q+ SL L+ N+L  +
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302

Query: 576 IPHQLVELKELAVFSVAYNNLSGEIP 601
               +  L  L    ++ N+++   P
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 3e-31
 Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 23/312 (7%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
            E    + +L +  + +A      I    +L  L+++ N      P+     L +L +  
Sbjct: 40  QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLY 94

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMF 260
           I  N +  +  S+  N+  L+ L L+ + ++   P         +  L L  N     + 
Sbjct: 95  IGTNKI--TDISALQNLTNLRELYLNEDNISDISPLA---NLTKMYSLNLGANHNLSDL- 148

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
           S   N+  L +L +  +      P  ++  + L  L LN N +    P  L +LT L + 
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG 380
               N +    P    ++  L  L I +N I+   P       +T + +  N +   +  
Sbjct: 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISD-INA 260

Query: 381 GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLL 440
               + + L  L++  N ++      ++ LSQL+ L L NN L  E    + GL  L  L
Sbjct: 261 --VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 441 DLSNNNLHGLIP 452
            LS N++  + P
Sbjct: 317 FLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (301), Expect = 1e-29
 Identities = 77/434 (17%), Positives = 152/434 (35%), Gaps = 106/434 (24%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
            A++       +    +T  +       L SI +L ++        S++ +   + L+  
Sbjct: 18  DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVA---SIQGIEYLTNLEYL 71

Query: 74  YADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
             + N    +IT    L+    +L +L + ++    ++                      
Sbjct: 72  NLNGN----QITDISPLSNLV-KLTNLYIGTNKITDISA--------------------- 105

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
                  L+N T LR+L L  D+++     P+ +   +  L++  N+             
Sbjct: 106 -------LQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNL----------- 145

Query: 194 PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN 253
                          S  S   NM  L  L ++ +++    P  +A    +L  L+L+ N
Sbjct: 146 ---------------SDLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLSLNYN 187

Query: 254 SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 313
            ++    S   +L +L +     N      P  ++  + L  L + NN ++   P  L N
Sbjct: 188 QIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241

Query: 314 LTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNM 373
           L+ L  + +  N +          L  L++L++  N IS  +                  
Sbjct: 242 LSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DISV---------------- 282

Query: 374 LHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCG 433
                      N S L +L L+ N L     + I GL+ L+ L L  N++    P  L  
Sbjct: 283 ---------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331

Query: 434 LNQLQLLDLSNNNL 447
           L+++   D +N  +
Sbjct: 332 LSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 5e-29
 Identities = 76/352 (21%), Positives = 129/352 (36%), Gaps = 34/352 (9%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           +    +   +      + S+  L V+  ++    S   + YLT++E L+L+ N       
Sbjct: 29  LQKASVTDVVT--QEELESITKLVVAGEKVA---SIQGIEYLTNLEYLNLNGNQIT---D 80

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           + PL N  +L   Y   N I   I+    LT     L  L L     D ++    L    
Sbjct: 81  ISPLSNLVKLTNLYIGTNKIT-DISALQNLT----NLRELYL---NEDNISDISPLANLT 132

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
            +  ++        +     L N T L  L++    +      PI +   L  L ++ N 
Sbjct: 133 KMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQ 188

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
            +   P+     L  L  F   +N +    P    NM  L  L + NN++T   P     
Sbjct: 189 IEDISPL---ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA--- 240

Query: 241 GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN 300
               L +L +  N +     +   +L  L+ L +  N         L+  S L  L+LNN
Sbjct: 241 NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352
           N L  +    +G LT L  + + +NH+    P     L  +   D ++  I 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 20/170 (11%)

Query: 433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQ 492
           G   L  L    N +        +  +      + +    Q ++            + I 
Sbjct: 1   GAATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVTQEEL------------ESIT 47

Query: 493 EFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLI 552
           +      + +A I   + L+ L  L+L+ N+ I  I P + NL ++  L +  N +T   
Sbjct: 48  K-LVVAGEKVASIQGIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKIT--D 102

Query: 553 PSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
            S   NL  +  L L+ + ++   P  L  L ++   ++  N+   ++  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 8e-36
 Identities = 104/450 (23%), Positives = 165/450 (36%), Gaps = 72/450 (16%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
                +  +  L   ++     +       +  L       +    VE    L  L   N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMF 260
            S N L    P    N+  L  + ++NNQ+    P  LA    NL  L L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA-NLTNLTGLTLFNNQITD--I 127

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
               NL NL  L+L  N        +LS  +SL+ L   N  ++   P  L NLT L  +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG 380
            +  N +          L +L+ L  ++N IS  +       ++ ++ L+ N    QLK 
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGN----QLKD 235

Query: 381 -GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQL 439
            GT  + ++L  LDL+ N ++   P  + GL++L+ L LG N +    P  L GL  L  
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 440 LDLSNNNLHGLIPPCFDNTKLHE---SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFE 496
           L+L+ N L   I P  +   L      +N                         I +   
Sbjct: 292 LELNENQLED-ISPISNLKNLTYLTLYFN------------------------NISDISP 326

Query: 497 FTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF 556
            ++           L+ L  L    NK+       + NLT I  L+  HN ++ L P   
Sbjct: 327 VSS-----------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 371

Query: 557 SNLKQIESLDLSYNKLNGKIPHQLVELKEL 586
           +NL +I  L L+         +    +   
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (350), Expect = 3e-35
 Identities = 90/440 (20%), Positives = 155/440 (35%), Gaps = 66/440 (15%)

Query: 164 PIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQIL 223
              +        +   N    +       L ++ +       +          +N L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 224 DLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEI 283
           + SNNQLT   P  L      L  + ++NN +     +   NL NL  L L  N      
Sbjct: 74  NFSNNQLTDITP--LK-NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128

Query: 284 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQI 343
           P  L   ++L  L L++N++S      L  LT L  +    N +    P    +L +L+ 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LANLTTLER 181

Query: 344 LDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS 402
           LDIS N +S    S    L ++  +  + N +   +        ++L  L L+ N L   
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISD-ITP--LGILTNLDELSLNGNQLKDI 236

Query: 403 IPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE 462
               +  L+ L+ L L NN +    P  L GL +L  L L  N +   I P    T L  
Sbjct: 237 GT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTN 291

Query: 463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCN 522
              N +                     ++++    +            L  L+ L L  N
Sbjct: 292 LELNEN---------------------QLEDISPISN-----------LKNLTYLTLYFN 319

Query: 523 KLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVE 582
            +    P  V +LT++Q L   +N ++ +     +NL  I  L   +N+++   P  L  
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LAN 373

Query: 583 LKELAVFSVAYNNLSGEIPE 602
           L  +    +     +     
Sbjct: 374 LTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (328), Expect = 2e-32
 Identities = 85/442 (19%), Positives = 161/442 (36%), Gaps = 49/442 (11%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
           +E    L Q++  N+ L      P+ +   L  + ++NN      P+     L  L    
Sbjct: 64  VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLAN---LTNLTGLT 118

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMF 260
           +  N +  +      N+  L  L+LS+N ++         G  +L+ L+  N        
Sbjct: 119 LFNNQI--TDIDPLKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFGNQVTDLKPL 173

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
           +   NL  L  L +  N         L+K ++LE L   NN +S   P  LG LT L  +
Sbjct: 174 A---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG 380
            +  N L+         L +L  LD+++N IS +L        +T++ L  N +   +  
Sbjct: 227 SLNGNQLKDIGT--LASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISN-ISP 282

Query: 381 GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLL 440
                 ++L  L+L+ N L    P  I  L  L++L L  NN+    P  +  L +LQ L
Sbjct: 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 441 DLSNNNLHGLIPPCFDNTKLHE---SYNN--SSSPDEQFKILFSIKGHQGHVEKKIQEFF 495
              NN +   +    + T ++     +N     +P      +  +  +          + 
Sbjct: 337 FFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYK 395

Query: 496 EFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPST 555
                          +S+ + +      LI   P  + +       +++ N  +     +
Sbjct: 396 -------------ANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNEVS 440

Query: 556 FSNLKQIESLDLSYNKLNGKIP 577
           +    Q  ++       +G + 
Sbjct: 441 Y-TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (325), Expect = 5e-32
 Identities = 94/448 (20%), Positives = 161/448 (35%), Gaps = 44/448 (9%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
              +  ++     ++  +  L      +    S   + YL ++ +++ SNN       + 
Sbjct: 33  KTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLT---DIT 84

Query: 63  PLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDL 122
           PL N ++L     +NN I   IT    LT     L  L+L ++    +T    L    +L
Sbjct: 85  PLKNLTKLVDILMNNNQIA-DITPLANLT----NLTGLTLFNNQ---ITDIDPLKNLTNL 136

Query: 123 EDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQ 182
             +  S   ++       L   T L+QLS  N         P+ +   L  LD+S+N   
Sbjct: 137 NRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVS 190

Query: 183 GHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGC 242
                 +   L  L S   + N +    P   G +  L  L L+ NQL       LA   
Sbjct: 191 D--ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA-SL 242

Query: 243 VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS 302
            NL  L L+NN +     +    L  L  L+L  N      P  L+  ++L  L LN N 
Sbjct: 243 TNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298

Query: 303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL 362
           L    P  + NL  L ++ +  N++    P     L  LQ L   +N +S  + S  +  
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVSSLANLT 353

Query: 363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNN 422
           +I  +    N +          N + +  L L+      +  ++   +S  + +      
Sbjct: 354 NINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

Query: 423 LEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
           L    P  +         D++ N     
Sbjct: 411 L--IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (316), Expect = 7e-31
 Identities = 90/451 (19%), Positives = 164/451 (36%), Gaps = 43/451 (9%)

Query: 19  SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNN 78
            L    ++ +     I       L    +  L   +    +S   L    ++    AD  
Sbjct: 2   PLGSATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRL 56

Query: 79  PINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPN 138
            I   I     L      L  ++ S++    +T    L     L D+  +  Q+    P 
Sbjct: 57  GIK-SIDGVEYLN----NLTQINFSNN---QLTDITPLKNLTKLVDILMNNNQIADITP- 107

Query: 139 WLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLIS 198
             L N T L  L+L N+ +      P+ +  +L  L++S+N       +     L  L  
Sbjct: 108 --LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQQ 160

Query: 199 FNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGH 258
            +      D        N+  L+ LD+S+N+++      LA    NLE L  +NN +   
Sbjct: 161 LSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQISD- 213

Query: 259 MFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLI 318
             +    L NL  L L GN        +L+  ++L  L L NN +S   P  L  LT L 
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 319 HIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL 378
            + +  N +    P     L +L  L++++N +   +    +  ++T + L  N +    
Sbjct: 269 ELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDI- 324

Query: 379 KGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQ 438
                 + + L  L    N ++      +  L+ ++ L  G+N +    P  L  L ++ 
Sbjct: 325 --SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 439 LLDLSNNNLHGLIPPCFDNTKLHESYNNSSS 469
            L L++            N  +  +  N + 
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (280), Expect = 4e-26
 Identities = 74/386 (19%), Positives = 130/386 (33%), Gaps = 87/386 (22%)

Query: 219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNH 278
           L       +  +     +             L   ++         +L  +  LQ +   
Sbjct: 3   LGSATITQDTPINQIFTDT---ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLG 57

Query: 279 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHL 338
              +    +   ++L  +  +NN L+   P  L NLT L+ I+M  N +    P    +L
Sbjct: 58  I--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 339 YSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
            +L  L + +N I+   P                            N ++L  L+LS N 
Sbjct: 112 TNLTGLTLFNNQITDIDP--------------------------LKNLTNLNRLELSSNT 145

Query: 399 LNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNT 458
           ++      + GL+ L  L  GN   + +    L  L  L+ LD+S+N +   I      T
Sbjct: 146 ISDISA--LSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSD-ISVLAKLT 199

Query: 459 KLHE---SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS 515
            L     + N                        +I +                 L+ L 
Sbjct: 200 NLESLIATNN------------------------QISDITPLGI-----------LTNLD 224

Query: 516 GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
            L L+ N+L       + +LT +  L+L++N ++ L P   S L ++  L L  N+++  
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 576 IPHQLVELKELAVFSVAYNNLSGEIP 601
            P  L  L  L    +  N L    P
Sbjct: 281 SP--LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 53/266 (19%), Positives = 92/266 (34%), Gaps = 55/266 (20%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
            L    I+ +     + +        +  L K  +   +   +  +   + TL      +
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGI 58

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-- 457
                D ++ L+ L+ +   NN L    P  L  L +L  + ++NN +  + P    N  
Sbjct: 59  --KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 458 --TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS 515
             T L    N       Q   +  +K                             L+ L+
Sbjct: 113 NLTGLTLFNN-------QITDIDPLKN----------------------------LTNLN 137

Query: 516 GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
            L+LS N +       +  LT +Q L+   N +T L P   +NL  +E LD+S NK++  
Sbjct: 138 RLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD- 191

Query: 576 IPHQLVELKELAVFSVAYNNLSGEIP 601
               L +L  L       N +S   P
Sbjct: 192 -ISVLAKLTNLESLIATNNQISDITP 216

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (344), Expect = 4e-35
 Identities = 84/386 (21%), Positives = 138/386 (35%), Gaps = 64/386 (16%)

Query: 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN-- 253
               +I M   D         +N  +I+   N+ +  ++P  L      +E L L++   
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 81

Query: 254 -SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 312
             +  + F+       ++ L +  N      P        L  L L  N LS        
Sbjct: 82  EEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138

Query: 313 NLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSK 371
           N   L  + M  N+LE  I  + F    SLQ L +S N ++    S    L     ++S 
Sbjct: 139 NTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHANVSY 195

Query: 372 NMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL 431
           N+L       T     ++  LD S+N +N  +        +L+ L L +NNL  +    L
Sbjct: 196 NLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-L 244

Query: 432 CGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNNSSSPDEQFKILFSIKGHQGHV 487
                L  +DLS N L  ++   F       +L+ S N   + +   + + +        
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------- 296

Query: 488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547
                                     L  LDLS N  + H+        R++ L L HN+
Sbjct: 297 --------------------------LKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329

Query: 548 LTGLIPSTFSNLKQIESLDLSYNKLN 573
           +  L  ST   LK   +L LS+N  +
Sbjct: 330 IVTLKLSTHHTLK---NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (344), Expect = 5e-35
 Identities = 65/325 (20%), Positives = 126/325 (38%), Gaps = 22/325 (6%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
           L+ +     + +   +    F     +  + +++   N+  +  +P  + D   ++   N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKG 257
           ++   ++     +F   + +Q L +  N +   +P H+      L  L L  N   SL  
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 258 HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWL 317
            +F    N   L  L +  N+       +    +SL+ L L++N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 318 IHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQ 377
            H  +  N L            +++ LD S N+I+         + +T + L  N L   
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT-- 239

Query: 378 LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQL 437
                  N   LV +DLSYN L   +      + +L  L + NN L   + +    +  L
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 438 QLLDLSNNNLHGLIPPCFDNTKLHE 462
           ++LDLS+N+L  +        +L  
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (295), Expect = 1e-28
 Identities = 62/318 (19%), Positives = 119/318 (37%), Gaps = 25/318 (7%)

Query: 283 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQ 342
           I  +L        ++++  +           L     +    + +             ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 343 ILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           +L+++D  I       F    +I ++++  N +   L    F N   L  L L  N L+ 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 402 SIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-TK 459
           S+P  I     +L+ L + NNNLE            LQ L LS+N L  +      +   
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDL 519
            + SYN  S+      +                E  + +  +I  + +G V   L+ L L
Sbjct: 191 ANVSYNLLSTLAIPIAV----------------EELDASHNSINVV-RGPVNVELTILKL 233

Query: 520 SCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ 579
             N L       + N   +  ++LS+N L  ++   F  ++++E L +S N+L   +   
Sbjct: 234 QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 580 LVELKELAVFSVAYNNLS 597
              +  L V  +++N+L 
Sbjct: 291 GQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (257), Expect = 1e-23
 Identities = 76/439 (17%), Positives = 149/439 (33%), Gaps = 101/439 (23%)

Query: 12  WCLANMTSLRILDVSSNQLTGSISSSPLF-YLTSIEELSLSNNHF-HIPISLEPLFNHSR 69
                       DV  +  T  +        L + + ++  N+    +P +L  L +  +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQ 70

Query: 70  LKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSR 129
           +++   ++  I                                        +++   F+ 
Sbjct: 71  VELLNLNDLQI---------------------------------------EEIDTYAFA- 90

Query: 130 IQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEI 189
                            +++L +  +++         +   L +L +  N+    +P  I
Sbjct: 91  -------------YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 136

Query: 190 GDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
               P+L + ++S N L+     +F     LQ L LS+N+LT  +   L     +L    
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLFHAN 192

Query: 250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
           +S N L     S     I +  L    N     +   +     L  L L +N+L+     
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA- 242

Query: 310 WLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHL 369
           WL N   L+ + +  N LE  +   F  +  L+ L IS+N +  +L     P+       
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI------- 294

Query: 370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPV 429
                             +L  LDLS+N L   +        +L +L L +N++     +
Sbjct: 295 -----------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TL 333

Query: 430 QLCGLNQLQLLDLSNNNLH 448
           +L   + L+ L LS+N+  
Sbjct: 334 KLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.7 bits (223), Expect = 3e-19
 Identities = 61/322 (18%), Positives = 125/322 (38%), Gaps = 34/322 (10%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
             ++ +R      L +   + +L+++  Q+   I +    Y  +I++L +  N     + 
Sbjct: 52  FKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LP 109

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKF----QLASLSLSSSYGDGVTFPKFL 116
                N   L +   + N ++       +L    F    +L +LS+S++  + +      
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS-------SLPRGIFHNTPKLTTLSMSNNNLERIE-DDTF 161

Query: 117 YYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDV 176
                L+++  S  ++       L+ +   L   ++  + L+      +     +  LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEELDA 212

Query: 177 SNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
           S+N+    +    G +   L    +  N L  +  +   N   L  +DLS N+L  +I  
Sbjct: 213 SHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMY 265

Query: 237 HLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSLSKCSSLEG 295
           H  +    LE L +SNN L     +     +  L+ L L  NH +  + ++  +   LE 
Sbjct: 266 HPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 296 LYLNNNSLSGKIPRWLGNLTWL 317
           LYL++NS+          L  L
Sbjct: 323 LYLDHNSIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 62/305 (20%), Positives = 109/305 (35%), Gaps = 53/305 (17%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           M  N +R   P    N+  L +L +  N L+ S+          +  LS+SNN+    I 
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IE 157

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
            +     + L+     +N                 +L  + LS         P       
Sbjct: 158 DDTFQATTSLQNLQLSSN-----------------RLTHVDLS-------LIPS------ 187

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
            L   + S   ++       L     + +L   ++S+     +    +  L +L + +NN
Sbjct: 188 -LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNN 237

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
                   +    P L+  ++S N L+  +   F  M  L+ L +SNN+L   +  +   
Sbjct: 238 LT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ- 292

Query: 241 GCVNLEFLALSNNSLKGHMFSRN-FNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
               L+ L LS+N L      RN      L  L L+ N  V  +  S     +L+ L L+
Sbjct: 293 PIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLS 347

Query: 300 NNSLS 304
           +N   
Sbjct: 348 HNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 52/278 (18%), Positives = 89/278 (32%), Gaps = 55/278 (19%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           M++N L           TSL+ L +SSN+LT       L  + S+   ++S N       
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNL------ 197

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ-LASLSLSSSYGDGVTFPKFLYYQ 119
           L  L     ++   A +N IN        +  P    L  L L                 
Sbjct: 198 LSTLAIPIAVEELDASHNSIN-------VVRGPVNVELTILKLQH--------------- 235

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
                   + +            N   L ++ L  + L      P    + L  L +SNN
Sbjct: 236 --------NNLTDTAWL-----LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
                + +     +P L   ++S N L   +  +    + L+ L L +N +   +     
Sbjct: 283 RLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST- 337

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGN 277
                L+ L LS+N       S      N+    ++  
Sbjct: 338 --HHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 39/201 (19%)

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN---- 457
            I   +        + +     +     +   LN  +++   N+ +  L     D+    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517
             L+ +             +  I                       Y F       +  L
Sbjct: 72  ELLNLNDLQ----------IEEID---------------------TYAFAY--AHTIQKL 98

Query: 518 DLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
            +  N  I ++PP V  N+  +  L L  N+L+ L    F N  ++ +L +S N L    
Sbjct: 99  YMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 577 PHQLVELKELAVFSVAYNNLS 597
                    L    ++ N L+
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT 178

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  134 bits (339), Expect = 7e-35
 Identities = 54/376 (14%), Positives = 100/376 (26%), Gaps = 79/376 (21%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFS-RNFNLI 267
                          D +                 N +    +  +LK       +    
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLEDATQP 81

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
               L+L       + P    + S L+ + ++   L  ++P  +     L  + + +N L
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCS 387
              +P     L  L+ L I        LP       +     S                 
Sbjct: 140 RA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDASGE----------HQGLV 183

Query: 388 SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNL 447
           +L +L L +  +  S+P  I  L  L  L + N+ L   +   +  L +L+ LDL     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQ 507
               PP F                                                    
Sbjct: 242 LRNYPPIFGG-------------------------------------------------- 251

Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
               + L  L L     +  +P  +  LT+++ L+L        +PS  + L     + +
Sbjct: 252 ---RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 568 SYNKLNGKIPHQLVEL 583
             +       H+ V  
Sbjct: 309 PPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 4e-29
 Identities = 56/323 (17%), Positives = 103/323 (31%), Gaps = 25/323 (7%)

Query: 165 IHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILD 224
            H       L    +         +     R  + + +             N N  QI  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 225 LSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIP 284
            +   L                 L L +  L      + F L +L+ + ++    + E+P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 285 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIM---------PKNHLEGPIPVEF 335
            ++ + + LE L L  N L   +P  + +L  L  + +         P+         E 
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDL 394
             L +LQ L +    I  SLP+    L ++  + +  + L          +   L  LDL
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDL 236

Query: 395 SYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPC 454
                  + P    G + L  LIL + +    +P+ +  L QL+ LDL        +P  
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 455 FDN----TKLHESYNNSSSPDEQ 473
                    +    +  +  D+ 
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (266), Expect = 3e-25
 Identities = 46/339 (13%), Positives = 87/339 (25%), Gaps = 78/339 (23%)

Query: 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324
           +      L  +G+  +      LS+         N    + +      N           
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 325 NHLEG-PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTF 383
             L+     +E         L++    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 384 FNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS 443
           F  S L  + +    L   +PD +   + L  L L  N L   +P  +  LN+L+ L + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIA 503
                  +P    +T     +                                       
Sbjct: 159 ACPELTELPEPLASTDASGEHQG------------------------------------- 181

Query: 504 YIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563
                  L  L  L L    +   +P  + NL  +++L + ++ L+ L      +L ++E
Sbjct: 182 -------LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLE 232

Query: 564 SLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
            LDL         P        L    +   +    +P 
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 21/224 (9%)

Query: 145 TKLRQLSLVNDSLAGPFRLP--IHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNIS 202
           + L+ +++    L     LP  +     L  L ++ N  +  +P  I   L RL   +I 
Sbjct: 104 SHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIR 158

Query: 203 MNALDGSIPSSFGNMNL---------LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN 253
                  +P    + +          LQ L L    +   +P  +A    NL+ L + N+
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNS 216

Query: 254 SLKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 312
            L          +L  L  L L G   +   P      + L+ L L + S    +P  + 
Sbjct: 217 PLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP 356
            LT L  + +        +P     L +  I+ +  +  +    
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 49/322 (15%), Positives = 94/322 (29%), Gaps = 56/322 (17%)

Query: 9   SLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISLEPLFNH 67
              W  AN  + +I   +   L  +              L L +      P   +  F  
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRL 103

Query: 68  SRLKIFYADNNPINAKITKS-HTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVH 126
           S L+    D   +  ++  +          L +L+L+ +       P  +   + L ++ 
Sbjct: 104 SHLQHMTIDAAGL-MELPDTMQQFA----GLETLTLARN--PLRALPASIASLNRLRELS 156

Query: 127 FSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIP 186
                   E P  L   +       LVN                L+ L +     +  +P
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVN----------------LQSLRLEWTGIR-SLP 199

Query: 187 VEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLE 246
             I + L  L S  I  + L  ++  +  ++  L+ LDL         P           
Sbjct: 200 ASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG------- 250

Query: 247 FLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK 306
                                 L+ L L+    +  +P  + + + LE L L       +
Sbjct: 251 ------------------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 307 IPRWLGNLTWLIHIIMPKNHLE 328
           +P  +  L     I++P +   
Sbjct: 293 LPSLIAQLPANCIILVPPHLQA 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  135 bits (341), Expect = 2e-33
 Identities = 82/392 (20%), Positives = 144/392 (36%), Gaps = 64/392 (16%)

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNL--LQILDLSNNQLTGEIPEHLAMGCVNLEFL 248
           ++    + +++ ++     +   F ++ L   +I+   N+ +  ++P  L      +E L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80

Query: 249 ALSNN---SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG 305
            L++     +  + F+       ++ L +  N      P        L  L L  N LS 
Sbjct: 81  NLNDLQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 306 KIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSIT 365
                  N   L  + M  N+LE      F    SLQ L +S N ++    S    L   
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--F 195

Query: 366 QVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG 425
             ++S N+L       T     ++  LD S+N +N  +        +L+ L L +NNL  
Sbjct: 196 HANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT- 245

Query: 426 EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNNSSSPDEQFKILFSIK 481
           +    L     L  +DLS N L  ++   F       +L+ S N   + +   + + +  
Sbjct: 246 DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-- 302

Query: 482 GHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTL 541
                                           L  LDLS N L+ H+        R++ L
Sbjct: 303 --------------------------------LKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 542 NLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
            L HN++  L  ST   LK   +L LS+N  +
Sbjct: 330 YLDHNSIVTLKLSTHHTLK---NLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (336), Expect = 6e-33
 Identities = 76/462 (16%), Positives = 162/462 (35%), Gaps = 41/462 (8%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
           L+ +     + +   +    F     +  + +++   N+  +  +P  + D   ++   N
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKG 257
           ++   ++     +F   + +Q L +  N +   +P H+      L  L L  N   SL  
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 258 HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTW- 316
            +F    N   L  L +  N+       +    +SL+ L L++N L+      + +L   
Sbjct: 141 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197

Query: 317 ---------------LIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHP 361
                          +  +    N +     V       L IL +  NN++       + 
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAWLLNY 253

Query: 362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN 421
             + +V LS N L  ++    F     L  L +S N L  ++  +   +  L  L L +N
Sbjct: 254 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 422 NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-TKLHESYN--NSSSPDEQFKILF 478
           +L   V       ++L+ L L +N++  L          L  S+N  + +S    F+ + 
Sbjct: 312 HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370

Query: 479 --SIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT 536
             ++     H +   Q       K     +  ++L  ++   +        +    G  +
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK-----VQRAQGRCS 425

Query: 537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPH 578
              T+N   +    +       L+  E L+   N+L  ++  
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 1e-29
 Identities = 64/411 (15%), Positives = 134/411 (32%), Gaps = 84/411 (20%)

Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA----MGCVNLEFLALSN 252
           +      N           + NL       +  +  +  +       +   N + +   N
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 253 NSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 309
           ++++     +     +   +  L L           + +   +++ LY+  N++   +P 
Sbjct: 61  STMRKLPAALLD---SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP 116

Query: 310 WLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVH 368
            +                       F ++  L +L +  N++S      FH    +T + 
Sbjct: 117 HV-----------------------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153

Query: 369 LSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP 428
           +S N L  +++  TF   +SL  L LS N L   +      +  L H  +  N L     
Sbjct: 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS---- 205

Query: 429 VQLCGLNQLQLLDLSNNNLHGLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHV 487
             L     ++ LD S+N+++ +  P     T L   +NN +                   
Sbjct: 206 -TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW--------------- 249

Query: 488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHN 546
                                     L  +DLS N+ +  I       + R++ L +S+N
Sbjct: 250 ------------------LLN--YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN 288

Query: 547 NLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
            L   +      +  ++ LDLS+N L   +     +   L    + +N++ 
Sbjct: 289 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (250), Expect = 3e-22
 Identities = 84/573 (14%), Positives = 169/573 (29%), Gaps = 116/573 (20%)

Query: 16  NMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYA 75
            + + +I+   ++ +   + ++ L     +E L+L++      I          ++  Y 
Sbjct: 49  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYM 106

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
             N I                     L       V           L  +   R  ++  
Sbjct: 107 GFNAIR-------------------YLPPHVFQNVP---------LLTVLVLERNDLS-S 137

Query: 136 FPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPR 195
            P  +  N  KL  LS+ N++L         +   L+ L +S+N    H+ +    ++P 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPS 193

Query: 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255
           L   N+S N L     S+      ++ LD S+N +   +   +    V L  L L +N+L
Sbjct: 194 LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNL 244

Query: 256 KGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 315
                +   N   L  + L  N     +     K   LE LY++NN L            
Sbjct: 245 T--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA---------- 292

Query: 316 WLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLH 375
                          + +    + +L++LD+S N++   +                    
Sbjct: 293 ---------------LNLYGQPIPTLKVLDLSHNHLL-HVER------------------ 318

Query: 376 GQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLN 435
                        L  L L +N +  ++   +     L +L L +N+ +       C   
Sbjct: 319 ------NQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-------CNSL 362

Query: 436 QLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF 495
           +    +++   +      C  + +L        S       L         VEK  +   
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422

Query: 496 EFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPST 555
             +  +     Q     +     +          P  GN      +N     +  L    
Sbjct: 423 RCSATDTINSVQSLSHYITQQGGV----------PLQGNEQLEAEVNELRAEVQQLTNEQ 472

Query: 556 FSNLKQIESLDLSYNKLNGKIPHQLVELKELAV 588
               + ++ L    +    +       L   + 
Sbjct: 473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  133 bits (336), Expect = 2e-33
 Identities = 91/433 (21%), Positives = 135/433 (31%), Gaps = 90/433 (20%)

Query: 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPS-SFGNMNLLQILDLSNN 228
           H+  +D+S N+    +       L  L    +        I + +F  ++ L IL L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 229 QLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF--NLINLRWLQLEGNHFVGEIPQS 286
           Q   ++      G  NLE L L+  +L G + S NF   L +L  L L  N+     P S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 287 L-SKCSSLEGLYLNNN-----------SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE 334
                     L L  N           +  GK    L  L+ +    M +  L       
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGN 207

Query: 335 FCHLYSLQILDISDNNISGSLPSCFHPL----SITQVHLSKNMLHGQ---------LKGG 381
                S+  LD+S N    S+   F        I  + LS +   G              
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 382 TFFN--CSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQ 438
           TF     S + T DLS + +  ++   +    + L  L L  N +         GL  L 
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 439 LLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFT 498
            L+LS N L  +    F+N                                         
Sbjct: 327 KLNLSQNFLGSIDSRMFEN----------------------------------------- 345

Query: 499 TKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFS 557
                       L  L  LDLS N  I  +  Q    L  ++ L L  N L  +    F 
Sbjct: 346 ------------LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 558 NLKQIESLDLSYN 570
            L  ++ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  130 bits (329), Expect = 1e-32
 Identities = 87/400 (21%), Positives = 143/400 (35%), Gaps = 72/400 (18%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLI 267
            +P+       +  +DLS N +  E+ E       +L+FL +   +    + +  F  L 
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL-SGKIPR-WLGNLTWLIHIIMPKN 325
           +L  L+L+ N F+     + +  ++LE L L   +L    +   +   LT L  +++  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 326 HLEGPIPVE-FCHLYSLQILDISDNNISGSLPSCFHPLSITQV---HLSKNMLH------ 375
           +++   P   F ++    +LD++ N +                    LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 376 -GQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGL---SQLSHLILGNNNLEGEVPVQL 431
            G  K G  F  +S+ TLDLS N    S+          +++  LIL N+          
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN------MG 253

Query: 432 CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKI 491
                    D  N    GL            S +           +F++           
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEAS--GVKTCDLSKSK----------IFALL---------- 291

Query: 492 QEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTG 550
                        +F     + L  L L+ N+ I  I       LT +  LNLS N L  
Sbjct: 292 -----------KSVFSH--FTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 551 LIPSTFSNLKQIESLDLSYNKLNGKIPHQ----LVELKEL 586
           +    F NL ++E LDLSYN +   +  Q    L  LKEL
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (285), Expect = 5e-27
 Identities = 69/356 (19%), Positives = 125/356 (35%), Gaps = 39/356 (10%)

Query: 135 EFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSH-RHLRLLDVSNNNFQGHIPVEIGDIL 193
           E           L+ L +   +     R         L +L +  N F   +     + L
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGL 102

Query: 194 PRLISFNISMNALDGSI--PSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251
             L    ++   LDG++   + F  +  L++L L +N +    P    +       L L+
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 252 NN---SLKGHMFSRNFNLINLRWLQLEGNH--------FVGEIPQSLSKCSSLEGLYLNN 300
            N   S+       NF   +   L+L               E   +  K +S+  L L+ 
Sbjct: 163 FNKVKSICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 301 NSLSGKIPRWLGNLTWLIHII-------------MPKNHLEGPIPVEFCHLY--SLQILD 345
           N     + +   +      I                  + + P    F  L    ++  D
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 346 ISDNNISGSLPSC-FHPLSITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSI 403
           +S + I  +L    F   +  +   L++N ++ ++    F+  + L+ L+LS N L GSI
Sbjct: 282 LSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSI 338

Query: 404 PDWI-DGLSQLSHLILGNNNLEGEVPVQL-CGLNQLQLLDLSNNNLHGLIPPCFDN 457
              + + L +L  L L  N++   +  Q   GL  L+ L L  N L  +    FD 
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 6e-22
 Identities = 80/431 (18%), Positives = 138/431 (32%), Gaps = 72/431 (16%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
            N +        + +  L+ L V        I ++    L+S+  L L  N F     LE
Sbjct: 39  LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLE 95

Query: 63  P-LFNH-SRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
              FN  + L++                        L    LS ++   +T  + L    
Sbjct: 96  TGAFNGLANLEVLTLTQC-----------------NLDGAVLSGNFFKPLTSLEMLV--- 135

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG--PFRLPIHSHRHLRLLDVSN 178
            L D +  +IQ    F N       +   L L  + +       L     +H  LL +S+
Sbjct: 136 -LRDNNIKKIQPASFFLNM-----RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 179 NNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
              Q                 +++   L      +      +  LDLS N     + +  
Sbjct: 190 ITLQ-----------------DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 239 AMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL 298
                  +  +L  ++      S             +   F G       + S ++   L
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFK----DPDNFTFKG------LEASGVKTCDL 282

Query: 299 NNN---SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSL 355
           + +   +L   +     +L  L    + +N +       F  L  L  L++S N +  S+
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQL---TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SI 338

Query: 356 PSC-FHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQ 412
            S  F  L  +  + LS N +   L   +F    +L  L L  N L  S+PD I D L+ 
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTS 396

Query: 413 LSHLILGNNNL 423
           L  + L  N  
Sbjct: 397 LQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 77/362 (21%), Positives = 130/362 (35%), Gaps = 44/362 (12%)

Query: 122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSL----AGPF-RLPIHSHRHLRLLDV 176
           L+ +   +        N      + L  L L  +       G F  L      +L +L +
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-----NLEVLTL 110

Query: 177 SNNNFQGH-IPVEIGDILPRLISFNISMNALDGSIPSS-FGNMNLLQILDLSNNQLTGEI 234
           +  N  G  +       L  L    +  N +    P+S F NM    +LDL+ N++   I
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SI 169

Query: 235 PEHLAMGCVNLEFLALSNNSLKGHMFSRN----------FNLINLRWLQLEGNHFVGEIP 284
            E   +      F  L  +S+     +            F   ++  L L GN F   + 
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 285 Q---SLSKCSSLEGLYLNNN-----SLSGKIPRWLGNLTW-------LIHIIMPKNHLEG 329
           +        + ++ L L+N+     S      +   N T+       +    + K+ +  
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289

Query: 330 PIPVEFCHLYSLQILDISDNNISGSLPS-CFHPL-SITQVHLSKNMLHGQLKGGTFFNCS 387
            +   F H   L+ L ++ N I+  +    F  L  + +++LS+N L G +    F N  
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLD 347

Query: 388 SLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
            L  LDLSYN +  ++ D    GL  L  L L  N L+         L  LQ + L  N 
Sbjct: 348 KLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

Query: 447 LH 448
             
Sbjct: 407 WD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 55/283 (19%), Positives = 89/283 (31%), Gaps = 74/283 (26%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           M +  L           TS+  LD+S N    S++      +   +  SL  ++ +   S
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
                                         +            +  G   +  K      
Sbjct: 255 ------------------------------SFGHTNFKDPDNFTFKGLEASGVKTC---- 280

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
           DL       +         +  + T L QL+L                        + N 
Sbjct: 281 DLSKSKIFAL------LKSVFSHFTDLEQLTL------------------------AQNE 310

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPS-SFGNMNLLQILDLSNNQLTGEIPEHLA 239
               I       L  L+  N+S N L GSI S  F N++ L++LDLS N +   + +   
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSF 367

Query: 240 MGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEGNHF 279
           +G  NL+ LAL  N LK     +F     L +L+ + L  N +
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (322), Expect = 9e-33
 Identities = 63/284 (22%), Positives = 108/284 (38%), Gaps = 20/284 (7%)

Query: 188 EIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247
           EI     R     ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 307
           L LS+N L  +      +L  LR L L  N+      Q L    S+E L+  NN++S   
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 308 PRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISG-SLPSCFHPL-SIT 365
                    +    +  N +     ++      +Q LD+  N I   +         ++ 
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 366 QVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG 425
            ++L  N ++  +KG      + L TLDLS N L   +       + ++ + L NN L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 426 EVPVQLCGLNQLQLLDLSNNNLHGLIPPCF--DNTKLHESYNNS 467
            +   L     L+  DL  N  H      F   N ++      +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (294), Expect = 5e-29
 Identities = 56/365 (15%), Positives = 113/365 (30%), Gaps = 57/365 (15%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           EI Q+ +     +   + ++SL   +     +   +  + +  N L      +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           ++L++S N +           ++  + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN---- 457
            +           ++ L NN +     +     +++Q LDL  N +  +           
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 458 -TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516
              L+  YN                                    I  +    V + L  
Sbjct: 171 LEHLNLQYN-----------------------------------FIYDVKGQVVFAKLKT 195

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           LDLS NKL   + P+  +   +  ++L +N L   I       + +E  DL  N  +   
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC-G 252

Query: 577 PHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMS 636
             +    K   V +VA   +  ++     +  T     + G      LP P       + 
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

Query: 637 EASIE 641
                
Sbjct: 312 HHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 55/332 (16%), Positives = 117/332 (35%), Gaps = 55/332 (16%)

Query: 16  NMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYA 75
           N    +I  V+ + L     +S      +++EL LS N     IS   L   ++L++   
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNL 65

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
            +N +  +     +L+     L +L L++                               
Sbjct: 66  SSNVLY-ETLDLESLS----TLRTLDLNN------------------------------- 89

Query: 136 FPNWL--LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
             N++  L     +  L   N++++   R+     +  + + ++NN       ++ G   
Sbjct: 90  --NYVQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGC-R 143

Query: 194 PRLISFNISMNALDG-SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
            R+   ++ +N +D  +      + + L+ L+L  N +  ++   +      L+ L LS+
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSS 200

Query: 253 NSLKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIPRW 310
           N L        F +   + W+ L  N  V  I ++L    +LE   L  N    G +  +
Sbjct: 201 NKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQ 342
                 +  +             E C + +L 
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 47/276 (17%), Positives = 79/276 (28%), Gaps = 38/276 (13%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
           LE+ + LR L L N+ +       +     +  L  +NNN    +    G     +    
Sbjct: 76  LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSRGQGKKNI---Y 126

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMF 260
           ++ N +        G  + +Q LDL  N++       LA     LE L L  N +     
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DV 184

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
                   L+ L L  N     +       + +  + L NN L                 
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL--------------- 228

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG 380
                     I        +L+  D+  N         F   +     ++K  +  +L G
Sbjct: 229 ----------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTG 277

Query: 381 GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL 416
                C+                  + D L  L H 
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 47/200 (23%)

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN---- 457
           +I +     ++     + +++L+  +         ++ LDLS N L  +           
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517
             L+ S N                         + E  +  +           LS L  L
Sbjct: 61  ELLNLSSN------------------------VLYETLDLES-----------LSTLRTL 85

Query: 518 DLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP 577
           DL+ N +      ++     I+TL+ ++NN++ +  S     K   ++ L+ NK+     
Sbjct: 86  DLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLRD 137

Query: 578 HQLVELKELAVFSVAYNNLS 597
                   +    +  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEID 157

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 1e-30
 Identities = 92/440 (20%), Positives = 154/440 (35%), Gaps = 57/440 (12%)

Query: 167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLS 226
           S+  L+     ++N    +PVE  + +     +  + +  + + P   G    + +  L 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQS 286
           +                    L L+N  L     S      +L  L    N    E+P+ 
Sbjct: 67  DCLDR------------QAHELELNNLGLS----SLPELPPHLESLVASCNSLT-ELPEL 109

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
                SL     N  +LS   P        L ++ +  N LE  +P E  +   L+I+D+
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160

Query: 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406
            +N++   LP    P S+  +    N L    +     N   L  +    N L   +PD 
Sbjct: 161 DNNSLK-KLPDL--PPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLK-KLPD- 212

Query: 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN 466
                 L  ++ GNN LE     +L  L  L  +   NN L  L         L+   N 
Sbjct: 213 --LPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 268

Query: 467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG---LDLSCNK 523
            +   E  + L  +   +       +        N +      +  L      L++S NK
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328

Query: 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL 583
           LI  +P     L   + L  S N+L  + P    NLK    L + YN L  + P     +
Sbjct: 329 LI-ELPALPPRL---ERLIASFNHLAEV-PELPQNLK---QLHVEYNPLR-EFPDIPESV 379

Query: 584 KELAVFSVAYNNLSGEIPEW 603
           ++L +     N+   E+PE 
Sbjct: 380 EDLRM-----NSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (299), Expect = 1e-28
 Identities = 94/447 (21%), Positives = 157/447 (35%), Gaps = 80/447 (17%)

Query: 144 NTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISM 203
           + +  +L L N  L+    LP     HL  L  S N+    +P      L  L+  N ++
Sbjct: 70  DRQAHELELNNLGLS---SLP-ELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 204 NALDGSIPS---------------SFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL 248
            AL    P                   N + L+I+D+ NN L  ++P+       +LEF+
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 249 ALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP 308
           A  NN L+        NL  L  +  + N    ++P       SLE +   NN L     
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE--EL 230

Query: 309 RWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQV 367
             L NL +L  I    N L+  +P       SL+ L++ DN ++  LP     L  +   
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 368 HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV 427
               + L             +L  L+ S N +  S+ D       L  L + NN L  E+
Sbjct: 286 ENIFSGLSELPP--------NLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKLI-EL 332

Query: 428 PVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGH 486
           P       +L+ L  S N+L  + P    N  +LH  YN      +  + +  ++ +   
Sbjct: 333 PALPP---RLERLIASFNHLAEV-PELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS-- 386

Query: 487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN 546
               + E  E                 L  L +  N L    P    ++     L ++  
Sbjct: 387 ---HLAEVPELPQN-------------LKQLHVETNPLR-EFPDIPESVED---LRMNSE 426

Query: 547 NLTGLIPSTFSNLKQIESLDLSYNKLN 573
            +            ++E     ++  +
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (265), Expect = 2e-24
 Identities = 90/448 (20%), Positives = 149/448 (33%), Gaps = 92/448 (20%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
            + N L   LP    ++ SL + + +   L+             +E L +SNN       
Sbjct: 98  ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQL---EK 145

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           L  L N S LKI   DNN +                                P       
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-----------------------------KLPDLP---P 173

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
            LE +     Q+  E P   L+N   L  +   N+SL     LP      L  +   NN 
Sbjct: 174 SLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNI 226

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
                  E+ + LP L +     N L  ++P    +   L+ L++ +N LT ++PE    
Sbjct: 227 L--EELPELQN-LPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ- 277

Query: 241 GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN 300
              +L FL +S N         +    NL +L    N     +        SLE L ++N
Sbjct: 278 ---SLTFLDVSENIFS----GLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSN 326

Query: 301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH 360
           N L  ++P     L  LI      NHL   +P       +L+ L +  N +    P    
Sbjct: 327 NKLI-ELPALPPRLERLI---ASFNHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPE 377

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
            +   +++     +             +L  L +  N L    PD       +  L + +
Sbjct: 378 SVEDLRMNSHLAEV--------PELPQNLKQLHVETNPLR-EFPDIP---ESVEDLRMNS 425

Query: 421 NNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
             +           ++L+     +++ H
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 3e-21
 Identities = 67/394 (17%), Positives = 120/394 (30%), Gaps = 102/394 (25%)

Query: 211 PSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLR 270
           P +  N  L +     ++ LT E+P        +      + +  + +    N     + 
Sbjct: 5   PRNVSNTFLQE-PLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 271 WLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP 330
             +L                     L LNN  LS  +P    +L  L+      N L   
Sbjct: 62  VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-E 105

Query: 331 IPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLV 390
           +P     L SL + + +   +S   P                                L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------------------------------LE 134

Query: 391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
            L +S N L   +P+ +   S L  + + NN+L+ ++P        L+ +   NN L  L
Sbjct: 135 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLEEL 188

Query: 451 --IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQG 508
             +      T ++   N                         +++  +            
Sbjct: 189 PELQNLPFLTAIYADNN------------------------SLKKLPDL----------- 213

Query: 509 KVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
                L  +    N L     P++ NL  + T+   +N L  L P    +L+   +L++ 
Sbjct: 214 --PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTL-PDLPPSLE---ALNVR 265

Query: 569 YNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
            N L   +P     L  L V    ++ LS   P 
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (297), Expect = 3e-29
 Identities = 75/370 (20%), Positives = 116/370 (31%), Gaps = 90/370 (24%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEG 276
           L+++  S+  L  ++P+ L     +   L L NN    +K   F    NL NL  L L  
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILIN 85

Query: 277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFC 336
           N      P + +    LE LYL+ N L              +   MPK            
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLK------------ELPEKMPKT----------- 122

Query: 337 HLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLH-GQLKGGTFFNCSSLVTLDL 394
               LQ L + +N I+    S F+ L  +  V L  N L    ++ G F     L  + +
Sbjct: 123 ----LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 395 SYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPC 454
           +   +  +IP        L+ L L  N +       L GLN L  L LS N++  +    
Sbjct: 179 ADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 455 FDN----TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKV 510
             N     +LH + N                                             
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLA----------------------------------D 261

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-------GNLTRIQTLNLSHNNL--TGLIPSTFSNLKQ 561
              +  + L  N  I  I                   ++L  N +    + PSTF  +  
Sbjct: 262 HKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 562 IESLDLSYNK 571
             ++ L   K
Sbjct: 321 RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  117 bits (296), Expect = 4e-29
 Identities = 62/297 (20%), Positives = 108/297 (36%), Gaps = 29/297 (9%)

Query: 170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ 229
           HLR++  S+   +  +P    D+ P     ++  N +       F N+  L  L L NN+
Sbjct: 32  HLRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 230 LTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQS 286
           ++ +I        V LE L LS N LK     M         L+ L++  N         
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSV 140

Query: 287 LSKCSSLEGLYLNNNSLSGKI--PRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQIL 344
            +  + +  + L  N L            +  L +I +   ++   IP       SL  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197

Query: 345 DISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSI 403
            +  N I+    +    L ++ ++ LS N +   +  G+  N   L  L L+ N L   +
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 404 PDWIDGLSQLSHLILGNNNLEG------EVPVQLCGLNQLQLLDLSNNNL-HGLIPP 453
           P  +     +  + L NNN+          P           + L +N + +  I P
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 29/266 (10%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
            L+++  SD  +   +P    P     + L  N +  ++K G F N  +L TL L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-- 457
           +   P     L +L  L L  N L+ E+P ++     LQ L +  N +  +    F+   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 458 --TKLHESYNNSSS---PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS 512
               +    N   S    +  F+ +  +             +      NI  I QG +  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKL------------SYIRIADTNITTIPQG-LPP 192

Query: 513 LLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
            L+ L L  NK I  +       L  +  L LS N+++ +   + +N   +  L L+ NK
Sbjct: 193 SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 572 LNGKIPHQLVELKELAVFSVAYNNLS 597
           L  K+P  L + K + V  +  NN+S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 17/238 (7%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNN 228
             L  L +S N  +  +P     +   L    +  N +     S F  +N + +++L  N
Sbjct: 100 VKLERLYLSKNQLK-ELP---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 229 QLT-GEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSL 287
            L    I      G   L ++ +++ ++   +        +L  L L+GN        SL
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASL 212

Query: 288 SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS 347
              ++L  L L+ NS+S      L N   L  + +  N L   +P        +Q++ + 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271

Query: 348 DNNISGSLPSCFHPL-------SITQVHLSKNML-HGQLKGGTFFNCSSLVTLDLSYN 397
           +NNIS    + F P        S + V L  N + + +++  TF        + L   
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 60/345 (17%), Positives = 115/345 (33%), Gaps = 80/345 (23%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
               +LD+ +N++T  I       L ++  L L NN     IS        +L+  Y   
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSK 109

Query: 78  NPINAKITKSHTLTTPKFQ-LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEF 136
           N +         L     + L  L +  +                      ++++ +   
Sbjct: 110 NQL-------KELPEKMPKTLQELRVHEN--------------------EITKVRKS--- 139

Query: 137 PNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRL 196
              +     ++  + L                  L+   + N  FQG         + +L
Sbjct: 140 ---VFNGLNQMIVVEL--------------GTNPLKSSGIENGAFQG---------MKKL 173

Query: 197 ISFNISMNALDGSIPSS-FGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255
               I+   +  +IP     +   L  L L  N++T ++      G  NL  L LS NS+
Sbjct: 174 SYIRIADTNIT-TIPQGLPPS---LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI 228

Query: 256 KG---HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG------K 306
                   +   N  +LR L L  N  V ++P  L+    ++ +YL+NN++S        
Sbjct: 229 SAVDNGSLA---NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 307 IPRWLGNLTWLIHIIMPKNHLE-GPIPVE-FCHLYSLQILDISDN 349
            P +         + +  N ++   I    F  +Y    + + + 
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 56/297 (18%), Positives = 102/297 (34%), Gaps = 48/297 (16%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISLEPLFNHSRLKI 72
             N+ +L  L + +N+++  IS      L  +E L LS N    +P   E +     L+ 
Sbjct: 72  FKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELP---EKMP--KTLQE 125

Query: 73  FYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQM 132
                N I  K+ KS  +     Q+  + L +                       + ++ 
Sbjct: 126 LRVHENEIT-KVRKS--VFNGLNQMIVVELGT-----------------------NPLK- 158

Query: 133 NGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
           +    N   +   KL  + + + ++     +P      L  L +  N     +       
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKIT-KVDAASLKG 214

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
           L  L    +S N++      S  N   L+ L L+NN+L  ++P  LA     ++ + L N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHN 272

Query: 253 NSLKG------HMFSRNFNLINLRWLQLEGNHF-VGEIPQSLSKC-SSLEGLYLNNN 301
           N++             N    +   + L  N     EI  S  +C      + L N 
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 42/217 (19%), Positives = 69/217 (31%), Gaps = 62/217 (28%)

Query: 384 FNCS-SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442
           F C   L  +  S   L   +P  +      + L L NN +          L  L  L L
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 443 SNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI 502
            NN +  + P  F                                               
Sbjct: 84  INNKISKISPGAFAP--------------------------------------------- 98

Query: 503 AYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562
                   L  L  L LS N+L   +P ++     +Q L +  N +T +  S F+ L Q+
Sbjct: 99  --------LVKLERLYLSKNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 563 ESLDLSYNKL-NGKIPHQ-LVELKELAVFSVAYNNLS 597
             ++L  N L +  I +     +K+L+   +A  N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 45/258 (17%), Positives = 82/258 (31%), Gaps = 63/258 (24%)

Query: 2   ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFY-LTSIEELSLSNNHF-HIPI 59
            +NE+          +  + ++++ +N L  S   +  F  +  +  + +++ +   IP 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 60  SLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKF-QLASLSLSSSYGDGVTFPKFLYY 118
               L     L   + D N    KITK    +      LA L LS               
Sbjct: 189 G---LP--PSLTELHLDGN----KITKVDAASLKGLNNLAKLGLSF-------------- 225

Query: 119 QHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLP--IHSHRHLRLLDV 176
                    + I       N  L N   LR+L L N+ L    ++P  +  H++++++ +
Sbjct: 226 ---------NSISA---VDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYL 270

Query: 177 SNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT-GEIP 235
            NNN      +   D  P                P           + L +N +   EI 
Sbjct: 271 HNNNISA---IGSNDFCP----------------PGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 236 EHLAMGCVNLEFLALSNN 253
                       + L N 
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
           L  +  S   L   +P  +        L+L +N +T +    F NLK + +L L  NK++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 574 GKIPHQLVELKELAVFSVAYNNLSGEIPE 602
              P     L +L    ++ N L  E+PE
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (299), Expect = 3e-28
 Identities = 81/414 (19%), Positives = 127/414 (30%), Gaps = 130/414 (31%)

Query: 162 RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQ 221
           ++    +    +L+V  +     +P  +   +  L    I  N L  S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTL---VIPDNNLT-SLPALPPE---LR 84

Query: 222 ILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVG 281
            L++S NQLT  +P     G + L   +     L                          
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLP------------------------- 117

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
            +P  L K      L++  N L+  +P     L  L    +  N L   +P     L   
Sbjct: 118 ALPSGLCK------LWIFGNQLT-SLPVLPPGLQELS---VSDNQLAS-LPALPSEL--- 163

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
             L   +N ++ SLP                              S L  L +S N L  
Sbjct: 164 CKLWAYNNQLT-SLPMLP---------------------------SGLQELSVSDNQLA- 194

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-TKL 460
           S+P      S+L  L   NN L   +P        L+ L +S N L  L P       +L
Sbjct: 195 SLPT---LPSELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLTSL-PVLPSELKEL 246

Query: 461 HESYNN-SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDL 519
             S N  +S P                                         S L  L +
Sbjct: 247 MVSGNRLTSLPML--------------------------------------PSGLLSLSV 268

Query: 520 SCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
             N+L   +P  + +L+   T+NL  N L+     T   L++I S       + 
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSER---TLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (284), Expect = 2e-26
 Identities = 72/376 (19%), Positives = 121/376 (32%), Gaps = 59/376 (15%)

Query: 144 NTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISM 203
           N     L++    L     LP     H+  L + +NN    +P         L +  +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 204 NALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRN 263
           N L  S+P     +  L I       L              L  L +  N L     S  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT----SLP 137

Query: 264 FNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMP 323
                L+ L +  N     +P   S    L  L+  NN L+  +P     L  L    + 
Sbjct: 138 VLPPGLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQELS---VS 189

Query: 324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLH------GQ 377
            N L   +P        L  L   +N ++ SLP+   P  + ++ +S N L        +
Sbjct: 190 DNQLAS-LPTLPS---ELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNRLTSLPVLPSE 242

Query: 378 LKGGTFFNC---------SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP 428
           LK                S L++L +  N L   +P+ +  LS  + + L  N L  E  
Sbjct: 243 LKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERT 300

Query: 429 VQLCGLNQLQLLDLSNNNL----HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQ 484
           +Q     ++      +  +            +   LH +  +   P  + +   + + H 
Sbjct: 301 LQAL--REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

Query: 485 GHVEKKIQEFFEFTTK 500
              E     F  F  +
Sbjct: 359 FGQEDNADAFSLFLDR 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 9e-26
 Identities = 76/375 (20%), Positives = 117/375 (31%), Gaps = 80/375 (21%)

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
               L +  +     +P  L   + +  L + +N+L+  +P     L  L    +  N L
Sbjct: 41  GNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLE---VSGNQL 93

Query: 328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFF--N 385
              +PV    L  L I      ++            + ++ +  N L       T     
Sbjct: 94  TS-LPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQL-------TSLPVL 139

Query: 386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445
              L  L +S N L  S+P      S+L  L   NN L   +P+     + LQ L +S+N
Sbjct: 140 PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 446 NLHGLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
            L  L P       KL    N  +S                                   
Sbjct: 192 QLASL-PTLPSELYKLWAYNNRLTSLPAL------------------------------- 219

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
                  S L  L +S N+L   +P     L     L +S N LT L P   S L    S
Sbjct: 220 ------PSGLKELIVSGNRL-TSLPVLPSELK---ELMVSGNRLTSL-PMLPSGL---LS 265

Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGL 624
           L +  N+L  ++P  L+ L      ++  N LS E      +  T               
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMA 323

Query: 625 PLPICRSPTTMSEAS 639
                R    +  A+
Sbjct: 324 GASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (256), Expect = 7e-23
 Identities = 75/419 (17%), Positives = 123/419 (29%), Gaps = 83/419 (19%)

Query: 5   ELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISLEP 63
            +   +  CL N     +L+V  + LT    + P      I  L + +N+   +P     
Sbjct: 29  AVVQKMRACLNN--GNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNLTSLPALP-- 80

Query: 64  LFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLE 123
                 L+      N +        +L      L  LS+                     
Sbjct: 81  ----PELRTLEVSGNQL-------TSLPVLPPGLLELSIF-----------------SNP 112

Query: 124 DVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQG 183
                           L    + L +L +  + L     LP      L+ L VS+N    
Sbjct: 113 L-------------THLPALPSGLCKLWIFGNQLT---SLP-VLPPGLQELSVSDNQLA- 154

Query: 184 HIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCV 243
            +P         L       N L  S+P        LQ L +S+NQL   +P   +    
Sbjct: 155 SLPALPS----ELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPS---- 201

Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
            L  L   NN L     S       L+ L + GN     +P      S L+ L ++ N L
Sbjct: 202 ELYKLWAYNNRLT----SLPALPSGLKELIVSGNRL-TSLPVLP---SELKELMVSGNRL 253

Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
           +  +P     L  L    + +N L   +P    HL S   +++  N +S           
Sbjct: 254 T-SLPMLPSGLLSL---SVYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ERTLQALR-E 306

Query: 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNN 422
           IT        +      G      +      + + L  +         +       +N 
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.0 bits (231), Expect = 7e-20
 Identities = 73/343 (21%), Positives = 121/343 (35%), Gaps = 55/343 (16%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH-IPISL 61
           ++ L  +LP CL     +  L +  N LT S+ +        +  L +S N    +P+  
Sbjct: 49  ESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSLPVLP 100

Query: 62  EPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD 121
             L     L IF      + A  +    L     QL SL +                   
Sbjct: 101 PGL---LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP---------------G 142

Query: 122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNF 181
           L+++  S  Q+    P       ++L +L   N+ L     LP      L+ L VS+N  
Sbjct: 143 LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPSGLQELSVSDNQL 193

Query: 182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
              +P    + L +L ++N  + +L             L+ L +S N+LT  +P   +  
Sbjct: 194 A-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLT-SLPVLPS-- 241

Query: 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
              L+ L +S N L     S       L  L +  N     +P+SL   SS   + L  N
Sbjct: 242 --ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 302 SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQIL 344
            LS +  + L  +T       P    +           +L + 
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 66/271 (24%), Positives = 102/271 (37%), Gaps = 51/271 (18%)

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFF--NCSSLVTLD 393
           C      +L++ ++ ++ +LP C  P  IT + +  N L       T        L TL+
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNL-------TSLPALPPELRTLE 87

Query: 394 LSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPP 453
           +S N L  S+P    GL +LS       +L           + L  L +  N L  L P 
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSL-PV 138

Query: 454 CFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS 512
                 +L  S N  +S       L  +  +      ++                  + S
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELCKLWAY----NNQLTSLPM-------------LPS 181

Query: 513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
            L  L +S N+L   +P     L +   L   +N LT L P+  S LK    L +S N+L
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLTSL-PALPSGLK---ELIVSGNRL 233

Query: 573 NGKIPHQLVELKELAVFSVAYNNLSGEIPEW 603
              +P    ELKEL    V+ N L+  +P  
Sbjct: 234 TS-LPVLPSELKEL---MVSGNRLT-SLPML 259

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
            +  + L++  + L   +P  +     I TL +  NNLT L P+    L+   +L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLTSL-PALPPELR---TLEVSGN 91

Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWK 604
           +L   +P     L EL++FS    +L        
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 34/191 (17%), Positives = 58/191 (30%), Gaps = 55/191 (28%)

Query: 419 GNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN--TKLHESYNNSSS-PDEQFK 475
                     ++ C  N   +L++  + L  L P C     T L    NN +S P     
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLTTL-PDCLPAHITTLVIPDNNLTSLPAL--- 79

Query: 476 ILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNL 535
                                                 L  L++S N+L   +P     L
Sbjct: 80  -----------------------------------PPELRTLEVSGNQLT-SLPVLPPGL 103

Query: 536 TRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
             +   +    +L  L          +  L +  N+L   +P     L+EL   SV+ N 
Sbjct: 104 LELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQ 152

Query: 596 LSGEIPEWKAQ 606
           L+  +P   ++
Sbjct: 153 LA-SLPALPSE 162

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 2e-27
 Identities = 77/458 (16%), Positives = 146/458 (31%), Gaps = 64/458 (13%)

Query: 137 PNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRL 196
              + + N +L  L L ++ L     +  H   +L+ LD+S N F      +    + +L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCV--NLEFLALSNNS 254
               +S   L+ S      ++N+ ++L +       +            +L  +  +N  
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEG------LYLNNNSLSGKIP 308
               +      + NL    ++      +    LS  + L+       L LNN   +    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 309 RWLGNLTWLIHII--------MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH 360
             +  L W   +         +               L +L I  +  +         + 
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 361 PLSITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG 419
             S   + + + +     +        S  + LD S NLL  ++ +    L++L  LIL 
Sbjct: 298 IFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 420 NNNLE--GEVPVQLCGLNQLQLLDLSNNNLHGLIPPC-FDN----TKLHESYNNSSSPDE 472
            N L+   ++      +  LQ LD+S N++                 L+ S N       
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI------ 410

Query: 473 QFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV 532
                                        +       +   +  LDL  NK+   IP QV
Sbjct: 411 -----------------------------LTDTIFRCLPPRIKVLDLHSNKI-KSIPKQV 440

Query: 533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
             L  +Q LN++ N L  +    F  L  ++ + L  N
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (270), Expect = 7e-25
 Identities = 91/463 (19%), Positives = 153/463 (33%), Gaps = 30/463 (6%)

Query: 4   NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP 63
           N +       + +++ LRIL +S N++   +  S   +   +E L LS+N     IS  P
Sbjct: 31  NYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-ISCHP 88

Query: 64  LFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLE 123
             N   LK      N  +A +           QL  L LS+++ +  +     +      
Sbjct: 89  TVN---LKHLDLSFNAFDA-LPICKEFGNMS-QLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 124 DVHFSRIQMNGEFPNWLLE-NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQ 182
            +         E P  L + N   L  +   N        + + +  +L L ++      
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 183 GHIP--------VEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEI 234
                       ++    L  L   NI                  +    +SN +L G++
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 235 PEHLAMGCVN----LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKC 290
                         L    + ++              N+       +          SK 
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE--GPIPVEFCHLYSLQILDISD 348
           S    L  +NN L+  +    G+LT L  +I+  N L+    I      + SLQ LDIS 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 349 NNISGSLP--SCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT-LDLSYNLLNGSIPD 405
           N++S       C    S+  +++S N     L    F      +  LDL  N +  SIP 
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDLHSNKIK-SIPK 438

Query: 406 WIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
            +  L  L  L + +N L+         L  LQ + L  N   
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (250), Expect = 2e-22
 Identities = 72/461 (15%), Positives = 137/461 (29%), Gaps = 79/461 (17%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNN 228
           +   +L++S N     +       L +L    IS N +     S F     L+ LDLS+N
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 229 QLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSL 287
           +L            VNL+ L LS N+       + F N+  L++L L   H        +
Sbjct: 80  KLVKISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 288 SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS 347
           +  +  + L +   +   K       L       +               +    + ++ 
Sbjct: 136 AHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 348 DNNISGSLPSCFHP-----------------LSITQVHLSKNMLHGQLKGGTFFNCSSLV 390
            +NI   L                       L++  +  + N     L+       +++ 
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTVW 250

Query: 391 TLDLSYNLLNG----SIPDWID-GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445
              +S   L G       D+    L  LS   + ++             + + + + + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 446 NLHGLIPPCFDN----TKLHESYNN-SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK 500
               +   C         L  S N  + +  E    L                       
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE--------------------- 349

Query: 501 NIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG---NLTRIQTLNLSHNNLT-GLIPSTF 556
                        L  L L  N+L   +         +  +Q L++S N+++        
Sbjct: 350 -------------LETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 557 SNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
           S  K + SL++S N L   I   L     + V  +  N + 
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (281), Expect = 5e-27
 Identities = 56/298 (18%), Positives = 102/298 (34%), Gaps = 36/298 (12%)

Query: 283 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSL 341
           IP  L+   +++ L L+NN ++      L     L  +++  N +   I  + F  L SL
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 342 QILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
           + LD+S N +S    S F PL S+T ++L  N      +   F + + L  L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 401 GSIPD-WIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-- 457
             I      GL+ L  L +  ++L+   P  L  +  +  L L       L+    D   
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 458 --TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS 515
               L     +  +    F  L +             E                      
Sbjct: 223 SVECLELRDTDLDTF--HFSELSTG------------ETNSLIK-----------KFTFR 257

Query: 516 GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
            + ++   L   +   +  ++ +  L  S N L  +    F  L  ++ + L  N  +
Sbjct: 258 NVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (259), Expect = 3e-24
 Identities = 57/271 (21%), Positives = 95/271 (35%), Gaps = 18/271 (6%)

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
            +   + S ++S N +     S       LQ L L++N +   I E       +LE L L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 251 SNN---SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSL-SKCSSLEGLYLNNNSLSGK 306
           S N   +L    F     L +L +L L GN +      SL S  + L+ L + N     K
Sbjct: 108 SYNYLSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 307 IP-RWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SI 364
           I  +    LT+L  + +  + L+   P     + ++  L +        L        S+
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 365 TQVHLSKNMLHG----QLKGGTFFNCSSLVTL---DLSYNLLNGSIPDWIDGLSQLSHLI 417
             + L    L      +L  G   +     T     ++   L   +   ++ +S L  L 
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 418 LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
              N L+         L  LQ + L  N   
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 44/249 (17%), Positives = 75/249 (30%), Gaps = 32/249 (12%)

Query: 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC 386
            E              I   S  +++ S+PS     ++  + LS N +   +       C
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRC 75

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
            +L  L L+ N +N    D    L  L HL L  N L          L+ L  L+L  N 
Sbjct: 76  VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
              L                       F  L  ++  +        +            F
Sbjct: 136 YKTL------------------GETSLFSHLTKLQILRVGNMDTFTKIQRKD-------F 170

Query: 507 QGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESL 565
            G  L+ L  L++  +  +    P+   ++  +  L L       L+         +E L
Sbjct: 171 AG--LTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 566 DLSYNKLNG 574
           +L    L+ 
Sbjct: 228 ELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 55/348 (15%), Positives = 107/348 (30%), Gaps = 102/348 (29%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP-LFNH-SRLKIFYA 75
            +++ LD+S+N++T  IS+S L    +++ L L++N  +   ++E   F+    L+    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
             N                  L++L                                   
Sbjct: 108 SYN-----------------YLSNL----------------------------------- 115

Query: 136 FPNWLLENNTKLRQLSLVNDSL-----AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIG 190
             +   +  + L  L+L+ +          F         L++L V N +    I  +  
Sbjct: 116 -SSSWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDF 170

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
             L  L    I  + L    P S  ++  +  L L   Q    + E       ++E L L
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 251 SNNSLKGH--------MFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS 302
            +  L             +        R +++       ++ + L++ S L  L  + N 
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNN 350
           L   +P  +                       F  L SLQ + +  N 
Sbjct: 289 LKS-VPDGI-----------------------FDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 42/248 (16%), Positives = 78/248 (31%), Gaps = 36/248 (14%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
            +++ SL  LD+S N L+ ++SSS    L+S+  L+L  N +    +L      S L   
Sbjct: 96  FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLTKL 151

Query: 74  YADNNPINAKITK--SHTLTTPKFQLASLSLS----SSYGDGVTFPKFLYYQHDLEDVHF 127
                      TK            L  L +      SY         L    ++  +  
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKS-----LKSIQNVSHLIL 205

Query: 128 SRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPV 187
              Q         ++  + +  L L            + +     L     N+       
Sbjct: 206 HMKQHI-LLLEIFVDVTSSVECLEL--------RDTDLDTFHFSELSTGETNSLIK---- 252

Query: 188 EIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247
                     +  I+  +L   +      ++ L  L+ S NQL   +P+ +     +L+ 
Sbjct: 253 -----KFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK 305

Query: 248 LALSNNSL 255
           + L  N  
Sbjct: 306 IWLHTNPW 313

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (276), Expect = 1e-26
 Identities = 61/298 (20%), Positives = 98/298 (32%), Gaps = 63/298 (21%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE--GPIPVEFCHLY 339
            +P  +   SS   L L +N L          LT L  + +  N L   G          
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 340 SLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
           SL+ LD+S N +  ++ S F  L  +  +    + L    +   F +  +L+ LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 399 LNGSIPDWIDGLSQLSHLIL-GNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457
              +     +GLS L  L + GN+  E  +P     L  L  LDLS   L  L P  F++
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517
                                                                LS L  L
Sbjct: 198 -----------------------------------------------------LSSLQVL 204

Query: 518 DLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNL-KQIESLDLSYNKLN 573
           ++S N     +       L  +Q L+ S N++         +    +  L+L+ N   
Sbjct: 205 NMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (273), Expect = 2e-26
 Identities = 56/280 (20%), Positives = 94/280 (33%), Gaps = 35/280 (12%)

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT-G 232
           +  ++      +P     I        +  N L       F  +  L  L LS+N L+  
Sbjct: 12  IRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 233 EIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNHFVGEIPQSL-SKC 290
                   G  +L++L LS N +     S NF  L  L  L  + ++       S+    
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN-HLEGPIPVEFCHLYSLQILDISDN 349
            +L  L +++             L+ L  + M  N   E  +P  F  L +L  LD+S  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 350 NISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDG 409
            +                         QL    F + SSL  L++S+N            
Sbjct: 186 QLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 410 LSQLSHLILGNNNLEGEVPVQLCGL-NQLQLLDLSNNNLH 448
           L+ L  L    N++      +L    + L  L+L+ N+  
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 2e-24
 Identities = 54/262 (20%), Positives = 92/262 (35%), Gaps = 58/262 (22%)

Query: 340 SLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQ-LKGGTFFNCSSLVTLDLSYN 397
           S   L++  N +       F  L  +T++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 398 LLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL-CGLNQLQLLDLSNNNLHGLIPPCFD 456
            +  ++     GL QL HL   ++NL+      +   L  L  LD+S+ +        F+
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516
                                                                 LS L  
Sbjct: 148 G-----------------------------------------------------LSSLEV 154

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
           L ++ N    +  P +   L  +  L+LS   L  L P+ F++L  ++ L++S+N     
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 576 IPHQLVELKELAVFSVAYNNLS 597
                  L  L V   + N++ 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 54/271 (19%), Positives = 101/271 (37%), Gaps = 47/271 (17%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISLEPLFNHSRLKIFYAD 76
           +S   L++ SN+L  S+       LT + +LSLS+N         +  F  + LK     
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 77  NNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEF 136
            N +        T+++    L  L             + L    D +  +  ++     F
Sbjct: 87  FNGV-------ITMSSNFLGLEQL-------------EHL----DFQHSNLKQMSEFSVF 122

Query: 137 PNWLLENNTKLRQLSLVNDSL----AGPFR-LPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
                 +   L  L + +        G F  L       L +L ++ N+FQ +   +I  
Sbjct: 123 -----LSLRNLIYLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFT 172

Query: 192 ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS 251
            L  L   ++S   L+   P++F +++ LQ+L++S+N     +         +L+ L  S
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYS 231

Query: 252 NNSLK---GHMFSRNFNLINLRWLQLEGNHF 279
            N +            +  +L +L L  N F
Sbjct: 232 LNHIMTSKKQELQHFPS--SLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 40/222 (18%), Positives = 76/222 (34%), Gaps = 36/222 (16%)

Query: 137 PNWLLENNTKLRQLSLVN---DSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
            +      T L+ L L      +++  F         L  LD  ++N +      +   L
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 194 PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN 253
             LI  +IS      +    F  ++ L++L ++ N         +     NL FL LS  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 254 SLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 310
            L+      F+   +L +L+ L +  N+F           +SL+ L  + N +     + 
Sbjct: 186 QLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352
           L +                          SL  L+++ N+ +
Sbjct: 243 LQHF-----------------------PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 42/220 (19%), Positives = 64/220 (29%), Gaps = 59/220 (26%)

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLE--GEVPVQLCGLNQLQLLDLSN 444
           SS   L+L  N L        D L+QL+ L L +N L   G       G   L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 445 NNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           N +  +    F                                                 
Sbjct: 88  NGVITM-SSNFLG----------------------------------------------- 99

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563
                 L  L  LD   + L       V  +L  +  L++SH +        F+ L  +E
Sbjct: 100 ------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 564 SLDLSYNKLNGKIPHQ-LVELKELAVFSVAYNNLSGEIPE 602
            L ++ N            EL+ L    ++   L  ++  
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 515 SGLDLSCNKL-IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
           SG ++ CN   +  +P  +   +    L L  N L  L    F  L Q+  L LS N L+
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 574 GK--IPHQLVELKELAVFSVAYNNLS 597
            K            L    +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 28/183 (15%), Positives = 59/183 (32%), Gaps = 7/183 (3%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           ++ N +  ++      +  L  LD   + L      S    L ++  L +S+ H  +   
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AF 142

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
                  S L++     N            T  +  L  L LS    + ++ P       
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELR-NLTFLDLSQCQLEQLS-PTAFNSLS 199

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNN 179
            L+ ++ S          +  +    L+ L    + +     +   H    L  L+++ N
Sbjct: 200 SLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 180 NFQ 182
           +F 
Sbjct: 259 DFA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (275), Expect = 1e-25
 Identities = 59/284 (20%), Positives = 102/284 (35%), Gaps = 38/284 (13%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNN 228
                +  +       +P     I       N+  N +      +F +++ L++L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 229 QLTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGNHFVGEIPQ 285
            +  +I      G  +L  L L +N L       F     L  LR L L  N        
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSY 165

Query: 286 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQIL 344
           + ++  SL  L L                            LE  I    F  L++L+ L
Sbjct: 166 AFNRVPSLMRLDLGEL-----------------------KKLEY-ISEGAFEGLFNLKYL 201

Query: 345 DISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP 404
           ++   NI   +P+    + + ++ +S N    +++ G+F   SSL  L +  + ++    
Sbjct: 202 NLGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 405 DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
           +  DGL+ L  L L +NNL          L  L  L L +N  +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  106 bits (267), Expect = 1e-24
 Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 46/265 (17%)

Query: 340 SLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
           + + L++ +NNI       F  L  +  + L +N +  Q++ G F   +SL TL+L  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 399 LNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN-LHGLIPPCFDN 457
           L        + LS+L  L L NN +E         +  L  LDL     L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 458 ----TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSL 513
                 L+    N                                   I  +     L  
Sbjct: 195 LFNLKYLNLGMCN-----------------------------------IKDMPNLTPLVG 219

Query: 514 LSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
           L  L++S N     I P     L+ ++ L + ++ ++ +  + F  L  +  L+L++N L
Sbjct: 220 LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 573 NGKIPHQLVE-LKELAVFSVAYNNL 596
           +  +PH L   L+ L    + +N  
Sbjct: 279 S-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 52/294 (17%), Positives = 94/294 (31%), Gaps = 74/294 (25%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
           ++ R L++  N +   I +    +L  +E L L  N     I +      + L      +
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFD 132

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           N                  L  +                                    P
Sbjct: 133 N-----------------WLTVI------------------------------------P 139

Query: 138 NWLLENNTKLRQLSLVNDSL----AGPFR-LPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
           +   E  +KLR+L L N+ +    +  F  +P      L  LD+       +I     + 
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEG 194

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
           L  L   N+ M  +   +P +   +  L+ L++S N    EI      G  +L+ L + N
Sbjct: 195 LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251

Query: 253 NSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
           + +     + F     L +L  L L  N+         +    L  L+L++N  
Sbjct: 252 SQVSLIERNAFD---GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 6e-12
 Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 38/255 (14%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
           +N ++        ++  L +L +  N +   I       L S+  L L +N   + I   
Sbjct: 84  ENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTV-IPSG 141

Query: 63  PLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ-LASLSLSSSYGDGVTFPKFLYYQHD 121
                S+L+  +  NNPI        ++ +  F  + SL                     
Sbjct: 142 AFEYLSKLRELWLRNNPI-------ESIPSYAFNRVPSL-------------------MR 175

Query: 122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSH-RHLRLLDVSNNN 180
           L+     +++          E    L+ L+L   ++     +P  +    L  L++S N+
Sbjct: 176 LDLGELKKLE---YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNH 229

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM 240
           F   I       L  L    +  + +     ++F  +  L  L+L++N L+  +P  L  
Sbjct: 230 FP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFT 287

Query: 241 GCVNLEFLALSNNSL 255
               L  L L +N  
Sbjct: 288 PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
           L  L  L L  N  I  I       L  + TL L  N LT +    F  L ++  L L  
Sbjct: 98  LHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
           N +     +    +  L    +        I E
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (270), Expect = 4e-25
 Identities = 56/262 (21%), Positives = 94/262 (35%), Gaps = 34/262 (12%)

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
            I       N+  N +     +SF ++  L+IL LS N +   I      G  NL  L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 251 SNNSLKG---HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 307
            +N L       F     L  L+ L L  N        + ++  SL  L L         
Sbjct: 120 FDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL------ 170

Query: 308 PRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQILDISDNNISGSLPSCFHPLSITQ 366
                              L   I    F  L +L+ L+++  N+   +P+    + + +
Sbjct: 171 -----------------KRLSY-ISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDE 211

Query: 367 VHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE 426
           + LS N L   ++ G+F     L  L +  + +     +  D L  L  + L +NNL   
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 427 VPVQLCGLNQLQLLDLSNNNLH 448
                  L+ L+ + L +N  +
Sbjct: 271 PHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (264), Expect = 3e-24
 Identities = 51/240 (21%), Positives = 87/240 (36%), Gaps = 44/240 (18%)

Query: 340 SLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
           + ++L++ +N I     + F  L  +  + LS+N +   ++ G F   ++L TL+L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 399 LNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPP-CFDN 457
           L          LS+L  L L NN +E         +  L+ LDL        I    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 458 ----TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSL 513
                 L+ +  N                        I                   L  
Sbjct: 184 LSNLRYLNLAMCNLRE---------------------IPNL--------------TPLIK 208

Query: 514 LSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
           L  LDLS N  +  I P     L  +Q L +  + +  +  + F NL+ +  ++L++N L
Sbjct: 209 LDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 32/210 (15%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLS-N 227
            +L  L++ +N     IP      L +L    +  N ++     +F  +  L+ LDL   
Sbjct: 112 ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 228 NQLTGEIPEHLAMGCVNLEFLALSNNSLKG-HMFSRNFNLINLRWLQLEGNHFVGEIPQS 286
            +L+  I E    G  NL +L L+  +L+     +    LI L  L L GNH     P S
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGS 226

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
                 L+ L++  + +   I R                         F +L SL  +++
Sbjct: 227 FQGLMHLQKLWMIQSQIQ-VIERNA-----------------------FDNLQSLVEINL 262

Query: 347 SDNNISGSLPSCFHPL-SITQVHLSKNMLH 375
           + NN++      F PL  + ++HL  N  +
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.0 bits (182), Expect = 4e-14
 Identities = 59/294 (20%), Positives = 104/294 (35%), Gaps = 74/294 (25%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
           T+ R+L++  NQ+   I  +   +L  +E L LS NH    I +      + L      +
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFD 121

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           N                 +L ++                                    P
Sbjct: 122 N-----------------RLTTI------------------------------------P 128

Query: 138 NWLLENNTKLRQLSLVNDSL----AGPFR-LPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
           N      +KL++L L N+ +    +  F  +P      LR LD+       +I     + 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-----SLRRLDLGELKRLSYISEGAFEG 183

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
           L  L   N++M  L   IP +   +  L  LDLS N L+  I      G ++L+ L +  
Sbjct: 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240

Query: 253 NSLK---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
           + ++    + F    NL +L  + L  N+         +    LE ++L++N  
Sbjct: 241 SQIQVIERNAFD---NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 52/254 (20%), Positives = 91/254 (35%), Gaps = 36/254 (14%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
           +N+++        ++  L IL +S N +  +I       L ++  L L +N     I   
Sbjct: 73  ENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTT-IPNG 130

Query: 63  PLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDL 122
                S+LK  +  NNPI                    S+ S       F   +     L
Sbjct: 131 AFVYLSKLKELWLRNNPIE-------------------SIPSY-----AF-NRIPSLRRL 165

Query: 123 EDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSH-RHLRLLDVSNNNF 181
           +     R+           E  + LR L+L   +L     +P  +    L  LD+S N+ 
Sbjct: 166 DLGELKRLS---YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL 219

Query: 182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
              I       L  L    +  + +     ++F N+  L  ++L++N LT  +P  L   
Sbjct: 220 S-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTP 277

Query: 242 CVNLEFLALSNNSL 255
             +LE + L +N  
Sbjct: 278 LHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
           L  L  L LS N  I  I       L  + TL L  N LT +    F  L +++ L L  
Sbjct: 87  LRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 570 NKLN---GKIPHQLVELKEL 586
           N +        +++  L+ L
Sbjct: 146 NPIESIPSYAFNRIPSLRRL 165

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
           ++ N L    P     +  L+ L +  +Q+   I  +    L S+ E++L++N+  + + 
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL-LP 271

Query: 61  LEPLFNHSRLKIFYADNNPIN 81
            +       L+  +  +NP N
Sbjct: 272 HDLFTPLHHLERIHLHHNPWN 292

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 3e-24
 Identities = 66/369 (17%), Positives = 111/369 (30%), Gaps = 89/369 (24%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEG 276
           L+++  S+  L   +P+ ++    +   L L NN    L+   F     L +L  L L  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFK---GLQHLYALVLVN 87

Query: 277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFC 336
           N       ++ S    L+ LY++ N L              I   +P +           
Sbjct: 88  NKISKIHEKAFSPLRKLQKLYISKNHLV------------EIPPNLPSS----------- 124

Query: 337 HLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
               L  L I DN I       F  L ++  + +  N L         F+   L  L +S
Sbjct: 125 ----LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 396 YNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCF 455
              L   IP   D    L+ L L +N ++      L   ++L  L L +N +  +     
Sbjct: 181 EAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 456 DN----TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVL 511
                  +LH   N  S                                          L
Sbjct: 238 SFLPTLRELHLDNNKLSRVPAGLPD----------------------------------L 263

Query: 512 SLLSGLDLSCNKLIGHIPPQV-------GNLTRIQTLNLSHNNLT--GLIPSTFSNLKQI 562
            LL  + L  N  I  +                   ++L +N +    + P+TF  +   
Sbjct: 264 KLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 563 ESLDLSYNK 571
            ++     K
Sbjct: 323 LAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 62/291 (21%), Positives = 105/291 (36%), Gaps = 49/291 (16%)

Query: 288 SKCS-SLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
             C   L  +  ++  L   +P+ +        + +  N +      +F  L  L  L +
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 347 SDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPD 405
            +N IS      F PL  + ++++SKN L  ++        SSLV L +  N +      
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKG 141

Query: 406 WIDGLSQLSHLILGNNNLEGEV--PVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-TKLHE 462
              GL  ++ + +G N LE     P    GL  L  L +S   L G+     +   +LH 
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHL 200

Query: 463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCN 522
            +N                        KIQ                   S L  L L  N
Sbjct: 201 DHN------------------------KIQAIELED-------LLR--YSKLYRLGLGHN 227

Query: 523 KLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
           + I  I       L  ++ L+L +N L+  +P+   +LK ++ + L  N +
Sbjct: 228 Q-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 58/270 (21%), Positives = 97/270 (35%), Gaps = 50/270 (18%)

Query: 340 SLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
              +LD+ +N+IS      F  L  +  + L  N +  ++    F     L  L +S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 399 LNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH--GLIPPCFD 456
           L   IP   +  S L  L + +N +         GL  +  +++  N L   G  P  FD
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 457 NTKLHE---SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSL 513
             KL+    S    +                                         +   
Sbjct: 171 GLKLNYLRISEAKLTG------------------------------------IPKDLPET 194

Query: 514 LSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
           L+ L L  NK I  I  +     +++  L L HN +  +   + S L  +  L L  NKL
Sbjct: 195 LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 573 NGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
           + ++P  L +LK L V  +  NN++ ++  
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 51/259 (19%), Positives = 86/259 (33%), Gaps = 36/259 (13%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNN 228
           R L+ L +S N+    IP    ++   L+   I  N +       F  +  +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 229 QLTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGNHFVGEIPQ 285
            L     E  A   + L +L +S   L G    +         L  L L+ N     I  
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE------TLNELHLDHNKIQ-AIEL 210

Query: 286 -SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQIL 344
             L + S L  L L +N +       L  L  L  + +  N L   +P     L  LQ++
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVV 269

Query: 345 DISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSI- 403
            +  NNI+    + F P+                  G     +    + L  N +     
Sbjct: 270 YLHTNNITKVGVNDFCPV------------------GFGVKRAYYNGISLFNNPVPYWEV 311

Query: 404 -PDWIDGLSQLSHLILGNN 421
            P     ++    +  GN 
Sbjct: 312 QPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.1 bits (185), Expect = 9e-15
 Identities = 49/345 (14%), Positives = 93/345 (26%), Gaps = 81/345 (23%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
               +LD+ +N ++  +       L  +  L L NN     I  +      +L+  Y   
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISK 111

Query: 78  NPINAKITKSHTLTTPKFQ-LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEF 136
           N +         +       L  L +  +                       ++      
Sbjct: 112 NHL-------VEIPPNLPSSLVELRIHDN--------------------RIRKVPKG--- 141

Query: 137 PNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRL 196
              +      +  + +                  L         F G           +L
Sbjct: 142 ---VFSGLRNMNCIEM--------------GGNPLENSGFEPGAFDG----------LKL 174

Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK 256
               IS   L G           L  L L +N++   I     +    L  L L +N ++
Sbjct: 175 NYLRISEAKLTGIPKDLPET---LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR 230

Query: 257 ---GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP----- 308
                  S    L  LR L L+ N     +P  L     L+ +YL+ N+++ K+      
Sbjct: 231 MIENGSLS---FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285

Query: 309 --RWLGNLTWLIHIIMPKNHLEGPI--PVEFCHLYSLQILDISDN 349
              +     +   I +  N +      P  F  +     +   + 
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 51/297 (17%), Positives = 93/297 (31%), Gaps = 49/297 (16%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH-IPISLEPLFNHSRLKI 72
              +  L  L + +N+++  I       L  +++L +S NH   IP     L   S L  
Sbjct: 74  FKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIP---PNLP--SSLVE 127

Query: 73  FYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQM 132
               +N I  K+ K   + +    +  + +  +                 E   F     
Sbjct: 128 LRIHDNRIR-KVPKG--VFSGLRNMNCIEMGGN----------PLENSGFEPGAFD---- 170

Query: 133 NGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
                        KL  L +    L     +P      L  L + +N  Q  I +E    
Sbjct: 171 -----------GLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQ-AIELEDLLR 215

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
             +L    +  N +      S   +  L+ L L NN+L+  +P  L      L+ + L  
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHT 273

Query: 253 NSLK---GHMFS---RNFNLINLRWLQLEGNHF-VGEIPQSLSKC-SSLEGLYLNNN 301
           N++     + F              + L  N     E+  +  +C +    +   N 
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 43/260 (16%), Positives = 82/260 (31%), Gaps = 65/260 (25%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
            L+++  SD  +  ++P        T + L  N +  +L+   F     L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
           +         L +L  L +  N+L  E+P  L   + L  L + +N +  +    F    
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSG-- 145

Query: 460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDL 519
                                                              L  ++ +++
Sbjct: 146 ---------------------------------------------------LRNMNCIEM 154

Query: 520 SCNKL-IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPH 578
             N L      P   +  ++  L +S   LTG+       L     L L +NK+   I  
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL---NELHLDHNKIQ-AIEL 210

Query: 579 Q-LVELKELAVFSVAYNNLS 597
           + L+   +L    + +N + 
Sbjct: 211 EDLLRYSKLYRLGLGHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 38/216 (17%), Positives = 64/216 (29%), Gaps = 61/216 (28%)

Query: 384 FNCS-SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442
           F C   L  +  S   L  ++P  I      + L L NN++         GL  L  L L
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 443 SNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI 502
            NN +  +    F                                               
Sbjct: 86  VNNKISKIHEKAFSP--------------------------------------------- 100

Query: 503 AYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562
                   L  L  L +S N L+  IPP +   + +  L +  N +  +    FS L+ +
Sbjct: 101 --------LRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 563 ESLDLSYNKL-NGKIPHQLVELKELAVFSVAYNNLS 597
             +++  N L N        +  +L    ++   L+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 49/238 (20%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISL 61
           DN +R       + + ++  +++  N L  S      F    +  L +S      IP  L
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL 191

Query: 62  EPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD 121
                   L   + D+N I   I     L   K  L  L L  +                
Sbjct: 192 -----PETLNELHLDHNKIQ-AIELEDLLRYSK--LYRLGLGHN---------------Q 228

Query: 122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLP--IHSHRHLRLLDVSNN 179
           +  +       NG            LR+L L N+ L+   R+P  +   + L+++ +  N
Sbjct: 229 IRMIE------NGSLSFL-----PTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTN 274

Query: 180 NFQGHIP------VEIGDILPRLISFNISMNALDGSI--PSSFGNMNLLQILDLSNNQ 229
           N    +       V  G         ++  N +      P++F  +     +   N +
Sbjct: 275 NIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
           L  +  S   L   +P ++        L+L +N+++ L    F  L+ + +L L  NK++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 574 GKIPHQLVELKELAVFSVAYNNLSGEIPE 602
                    L++L    ++ N+L  EIP 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPP 119

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (263), Expect = 6e-24
 Identities = 70/442 (15%), Positives = 144/442 (32%), Gaps = 42/442 (9%)

Query: 165 IHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILD 224
           I     LR+L +S+N  +  +   +      L   ++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 225 LSNNQLTGEIPEHLAMGC-VNLEFLALSNNSLKGHMFSRNFNL-INLRWLQLEGNHFVGE 282
           LS N     +P     G    L FL LS    +        +L ++   L L   H  G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 283 IPQSLS--KCSSLEGLYLNNNSLSGKIPRWLGNLTWL--IHIIMPKNHLEGPIPVEFCHL 338
             +SL     + L  ++  N+  S ++   +  L  L   +I +   + +  +       
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 339 YSLQILDISDNNISGSLPSCFHPLS------ITQVHLSKNMLHGQLKGGTFFNCS----S 388
               +L+++  +I  +               +  +++    +  ++    F        S
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 389 LVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
           L+   +   +   S        ++++  +L  ++      V     +    L+ + N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 449 GLIPPCFDN----TKLHESYNNSSSPDEQFKIL----------FSIKGHQGHVEKKIQEF 494
             +            L    N   +  +   +            S+     H   +   +
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 495 FEFTTK------NIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNL 548
            E           +       +   +  LDL  N++   IP  V +L  +Q LN++ N L
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL 485

Query: 549 TGLIPSTFSNLKQIESLDLSYN 570
             +    F  L  ++ + L  N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (254), Expect = 1e-22
 Identities = 80/450 (17%), Positives = 154/450 (34%), Gaps = 34/450 (7%)

Query: 16  NMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYA 75
            ++ LR+L +S N++  S+      +   +E L +S+N     IS  P+ +   L+    
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISCCPMAS---LRHLDL 128

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
             N     +           +L  L LS++    +      +       +      + G 
Sbjct: 129 SFNDF--DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 136 FPNWLLENNTKLRQLSLV-NDSLAGPFRLPIHSHRHLRLLDVS-NNNFQGHIPVEIGDIL 193
               L   NT +  L    N   +    + +++  HL+L ++  N+     +   + ++ 
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 194 PRLISFNISMNALDGSIPSSFGNMNLLQI-----LDLSNNQLTGEIPEHLAMGC----VN 244
                 N+++  ++ +   S              L++ N  +T  I             +
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304
           L    + N        +       +    L  +             SS   L    N  +
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 305 GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS------C 358
             + +    L  L  +I+ +N L+           ++  L+  D +++ SL S      C
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTC 424

Query: 359 FHPLSITQVHLSKNMLHGQLKGGTFFNC--SSLVTLDLSYNLLNGSIPDWIDGLSQLSHL 416
               SI  ++LS NML      G+ F C    +  LDL  N +  SIP  +  L  L  L
Sbjct: 425 AWAESILVLNLSSNMLT-----GSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478

Query: 417 ILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
            + +N L+         L  LQ + L +N 
Sbjct: 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 86/458 (18%), Positives = 161/458 (35%), Gaps = 73/458 (15%)

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
           D+ PR  + ++S N++          ++ L++L LS+N++   +  H+ +   +LE+L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQS--LSKCSSLEGLYLNNNSL----- 303
           S+N L+         + +LR L L  N F   +P        + L  L L+         
Sbjct: 108 SHNRLQNISCC---PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 304 ---------------------SGKIPRWLGNLTWLIHIIMPKN-HLEGPIPVEFCHLYSL 341
                                 G+        T ++H++   N      + +    L  L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQ-------LKGGTFFNCSSLVTLDL 394
           Q+ +I  N+ +      F         L    L          +K   FF    +  L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 395 SYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV-----PVQLCGLNQLQLLDLSNNNLHG 449
               +   I       S+ +   L   +++ +V             ++ +  LS ++   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 450 LIPPCFDN----TKLHESYNN-SSSPDEQFKILFSIKGHQGHVEKKIQE----FFEFTTK 500
           +   C  +    T L+ + N  + S  +    L  ++         ++            
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ-RNGLKNFFKVALMTKN- 401

Query: 501 NIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQ-VGNLTRIQTLNLSHNNLTGLIPSTFSNL 559
                     +S L  LD+S N L  H   +       I  LNLS N LTG +   F  L
Sbjct: 402 ----------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCL 448

Query: 560 -KQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL 596
             +++ LDL  N++   IP  +  L+ L   +VA N L
Sbjct: 449 PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 7e-17
 Identities = 56/380 (14%), Positives = 103/380 (27%), Gaps = 45/380 (11%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF 279
            + L LS N ++ E+          L  L LS+N ++                       
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR----------------------- 89

Query: 280 VGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG-PIPVEFCH 337
              +   +      LE L +++N L   I      +  L H+ +  N  +  P+  EF +
Sbjct: 90  --SLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 338 LYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN 397
           L  L  L +S              L ++ + L     H +          +   L L ++
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 398 LLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN 457
             +         ++ L HL L N  L  E   +L           +  N+          
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517
             +         P E   I              I E  +       + +    L  L   
Sbjct: 265 CSVKLFQFFWPRPVEYLNIY----------NLTITERIDREE----FTYSETALKSLMIE 310

Query: 518 DLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP 577
            +     +            +    LS ++   +      +      L+ + N     + 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 578 HQLVELKELAVFSVAYNNLS 597
                LK L    +  N L 
Sbjct: 371 QGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 7e-16
 Identities = 80/441 (18%), Positives = 147/441 (33%), Gaps = 54/441 (12%)

Query: 137 PNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRL 196
              +   N  L  L + ++ L     +       LR LD+S N+F      +    L +L
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148

Query: 197 ISFNISMNALDGSIPSSFGNMNLLQI-LDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255
               +S             +++L  I LDL +  + G   E L +    +  L    NSL
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 256 KGHMFSRNFN---LINLRWLQLEGNHFVG--EIPQSLSKCSSLEGLYLNNNSLSGKIPRW 310
                + + N    + L  ++L   +          L++  +L  + L +   + K    
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 311 LGNLTW---LIHIIMPKNHLEGPIPVEF-----CHLYSLQILDISDNNISGSLPSCFHPL 362
           L    W   + ++ +    +   I  E        L SL I  + +     S  + +   
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 363 SITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN 421
           +   +  LS +     +      + SS   L+ + N+   S+      L +L  LIL  N
Sbjct: 329 AEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 422 NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN--------TKLHESYNNSSSPDEQ 473
            L+            +  L+  + +L+ L    +D           L+ S N        
Sbjct: 388 GLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML--TGSV 444

Query: 474 FKILFSIKGHQGHVEK------KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH 527
           F+ L         V+       +I    +  T           L  L  L+++ N+L   
Sbjct: 445 FRCLPP------KVKVLDLHNNRIMSIPKDVTH----------LQALQELNVASNQL-KS 487

Query: 528 IPPQV-GNLTRIQTLNLSHNN 547
           +P  V   LT +Q + L  N 
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 20/286 (6%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
                L            +L+ ++ +             F+   +E L++ N      I 
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVEYLNIYNLTITERID 293

Query: 61  LEPL-FNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQ 119
            E   ++ + LK    ++      +     L +   ++    LS S    +         
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS-P 352

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVN---DSLAGPFRLPIHSHRHLRLLDV 176
                ++F++     +          +L+ L L      +      +   +   L  LDV
Sbjct: 353 SSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDV 410

Query: 177 SNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
           S N+   H           ++  N+S N L GS+         +++LDL NN++   IP+
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPK 467

Query: 237 HLAMGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEGNHF 279
            +      L+ L +++N LK     +F     L +L+++ L  N +
Sbjct: 468 DV-THLQALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPW 509

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (260), Expect = 1e-23
 Identities = 67/408 (16%), Positives = 128/408 (31%), Gaps = 74/408 (18%)

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
           D     ++    M A D     S   +  L  LD  N+ +T ++          L  L  
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLIC 71

Query: 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 310
           ++N++     S      NL +L  + N     +   ++  + L  L  + N L+ K+   
Sbjct: 72  TSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD-- 122

Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLS 370
           +     L ++   +N L     ++  H   L  LD   N     L        +T +  S
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCS 178

Query: 371 KNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ 430
            N    ++          L  L+   N +   +   ++   QL+ L   +N L     + 
Sbjct: 179 FN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---ID 228

Query: 431 LCGLNQLQLLDLSNNNLHGLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHVEK 489
           +  L QL   D S N L  L        T LH    +                       
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD----------------------- 265

Query: 490 KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLT 549
                      ++ +       + L        + I  +   V + T++  L+     +T
Sbjct: 266 -------LLEIDLTH------NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

Query: 550 GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
            L     S   ++  L L+  +L  ++   +    +L   S    ++ 
Sbjct: 311 EL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (252), Expect = 1e-22
 Identities = 65/466 (13%), Positives = 136/466 (29%), Gaps = 98/466 (21%)

Query: 2   ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISL 61
           A  E++ +       + +L  LD  ++ +T     + +  LT + +L  ++N+    I+ 
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN----ITT 78

Query: 62  EPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHD 121
             L  ++ L     D+N                 +L +L ++                  
Sbjct: 79  LDLSQNTNLTYLACDSN-----------------KLTNLDVTP----------------- 104

Query: 122 LEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNF 181
                                  TKL  L+   + L     L +  +  L  L+ + N  
Sbjct: 105 ----------------------LTKLTYLNCDTNKLTK---LDVSQNPLLTYLNCARNTL 139

Query: 182 QGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
              I V       +L   +  +N     +         L  LD S N++T          
Sbjct: 140 T-EIDVS---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQN--- 190

Query: 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
              L  L    N++     +     I L +L    N    EI   ++  + L     + N
Sbjct: 191 -KLLNRLNCDTNNITKLDLN---QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVN 243

Query: 302 SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHP 361
            L+ ++   +  L+ L  +   +  L     ++  H   L             L    + 
Sbjct: 244 PLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDVTHNT 297

Query: 362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN 421
             +  +          +          LV L L+   L   +   +   ++L  L   N 
Sbjct: 298 -QLYLLDCQAA----GITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNA 349

Query: 422 NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNS 467
           +++ +    +  +  L     +      +      N  L  + +  
Sbjct: 350 HIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 2e-22
 Identities = 78/529 (14%), Positives = 141/529 (26%), Gaps = 99/529 (18%)

Query: 147 LRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNAL 206
                     +     +       L  LD  N++      +E    L  L     + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTSNNI 76

Query: 207 DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNL 266
             ++         L  L   +N+LT  +          L +L    N L     S     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLTKLDVS---QN 126

Query: 267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH 326
             L +L    N    EI   +S  + L  L  + N    K+   +   T L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC 386
           +     ++      L  L+   NNI+  L                               
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLD--------------------------LNQN 211

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
             L  LD S N L   I   +  L+QL++     N L     + +  L++L  L     +
Sbjct: 212 IQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD 265

Query: 447 LHGL-IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYI 505
           L  + +                    +                                 
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTH------------------------------ 295

Query: 506 FQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESL 565
                 + L  LD     +   +   +    ++  L L++  LT L     S+  +++SL
Sbjct: 296 -----NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSL 344

Query: 566 DLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP 625
                 +       + ++  L     A       +P+      +             G P
Sbjct: 345 SCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNP 401

Query: 626 LPICRSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLY 674
           + I      + + +      +NL   +       TS    I G VT  +
Sbjct: 402 MNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPF 450

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 74/481 (15%), Positives = 141/481 (29%), Gaps = 67/481 (13%)

Query: 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQL 230
                 +    Q    +     L  L S +   +++  +  +    +  L  L  ++N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQ-LATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNI 76

Query: 231 TGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKC 290
           T  +         NL +LA  +N L     +    L  L +L  + N         +S+ 
Sbjct: 77  T-TLDLS---QNTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNKL---TKLDVSQN 126

Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNN 350
             L  L    N+L+ +I   + + T L  +    N     +         L  LD S N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 351 ISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGL 410
           I+  L    +   + +++   N     +          L  LD S N L   I   +  L
Sbjct: 182 IT-ELDVSQNK-LLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 411 SQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL-IPPCFDNTKLHESYNNSSS 469
           +QL++     N L     + +  L++L  L     +L  + +                  
Sbjct: 233 TQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKL----I 525
             +       +               +     I  +   +    L  L L+  +L    +
Sbjct: 290 ELD-VTHNTQL------------YLLDCQAAGITELDLSQ-NPKLVYLYLNNTELTELDV 335

Query: 526 GHIP---------------PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
            H                   VG +  +     +      +   T +N     ++     
Sbjct: 336 SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395

Query: 571 KLNG---KIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP 627
              G    I      + + A  ++ + NLS + P     F + N       T     P P
Sbjct: 396 DQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQP 455

Query: 628 I 628
           I
Sbjct: 456 I 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 50/347 (14%), Positives = 94/347 (27%), Gaps = 85/347 (24%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           +   T L  LD S N++T       +     +  L+   N+    I+   L  + +L   
Sbjct: 166 VTPQTQLTTLDCSFNKIT----ELDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFL 217

Query: 74  YADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
              +N                 +L  + ++                              
Sbjct: 218 DCSSN-----------------KLTEIDVT------------------------------ 230

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
                      T+L       + L     L + +   L  L     +    I +      
Sbjct: 231 ---------PLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLT---HN 274

Query: 194 PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN 253
            +LI F          +     +   L +LD     +T E+          L +L L+N 
Sbjct: 275 TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYLYLNNT 328

Query: 254 SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 313
            L     S   +   L+ L     H   +   S+ K  +L   +             L N
Sbjct: 329 ELTELDVS---HNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTN 383

Query: 314 LTWLIHI---IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
            +  I +   ++ +      I      +Y      I+  N+S   P+
Sbjct: 384 NSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (250), Expect = 1e-23
 Identities = 57/293 (19%), Positives = 94/293 (32%), Gaps = 86/293 (29%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
            +P  +   ++ + ++L+ N +S  +P                          F    +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRIS-HVP-----------------------AASFRACRNL 58

Query: 342 QILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
            IL +  N ++    + F  L  + Q+ LS N     +   TF     L TL L    L 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 401 GSIP-DWIDGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGLIPPCFDNT 458
             +      GL+ L +L L +N L+  +P      L  L  L L  N +  +    F   
Sbjct: 119 -ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG- 175

Query: 459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLD 518
                                                               L  L  L 
Sbjct: 176 ----------------------------------------------------LHSLDRLL 183

Query: 519 LSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           L  N+ + H+ P    +L R+ TL L  NNL+ L     + L+ ++ L L+ N
Sbjct: 184 LHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.8 bits (239), Expect = 4e-22
 Identities = 59/264 (22%), Positives = 90/264 (34%), Gaps = 42/264 (15%)

Query: 167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLS 226
            +             Q  +P     I        +  N +     +SF     L IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 227 NNQLTGEIPEHLAMGCVNLEFLALSNN----SLKGHMFSRNFNLINLRWLQLEGNHFVGE 282
           +N L   I      G   LE L LS+N    S+    F     L  L  L L+      E
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-E 119

Query: 283 IPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           +        ++L+ LYL +N+L   +P                          F  L +L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDT-----------------------FRDLGNL 155

Query: 342 QILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
             L +  N IS      F  L S+ ++ L +N +   +    F +   L+TL L  N L+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

Query: 401 GSIPDWI-DGLSQLSHLILGNNNL 423
            ++P      L  L +L L +N  
Sbjct: 215 -ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 9e-22
 Identities = 51/242 (21%), Positives = 77/242 (31%), Gaps = 56/242 (23%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEG 276
            Q + L  N+++  +P      C NL  L L +N    +    F+    L  L  L L  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---GLALLEQLDLSD 89

Query: 277 NHFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF 335
           N  +  +  +       L  L+L+   L  ++                        P  F
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG-----------------------PGLF 125

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
             L +LQ L + DN +  +LP                         TF +  +L  L L 
Sbjct: 126 RGLAALQYLYLQDNALQ-ALPD-----------------------DTFRDLGNLTHLFLH 161

Query: 396 YNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCF 455
            N ++        GL  L  L+L  N +    P     L +L  L L  NNL  L     
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 456 DN 457
             
Sbjct: 222 AP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 10/210 (4%)

Query: 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQL 230
            + + +  N    H+P         L    +  N L     ++F  + LL+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 231 TGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEGNHFVGEIP-QS 286
              +      G   L  L L       L   +F     L  L++L L+ N     +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDT 148

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
                +L  L+L+ N +S    R    L  L  +++ +N +    P  F  L  L  L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 347 SDNNISGSLPSCFHPL-SITQVHLSKNMLH 375
             NN+S        PL ++  + L+ N   
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 51/264 (19%), Positives = 80/264 (30%), Gaps = 59/264 (22%)

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
           C+             +  ++P    P +  ++ L  N +   +   +F  C +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 396 YNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGLIPPC 454
            N+L         GL+ L  L L +N     V      GL +L  L L    L  L P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 455 FDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLL 514
           F                                                       L+ L
Sbjct: 125 FRG-----------------------------------------------------LAAL 131

Query: 515 SGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
             L L  N  +  +P     +L  +  L L  N ++ +    F  L  ++ L L  N++ 
Sbjct: 132 QYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 574 GKIPHQLVELKELAVFSVAYNNLS 597
              PH   +L  L    +  NNLS
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 41/267 (15%), Positives = 77/267 (28%), Gaps = 70/267 (26%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
            + + + +  N+++  + ++      ++  L L +N     I        + L+     +
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           N                 QL S+                                     
Sbjct: 90  NA----------------QLRSV------------------------------------D 97

Query: 138 NWLLENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
                   +L  L L    L     G FR        L+ L + +N  Q  +P +    L
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFR----GLAALQYLYLQDNALQ-ALPDDTFRDL 152

Query: 194 PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN 253
             L    +  N +      +F  ++ L  L L  N++   +  H       L  L L  N
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFAN 211

Query: 254 SLK---GHMFSRNFNLINLRWLQLEGN 277
           +L        +    L  L++L+L  N
Sbjct: 212 NLSALPTEALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 43/217 (19%), Positives = 62/217 (28%), Gaps = 66/217 (30%)

Query: 391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
           T       L  ++P  I   +    + L  N +             L +L L +N L  +
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 451 IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKV 510
               F                                                       
Sbjct: 72  DAAAFTG----------------------------------------------------- 78

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
           L+LL  LDLS N  +  + P     L R+ TL+L    L  L P  F  L  ++ L L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 570 NKLNGKIPHQ----LVELKELAVFSVAYNNLSGEIPE 602
           N L   +P      L  L  L    +  N +S  +PE
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHL---FLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 52/256 (20%), Positives = 87/256 (33%), Gaps = 62/256 (24%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
            N +            +L IL + SN L   I ++    L  +E+L LS+N   +  S++
Sbjct: 41  GNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA-QLR-SVD 97

Query: 63  P-LFNH-SRLKIFYADNNPINAKITKSHTLTTPKFQ-LASLSLSSSYGDGVTFPKFLYYQ 119
           P  F+   RL   + D   +         L    F+ LA+L             ++LY  
Sbjct: 98  PATFHGLGRLHTLHLDRCGL-------QELGPGLFRGLAAL-------------QYLY-- 135

Query: 120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN 179
             L+D     +      P+    +   L  L L                   R+  V   
Sbjct: 136 --LQDNALQAL------PDDTFRDLGNLTHLFL----------------HGNRISSVPER 171

Query: 180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
            F+G         L  L    +  N +    P +F ++  L  L L  N L+  +P    
Sbjct: 172 AFRG---------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEAL 221

Query: 240 MGCVNLEFLALSNNSL 255
                L++L L++N  
Sbjct: 222 APLRALQYLRLNDNPW 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (259), Expect = 2e-23
 Identities = 59/334 (17%), Positives = 105/334 (31%), Gaps = 73/334 (21%)

Query: 140 LLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISF 199
             +   K        +       L          L ++  N    +P  +    P++   
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 200 NISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHM 259
            I+ NAL  S+P    +   L+ LD  +N+L+  +PE  A    +L+ L + NN L    
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--- 133

Query: 260 FSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIH 319
                                  +P+  +    LE +  +NN L+  +P    +L  L  
Sbjct: 134 ----------------------MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLS- 166

Query: 320 IIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLK 379
             +  N L   +P       SL+ LD+S N +  SLP+        + H S+        
Sbjct: 167 --VRNNQLTF-LPEL---PESLEALDVSTNLLE-SLPA-----VPVRNHHSE-------- 206

Query: 380 GGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQL 439
                   + +      N +   IP+ I  L     +IL +N L   +   L        
Sbjct: 207 -------ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 440 LDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQ 473
                              +       +  P+ +
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.7 bits (235), Expect = 2e-20
 Identities = 59/392 (15%), Positives = 100/392 (25%), Gaps = 102/392 (26%)

Query: 216 NMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL-KGHMFSRNFNLINLRWLQL 274
           N N     +   N ++              E  AL   +  +     +   +     LQL
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE 334
              +    +P +L     +  L +  N+L   +P    +L +L       N L   +P  
Sbjct: 67  NRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPEL 118

Query: 335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDL 394
                SL+ LD+ +N ++  LP                              + L  ++ 
Sbjct: 119 PA---SLKHLDVDNNQLT-MLPELP---------------------------ALLEYINA 147

Query: 395 SYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPC 454
             N L   +P+     + L  L + NN L   +P        L+ LD+S N L  L    
Sbjct: 148 DNNQLT-MLPELP---TSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLLESLPAVP 199

Query: 455 FDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLL 514
             N                                                         
Sbjct: 200 VRNHHS--------------------------------------------------EETE 209

Query: 515 SGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574
                  N+ I HIP  + +L    T+ L  N L+  I  + S               + 
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 575 KIPHQLVELKELAVFSVAYNNLSGEIPEWKAQ 606
               Q        +                +Q
Sbjct: 269 SDGQQ--NTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 6e-13
 Identities = 66/451 (14%), Positives = 127/451 (28%), Gaps = 101/451 (22%)

Query: 4   NELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISLE 62
           +                 +   + N+    +       +    EL L+  +   +P +L 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLL---KECLINQFSELQLNRLNLSSLPDNLP 79

Query: 63  PLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDL 122
           P     ++ +     N                  L SL            P+       L
Sbjct: 80  P-----QITVLEITQN-----------------ALISL------------PELP---ASL 102

Query: 123 EDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQ 182
           E +     +++   P         L+ L + N+ L     LP      L  ++  NN   
Sbjct: 103 EYLDACDNRLS-TLPELP----ASLKHLDVDNNQLT---MLP-ELPALLEYINADNNQLT 153

Query: 183 GHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGC 242
                                      +P    +   L++L + NNQLT  +PE      
Sbjct: 154 --------------------------MLPELPTS---LEVLSVRNNQLT-FLPELPE--- 180

Query: 243 VNLEFLALSNNSLKG--HMFSRNFNLINLR-WLQLEGNHFVGEIPQSLSKCSSLEGLYLN 299
            +LE L +S N L+    +  RN +      + +   N     IP+++        + L 
Sbjct: 181 -SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 300 NNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCF 359
           +N LS +I   L   T       P+ +    +     +     + D        +  S  
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQS-- 294

Query: 360 HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN---LLNGSIPDWIDGLSQLSHL 416
                  V    +    +    TF      ++  +S          +  W++ LS  + L
Sbjct: 295 ------DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

Query: 417 ILGNNNLEGEVPVQLCGLNQLQLLDLSNNNL 447
              +  +  +          L   +L    L
Sbjct: 349 RQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 50/314 (15%), Positives = 87/314 (27%), Gaps = 84/314 (26%)

Query: 343 ILDISDNNISGSLPSCFHPLS----ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
             +   N ISG+    F              ++N     LK       +    L L+   
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI---NQFSELQLNRLN 70

Query: 399 LNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN- 457
           L+ S+PD +    Q++ L +  N L   +P        L+ LD  +N L  L P    + 
Sbjct: 71  LS-SLPDNL--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLSTL-PELPASL 122

Query: 458 TKLHESYNN-SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516
             L    N  +  P+                                        +LL  
Sbjct: 123 KHLDVDNNQLTMLPEL--------------------------------------PALLEY 144

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL-------------------IPSTFS 557
           ++   N+L   +P    +L     L++ +N LT L                   +P+   
Sbjct: 145 INADNNQL-TMLPELPTSLEV---LSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPV 200

Query: 558 NLKQIES----LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNEN 613
                E          N++   IP  ++ L       +  N LS           T   +
Sbjct: 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPD 258

Query: 614 SYEGNTFLCGLPLP 627
            +    +       
Sbjct: 259 YHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 55/201 (27%)

Query: 407 IDGLSQLSHLILGNN--NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN--TKLHE 462
           I+    LS     N       +         +  L   + N    L+  C  N  ++L  
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 463 SYNNSSS-PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC 521
           +  N SS PD                                      +   ++ L+++ 
Sbjct: 67  NRLNLSSLPDN-------------------------------------LPPQITVLEITQ 89

Query: 522 NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV 581
           N LI  +P    +L   + L+   N L+ L P   ++LK    LD+  N+L   +P    
Sbjct: 90  NALI-SLPELPASL---EYLDACDNRLSTL-PELPASLKH---LDVDNNQLT-MLPELPA 140

Query: 582 ELKELAVFSVAYNNLSGEIPE 602
            L+ +   +   N L+  +PE
Sbjct: 141 LLEYI---NADNNQLT-MLPE 157

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 52/239 (21%), Positives = 84/239 (35%), Gaps = 41/239 (17%)

Query: 340 SLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
           S + LD+S N +       F     +  + LS+  +   ++ G + + S L TL L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 399 LNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPP-CFD 456
           +  S+      GLS L  L+    NL       +  L  L+ L++++N +     P  F 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 457 N----TKLHESYNN-SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVL 511
           N      L  S N   S      ++L  +                               
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMP------------------------------ 176

Query: 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
            L   LDLS N  +  I P      R++ L L  N L  +    F  L  ++ + L  N
Sbjct: 177 LLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 49/247 (19%)

Query: 210 IPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNL 266
           +P S       + LDLS N L   +  +       L+ L LS     +++   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 267 INLRWLQLEGNHFVGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN 325
            +L  L L GN  +  +     S  SSL+ L     +L+  +                  
Sbjct: 76  SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLE----------------- 116

Query: 326 HLEGPIPVEFCHLYSLQILDISDNNISGSLPS--CFHPL-SITQVHLSKNMLHGQLKGGT 382
                      HL +L+ L+++ N I  S      F  L ++  + LS N +   +    
Sbjct: 117 ------NFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

Query: 383 FFNCSSL----VTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQ 438
                 +    ++LDLS N +N  I        +L  L L  N L+         L  LQ
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227

Query: 439 LLDLSNN 445
            + L  N
Sbjct: 228 KIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYS 340
           +IP +L    S + L L+ N L         +   L  + + +  ++  I    +  L  
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 341 LQILDISDNNISGSLPS-CFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN- 397
           L  L ++ N I  SL    F  L S+ ++   +  L   L+     +  +L  L++++N 
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 398 LLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQL----LDLSNNNLHGLIPP 453
           + +  +P++   L+ L HL L +N ++      L  L+Q+ L    LDLS N ++ + P 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 454 CFDNTKLHE---SYNN-SSSPDEQFKILFSIK 481
            F   +L E     N   S PD  F  L S++
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 57/243 (23%), Positives = 82/243 (33%), Gaps = 62/243 (25%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILG 419
           P S   + LS N L   L   +FF+   L  LDLS   +  +I D     LS LS LIL 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFS 479
            N ++        GL+ LQ L     NL  L      +                      
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH---------------------- 122

Query: 480 IKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRI 538
                                          L  L  L+++ N +     P+   NLT +
Sbjct: 123 -------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 539 QTLNLSHNNLTGLIPSTFSNLKQIE----SLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594
           + L+LS N +  +  +    L Q+     SLDLS N +N  I     +   L   ++  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 595 NLS 597
            L 
Sbjct: 211 QLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 143 NNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLIS 198
           + + L  L L  + +     G F         L+ L     N    +       L  L  
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLA-SLENFPIGHLKTLKE 128

Query: 199 FNISMNALDGSIPSS--FGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF----LALSN 252
            N++ N +  S      F N+  L+ LDLS+N++   I          +      L LS 
Sbjct: 129 LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 253 NSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
           N +   +    F  I L+ L L+ N           + +SL+ ++L+ N
Sbjct: 187 NPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 51/249 (20%), Positives = 88/249 (35%), Gaps = 55/249 (22%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP-LFNH-SRLKIFYA 75
            S + LD+S N L   + S   F    ++ L LS        ++E   +   S L     
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL 83

Query: 76  DNNPINA-------KITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFS 128
             NPI +        ++    L   +  LA  SL +     +   K L     +      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELN----VAHNLIQ 137

Query: 129 RIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVE 188
             ++   F N             L N                L  LD+S+N  Q  I   
Sbjct: 138 SFKLPEYFSN-------------LTN----------------LEHLDLSSNKIQ-SIYCT 167

Query: 189 IGDILPRL----ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVN 244
              +L ++    +S ++S+N ++   P +F  +  L+ L L  NQL   +P+ +     +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTS 225

Query: 245 LEFLALSNN 253
           L+ + L  N
Sbjct: 226 LQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 3e-18
 Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 9/173 (5%)

Query: 291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNN 350
                L+L+ N L       L   T L  + + +  L   + V    L  L  LD+S N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQ 88

Query: 351 ISGSLPSCFHPLSITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-D 408
           +  SLP     L    V  +S N L   L  G       L  L L  N L  ++P  +  
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 409 GLSQLSHLILGNNNLEGEVPVQLC-GLNQLQLLDLSNNNLHGLIPPCFDNTKL 460
              +L  L L NNNL  E+P  L  GL  L  L L  N+L+ +    F +  L
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 54/248 (21%), Positives = 85/248 (34%), Gaps = 62/248 (25%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
           S   ++    N++ +LP    P   T +HLS+N+L       T    + L  L+L    L
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL 67

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
              +      L  L  L L +N L+  +P+    L  L +LD+S N L  L         
Sbjct: 68  T-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-- 122

Query: 460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDL 519
                                                              L  L  L L
Sbjct: 123 ---------------------------------------------------LGELQELYL 131

Query: 520 SCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPH 578
             N+L   +PP +     +++ L+L++NNLT L     + L+ +++L L  N L   IP 
Sbjct: 132 KGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189

Query: 579 QLVELKEL 586
                  L
Sbjct: 190 GFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 14/185 (7%)

Query: 145 TKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMN 204
                L L  + L       +  +  L  L++        + V     LP L + ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 205 ALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFS 261
            L  S+P     +  L +LD+S N+LT  +P     G   L+ L L  N LK     + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 262 RNFNLINLRWLQLEGNHFVGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
                  L  L L  N+   E+P  L +   +L+ L L  NSL   IP+       L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 321 IMPKN 325
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 46/233 (19%), Positives = 74/233 (31%), Gaps = 57/233 (24%)

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
           D+       ++S N L     ++      L  L+L   +LT ++     +    L  L L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL--PVLGTLDL 84

Query: 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 310
           S+N L+                          +P       +L  L ++ N L+  +P  
Sbjct: 85  SHNQLQ-------------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS-CFHPLS-ITQVH 368
                                      L  LQ L +  N +  +LP     P   + ++ 
Sbjct: 119 A-----------------------LRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLS 154

Query: 369 LSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN 421
           L+ N L  +L  G      +L TL L  N L  +IP    G   L    L  N
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 44/224 (19%), Positives = 71/224 (31%), Gaps = 69/224 (30%)

Query: 384 FNCS-SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442
            +   S + ++     L  ++P  +      + L L  N L       L    +L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 443 SNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI 502
               L  L                                                    
Sbjct: 63  DRAELTKL--QVDGT--------------------------------------------- 75

Query: 503 AYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562
                   L +L  LDLS N+L   +P     L  +  L++S N LT L       L ++
Sbjct: 76  --------LPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 563 ESLDLSYNKLNGKIPH----QLVELKELAVFSVAYNNLSGEIPE 602
           + L L  N+L   +P        +L++L   S+A NNL+ E+P 
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKL---SLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 44/243 (18%), Positives = 70/243 (28%), Gaps = 75/243 (30%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNH-SRLKIFYAD 76
               IL +S N L  + S + L   T + +L+L        ++   +      L      
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE----LTKLQVDGTLPVLGTLDLS 85

Query: 77  NNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEF 136
           +N                 QL SL L                                  
Sbjct: 86  HN-----------------QLQSLPL---------------------------------- 94

Query: 137 PNWLLENNTKLRQLSLVNDSL----AGPF-RLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
              L +    L  L +  + L     G    L       L+ L +  N  +  +P  +  
Sbjct: 95  ---LGQTLPALTVLDVSFNRLTSLPLGALRGLG-----ELQELYLKGNELK-TLPPGLLT 145

Query: 192 ILPRLISFNISMNALDGSIPSS-FGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
             P+L   +++ N L   +P+     +  L  L L  N L   IP+    G   L F  L
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG-FFGSHLLPFAFL 202

Query: 251 SNN 253
             N
Sbjct: 203 HGN 205

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 84.5 bits (209), Expect = 8e-18
 Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 17/234 (7%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN----SLKGHMFSRNFNLINLRWLQLE 275
              L     +L   I +    G  +LE + +S N     ++  +FS   NL  L  +++E
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS---NLPKLHEIRIE 87

Query: 276 GNHFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN-HLEGPIPV 333
             + +  I  ++     +L+ L ++N  +         +    + + +  N ++      
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 334 EFCHL-YSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTL 392
            F  L +   IL ++ N I     S F+   + +++LS N    +L    F   S  V L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 393 DLSYNLLNGSIPDWIDGLSQLSHL-ILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445
           D+S   ++ S+P +  GL  L  L      NL+ ++P  L  L  L    L+  
Sbjct: 208 DISRTRIH-SLPSY--GLENLKKLRARSTYNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 47/294 (15%)

Query: 284 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQI 343
              +  CS+        + ++ +IP  L      I +      L       F     L+ 
Sbjct: 3   HHRICHCSNRV-FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEK 58

Query: 344 LDISDNNISGSLPS-CFHPL-SITQVHLSK-NMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
           ++IS N++   + +  F  L  + ++ + K N L   +    F N  +L  L +S   + 
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK 117

Query: 401 GSIPDWI-DGLSQLSHLILGNNNLEGEVPVQ-LCGL-NQLQLLDLSNNNLHGLIPPCFDN 457
             +PD       Q   L + +N     +      GL  +  +L L+ N +  +    F+ 
Sbjct: 118 -HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176

Query: 458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL 517
           T+L E   + ++       L  +                        +F G   S    L
Sbjct: 177 TQLDELNLSDNNN------LEELP---------------------NDVFHG--ASGPVIL 207

Query: 518 DLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           D+S  + I  +P     NL +++  +    NL  L       L  +    L+Y 
Sbjct: 208 DISRTR-IHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 41/256 (16%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEGN 277
           ++     +++T EIP  L     N   L      L+      FS      +L  +++  N
Sbjct: 12  RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQN 64

Query: 278 HFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFC 336
             +  I     S    L  + +                          N+L    P  F 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKA-----------------------NNLLYINPEAFQ 101

Query: 337 HLYSLQILDISDNNISGSLP--SCFHPLSITQVHLSKNMLHGQLKGGTFFNCSS-LVTLD 393
           +L +LQ L IS+  I   LP     H L    + +  N+    ++  +F   S   V L 
Sbjct: 102 NLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 394 LSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP 452
           L+ N +   I +   +G       +  NNNLE        G +   +LD+S   +H L  
Sbjct: 161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 453 PCFDN-TKLHESYNNS 467
              +N  KL      +
Sbjct: 220 YGLENLKKLRARSTYN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 9e-15
 Identities = 49/268 (18%), Positives = 86/268 (32%), Gaps = 32/268 (11%)

Query: 332 PVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT 391
               CH  S ++    ++ ++  +PS   P +  ++      L   ++ G F     L  
Sbjct: 3   HHRICHC-SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEK 58

Query: 392 LDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLC-GLNQLQLLDLSNNNLHG 449
           +++S N +   I   +   L +L  + +   N    +  +    L  LQ L +SN  +  
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 450 LIPPCFDN----TKLHESYNN--SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIA 503
           L      +      L    N    +     F  L                        I 
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-----------SFESVILWLNKNGIQ 167

Query: 504 YI----FQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSN 558
            I    F G    L   L+LS N  +  +P  V    +    L++S   +  L      N
Sbjct: 168 EIHNSAFNG--TQLDE-LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 559 LKQIESLDLSYNKLNGKIPHQLVELKEL 586
           LK++ +      K       +LV L E 
Sbjct: 225 LKKLRARSTYNLKKLP-TLEKLVALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 63/288 (21%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
            +   L     +L   I          +E++ +S N     I  +   N  +L     + 
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
                              L  ++           P+      +L+ +  S   +    P
Sbjct: 89  AN----------------NLLYIN-----------PEAFQNLPNLQYLLISNTGIK-HLP 120

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI 197
           +    ++ +   L +                 ++ +  +  N+F G             +
Sbjct: 121 DVHKIHSLQKVLLDI---------------QDNINIHTIERNSFVGL--------SFESV 157

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---S 254
              ++ N +     S+F    L ++    NN L  E+P  +  G      L +S     S
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS 216

Query: 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS 302
           L  +      NL  LR           ++P +L K  +L    L   S
Sbjct: 217 LPSYGLE---NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 1e-17
 Identities = 59/411 (14%), Positives = 121/411 (29%), Gaps = 27/411 (6%)

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
               I  N+   ++  ++      +N +  +  +N+ +   + + +     N+  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 74

Query: 253 NSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 312
           N L         NL NL WL L+ N  + ++  SL     L+ L L +N +S  I   L 
Sbjct: 75  NKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 128

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN 372
           +L  L  + +  N +          L  L  L + DN IS  +        +  ++LSKN
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 185

Query: 373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432
            +   L+        +L  L+L          +    L   + +   + +L    P  + 
Sbjct: 186 HIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 240

Query: 433 GLNQLQLLDLSNNNLHGLIPPCF--------DNTKLHESYNNSSSPDEQFKILFSIKGHQ 484
                +  ++  +         F           K       +    E + + + + G  
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300

Query: 485 GHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS 544
              + +               +  K            N    ++      L  +     +
Sbjct: 301 IKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETT 360

Query: 545 HNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
              +       +             +    +        K L V   A N 
Sbjct: 361 EKTVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLASHRCKALTVDREARNG 411

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 6e-13
 Identities = 56/344 (16%), Positives = 106/344 (30%), Gaps = 56/344 (16%)

Query: 293 LEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352
           +      +  +    P         I   + K  +   +      L S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQ 412
            S+    +  ++T++ L+ N L   +K     N  +L  L L  N +   +   +  L +
Sbjct: 57  -SVQGIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKK 110

Query: 413 LSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---SYNNSSS 469
           L  L L +N +  ++   L  L QL+ L L NN +   I      TKL       N    
Sbjct: 111 LKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQ--- 164

Query: 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP 529
                                           I+ I     L+ L  L LS N  I  + 
Sbjct: 165 --------------------------------ISDIVPLAGLTKLQNLYLSKNH-ISDLR 191

Query: 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589
             +  L  +  L L          +  SNL    ++  +   L    P  + +  +    
Sbjct: 192 A-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKP 248

Query: 590 SVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPT 633
           +V ++            +        +   F   +  P+    T
Sbjct: 249 NVKWHLPEFTNEVSFIFYQPVTIGKAKA-RFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 51/337 (15%), Positives = 100/337 (29%), Gaps = 77/337 (22%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
                     ++    +T    +     L SI+++  +N+      S++ +     +   
Sbjct: 17  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 70

Query: 74  YADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
           + + N +   I     L      L  L L                ++ ++D+        
Sbjct: 71  FLNGNKLT-DIKPLTNLK----NLGWLFLD---------------ENKIKDLSS------ 104

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRL-PIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
                  L++  KL+ LSL ++ ++    +  +     L  L + NN         I DI
Sbjct: 105 -------LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNK--------ITDI 146

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
                              +    +  L  L L +NQ++ +I      G   L+ L LS 
Sbjct: 147 -------------------TVLSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSK 184

Query: 253 NSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 312
           N +          L NL  L+L     + +     S       +   + SL    P  + 
Sbjct: 185 NHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 240

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDN 349
           +        +  +  E    V F     + I      
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 31/233 (13%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI-----LPR 195
           ++    + +L L  + L      P+ + ++L  L +  N         I D+     L +
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENK--------IKDLSSLKDLKK 110

Query: 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255
           L S ++  N +  S  +   ++  L+ L L NN++T      L+     L+ L+L +N +
Sbjct: 111 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 165

Query: 256 KGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 315
                     L  L+ L L  NH + ++ ++L+   +L+ L L +     K      NL 
Sbjct: 166 SD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 316 WLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVH 368
               +      L  P  +     Y          N+   LP   + +S     
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDGDY-------EKPNVKWHLPEFTNEVSFIFYQ 267

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 48/297 (16%), Positives = 95/297 (31%), Gaps = 27/297 (9%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             +  +  +L    +  ++    + L+ +  +I  N++++    +Q   L  +  L L+ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 74

Query: 445 NNLHGLIPPCFDNTKLHESY--NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI 502
           N L   I P  +   L   +   N        K L  +            +        I
Sbjct: 75  NKLTD-IKPLTNLKNLGWLFLDENKIKDLSSLKDLKKL------------KSLSLEHNGI 121

Query: 503 AYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562
           + I     L  L  L L  NK I  I   +  LT++ TL+L  N ++ +     + L ++
Sbjct: 122 SDINGLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQISDI--VPLAGLTKL 177

Query: 563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLC 622
           ++L LS N +       L  LK L V  +       +    ++     N       + + 
Sbjct: 178 QNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 623 GLPLPICRSPTTMSEASIENERDDNLIDTDSFFITFTTSYVIVIFGIVTVLYVNSYW 679
             P  I             +  +     +  F+   T       F       +   +
Sbjct: 236 --PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 290

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 66/393 (16%), Positives = 105/393 (26%), Gaps = 108/393 (27%)

Query: 216 NMNLLQILDLSNNQLTGEIPEHLAMGCVNLE-FLALSNNSLKGHMFSRNFNLINLRWLQL 274
           N +  +    S     G     L  G  +LE  L   +       F+     ++L+ L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 275 EGNHFVGEIPQSLSK---CSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
                   I     +    S L+ L L N  ++G  P  L   T                
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP-------------- 121

Query: 332 PVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT 391
                    L IL++ + + +                         L     +    L  
Sbjct: 122 --------DLNILNLRNVSWATRDAW--------------------LAELQQWLKPGLKV 153

Query: 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPV----QLCGLNQLQLLDLSNNNL 447
           L ++         + +     LS L L +N   GE  +           LQ+L L N  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQ 507
                 C                                                     
Sbjct: 214 ETPSGVCSALAAA----------------------------------------------- 226

Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566
                 L GLDLS N L            +++ +LNLS   L  +     + L     LD
Sbjct: 227 ---RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLD 280

Query: 567 LSYNKLNGK-IPHQLVELKELAVFSVAYNNLSG 598
           LSYN+L+    P +L ++  L   S+  N    
Sbjct: 281 LSYNRLDRNPSPDELPQVGNL---SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 56/304 (18%), Positives = 82/304 (26%), Gaps = 17/304 (5%)

Query: 13  CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKI 72
           C  N +  +    S+    G+          S+E L    +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 73  FYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH-DLEDVHFSRIQ 131
                  I ++I            L  L+L +    G   P  L     DL  ++   + 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 132 MNGEFPNWLLE----NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPV 187
                  WL E        L+ LS+            +     L  LD+S+N   G   +
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 188 E---IGDILPRLISFNISMN---ALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG 241
                    P L    +         G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN 301
              L  L LS   LK  +         L  L L  N      P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGN 306

Query: 302 SLSG 305
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 46/263 (17%), Positives = 80/263 (30%), Gaps = 60/263 (22%)

Query: 1   MADNELRGSLPW-----CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF 55
           + + E+ G+ P         ++  L + +VS       ++    +    ++ LS++  H 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 56  HIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKF-QLASLSLSSSYGDGVTFPK 114
               S E +     L      +NP   +      L   KF  L  L+L            
Sbjct: 162 LN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR----------- 209

Query: 115 FLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLL 174
                                        N  +   S V  +L         +   L+ L
Sbjct: 210 -----------------------------NAGMETPSGVCSAL-------AAARVQLQGL 233

Query: 175 DVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEI 234
           D+S+N+ +        D   +L S N+S   L             L +LDLS N+L    
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD-RN 289

Query: 235 PEHLAMGCVNLEFLALSNNSLKG 257
           P    +    +  L+L  N    
Sbjct: 290 PSPDEL--PQVGNLSLKGNPFLD 310

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 40/248 (16%), Positives = 77/248 (31%), Gaps = 49/248 (19%)

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
           C  +  +   ++  +I   +PS   P S   + L +  L   +    F N  ++  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 396 YNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHGLIPP 453
            ++    +       LS+++H+ + N      +    L  L  L+ L + N  L      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 454 CFD-----NTKLHESYNN--SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
                      L  + N   +S P   F+ L                             
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGL----------------------------- 154

Query: 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNLKQ-IES 564
                +    L L  N     +     N T++  + L+ N  LT +    F  +      
Sbjct: 155 ----CNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 565 LDLSYNKL 572
           LD+S   +
Sbjct: 210 LDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 44/246 (17%), Positives = 76/246 (30%), Gaps = 59/246 (23%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN----SLKGHMFSRNFNLINLRWLQLE 275
            Q L L    L   IP H      N+  + +S +     L+ H F    NL  +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 276 GNHFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE 334
               +  I    L +   L+ L + N  L                          P   +
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-----------------------MFPDLTK 125

Query: 335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFN-CSSLVTLD 393
                   IL+I+DN    S+P                          F   C+  +TL 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPV-----------------------NAFQGLCNETLTLK 162

Query: 394 LSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ-LCGL-NQLQLLDLSNNNLHGLI 451
           L  N    S+  +    ++L  + L  N     +      G+ +   LLD+S  ++  L 
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221

Query: 452 PPCFDN 457
               ++
Sbjct: 222 SKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 10/202 (4%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPS-SFGNMNLLQILDLSN 227
              + L +   + +  IP      LP +    +S++     + S SF N++ +  +++ N
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 228 NQLTGEIPEHLAMGCVNLEFLALSNNSLKG-HMFSRNFNLINLRWLQLEGNHFVGEIPQS 286
            +    I          L+FL + N  LK     ++ ++      L++  N ++  IP +
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 287 L--SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYS-LQ 342
                C+    L L NN  +  +  +  N T L  + + KN     I  + F  +YS   
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 343 ILDISDNNISGSLPS-CFHPLS 363
           +LD+S  +++ +LPS     L 
Sbjct: 209 LLDVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNN-LTGLIPSTFSNLKQIESLDLS 568
           L  +S + +S +  +  +      NL+++  + + +   LT + P     L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 569 YNKLNGKIPHQ--LVELKELAVFSVAYNNLSGEIPE 602
              L    P    +       +  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
             ++C  +   IP         QTL L   +L  +    FSNL  I  + +S +    ++
Sbjct: 16  FRVTCKDI-QRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 577 P----HQLVELKEL 586
                + L ++  +
Sbjct: 72  ESHSFYNLSKVTHI 85

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 75/468 (16%), Positives = 130/468 (27%), Gaps = 124/468 (26%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALD----GSIPSSFGNMNLLQILD 224
             ++ LD+           E+  +L +     +    L       I S+      L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 225 LSNNQLTGE----IPEHLAMGCVNLEFLALSNNSLK-------GHMFSRNFNLINLRWLQ 273
           L +N+L       + + L      ++ L+L N  L                    L+ L 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELH 119

Query: 274 LEGNHFVGEIPQSLSK-----CSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE 328
           L  N       Q L +        LE L L   SLS      L ++              
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-------------- 165

Query: 329 GPIPVEFCHLYSLQILDISDNNISGS----LPSCF--HPLSITQVHLSKNMLHG---QLK 379
                        + L +S+N+I+ +    L       P  +  + L    +     +  
Sbjct: 166 ------LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 380 GGTFFNCSSLVTLDLSYNLLNGS-----IPDWIDGLSQLSHLILGNNNLEGEVPVQ---- 430
            G   + +SL  L L  N L         P  +   S+L  L +    +           
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCR 278

Query: 431 -LCGLNQLQLLDLSNNNLH---------GLIPPCFDNTKLHESYNNSSSPDEQFKILFSI 480
            L     L+ L L+ N L           L+ P      L     +              
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-------------- 324

Query: 481 KGHQGHVEKKIQEFFEFTTKNIAYIFQG-KVLSLLSGLDLSCNKL-----------IGHI 528
                           FT    ++          L  L +S N+L           +G  
Sbjct: 325 ----------------FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ- 367

Query: 529 PPQVGNLTRIQTLNLSHNNLT----GLIPSTFSNLKQIESLDLSYNKL 572
                  + ++ L L+  +++      + +T      +  LDLS N L
Sbjct: 368 -----PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 85/480 (17%), Positives = 153/480 (31%), Gaps = 93/480 (19%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLF----NHSRLKIF 73
             ++ LD+   +L+ +  +  L  L   + + L +         + +      +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 74  YADNNPINAKITK--SHTLTTPKFQLASLSLSSSY--GDGVT-FPKFLYYQHDLEDVHFS 128
              +N +           L TP  ++  LSL +    G G       L     L+++H S
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 129 RIQMNGE----FPNWLLENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRLLDVSNNN 180
              +           LL+   +L +L L   SL      P    + +    + L VSNN+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 181 FQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA- 239
                   I +   R++   +  +               L+ L L +  +T +    L  
Sbjct: 182 --------INEAGVRVLCQGLKDSPC------------QLEALKLESCGVTSDNCRDLCG 221

Query: 240 --MGCVNLEFLALSNNSLKG---HMFSRNFNLIN--LRWLQLEGNHF----VGEIPQSLS 288
                 +L  LAL +N L               +  LR L +          G++ + L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 289 KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD 348
              SL+ L L  N L  +  R L          + +                L+ L +  
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCET-------LLEPGC------------QLESLWVKS 322

Query: 349 NNISGSLPSCFHPLS--------ITQVHLSKNMLHG----QLKGGTFFNCSSLVTLDLSY 396
            + +    +C    S        + ++ +S N L      +L  G     S L  L L+ 
Sbjct: 323 CSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 397 NLLN----GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC-GLNQ----LQLLDLSNNNL 447
             ++     S+   +     L  L L NN L     +QL   + Q    L+ L L +   
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 67/412 (16%), Positives = 117/412 (28%), Gaps = 115/412 (27%)

Query: 217 MNL-LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK-------GHMFSRNFNLIN 268
           M+L +Q LD+   +L+      L       + + L +  L              N     
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN---PA 57

Query: 269 LRWLQLEGNHFVGEIPQSLSKC-----SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMP 323
           L  L L  N         + +        ++ L L N  L+G     L +          
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST--------- 108

Query: 324 KNHLEGPIPVEFCHLYSLQILDISDNNISGS----------LPSCFHPLSITQVHLSKNM 373
                         L +LQ L +SDN +  +           P C     + ++ L    
Sbjct: 109 -----------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC----RLEKLQLEYCS 153

Query: 374 LHGQLKGGTFF-----NCSSLVTLDLSYNLLNGSIPDWI-DGLS----QLSHLILGNNNL 423
           L                      L +S N +N +    +  GL     QL  L L +  +
Sbjct: 154 LSAA--SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

Query: 424 EGEVPVQLCGL----NQLQLLDLSNNNLH---------GLIPPCFDNTKLHESYNNSSSP 470
             +    LCG+      L+ L L +N L          GL+ P      L          
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG---- 267

Query: 471 DEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQG-KVLSLLSGLDLSCNKL----I 525
                                      T K    + +  +    L  L L+ N+L     
Sbjct: 268 --------------------------ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 526 GHIPPQVGN-LTRIQTLNLSHNNLTGL----IPSTFSNLKQIESLDLSYNKL 572
             +   +     ++++L +   + T        S  +  + +  L +S N+L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 69/377 (18%), Positives = 109/377 (28%), Gaps = 83/377 (22%)

Query: 14  LANMTSLRILDVSSNQLTGS----ISSSPLFYLTSIEELSLSNNHFHIPISLEPLF---- 65
           L  + +L+ L +S N L  +    +    L     +E+L L         S EPL     
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS-AASCEPLASVLR 167

Query: 66  NHSRLKIFYADNNPINAKITK--SHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLE 123
                K     NN IN    +     L     QL +L L S                 + 
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES---------------CGVT 212

Query: 124 D---VHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSL--AGPFRL---PIHSHRHLRLLD 175
                    I          + +   LR+L+L ++ L   G   L    +H    LR L 
Sbjct: 213 SDNCRDLCGI----------VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 176 VSNNNFQGHIPVEIGDIL---PRLISFNISMNALDGS----IPSSFGNMNL-LQILDLSN 227
           +           ++  +L     L   +++ N L       +  +       L+ L + +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 228 NQLTGEIPEHLA---MGCVNLEFLALSNNSLKG---HMFSR--NFNLINLRWLQLEGNHF 279
              T     H +        L  L +SNN L+        +        LR L L     
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 280 ----VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF 335
                  +  +L    SL  L L+NN L       L               +  P     
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES------------VRQPG---- 426

Query: 336 CHLYSLQILDISDNNIS 352
                L+ L + D   S
Sbjct: 427 ---CLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 36/214 (16%), Positives = 59/214 (27%), Gaps = 60/214 (28%)

Query: 387 SSLVTLDLSYNLLN-GSIPDWIDGLSQLSHLILGNNNLEGEVPVQ-----LCGLNQLQLL 440
             + +LD+    L+     + +  L Q   + L +  L  E   +     L     L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAEL 61

Query: 441 DLSNNNL---------HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKI 491
           +L +N L          GL  P     KL                               
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC------------------------- 96

Query: 492 QEFFEFTTKNIAYIFQG-KVLSLLSGLDLSCNKL-------IGHIPPQVGNLTRIQTLNL 543
                 T      +    + L  L  L LS N L       +           R++ L L
Sbjct: 97  -----LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD--PQCRLEKLQL 149

Query: 544 SHNNLT----GLIPSTFSNLKQIESLDLSYNKLN 573
            + +L+      + S        + L +S N +N
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 51/264 (19%), Positives = 83/264 (31%), Gaps = 49/264 (18%)

Query: 14  LANMTSLRILDVSSNQLTGS----ISSSPLFYLTSIEELSLSNNHFHIPISLEPLF---- 65
           +A+  SLR L + SN+L       +    L   + +  L +             L     
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLR 281

Query: 66  NHSRLKIFYADNNPINAKITK--SHTLTTPKFQLASLSLSSSY---GDGVTFPKFLYYQH 120
               LK      N +  +  +    TL  P  QL SL + S          F   L    
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 121 DLEDVHFSRIQMNGE----FPNWLLENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLR 172
            L ++  S  ++           L +  + LR L L +  +           + ++  LR
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 173 LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTG 232
            LD+SNN         +GD           +  L  S+        LL+ L L +   + 
Sbjct: 402 ELDLSNNC--------LGDA---------GILQLVESVRQ---PGCLLEQLVLYDIYWSE 441

Query: 233 EIPEHLAMGCVNLEFLALSNNSLK 256
           E           L+ L     SL+
Sbjct: 442 E-------MEDRLQALEKDKPSLR 458

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.6 bits (184), Expect = 7e-15
 Identities = 55/235 (23%), Positives = 87/235 (37%), Gaps = 61/235 (25%)

Query: 340 SLQILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
             + LD+  N +S      FH L+ +  ++L+ N L   L  G F    +L TL ++ N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 399 LNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLC-GLNQLQLLDLSNNNLHGLIPPCFD 456
           L  ++P  + D L  L+ L L  N L+  +P ++   L +L  L L  N L  L    FD
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516
                                                                 L+ L  
Sbjct: 155 K-----------------------------------------------------LTSLKE 161

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           L L  N+L   +P      LT ++TL L +N L  +    F +L++++ L L  N
Sbjct: 162 LRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 16/177 (9%)

Query: 291 SSLEGLYLNNNSLSGKIP----RWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQILD 345
           +  + L L +N LS  +P      L  L  L    +  N L+  +P   F  L +L+ L 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLY---LNDNKLQT-LPAGIFKELKNLETLW 91

Query: 346 ISDNNISGSLPSC-FHPLSITQV-HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSI 403
           ++DN +  +LP   F  L       L +N L   L    F + + L  L L YN L  S+
Sbjct: 92  VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SL 148

Query: 404 PDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
           P  + D L+ L  L L NN L+         L +L+ L L NN L  +    FD+ +
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 14/185 (7%)

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNN---SLSGKIPRWLGNLTWLIHIIMPK 324
           + + L L+ N       ++  + + L  LYLN+N   +L   I + L NL  L    +  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VTD 94

Query: 325 NHLEGPIPVE-FCHLYSLQILDISDNNISGSLPS-CFHPLS-ITQVHLSKNMLHGQLKGG 381
           N L+  +P+  F  L +L  L +  N +  SLP   F  L+ +T + L  N L   L  G
Sbjct: 95  NKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 382 TFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLL 440
            F   +SL  L L  N L   +P+   D L++L  L L NN L+         L +L++L
Sbjct: 152 VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 441 DLSNN 445
            L  N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 49/215 (22%), Positives = 75/215 (34%), Gaps = 60/215 (27%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILG 419
           P    ++ L  N L   L    F   + L  L L+ N L  ++P  I   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 420 NNNLEGEVPVQL-CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILF 478
           +N L+  +P+ +   L  L  L L  N L  L P  FD+                     
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------- 131

Query: 479 SIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTR 537
                                           L+ L+ L L  N+L   +P  V   LT 
Sbjct: 132 --------------------------------LTKLTYLSLGYNEL-QSLPKGVFDKLTS 158

Query: 538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
           ++ L L +N L  +    F  L ++++L L  N+L
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 20/172 (11%)

Query: 211 PSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLI 267
             +F  +  L++L L++N+L   +P  +     NLE L +++N L+     +F     L+
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFD---QLV 109

Query: 268 NLRWLQLEGNHFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWL-GNLTWLIHII 321
           NL  L+L+ N       +SL        + L  L L  N L   +P+ +   LT L  + 
Sbjct: 110 NLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELR 163

Query: 322 MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKN 372
           +  N L+      F  L  L+ L + +N +       F  L  +  + L +N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 48/207 (23%), Positives = 69/207 (33%), Gaps = 64/207 (30%)

Query: 386 CS-SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
           C+ +  ++D S   L  +IP  I   +    L L +N L          L +L+LL L++
Sbjct: 14  CNNNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND 70

Query: 445 NNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           N L  L    F                                                 
Sbjct: 71  NKLQTLPAGIFKE----------------------------------------------- 83

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563
                 L  L  L ++ NKL   +P  V   L  +  L L  N L  L P  F +L ++ 
Sbjct: 84  ------LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136

Query: 564 SLDLSYNKLNGKIPH----QLVELKEL 586
            L L YN+L   +P     +L  LKEL
Sbjct: 137 YLSLGYNELQ-SLPKGVFDKLTSLKEL 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 50/243 (20%), Positives = 78/243 (32%), Gaps = 71/243 (29%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP-LFNH-SRLKIFYA 75
              + LD+ SN+L+ S+ S     LT +  L L++N      +L   +F     L+  + 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
            +N                 +L +L                                   
Sbjct: 93  TDN-----------------KLQAL----------------------------------- 100

Query: 136 FPNWLLENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
            P  + +    L +L L  + L       F     S   L  L +  N  Q  +P  + D
Sbjct: 101 -PIGVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 192 ILPRLISFNISMNALDGSIPSS-FGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
            L  L    +  N L   +P   F  +  L+ L L NNQL   +PE        L+ L L
Sbjct: 155 KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQL 212

Query: 251 SNN 253
             N
Sbjct: 213 QEN 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 46/215 (21%), Positives = 73/215 (33%), Gaps = 61/215 (28%)

Query: 387 SSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSN 444
           S    LDLS+N L+    +W    L+ L  L+L +N+L   +  +    +  L+ LDLS+
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 445 NNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           N+LH L    F +                                               
Sbjct: 98  NHLHTLDEFLFSD----------------------------------------------- 110

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSN---LK 560
                 L  L  L L  N  I  +      ++ ++Q L LS N ++        +   L 
Sbjct: 111 ------LQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 561 QIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN 595
           ++  LDLS NKL       L +L       +  +N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 14/166 (8%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLINLRWLQLEG 276
             +LDLS+N L+    E       NL  L LS+N L       F     + NLR+L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-- 334
           NH         S   +LE L L NN +         ++  L  + + +N +    PVE  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 335 --FCHLYSLQILDISDNNISGSLPSCFHPLS---ITQVHLSKNMLH 375
                L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 64/213 (30%)

Query: 391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNNNLHG 449
            L  S   L  ++P  +   S  + L L +NNL           L  L  L LS+N+L+ 
Sbjct: 22  ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 450 LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGK 509
           +    F                                                      
Sbjct: 79  ISSEAFVP---------------------------------------------------- 86

Query: 510 VLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
            +  L  LDLS N L   +   +  +L  ++ L L +N++  +  + F ++ Q++ L LS
Sbjct: 87  -VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 569 YNKLNGKIPHQ----LVELKELAVFSVAYNNLS 597
            N+++ + P +      +L +L +  ++ N L 
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 35/262 (13%), Positives = 75/262 (28%), Gaps = 87/262 (33%)

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN 372
                ++ ++ ++       +    + SL  + +++ N++                    
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-------------------- 57

Query: 373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432
                L G       ++  L ++        P  I GLS L  L +   ++  +    L 
Sbjct: 58  ----DLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQ 492
           GL  L LLD+S++     I    +                                    
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINT----------------------------------- 134

Query: 493 EFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLI 552
                             L  ++ +DLS N  I  I P +  L  +++LN+  + +    
Sbjct: 135 ------------------LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 553 PSTFSNLKQIESLDLSYNKLNG 574
                +  ++  L      + G
Sbjct: 176 G--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 6/142 (4%)

Query: 212 SSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW 271
           +     + ++ L ++N   T      ++ G  NLE L +    +          L +L  
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
           L +  +     I   ++    +  + L+ N     I   L  L  L  + +  + +    
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 332 PVEFCHLYSLQILDISDNNISG 353
            +E      L  L      I G
Sbjct: 176 GIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 31/183 (16%)

Query: 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324
            + +L ++ L   + V ++   +    +++ L +NN   +   P  +  L+ L  + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFF 384
             +          L SL +LDIS +    S+ +  +                        
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN------------------------ 133

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
               + ++DLSYN     I   +  L +L  L +  + +       +    +L  L   +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 445 NNL 447
             +
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 213 SFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272
           +   MN L  + L+N  +T ++   +     N++ L ++N       ++    L NL  L
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP 332
           ++ G     +   +LS  +SL  L +++++    I   +  L  +  I +  N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 333 VEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTL 392
                L  L+ L+I  + +       +  +                      +   L  L
Sbjct: 154 -PLKTLPELKSLNIQFDGVHD-----YRGIE---------------------DFPKLNQL 186

Query: 393 DLSYNLLNG 401
                 + G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           LS L  L +    +     P +  LT +  L++SH+     I +  + L ++ S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLS 597
                I   L  L EL   ++ ++ + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
              +  L ++      +  P +  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEI 600
             +  I  ++  L ++    ++YN    +I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 28/190 (14%), Positives = 65/190 (34%), Gaps = 29/190 (15%)

Query: 263 NFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIM 322
           N      +               + ++ +SL  + L N +++      +     +  + +
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTI 73

Query: 323 PKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT 382
              H     P+    L +L+ L I   +++         L+                   
Sbjct: 74  NNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLT------------------- 112

Query: 383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442
                SL  LD+S++  + SI   I+ L +++ + L  N    ++   L  L +L+ L++
Sbjct: 113 -----SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNI 166

Query: 443 SNNNLHGLIP 452
             + +H    
Sbjct: 167 QFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
            +    S+   +  +  +  +D+S N     I   PL  L  ++ L++  +  H      
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVH---DYR 175

Query: 63  PLFNHSRLKIFYADNNPIN 81
            + +  +L   YA +  I 
Sbjct: 176 GIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           ++ L+ + L+    +  +   +     I+ L +++ + T    +  S L  +E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPE 602
            +       L  L  L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 39/225 (17%), Positives = 67/225 (29%), Gaps = 75/225 (33%)

Query: 15  ANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFY 74
           A M SL  + +++  +T     + + Y  +I++L+++N H     +  P+   S L+   
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 75  ADNNPI-NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
                + + KI     LT     L  L +S S  D     K                   
Sbjct: 95  IMGKDVTSDKIPNLSGLT----SLTLLDISHSAHDDSILTK------------------- 131

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI- 192
                  +    K+  + L                        S N         I DI 
Sbjct: 132 -------INTLPKVNSIDL------------------------SYNG-------AITDIM 153

Query: 193 ----LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE 233
               LP L S NI  + +         +   L  L   +  + G+
Sbjct: 154 PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/142 (16%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           +    +++ L +++   T   + +P+  L+++E L +          +  L   + L + 
Sbjct: 62  IEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLL 117

Query: 74  YADNNPI-NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQM 132
              ++   ++ +TK +TL     ++ S+ LS +    +T    L    +L+ ++     +
Sbjct: 118 DISHSAHDDSILTKINTLP----KVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGV 171

Query: 133 NGEFPNWLLENNTKLRQLSLVN 154
           +       +E+  KL QL   +
Sbjct: 172 HDYRG---IEDFPKLNQLYAFS 190

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 1e-12
 Identities = 42/273 (15%), Positives = 83/273 (30%), Gaps = 15/273 (5%)

Query: 326 HLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFN 385
                                 ++ +           S +Q          +        
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347

Query: 386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445
              L   +LS       +   ++   +L  L   N      + + +  L+ L     +  
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 446 NLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYI 505
               L     D  +     +  S    +  +L         +E           K++  +
Sbjct: 407 YFSTLK--AVDPMRAAYLDDLRSKFLLENSVL--------KMEYADVRVLHLAHKDLTVL 456

Query: 506 FQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESL 565
              + L L++ LDLS N+L   +PP +  L  ++ L  S N L  +     +NL +++ L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQEL 513

Query: 566 DLSYNKLNG-KIPHQLVELKELAVFSVAYNNLS 597
            L  N+L        LV    L + ++  N+L 
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 6e-08
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 161 FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLL 220
             +    +  +R+L +++ +      +   + L  +   ++S N L  ++P +   +  L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGN 277
           ++L  S+N L   +   +A     L+ L L NN L+     +   +   L  L L+GN
Sbjct: 489 EVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 3   DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLE 62
            N LR +LP  LA +  L +L  S N L    +   +  L  ++EL L NN      +++
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 63  PLFNHSRLKIFYADNNPI 80
           PL +  RL +     N +
Sbjct: 528 PLVSCPRLVLLNLQGNSL 545

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 50/293 (17%), Positives = 97/293 (33%), Gaps = 57/293 (19%)

Query: 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
               +++   P     L   I I   K+++   +      L  +  L      ++ ++  
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG 58

Query: 358 CFHPLSITQVHLSKNMLHGQLKGGTFF-NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL 416
             +  ++  + L  N    Q+       N + +  L+LS N L  ++   I GL  +  L
Sbjct: 59  VQYLNNLIGLELKDN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTL 112

Query: 417 ILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---SYNNSSSPDEQ 473
            L +  +    P  L GL+ LQ+L L  N +   I P    T L                
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNA-------- 161

Query: 474 FKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG 533
                           ++ +                 LS L+ L    NK I  I P + 
Sbjct: 162 ----------------QVSDLTPLAN-----------LSKLTTLKADDNK-ISDISP-LA 192

Query: 534 NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKEL 586
           +L  +  ++L +N ++ + P   +N   +  + L+   +  +       L   
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 53/289 (18%)

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
               ++   +    ++++  +     +L  +  +      +     V+  +L +L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406
            DN I+  L    +   IT++ LS N L   +         S+ TLDL+   +    P  
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQITDVTP-- 124

Query: 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---S 463
           + GLS L  L L  N +    P  L GL  LQ L + N  +   + P  + +KL      
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKAD 181

Query: 464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK 523
            N           +  I                              L  L  + L  N+
Sbjct: 182 DNK----------ISDISPLAS-------------------------LPNLIEVHLKNNQ 206

Query: 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
            I  + P + N + +  + L++  +T       +NL     +       
Sbjct: 207 -ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 31/218 (14%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             ++ + +    + +  ++      L  ++ L      +       +  LN L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 445 NNLHGLIPPCFDNTKLHE---SYNNSS--SPDEQFKILFSIKGHQGHVEKKIQEFFEFTT 499
           N +   + P  + TK+ E   S N     S     + +               +  + T+
Sbjct: 73  NQITD-LAPLKNLTKITELELSGNPLKNVSAIAGLQSI---------------KTLDLTS 116

Query: 500 KNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNL 559
             I  +     LS L  L L  N+ I +I P +  LT +Q L++ +  ++ L P   +NL
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANL 172

Query: 560 KQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
            ++ +L    NK++  I   L  L  L    +  N +S
Sbjct: 173 SKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 61/296 (20%)

Query: 13  CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKI 72
               + +   +    + +T    +     L  I  LS          ++E +   + L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 73  FYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQM 132
               +N I   +     LT    ++  L LS                + L++V       
Sbjct: 68  LELKDNQIT-DLAPLKNLT----KITELELSG---------------NPLKNVSA----- 102

Query: 133 NGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
                   +     ++ L L +  +      P+    +L++L +  N         I +I
Sbjct: 103 --------IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQ--------ITNI 144

Query: 193 -----LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247
                L  L   +I    +  S  +   N++ L  L   +N+++ +I         NL  
Sbjct: 145 SPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISPL--ASLPNLIE 199

Query: 248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
           + L NN +     S   N  NL  + L       +     +       +   + + 
Sbjct: 200 VHLKNNQIS--DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 52/261 (19%), Positives = 88/261 (33%), Gaps = 56/261 (21%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           +  + +L  L++  NQ+T     +PL  LT I EL LS N      ++  +     +K  
Sbjct: 59  VQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTL 112

Query: 74  YADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
              +  I   +T    L+     L  L L  +                + ++        
Sbjct: 113 DLTSTQIT-DVTPLAGLS----NLQVLYLDLN---------------QITNISP------ 146

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI- 192
                  L   T L+ LS+ N  ++     P+ +   L  L   +N         I DI 
Sbjct: 147 -------LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK--------ISDIS 189

Query: 193 ----LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL 248
               LP LI  ++  N +  S  S   N + L I+ L+N  +T +   +     V     
Sbjct: 190 PLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

Query: 249 ALSNNSLKGHMFSRNFNLINL 269
             S   +     S N    + 
Sbjct: 248 GPSGAPIAPATISDNGTYASP 268

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILG 419
           P +IT++ L +N +   +  G F     L  +DLS N ++  +      GL  L+ L+L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNN-SSSPDEQF 474
            N +         GL  LQLL L+ N ++ L    F +      L    N   +     F
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 475 KILFSIK 481
             L +I+
Sbjct: 149 SPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 211 PSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLI 267
           P +F     L+ +DLSNNQ++ E+      G  +L  L L  N +      +F     L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG---LF 104

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
           +L+ L L  N        +     +L  L L +N L          L  +  +
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 35/183 (19%), Positives = 55/183 (30%), Gaps = 59/183 (32%)

Query: 391 TLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLC-GLNQLQLLDLSNNNLH 448
            + L  N +   IP        +L  + L NN +  E+      GL  L  L L  N + 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 449 GLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQG 508
            L    F+                                                    
Sbjct: 94  ELPKSLFEG--------------------------------------------------- 102

Query: 509 KVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
             L  L  L L+ NK+   +      +L  +  L+L  N L  +   TFS L+ I+++ L
Sbjct: 103 --LFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159

Query: 568 SYN 570
           + N
Sbjct: 160 AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 8/143 (5%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYS 340
           EIP +L    ++  + L  N++    P        L  I +  N +   +  + F  L S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 341 LQILDISDNNISGSLPS-CFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL 398
           L  L +  N I+  LP   F  L S+  + L+ N ++  L+   F +  +L  L L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 399 LNGSIPDWIDGLSQLSHLILGNN 421
           L          L  +  + L  N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 32/156 (20%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGN 277
             + L  N +   IP         L  + LSNN +       F     L +L  L L GN
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 278 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCH 337
                         SL+ L LN N ++  +                           F  
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDA-----------------------FQD 126

Query: 338 LYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKN 372
           L++L +L + DN +       F PL +I  +HL++N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563
            FQG  L  L+ L L  NK+   +P  +   L  +Q L L+ N +  L    F +L  + 
Sbjct: 75  AFQG--LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 564 SLDLSYNKL 572
            L L  NKL
Sbjct: 132 LLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPS-SFGNMNLLQILDLSNNQLTG 232
           + +  N  +  IP        +L   ++S N +   +   +F  +  L  L L  N++T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 233 EIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSK 289
           E+P+ L  G  +L+ L L+ N    L+   F    +L NL  L L  N        + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 290 CSSLEGLYLNNN 301
             +++ ++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL--- 572
           + L  N  I  IPP       +++ ++LS+N ++ L P  F  L+ + SL L  NK+   
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 573 NGKIPHQLVELKEL 586
              +   L  L+ L
Sbjct: 96  PKSLFEGLFSLQLL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP----HQLVE 582
           ++P  +        + L  N +  + P  FS  K++  +DLS N+++ ++       L  
Sbjct: 29  NLPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 583 LKELAVFSVAYNNLS 597
           L  L    +  N ++
Sbjct: 82  LNSL---VLYGNKIT 93

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 27/211 (12%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFN-LINLRWLQLEGNHF 279
              +L    +T  + ++      +++ +  +N+ +K     +    L N+R+L L GN  
Sbjct: 22  IKANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL 75

Query: 280 VGEIPQSLS---KCSSLEGLYLNNN---SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPV 333
                  +S   + ++L  L L  N   SL   +   L NL  L+   + +N L+     
Sbjct: 76  -----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---LVENQLQSLPDG 127

Query: 334 EFCHLYSLQILDISDNNISGSLPS-CFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVT 391
            F  L +L  L+++ N +  SLP   F  L+ +T++ LS N L   L  G F   + L  
Sbjct: 128 VFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKD 185

Query: 392 LDLSYNLLNGSIPDWI-DGLSQLSHLILGNN 421
           L L  N L  S+PD + D L+ L ++ L +N
Sbjct: 186 LRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 288 SKCS-SLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
                      L   S++  + +    L  +  II   + ++        +L +++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 347 SDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPD 405
             N +   + +    L ++T + L+ N L   L  G F   ++L  L L  N L  S+PD
Sbjct: 71  GGNKLH-DISA-LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 406 WI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN-TKL 460
            + D L+ L++L L +N L+         L  L  LDLS N L  L    FD  T+L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 53/213 (24%)

Query: 385 NCS-SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS 443
           +     +  +L    +        + L+ +  +I  N++++    +Q   L  ++ L L 
Sbjct: 16  DAFAETIKANLKKKSVT-DAVTQ-NELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALG 71

Query: 444 NNNLHGLIPPCFDN----TKLHESYNNSSS-PDEQFKILFSIKGHQGHVEKKIQEFFEFT 498
            N LH +           T L  + N   S P+                           
Sbjct: 72  GNKLHDI--SALKELTNLTYLILTGNQLQSLPNG-------------------------- 103

Query: 499 TKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGN-LTRIQTLNLSHNNLTGLIPSTFS 557
                 +F    L+ L  L L  N+L   +P  V + LT +  LNL+HN L  L    F 
Sbjct: 104 ------VFDK--LTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154

Query: 558 NLKQIESLDLSYNKLNGKIPH----QLVELKEL 586
            L  +  LDLSYN+L   +P     +L +LK+L
Sbjct: 155 KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 48/271 (17%), Positives = 81/271 (29%), Gaps = 53/271 (19%)

Query: 216 NMNLLQILDLSNNQLTGEIPEHLAMG---CVNLEFLALSNNSL--KGHMFSRNFNLI--- 267
             + ++ + LS N +  E    L+       +LE    S+               L+   
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 268 -----NLRWLQLEGNHF----VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLI 318
                 L  ++L  N F       +   LSK + LE LYL+NN L  +    +     L 
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQ 147

Query: 319 HIIMPKNHLEGPIPVEFCHLYSLQILDISDNNI--------SGSLPSCFHPLSITQVHLS 370
            + + K     P          L+ +    N +        + +  S      +  V + 
Sbjct: 148 ELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMV 195

Query: 371 KNMLH----GQLKGGTFFNCSSLVTLDLSYNLLNG----SIPDWIDGLSQLSHLILGNNN 422
           +N +       L       C  L  LDL  N        ++   +     L  L L +  
Sbjct: 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

Query: 423 LEGEVPVQL------CGLNQLQLLDLSNNNL 447
           L       +           LQ L L  N +
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 50/392 (12%), Positives = 104/392 (26%), Gaps = 121/392 (30%)

Query: 220 LQILDLSNNQLTGEIPEHLA---MGCVNLEFLALSNNSLK-------GHMFSRNFNLINL 269
           ++   L  + +T E  + +    +   +++ + LS N++            +   +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 270 RWLQLEGNHFVGEIP-------QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIM 322
            +  +       EIP       Q+L KC  L  + L++N+        L +         
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-------- 117

Query: 323 PKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT 382
                             L+ L + +N +    P     ++          L        
Sbjct: 118 ------------LSKHTPLEHLYLHNNGLG---PQAGAKIA--------RALQELAVNKK 154

Query: 383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442
             N   L ++    N L          + + +     +  L                + +
Sbjct: 155 AKNAPPLRSIICGRNRLEN------GSMKEWAKTFQSHRLLH--------------TVKM 194

Query: 443 SNNN---------LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQE 493
             N          L   +  C +   L    N                            
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT--------------------------- 227

Query: 494 FFEFTTKNIAYIFQG-KVLSLLSGLDLSCNKL-------IGHIPPQVGNLTRIQTLNLSH 545
              FT    + +    K    L  L L+   L       +     ++ N+  +QTL L +
Sbjct: 228 ---FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQY 283

Query: 546 NNLT-----GLIPSTFSNLKQIESLDLSYNKL 572
           N +       L       +  +  L+L+ N+ 
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 44/279 (15%), Positives = 76/279 (27%), Gaps = 73/279 (26%)

Query: 141 LENNTKLRQLSLVNDSL----AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRL 196
           L    KL  + L +++       P    +  H  L  L + NN         +G      
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG--------LGPQAGAK 141

Query: 197 ISFNISMNALDGSIPSSFGNMNL-LQILDLSNNQLTGEIPEHLAMG---CVNLEFLALSN 252
           I+      AL     +        L+ +    N+L     +  A        L  + +  
Sbjct: 142 IA-----RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 253 NSLK--------GHMFSRNFNLINLRWLQLEGNHF----VGEIPQSLSKCSSLEGLYLNN 300
           N ++            +       L+ L L+ N F       +  +L    +L  L LN+
Sbjct: 197 NGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253

Query: 301 NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH 360
             LS +     G    +      +N               LQ L +  N I         
Sbjct: 254 CLLSAR-----GAAAVVDAFSKLENI-------------GLQTLRLQYNEIELD------ 289

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
                   L   +               L+ L+L+ N  
Sbjct: 290 ----AVRTLKTVIDE---------KMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 37/201 (18%)

Query: 140 LLENNTKLRQLSLVNDSL-------------AGPFRLPIHSHRHLRLLDVSNNNFQGHIP 186
            L  +T L  L L N+ L                      +   LR +    N  +    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 187 VEIGDIL---PRLISFNISMNAL-----DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
            E          L +  +  N +     +  +         L++LDL +N  T      L
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 239 AMG---CVNLEFLALSNNSLK-------GHMFSRNFNLINLRWLQLEGNHF----VGEIP 284
           A+      NL  L L++  L           FS+  N+  L+ L+L+ N      V  + 
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEIELDAVRTLK 295

Query: 285 QSL-SKCSSLEGLYLNNNSLS 304
             +  K   L  L LN N  S
Sbjct: 296 TVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 33/267 (12%), Positives = 71/267 (26%), Gaps = 75/267 (28%)

Query: 339 YSLQILDISDNNISGS-----LPSCFHPLSITQVHLSKNMLHGQLKGGTFF-----NCSS 388
           +S++   +  + I+               S+ ++ LS N +    +   +      +   
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--GTEAARWLSENIASKKD 61

Query: 389 LVTLDLSYNLLNGSIPDWIDGL----------SQLSHLILGNNNLEGEVPVQLCGL---- 434
           L   + S         +  + L           +L  + L +N         L       
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 435 NQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF 494
             L+ L L NN L                                  G Q        + 
Sbjct: 122 TPLEHLYLHNNGL----------------------------------GPQA-----GAKI 142

Query: 495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKL----IGHIPPQVGNLTRIQTLNLSHNNLT- 549
                + +A   + K    L  +    N+L    +        +   + T+ +  N +  
Sbjct: 143 AR-ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 550 ----GLIPSTFSNLKQIESLDLSYNKL 572
                L+    +  ++++ LDL  N  
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 44/279 (15%), Positives = 87/279 (31%), Gaps = 56/279 (20%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSP---------LFYLTSIEELSLSNNHFH----IPIS 60
           +A+   L I + S           P         L     +  + LS+N F      P+ 
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 61  LEPLFNHSRLKIFYADNNPINAKITK--SHTLTTPKFQLASLSLSSSYGDGVTFPKFLYY 118
            + L  H+ L+  Y  NN +  +     +  L        + +                 
Sbjct: 116 -DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-------------- 160

Query: 119 QHDLEDVHFSRIQMNGEFPNWL---LENNTKLRQLSLVNDSL-----AGPFRLPIHSHRH 170
              L  +   R ++            +++  L  + +V + +            +   + 
Sbjct: 161 ---LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217

Query: 171 LRLLDVSNNNFQGHIPVEIGDIL---PRLISFNISMNAL--DGSIP-----SSFGNMNLL 220
           L++LD+ +N F       +   L   P L    ++   L   G+       S   N+ L 
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL- 276

Query: 221 QILDLSNNQLTGE----IPEHLAMGCVNLEFLALSNNSL 255
           Q L L  N++  +    +   +     +L FL L+ N  
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 49/292 (16%), Positives = 97/292 (33%), Gaps = 53/292 (18%)

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
               +      L   S++  +      L  +  II   + ++    ++  +L ++  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406
           + N ++  +    +  ++  + L +N +   L      +   L +L L +N ++  I   
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGIS-DING- 129

Query: 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---S 463
           +  L QL  L LGNN +       L  L +L  L L +N +   I P    TKL     S
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLS 186

Query: 464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK 523
            N+ S                      ++                  L  L  L+L   +
Sbjct: 187 KNHISD---------------------LRAL--------------AGLKNLDVLELFSQE 211

Query: 524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
            +        NL    T+  +  +L    P   S+    E  ++ ++     
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 50/280 (17%), Positives = 86/280 (30%), Gaps = 53/280 (18%)

Query: 296 LYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSL 355
                  +              I   + K  +   +      L S+  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 356 PSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSH 415
               +  ++T++ L+ N L   +K     N  +L  L L  N +   +   +  L +L  
Sbjct: 62  QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKS 116

Query: 416 LILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE---SYNNSSSPDE 472
           L L +N +       L  L QL+ L L NN +   I      TKL       N       
Sbjct: 117 LSLEHNGISDING--LVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQ------ 167

Query: 473 QFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV 532
                                        I+ I     L+ L  L LS N  I  +   +
Sbjct: 168 -----------------------------ISDIVPLAGLTKLQNLYLSKNH-ISDLRA-L 196

Query: 533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKL 572
             L  +  L L          +  SNL    ++  +   L
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 45/233 (19%), Positives = 85/233 (36%), Gaps = 31/233 (13%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             +  +  +L    +  ++    + L+ +  +I  N++++    +Q   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 445 NNLHGLIPPCFDNTKLHE---SYNN--SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTT 499
           N L   I P  +   L       N     S  +  K L               +      
Sbjct: 78  NKLTD-IKPLANLKNLGWLFLDENKVKDLSSLKDLKKL---------------KSLSLEH 121

Query: 500 KNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNL 559
             I+ I     L  L  L L  NK I  I   +  LT++ TL+L  N ++ ++P   + L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 560 KQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNE 612
            ++++L LS N ++      L  LK L V  +       +    ++     N 
Sbjct: 178 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 48/294 (16%), Positives = 93/294 (31%), Gaps = 73/294 (24%)

Query: 13  CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKI 72
               + S+  +  +++ +    S   + YL ++ +L L+ N       ++PL N   L  
Sbjct: 41  TQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNKL---TDIKPLANLKNLGW 94

Query: 73  FYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQM 132
            + D N +   ++    L     +L SLSL                 + + D++      
Sbjct: 95  LFLDENKVK-DLSSLKDLK----KLKSLSLEH---------------NGISDING----- 129

Query: 133 NGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
                   L +  +L  L L N+ +       +     L  L + +N         I DI
Sbjct: 130 --------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ--------ISDI 171

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
                                   +  LQ L LS N ++ ++      G  NL+ L L +
Sbjct: 172 -------------------VPLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFS 209

Query: 253 NSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK 306
                   +   NL+    ++      V   P+ +S     E   +  +     
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 26/217 (11%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI-----LPR 195
           ++    + +L L  + L      P+ + ++L  L +  N         + D+     L +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255
           L S ++  N +  S  +   ++  L+ L L NN++T      L+     L+ L+L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 168

Query: 256 KGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 315
                     L  L+ L L  NH + ++ ++L+   +L+ L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 316 WLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352
               +      L  P  +        +  ++  +   
Sbjct: 225 VPNTVKNTDGSLVTPEIIS--DDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 27/188 (14%)

Query: 414 SHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP-PCFDN-TKLHESYNN--SSS 469
           S  I     ++           +    +L   ++   +     ++  ++  + ++  S  
Sbjct: 5   SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP 529
             +    +                        +  I     L  L  L L  NK +  + 
Sbjct: 63  GIQYLPNV---------------TKLFLNGNKLTDIKPLANLKNLGWLFLDENK-VKDLS 106

Query: 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589
             + +L ++++L+L HN ++ +      +L Q+ESL L  NK+       L  L +L   
Sbjct: 107 S-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTL 161

Query: 590 SVAYNNLS 597
           S+  N +S
Sbjct: 162 SLEDNQIS 169

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 56/459 (12%), Positives = 134/459 (29%), Gaps = 58/459 (12%)

Query: 163 LPIHSHRHLRLLDVSNNNFQGHIPVEIGDI---LPRLISFNIS-MNALDGSIPS-SFGNM 217
           L +       + ++   N+ G++   + +I   L +L S +   M   D  +   +    
Sbjct: 78  LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137

Query: 218 NLLQILDLSN-NQLTGEIPEHLAMGCVNLEFLALSNNSL--KGHMFSRNF--NLINLRWL 272
           + L+ L L   +  T +    +   C  ++ L +  +S   K   +      +  +L  L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 273 QLEGNHFVGEIPQSL----SKCSSLEGLYLNNNSLS-----GKIPRWLGNLTWLIHIIMP 323
                 F    P+ L      C SL  + + +  +       K    L            
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257

Query: 324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTF 383
               +    V    L  L +  +  N +    P       I ++ L   +L  +      
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ---IRKLDLLYALLETEDHCTLI 314

Query: 384 FNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLN-------- 435
             C +L  L+    + +  +        QL  L +     E  +  +   ++        
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 436 ----QLQLLDLSNNN-----LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH 486
               +L+ + +  ++     L  +     +         +         +   ++     
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434

Query: 487 VEKKIQEF------FEFTTKNIAYIFQGKVLSLLSGLDLSCNKL----IGHIPPQVGNLT 536
             KK++ F         T   ++YI  G+    +  + L         +           
Sbjct: 435 C-KKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVGESDEGLMEF---SRGCP 488

Query: 537 RIQTLNLSHNNLT--GLIPSTFSNLKQIESLDLSYNKLN 573
            +Q L +     +   +  +  + L  +  L +   + +
Sbjct: 489 NLQKLEMRGCCFSERAIA-AAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 68/472 (14%), Positives = 139/472 (29%), Gaps = 69/472 (14%)

Query: 13  CLANMTSLRILDVSSNQLT-GSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSR-L 70
              N+  L+ +      ++   +          +E L L          L  +  H R +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166

Query: 71  KIFYADNNPINAKITKS-HTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSR 129
           K    + +  + K  K  H L      L  L+   +    ++         DLE      
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-------KDLE------ 213

Query: 130 IQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEI 189
                     +  N   L  + + +  +         +  +L      + N    +P + 
Sbjct: 214 ---------TIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKY 263

Query: 190 GDI--LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF 247
            ++    +L    +S       +P  F     ++ LDL    L  E    L   C NLE 
Sbjct: 264 MNLVFPRKLCRLGLS-YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSK------------CSSLEG 295
           L   N      +         L+ L++E       +                  C  LE 
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 296 LYLNNNSLSGK----IPRWLGNLTWLIHIIMPKNH------LEGPIPVEFCHLYSLQILD 345
           + +  + ++ +    I  +L NL     +++ +        L+  +         L+   
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442

Query: 346 -------ISDNNIS--GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY 396
                  ++D  +S  G        + +  V  S   L    +G     C +L  L++  
Sbjct: 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG-----CPNLQKLEMRG 497

Query: 397 -NLLNGSIPDWIDGLSQLSHLILGNNNL--EGEVPVQL-CGLNQLQLLDLSN 444
                 +I   +  L  L +L +        G+  +Q+      ++L+    
Sbjct: 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
              L+ L +   + + H+  +    L  ++ L +  + L  + P  F    ++  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 570 NKLNGKIPHQLVELKELAVFSVAYNNL 596
           N L   +  + V+   L    ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTWLIHIIMPKNHLEGPIPVEFCHLYS 340
           +    L    +L  LY+ N      +    L  L  L ++ + K+ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 341 LQILDISDNNISGSLPSCFHPLSITQVHLSKNMLH 375
           L  L++S N +          LS+ ++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 9e-08
 Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFN 265
                      L  L + N Q    +      G   L  L +  + L+      F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 266 LINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
              L  L L  N     +     +  SL+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 387 SSLVTLDLSYNLLNGSIPDW-IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445
            +L  L +        +    + GL +L +L +  + L    P       +L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 446 NLHGLIPPCFDNTKLHE 462
            L  L         L E
Sbjct: 91  ALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS 395
           C  +    L  + +    SL       ++T++++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 396 YNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
            + L    PD      +LS L L  N LE      + GL+ LQ L LS N LH
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 518 DLSC-NKLIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNLKQIESLDLSYNKLNGK 575
            L C           +     +  L + +   L  L       L ++ +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 576 IPHQLVELKELAVFSVAYNNLS 597
            P        L+  ++++N L 
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNN 228
            +L  L + N     H+ +     L  L +  I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 229 QLTGEIPEHLAMGCVNLEFLALSNNSL 255
            L     + +    ++L+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSN 444
                 L  + +         + G   L+ L + N      +    L GL +L+ L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 445 NNLHGLIPPCFDNTK----LHESYNN-SSSPDEQFKIL 477
           + L  + P  F  T     L+ S+N   S   +  + L
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 25/149 (16%), Positives = 37/149 (24%), Gaps = 55/149 (36%)

Query: 426 EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQG 485
           +    L G   L  L + N      +                                  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLEL-------------------------------- 49

Query: 486 HVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLS 544
                                +G  L  L  L +  +  +  + P       R+  LNLS
Sbjct: 50  ------------------RDLRG--LGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS 88

Query: 545 HNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
            N L  L   T   L  ++ L LS N L+
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE 233
           L ++NN F       I   LP+L   N S N +      +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 234 IPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKC 290
           +   +  G  +L+ L L +N    +    F     L ++R L L  N      P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 291 SSLEGLYLNNN 301
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILG 419
           P    ++ L+ N        G F     L  ++ S N +   I +   +G S ++ ++L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 420 NNNLEGEVPVQLC-GLNQLQLLDLSNNNLHGLIPPCFDN----TKLHESYNN-SSSPDEQ 473
           +N LE  V  ++  GL  L+ L L +N +  +    F        L    N  ++     
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 474 FKILFSIK 481
           F  L S+ 
Sbjct: 149 FDTLHSLS 156

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 56/182 (30%)

Query: 391 TLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG 449
            L L+ N         I   L QL  +   NN +         G + +  + L++N L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 450 LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGK 509
           +    F                                                      
Sbjct: 96  VQHKMFKG---------------------------------------------------- 103

Query: 510 VLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
            L  L  L L  N++   +       L+ ++ L+L  N +T + P  F  L  + +L+L 
Sbjct: 104 -LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161

Query: 569 YN 570
            N
Sbjct: 162 AN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 291 SSLEGLYLNNNSLSGKIPR-WLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDN 349
                L LNNN  +          L  L  I    N +       F     +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 350 NISGSLPS-CFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI 407
            +  ++    F  L S+  + L  N +   +   +F   SS+  L L  N +  ++    
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 408 -DGLSQLSHLILGNN 421
            D L  LS L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
            S ++ + L+ N+L   +  ++   L  ++TL L  N +T +   +F  L  +  L L  
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 570 NKL 572
           N++
Sbjct: 139 NQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 8/152 (5%)

Query: 224 DLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNHFVGE 282
           D SN +L  +IPEH+         L L+NN       +  F  L  LR +    N     
Sbjct: 17  DCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 283 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSL 341
              +    S +  + L +N L     +    L  L  +++  N +   +  + F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 342 QILDISDNNISGSLPSCFHPL-SITQVHLSKN 372
           ++L + DN I+   P  F  L S++ ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGN 277
             L L+NN+ T      +      L  +  SNN +       F        +  + L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 278 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCH 337
                  +      SL+ L L +N ++         L+ +  + +  N +    P  F  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 338 LYSLQILDISDN 349
           L+SL  L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 517 LDLSCNKLIGHIPPQVG--NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574
           L L+ N+    +        L +++ +N S+N +T +    F     +  + L+ N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 575 KIP----HQLVELKEL 586
            +       L  LK L
Sbjct: 96  -VQHKMFKGLESLKTL 110

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 294 EGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISG 353
           E L L +  L+         LT L  + +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 354 SLPS-CFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGL 410
           SLP   F  L  + +++L  N L   L  G F   + L  L L+ N L  SIP    D L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 411 SQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445
           + L  L L  N L+         L +LQ + L  N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPS-CFHPL-SITQVHLSKNMLHGQLKGGT 382
             L       F  L  L  L++  N +  +L +  F  L  +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 383 FFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCG----LNQL 437
           F + + L  L L  N L  S+P  + D L++L  L L  N L+  +P    G    L  L
Sbjct: 103 FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPA---GAFDKLTNL 157

Query: 438 QLLDLSNNNLHGLIPPCFDNTK 459
           Q L LS N L  +    FD   
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLG 179

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNN---SLSGKIPRWLGNLTWLIHIIMPKNHLE 328
           L L+          +    + L  L L+ N   +LS  +   L  L  L    +  N L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL---GLANNQLA 96

Query: 329 GPIPVEFCHLYSLQILDISDNNISGSLPS-CFHPL-SITQVHLSKNMLHGQLK---GGTF 383
                 F HL  L  L +  N +  SLPS  F  L  + ++ L+ N    QL+    G F
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN----QLQSIPAGAF 151

Query: 384 FNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNN 421
              ++L TL LS N L  S+P    D L +L  + L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 44/188 (23%), Positives = 64/188 (34%), Gaps = 56/188 (29%)

Query: 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI 451
           LDL    L         GL++L+ L L  N L+         L +L  L L+NN L  L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 452 PPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVL 511
              FD+                                                     L
Sbjct: 100 LGVFDH-----------------------------------------------------L 106

Query: 512 SLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           + L  L L  N+L   +P  V   LT+++ L L+ N L  +    F  L  +++L LS N
Sbjct: 107 TQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165

Query: 571 KLNGKIPH 578
           +L   +PH
Sbjct: 166 QLQS-VPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 204 NALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMF 260
             L     ++F  +  L  L+L  NQL   +   +      L  L L+NN L      +F
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVF 103

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLG--- 312
                L  L  L L GN       +SL      + + L+ L LN N L   IP   G   
Sbjct: 104 DH---LTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAFD 152

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDN 349
            LT L  + +  N L+      F  L  LQ + +  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN--- 573
           LDL    L          LT++  LNL +N L  L    F +L ++ +L L+ N+L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 574 GKIPHQLVELKEL 586
             +   L +L +L
Sbjct: 100 LGVFDHLTQLDKL 112

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563
           +F    L+ L  L L+ N+L   +P  V  +LT++  L L  N L  L    F  L +++
Sbjct: 78  VFDD--LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134

Query: 564 SLDLSYNKLNGKIPH----QLVELKELAVFSVAYNNLSGEIPE 602
            L L+ N+L   IP     +L  L+ L++      N    +P 
Sbjct: 135 ELRLNTNQLQ-SIPAGAFDKLTNLQTLSL----STNQLQSVPH 172

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 64/323 (19%), Positives = 105/323 (32%), Gaps = 82/323 (25%)

Query: 165 IHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILD 224
                 +  LD+S NN        +  I    +    +                 +  L+
Sbjct: 18  TSIPHGVTSLDLSLNN--------LYSISTVELIQAFA------------NTPASVTSLN 57

Query: 225 LSNNQLTGE----IPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFNLIN--LRWLQLE 275
           LS N L  +    + + LA    N+  L LS N L         +    I   +  L L 
Sbjct: 58  LSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117

Query: 276 GNHF----VGEIPQSLSKC-SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP 330
            N F      E  Q+ S   +S+  L L  N L  K    L  +   I            
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA---------- 167

Query: 331 IPVEFCHLYSLQILDISDNNI--------SGSLPSCFHPLSITQVHLSKNMLHGQLKGGT 382
                    ++  L++  NN+        +  L S   P S+T + LS N+L   LK   
Sbjct: 168 ---------NVNSLNLRGNNLASKNCAELAKFLASI--PASVTSLDLSANLL--GLKSYA 214

Query: 383 FF------NCSSLVTLDLSYNLLNGS----IPDWIDGLSQLSHLILGNNNLEGEVPVQLC 432
                     + +V+L+L  N L+G     +    D L  L  + L  + ++     Q  
Sbjct: 215 ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274

Query: 433 GL-------NQLQLLDLSNNNLH 448
            L        ++ L+D +   +H
Sbjct: 275 ALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 64/400 (16%), Positives = 112/400 (28%), Gaps = 116/400 (29%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVN----LEFLALSNNSLK---GHMFSRNFNLIN--LR 270
           +  LDLS N L       L     N    +  L LS NSL         +    I   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 271 WLQLEGNHF----VGEIPQSLSKC-SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN 325
            L L GN        E+ ++L+    ++  L L  N  S K                   
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA----------- 132

Query: 326 HLEGPIPVEFCHLYSLQILDISDNNI--------SGSLPSCFHPLSITQVHLSKNMLHGQ 377
                         S+  L++  N++           L +   P ++  ++L  N L   
Sbjct: 133 -------FSNLPA-SITSLNLRGNDLGIKSSDELIQILAAI--PANVNSLNLRGNNL--A 180

Query: 378 LKGGTFF------NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL 431
            K             +S+ +LDLS NLL           ++L+++     N         
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGL------KSYAELAYIFSSIPN--------- 225

Query: 432 CGLNQLQLLDLSNNNLHG--------LIPPCFDNTKLHESYNNSSSP-DEQFKILFSIKG 482
                +  L+L  N LHG        L         ++  Y+   +   EQ K L +   
Sbjct: 226 ----HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF- 280

Query: 483 HQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR----- 537
                                       +  +  +D +  ++       + NL R     
Sbjct: 281 --------------------------PNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

Query: 538 IQTLNLSHNNLT-----GLIPSTFSNLKQIESLDLSYNKL 572
               +L +  L             +   ++     +   L
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 56/328 (17%), Positives = 110/328 (33%), Gaps = 91/328 (27%)

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
            S    +  L L+ N+L       L                            S+  L++
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQ-------AFANTPA------------SVTSLNL 58

Query: 347 SDNNISGS--------LPSCFHPLSITQVHLSKNMLHGQ----LKGGTFFNCSSLVTLDL 394
           S N++           L +   P ++T ++LS N L  +    L         ++  LDL
Sbjct: 59  SGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 395 SYNLL-NGSIPDWIDGL----SQLSHLILGNNNLEGEVPVQLCGL-----NQLQLLDLSN 444
            +N   + S  ++        + ++ L L  N+L  +   +L  +       +  L+L  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 445 NNL---------HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF 495
           NNL           L       T L  S N              + G +           
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANL-------------L-GLKS---------- 212

Query: 496 EFTTKNIAYIFQGKVLSLLSGLDLSCNKL----IGHIPPQVGNLTRIQTLNLSHNNLTGL 551
                 +AYIF      ++S L+L  N L    + ++     +L  +QT+ L ++ +  +
Sbjct: 213 ---YAELAYIFSSIPNHVVS-LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

Query: 552 -------IPSTFSNLKQIESLDLSYNKL 572
                  + + F N+++I  +D +  ++
Sbjct: 269 SKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 57/353 (16%), Positives = 104/353 (29%), Gaps = 89/353 (25%)

Query: 140 LLENNTKLRQLSLVN--------DSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
                  +  L L            L   F    ++   +  L++S N+       E+  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFA---NTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 192 ILP----RLISFNISMNALDG----SIPSSFGNMNL-LQILDLSNNQLTGEIPEHLAMGC 242
           IL      + S N+S N L       +  +   +   + +LDL  N  + +         
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ-- 131

Query: 243 VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF----VGEIPQSLSKC-SSLEGLY 297
                 A SN               ++  L L GN        E+ Q L+   +++  L 
Sbjct: 132 ------AFSNLPA------------SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173

Query: 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGS--- 354
           L  N+L+ K      N   L   +                  S+  LD+S N +      
Sbjct: 174 LRGNNLASK------NCAELAKFLASIPA-------------SVTSLDLSANLLGLKSYA 214

Query: 355 -----LPSCFHPLSITQVHLSKNMLHG---QLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406
                  S   P  +  ++L  N LHG   +       +   L T+ L Y+++     + 
Sbjct: 215 ELAYIFSSI--PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272

Query: 407 IDGLSQ-------LSHLILGNNNLEGEVPVQLCGL-----NQLQLLDLSNNNL 447
              L         +  +      +     + +  L      +  +  L N  L
Sbjct: 273 CKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 53/362 (14%), Positives = 95/362 (26%), Gaps = 71/362 (19%)

Query: 14  LANMTSLRILDVSSNQLTGS----ISSSPLFYLTSIEELSLSNNHFH----IPISLEPLF 65
            +    +  LD+S N L       +  +      S+  L+LS N         +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 66  NHSRLKIFYADNNPINAKITK--SHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLE 123
             + +       N ++ K +     TL    F +  L L  +               D  
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN---------------DFS 122

Query: 124 DVHFSRIQMNGEFPNWLLENNTKLRQLSLVN--------DSLAGPFRLPIHSHRHLRLLD 175
               S                  +  L+L          D L            ++  L+
Sbjct: 123 SKSSSEF------KQAFSNLPASITSLNLRGNDLGIKSSDELIQILA---AIPANVNSLN 173

Query: 176 VSNNNFQGHIPVEIGDILP----RLISFNISMNALDGSIPSSFG-----NMNLLQILDLS 226
           +  NN       E+   L      + S ++S N L     +          N +  L+L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 227 NNQLTGEIPEHLAMG---CVNLEFLALSNNSLKG-------HMFSRNFNLINLRWLQLEG 276
            N L G   E+L +      +L+ + L  + +K         + +   N+  +  +   G
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 277 NHFVGEIPQSLSK-----CSSLEGLYLNNNSLS-----GKIPRWLGNLTWLIHIIMPKNH 326
                     +S          +   L N  L            L     L   I     
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 327 LE 328
           L 
Sbjct: 354 LL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 54/289 (18%), Positives = 92/289 (31%), Gaps = 76/289 (26%)

Query: 340 SLQILDISDNNISGS--------LPSCFHPLSITQVHLSKNMLHGQLKGGTFF------N 385
            +  LD+S NN+             +   P S+T ++LS N L    K            
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANT--PASVTSLNLSGNSL--GFKNSDELVQILAAI 78

Query: 386 CSSLVTLDLSYNLL-NGSIPDWIDGL----SQLSHLILGNNNLEGEVPVQLCGL-----N 435
            +++ +L+LS N L   S  + +  L      ++ L LG N+   +   +          
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 436 QLQLLDLSNNNLH---------GLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH 486
            +  L+L  N+L           L     +   L+   NN            + K     
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-----------LASKN---- 183

Query: 487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV------GNLTRIQT 540
                          +A        S+ S LDLS N  +G                 + +
Sbjct: 184 ------------CAELAKFLASIPASVTS-LDLSANL-LGLKSYAELAYIFSSIPNHVVS 229

Query: 541 LNLSHNNLTG----LIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKE 585
           LNL  N L G     +     +LK ++++ L Y+ +      Q   L  
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 342 QILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
           QIL + DN I+   P  F  L  + +++L  N L   L  G F + + L  LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 401 GSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
             +P  + D L  L  L +  N L  E+P  +  L  L  L L  N L  +    FD   
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 204 NALDGSIPSSFGNMNLLQILDLSNNQLT---GEIPEHLAMGCVNLEFLALSNN---SLKG 257
           N +    P  F ++  L+ L L +NQL      + + L      L  L L  N    L  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTVLPS 105

Query: 258 HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWL 317
            +F R   L++L+ L +  N    E+P+ + + + L  L L+ N L          L+ L
Sbjct: 106 AVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 318 IHI 320
            H 
Sbjct: 162 THA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPS-CFHPL-SITQVHLSKNMLHGQLKGGT 382
           N +    P  F  L +L+ L +  N +  +LP   F  L  +T + L  N L   L    
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107

Query: 383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442
           F     L  L +  N L   +P  I+ L+ L+HL L  N L+         L+ L    L
Sbjct: 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

Query: 443 SNN 445
             N
Sbjct: 167 FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK----GHMFSRNFNLINLRWLQLEG 276
           QIL L +NQ+T ++   +    +NL+ L L +N L     G +F     L  L  L L  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97

Query: 277 NHFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
           N         L      +   L+ L++  N L+ ++PR +  LT L H+ + +N L+   
Sbjct: 98  NQL-----TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151

Query: 332 PVEFCHLYSLQILDISDN 349
              F  L SL    +  N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 42/183 (22%), Positives = 51/183 (27%), Gaps = 62/183 (33%)

Query: 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL---EGEVPVQLCGLNQLQLLDLSNNNLH 448
           L L  N +    P   D L  L  L LG+N L      V      L QL +LDL  N L 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---LTQLTVLDLGTNQLT 101

Query: 449 GLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQ 507
            L    FD    L                                               
Sbjct: 102 VLPSAVFDRLVHL----------------------------------------------- 114

Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
            K L +       CNKL   +P  +  LT +  L L  N L  +    F  L  +    L
Sbjct: 115 -KELFM------CCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

Query: 568 SYN 570
             N
Sbjct: 167 FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 506 FQGKVLSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
           F    L  L  L L  N+L G +P  V  +LT++  L+L  N LT L  + F  L  ++ 
Sbjct: 60  FDS--LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116

Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNL 596
           L +  NKL  ++P  +  L  L   ++  N L
Sbjct: 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           L L  N++    P    +L  ++ L L  N L  L    F +L Q+  LDL  N+L   +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 577 PH----QLVELKEL 586
           P     +LV LKEL
Sbjct: 104 PSAVFDRLVHLKEL 117

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 212 SSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLR 270
           + + N    + LDL   ++   I E+L       + +  S+N ++       F  L  L+
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 271 WLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304
            L +  N               L  L L NNSL 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 498 TTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFS 557
           T + I    Q         LDL   K I  I      L +   ++ S N +  L    F 
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFP 61

Query: 558 NLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
            L+++++L ++ N++          L +L    +  N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 508 GKVLSLLSGLDLSCNKL--IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESL 565
           G  L     +D S N++  +   P     L R++TL +++N +  +       L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 566 DLSYNKLNGKIPHQLVELKELAVF 589
            L+ N L      +L +L  LA  
Sbjct: 94  ILTNNSLV-----ELGDLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFN 200
             N  + R+L L    +     L   +      +D S+N  +    ++   +L RL +  
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 201 ISMNALDGSIPSSFGNMNLLQILDLSNNQLT--GEIPEHLAMGCVNLEFLALSNN 253
           ++ N +          +  L  L L+NN L   G++ + LA    +L +L +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
            +DNE+R  L      +  L+ L V++N++   I       L  + EL L+NN       
Sbjct: 49  FSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 61  LEPLFNHSRLKIFYADNNPI 80
           L+PL +   L       NP+
Sbjct: 106 LDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 343 ILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS 402
           ++ ++   I        + +   ++ L    +   ++            +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKIP-VIENLGA-TLDQFDAIDFSDNEIR-K 56

Query: 403 IPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
           +  +   L +L  L++ NN +          L  L  L L+NN+L  L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 60/162 (37%)

Query: 265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK 324
           N +  R L L G   +  I    +     + +  ++N +                     
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-------------------- 55

Query: 325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFF 384
             L+G     F  L  L+ L +++N I                         ++  G   
Sbjct: 56  -KLDG-----FPLLRRLKTLLVNNNRIC------------------------RIGEGLDQ 85

Query: 385 NCSSLVTLDLSYNLLNGSIPDWID-----GLSQLSHLILGNN 421
               L  L L+ N     + +  D      L  L++L +  N
Sbjct: 86  ALPDLTELILTNNS----LVELGDLDPLASLKSLTYLCILRN 123

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 66/463 (14%), Positives = 145/463 (31%), Gaps = 66/463 (14%)

Query: 139 WLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLIS 198
           W        R++ + N     P  + I     +R +++              D       
Sbjct: 37  WYEIERWCRRKVFIGNCYAVSPATV-IRRFPKVRSVELKGKPH-------FADFNLVPDG 88

Query: 199 FNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL--K 256
           +   +     ++ SS+     L+ + L    +T +  E +A    N + L LS+      
Sbjct: 89  WGGYVYPWIEAMSSSYTW---LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145

Query: 257 GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLS----KCSSLEGLYLNNNSLSGKIPRWLG 312
             + +      NL+ L L  +         LS      +SL  L ++   L+ ++     
Sbjct: 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEV----- 198

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS----DNNISGSLPSCFHPLSITQVH 368
           + + L  +            V  C   +L+ L ++       ++  L        +    
Sbjct: 199 SFSALERL------------VTRCP--NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 369 LSKNMLHGQLKG--GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE 426
            +  +      G       C  L  L   ++ +   +P      S+L+ L L    ++  
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 427 VPVQL-CGLNQLQLLDL----SNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKI----L 477
             V+L C   +LQ L +     +  L  L   C D  +L    +     +    +    L
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 478 FSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG---- 533
            S+      +E  +    + T   +  I   +    ++   L   +        +     
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 534 -------NLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
                  +   ++ L+LS      +     +  K++E L +++
Sbjct: 423 GFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 49/365 (13%), Positives = 97/365 (26%), Gaps = 41/365 (11%)

Query: 96  QLASLSLSSSYGDGVT---FPKFLYYQHDLEDVHFS--RIQMNGEFPNWLLENNTKLRQL 150
            L  L L  S  D V+      F      L  ++ S    +++      L+     L+ L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 151 SL---VNDSLAGPFRLPIHSHRHLRLLDVSN--NNFQGHIPVEIGDILPRLISFNISMNA 205
            L   V                 L     +                    L   +   +A
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 206 LDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFN 265
           +   +P+ +   + L  L+LS   +       L   C  L+ L + +      +      
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 266 LINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTW--LIHIIMP 323
             +LR L++  +      P        L  + +    L   +  +   +T   LI I   
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALITIA-- 393

Query: 324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTF 383
                        +  ++    +              PL I    + +            
Sbjct: 394 ------------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE------------ 429

Query: 384 FNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL-CGLNQLQLLDL 442
            +C  L  L LS  L +           ++  L +            +  G + L+ L++
Sbjct: 430 -HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

Query: 443 SNNNL 447
            +   
Sbjct: 489 RDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 68/507 (13%), Positives = 140/507 (27%), Gaps = 96/507 (18%)

Query: 96  QLASLSLSSSYGDGVTFP---KFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSL 152
             A  +L      G  +P           LE++   R+ +  +    + ++    + L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 153 VNDSLAGP--FRLPIHSHRHLRLLDVSNNNFQ---GHIPVEIGDILPRLISFNISMNAL- 206
            +              + R+L+ LD+  ++     GH      D    L+S NIS  A  
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 207 --DGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF 264
               ++         L+ L L+      ++   L      LE L     + +      + 
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 265 ------NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLI 318
                     LR L    +     +P   S CS L  L L+  ++             L+
Sbjct: 257 LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---------LV 307

Query: 319 HIIMPKNHLEGPIPVEFCHLYSLQILD----ISDNNISGSLPSCFHPLSITQVHLSKNML 374
            ++              C    LQ L     I D  +     +C     + ++ +     
Sbjct: 308 KLL--------------CQCPKLQRLWVLDYIEDAGLEVLASTC---KDLRELRVF-PSE 349

Query: 375 HGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL-CG 433
              ++         LV++                G  +L  ++     +     + +   
Sbjct: 350 PFVMEPNVALTEQGLVSV--------------SMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 434 LNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQE 493
              +    L             +              D  F  +           K ++ 
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPL------------DIGFGAI-------VEHCKDLRR 436

Query: 494 F---FEFTTKNIAYIFQGKVLSLLSGLDLSCNKL----IGHIPPQVGNLTRIQTLNLSH- 545
                  T K   YI  G     +  L ++        + H+   +     ++ L +   
Sbjct: 437 LSLSGLLTDKVFEYI--GTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEIRDC 491

Query: 546 NNLTGLIPSTFSNLKQIESLDLSYNKL 572
                 + +  S L+ + SL +S   +
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 60/375 (16%), Positives = 114/375 (30%), Gaps = 68/375 (18%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYL----TSIEELSLSNNHFHI-PISLEPLFNHS 68
            A   +L+ LD+  + +   +S   L +     TS+  L++S     +   +LE L    
Sbjct: 152 AATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 69  RLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFS 128
                                       L SL L+ +          L     LE++   
Sbjct: 211 P--------------------------NLKSLKLNRAVPLE-KLATLLQRAPQLEELGTG 243

Query: 129 RIQMNGEFPNW-----LLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQG 183
                     +      L    +LR LS   D++             L  L++S    Q 
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 184 HIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLS---------NNQLTGEI 234
           +  V++    P+L    +     D  +         L+ L +          N  LT + 
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 235 PEHLAMGCVNLEFL-----ALSNNSLKGHMFSRNFNL--INLRWLQLEGNHFVGE----- 282
              ++MGC  LE +      ++N +L   +     N+    L  ++ +   ++       
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 283 -IPQSLSKCSSLEGLYLN----NNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCH 337
                +  C  L  L L+    +      I  +   +  L  +    +   G +      
Sbjct: 423 GFGAIVEHCKDLRRLSLSGLLTDKVFE-YIGTYAKKMEML-SVAFAGDSDLG-MHHVLSG 479

Query: 338 LYSLQILDISDNNIS 352
             SL+ L+I D    
Sbjct: 480 CDSLRKLEIRDCPFG 494

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILG 419
           PL  T++ L+ N L      G F     LV L+L  N L   I     +G S +  L LG
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 420 NNNLEGEVPVQLC-GLNQLQLLDLSNNNLHGLIPPCFDN 457
            N ++ E+  ++  GL+QL+ L+L +N +  ++P  F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG---HMFSRNFNLINLRWLQLEGN 277
             L L++N+L     + L     +L  L L  N L G   + F       +++ LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 278 HFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLG---NLTWLIHIIMPKN 325
                  + +S         L+ L L +N +S  +    G   +L  L  + +  N
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 335 FCHLYSLQILDISDNNISGSLPS-CFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTL 392
           F  L  L  L++  N ++  +    F   S I ++ L +N +  ++    F     L TL
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107

Query: 393 DLSYNLLNGSIPDWI-DGLSQLSHLILGNN 421
           +L  N ++  +     + L+ L+ L L +N
Sbjct: 108 NLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
           L  L  L+L  N+L G I P      + IQ L L  N +  +    F  L Q+++L+L  
Sbjct: 53  LPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111

Query: 570 NKLNGKIPH 578
           N+++  +  
Sbjct: 112 NQISC-VMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
           L L+ N+L       + G L  +  L L  N LTG+ P+ F     I+ L L  NK+  +
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 576 IPH----QLVELKEL 586
           I +     L +LK L
Sbjct: 93  ISNKMFLGLHQLKTL 107

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 174 LDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSS-FGNMNLLQILDLSNNQLTG 232
           L +++N         +   LP L+   +  N L   I  + F   + +Q L L  N++  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 233 EIPEHLAMGCVNLEFLALSNNSLKGHM---FSRNFNLINLRWLQLEGNHF 279
           EI   + +G   L+ L L +N +   M   F    +L +L  L L  N F
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLASNPF 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK---GHMFSRNFN 265
            +P    N   L ++DLSNN+++  +          L  L LS N L+      F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 266 LINLRWLQLEGNHFVGEIPQ-SLSKCSSLEGLYLNNN 301
           L +LR L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           L L  N+    +P ++ N   +  ++LS+N ++ L   +FSN+ Q+ +L LSYN+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 577 PH----QLVELKELAVFSVAYNNLSGEIPE 602
           P      L  L+ L   S+  N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLL---SLHGNDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILG 419
           P  +T+++L  N     L      N   L  +DLS N ++ ++ +     ++QL  LIL 
Sbjct: 30  PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86

Query: 420 NNNLEGEVPVQLC-GLNQLQLLDLSNNNLHGLIPPCFDNTK 459
            N L   +P +   GL  L+LL L  N++  +    F++  
Sbjct: 87  YNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 331 IPVEFCHLYSLQILDISDNNISGSLPS-CFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSS 388
           +P E  +   L ++D+S+N IS +L +  F  ++ +  + LS N L   +   TF    S
Sbjct: 46  VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKS 103

Query: 389 LVTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNN 421
           L  L L  N ++  +P+   + LS LSHL +G N
Sbjct: 104 LRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 24/111 (21%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEGN 277
             L L  NQ T  +P+ L+    +L  + LSNN   +L    FS   N+  L  L L  N
Sbjct: 34  TELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFS---NMTQLLTLILSYN 88

Query: 278 HFVGEIPQSL-----SKCSSLEGLYLNNNSLSGKIPRWLG---NLTWLIHI 320
                  + +         SL  L L+ N +S  +P   G   +L+ L H+
Sbjct: 89  RL-----RCIPPRTFDGLKSLRLLSLHGNDIS-VVPE--GAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
           L L+GN F   +P+ LS    L  + L+NN +S    +   N+T L+ +I+  N L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 332 PVE-FCHLYSLQILDISDNNISGSLP-SCFHPL-SITQVHLSKN 372
           P   F  L SL++L +  N+IS  +P   F+ L +++ + +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 37/203 (18%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             S +   +   + +  S+   +   + L  L L +N +    P  L  L +L+ L ++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94

Query: 445 NNLHGLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIA 503
           N L  L        ++L    N     D       S+                       
Sbjct: 95  NRLKNLNGIPSACLSRLFLDNNELRDTD-------SLIH--------------------- 126

Query: 504 YIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE 563
                  L  L  L +  NK +  I   +G L++++ L+L  N +T       + LK++ 
Sbjct: 127 -------LKNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVN 175

Query: 564 SLDLSYNKLNGKIPHQLVELKEL 586
            +DL+  K   +      EL   
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 34/176 (19%), Positives = 69/176 (39%), Gaps = 14/176 (7%)

Query: 287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI 346
               ++     L   S++  +      L+ + +     ++++    ++     +L+ L +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELHL 70

Query: 347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW 406
           S N IS  L        + ++ +++N    +LK       + L  L L  N L     D 
Sbjct: 71  SHNQIS-DLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNEL--RDTDS 123

Query: 407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE 462
           +  L  L  L + NN L+  V   L  L++L++LDL  N +           K++ 
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN-TGGLTRLKKVNW 176

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
                ++   P     L   +   + K  +   +  +   L  +Q  +  ++NI  SL  
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAG 58

Query: 358 CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLS--QLSH 415
                ++ ++HLS N +   L      + + L  L ++ N L       ++G+    LS 
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKN-----LNGIPSACLSR 110

Query: 416 LILGNNNLEGEVPVQLCGLNQLQLLDLSNNNL 447
           L L NN L       L  L  L++L + NN L
Sbjct: 111 LFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 34/180 (18%), Positives = 72/180 (40%), Gaps = 15/180 (8%)

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
           L   +  N+   ++  +   S   ++ +Q  +  N+ +   +   +     NL+ L LS+
Sbjct: 18  LANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQ-FFTNLKELHLSH 72

Query: 253 NSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 312
           N +     S   +L  L  L +  N  +  +  +    + L  L+L+NN L       L 
Sbjct: 73  NQIS--DLSPLKDLTKLEELSVNRNR-LKNL--NGIPSACLSRLFLDNNELRDTDS--LI 125

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN 372
           +L  L  + +  N L+  + +    L  L++LD+  N I+ +         +  + L+  
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 50/216 (23%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             ++ V  +L    +   +      LS + +    N+N++      +     L+ L LS+
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 445 NNLHGLIPPCFDNTKLHE---SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKN 501
           N +   + P  D TKL E   + N                        +++      +  
Sbjct: 73  NQISD-LSPLKDLTKLEELSVNRN------------------------RLKNLNGIPSAC 107

Query: 502 IAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQ 561
                       LS L L  N+ +      + +L  ++ L++ +N L  +       L +
Sbjct: 108 ------------LSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSK 151

Query: 562 IESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
           +E LDL  N++       L  LK++    +      
Sbjct: 152 LEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           L ++ +L IL + +N+L    S   L +L+ +E L L  N      +   L    ++   
Sbjct: 124 LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWI 177

Query: 74  YADNNPI 80
                  
Sbjct: 178 DLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 31/230 (13%), Positives = 78/230 (33%), Gaps = 57/230 (24%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
              + +    ++    +T          L+ ++  +  N++     SL  +   + LK  
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 74  YADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
           +  +N I+  ++    LT    +L  LS++ +                L++++       
Sbjct: 69  HLSHNQIS-DLSPLKDLT----KLEELSVNRNR---------------LKNLNGI----- 103

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI- 192
                     +  L +L L N+ L       +   ++L +L + NN         +  I 
Sbjct: 104 ---------PSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNK--------LKSIV 144

Query: 193 ----LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHL 238
               L +L   ++  N +  +       +  +  +DL+  +   E  ++ 
Sbjct: 145 MLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 47/275 (17%), Positives = 81/275 (29%), Gaps = 59/275 (21%)

Query: 37  SPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ 96
            P   L +  + +L          L      S ++ F  DN+ I   +      T     
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT----N 64

Query: 97  LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDS 156
           L  L LS                + + D+               L++ TKL +LS+  + 
Sbjct: 65  LKELHLS---------------HNQISDLSP-------------LKDLTKLEELSVNRNR 96

Query: 157 LAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI-----LPRLISFNISMNALDGSIP 211
           L     L       L  L + NN         + D      L  L   +I  N L  SI 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNE--------LRDTDSLIHLKNLEILSIRNNKLK-SI- 143

Query: 212 SSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW 271
              G ++ L++LDL  N++T             + ++ L+              L     
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK 306
           ++     ++   P  +S   S     +        
Sbjct: 201 VKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 47/216 (21%)

Query: 141 LENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI----LPRL 196
           ++  T L++L L ++ ++     P+     L  L V+ N         + ++       L
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNR--------LKNLNGIPSACL 108

Query: 197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK 256
               +  N L      S  ++  L+IL + NN+L             ++  L        
Sbjct: 109 SRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK------------SIVMLG------- 147

Query: 257 GHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTW 316
                    L  L  L L GN  +      L++   +  + L       +  ++   L  
Sbjct: 148 --------FLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197

Query: 317 LIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352
              +  P      P  +   +  S     +      
Sbjct: 198 TNTVKDPDGRWISPYYIS--NGGSYVDGCVLWELPV 231

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 10/243 (4%)

Query: 66  NHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDV 125
             +  +  +   +     +    T       + +     S+ D      F  ++  ++ +
Sbjct: 41  RLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHM 98

Query: 126 HFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSN-NNFQGH 184
             S   +     + +L   +KL+ LSL    L+ P    +  + +L  L++S  + F   
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 185 IPVEIGDILPRLISFNIS--MNALDGSIPSSFG-NMNLLQILDLS--NNQLTGEIPEHLA 239
               +     RL   N+S   +  +  +  +       +  L+LS     L       L 
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

Query: 240 MGCVNLEFLALSN-NSLKGHMFSRNFNLINLRWLQLEGNHFVGEI-PQSLSKCSSLEGLY 297
             C NL  L LS+   LK   F   F L  L+ L L   + +       L +  +L+ L 
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278

Query: 298 LNN 300
           +  
Sbjct: 279 VFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 48/239 (20%)

Query: 211 PSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFN-LINL 269
           P   G +    ++     +   + P         ++ + LSN+ ++        +    L
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120

Query: 270 RWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG 329
           + L LEG      I  +L+K S+L  L L+  S              L  +         
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-------GFSEFA-LQTL--------- 163

Query: 330 PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSL 389
              +  C    L  L++S          CF     T+ H+   + H            ++
Sbjct: 164 ---LSSCS--RLDELNLS---------WCFD---FTEKHVQVAVAH---------VSETI 197

Query: 390 VTLDLSY---NLLNGSIPDWIDGLSQLSHLIL-GNNNLEGEVPVQLCGLNQLQLLDLSN 444
             L+LS    NL    +   +     L HL L  +  L+ +   +   LN LQ L LS 
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 500 KNIAYIFQGKVLSLLSGLDLSCNKL--IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFS 557
                         L  L      L  I ++P     L +++ L LS N ++G +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAE 85

Query: 558 NLKQIESLDLSYNKLNG-KIPHQLVELKELAVFSVAYN 594
               +  L+LS NK+        L +L+ L    +   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNH 278
           ++ L L N++      E L      LEFL+  N  L       N   L  L+ L+L  N 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNR 75

Query: 279 FVGEIPQSLSKCSSLEGLYLNNNSLS 304
             G +     KC +L  L L+ N + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 500 KNIAYIFQGKVLSLLSGLDLSCNKL-IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSN 558
           + I    + +  S +  L L  ++   G +         ++ L+  +  LT +  +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK 62

Query: 559 LKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
           L +++ L+LS N+++G +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 28/138 (20%)

Query: 262 RNFNLINLRWLQLEGNHF-VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
           RN    +++ L L+ +    G++     +   LE L   N  L+                
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------------- 55

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLK 379
                 +          L  L+ L++SDN +SG L        ++T ++LS N +     
Sbjct: 56  -----SIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

Query: 380 GGTFFNCSSLVTLDLSYN 397
                   +L +LDL   
Sbjct: 106 IEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           L  +  L+ L++S N+++            ++  L+LS N      ++EPL     LK  
Sbjct: 60  LPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 74  YADNNPI 80
              N  +
Sbjct: 119 DLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLS 226
               L  L   N        +     L +L    +S N + G +         L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 227 NNQLTG-EIPEHLAMGCVNLEFLALSNN 253
            N++      E L     NL+ L L N 
Sbjct: 97  GNKIKDLSTIEPLK-KLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 360 HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG 419
            P  + ++ L  +  +     G       L  L      L  SI + +  L++L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
           +N + G + V       L  L+LS N +  L
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 27/110 (24%)

Query: 337 HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY 396
               L+ L   +  ++          SI  +                   + L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLP----------------KLNKLKKLELSD 73

Query: 397 NLLNGSIPDWIDGLSQLSHLILGNNNLEG-EVPVQLCGLNQLQLLDLSNN 445
           N ++G +    +    L+HL L  N ++       L  L  L+ LDL N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 74/496 (14%), Positives = 136/496 (27%), Gaps = 162/496 (32%)

Query: 71  KIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRI 130
           KIF+     +N K   S        Q     +  ++         +  +         R+
Sbjct: 183 KIFW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 131 QMNGEFPNWLL-----ENNTKLRQLSL------------VNDSLAGPFRLPIHSHRHLR- 172
             +  + N LL     +N       +L            V D L+      I    H   
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 173 ---------LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGN------M 217
                    LL   +   Q  +P E+    PR +S  I+ +  DG   +++ N       
Sbjct: 298 LTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSI-IAESIRDG--LATWDNWKHVNCD 353

Query: 218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFN----LINLRWLQ 273
            L  I++ S N L       +        F  LS       +F  + +    L++L W  
Sbjct: 354 KLTTIIESSLNVLEPAEYRKM--------FDRLS-------VFPPSAHIPTILLSLIWFD 398

Query: 274 LEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPV 333
           +  +  V  +   L K S +E              +             PK         
Sbjct: 399 VIKS-DVMVVVNKLHKYSLVE--------------KQ------------PKEST------ 425

Query: 334 EFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLD 393
               + S+  L++                +   +H                   S+V   
Sbjct: 426 --ISIPSIY-LEL-----------KVKLENEYALH------------------RSIVD-- 451

Query: 394 LSYNLL-----NGSIPDWIDG--LSQLS-HLILGNNNLEGEVPVQLCGLNQLQLLDLSNN 445
             YN+      +  IP ++D    S +  HL    +     +         +  LD    
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL------FRMV-FLDFR-- 501

Query: 446 NLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHV-------EKKIQEFFEFT 498
                    F   K+       ++       L  +K ++ ++       E+ +    +F 
Sbjct: 502 ---------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 499 TKNIAYIFQGKVLSLL 514
            K    +   K   LL
Sbjct: 553 PKIEENLICSKYTDLL 568

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 19/126 (15%)

Query: 204 NALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMF 260
           N+L       F  +  L  L L  N+L   +P  +     +L +L LS N   SL   +F
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96

Query: 261 SRNFNLINLRWLQLEGNHFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPR-WLGNL 314
            +   L  L+ L L  N       QSL      K + L+ L L  N L   +P      L
Sbjct: 97  DK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRL 147

Query: 315 TWLIHI 320
           T L +I
Sbjct: 148 TSLQYI 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 30/153 (19%)

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
           L LE N           + +SL  LYL  N L   +P  +                    
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV-------------------- 71

Query: 332 PVEFCHLYSLQILDISDNNISGSLPS-CFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSL 389
              F  L SL  L++S N +  SLP+  F  L+ + ++ L+ N L   L  G F   + L
Sbjct: 72  ---FNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQL 126

Query: 390 VTLDLSYNLLNGSIPDWI-DGLSQLSHLILGNN 421
             L L  N L  S+PD + D L+ L ++ L +N
Sbjct: 127 KDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGN-LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY 569
           L+ L+ L L  NKL   +P  V N LT +  LNLS N L  L    F  L Q++ L L+ 
Sbjct: 51  LTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109

Query: 570 NKLNGKIPH----QLVELKEL 586
           N+L   +P     +L +LK+L
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDL 129

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           LDL  N L          LT +  L L  N L  L    F+ L  +  L+LS N+L   +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 577 PH----QLVELKEL 586
           P+    +L +LKEL
Sbjct: 92  PNGVFDKLTQLKEL 105

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 10/128 (7%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI-DGLSQLSHLILG 419
           P   T + L  N L   L  G F   +SL  L L  N L  S+P+ + + L+ L++L L 
Sbjct: 27  PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 420 NNNLEGEVPVQLC-GLNQLQLLDLSNNNLHGLIPPCFDN-TKLHESY--NN--SSSPDEQ 473
            N L+  +P  +   L QL+ L L+ N L  L    FD  T+L +     N   S PD  
Sbjct: 85  TNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143

Query: 474 FKILFSIK 481
           F  L S++
Sbjct: 144 FDRLTSLQ 151

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 37/138 (26%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNF-NLINLRWLQLEGNH 278
           ++ L L N +      E L    VNLEFL+L N  L       N   L  L+ L+L  N 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENR 82

Query: 279 FVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTWLIHIIMPKN---HLEGPIPVE 334
             G +     K  +L  L L+ N L        L  L  L  + +      +L       
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 335 FCHLYSLQILDISDNNIS 352
           F  L  L  LD  D    
Sbjct: 143 FKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           LD   +   G I         ++ L+L +  L  +  S    L +++ L+LS N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL 87

Query: 577 PHQLVELKELAVFSVAYNNLS 597
                +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 8/134 (5%)

Query: 143 NNTKLRQLSLVNDSLAGPFRLPIHSH-RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNI 201
               +R+L L N          + +   +L  L + N        V     LP+L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 202 SMNALDGSIPSSFGNMNLLQILDLSNNQLT--GEIPEHLAMGCVNLEFLALSNNSLKGHM 259
           S N + G +      +  L  L+LS N+L     + E L      L+ L L N  +    
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNCEVTNLN 136

Query: 260 FSRNFNLINLRWLQ 273
             R      L  L 
Sbjct: 137 DYRESVFKLLPQLT 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 514 LSGLDLSCNKL--IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
           L  L L    L  + ++P     L +++ L LS N + G +      L  +  L+LS NK
Sbjct: 51  LEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 572 LNGKIPHQLVELKEL 586
           L       L  LK+L
Sbjct: 107 LKD--ISTLEPLKKL 119

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 28/138 (20%)

Query: 262 RNFNLINLRWLQLEGNHF-VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHI 320
           RN     +R L L+      G+I    ++  +LE L L N  L                 
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------------- 62

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPL-SITQVHLSKNMLHGQLK 379
                 +          L  L+ L++S+N I G L      L ++T ++LS N L     
Sbjct: 63  -----SVSN-----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 380 GGTFFNCSSLVTLDLSYN 397
                    L +LDL   
Sbjct: 113 LEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 361 PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN 420
           P ++ ++ L     +     G      +L  L L    L  S+ + +  L +L  L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 421 NNLEGEVPVQLCGLNQLQLLDLSNNNLHGL 450
           N + G + +    L  L  L+LS N L  +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIF 73
           L  +  L+ L++S N++           L ++  L+LS N      +LEPL     LK  
Sbjct: 67  LPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 74  YADNNPI 80
              N  +
Sbjct: 126 DLFNCEV 132

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 32/170 (18%)

Query: 147 LRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD-ILPRL----ISFNI 201
           +  L+ +         +      +L+ L++ +      +  +I    LP L    +   +
Sbjct: 171 MPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 202 SMNALDGSIPS-----SFGNMNLLQILDLSNNQLTGEIPEHLAMGCV--NLEFLALSNNS 254
                DG +       S      L+ L + + +    + E      +   LE + +S   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304
           L                     +     +   + K   L+ + +  N LS
Sbjct: 291 L--------------------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 8e-05
 Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 21/206 (10%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             +    L             WI+    LS ++     L     +++ G N L +     
Sbjct: 137 KFAHFEGLFWGDIDFEEQEISWIE-QVDLSPVLDAMPLLNN---LKIKGTNNLSIGKKPR 192

Query: 445 NNLHGL-IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIA 503
            NL  L I        + E    S  P+ +  +L+      G         F+       
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG---------FDGDMNVFR 243

Query: 504 YIFQGKVLSLLSGLDLSCNKLIGHIPPQVGN---LTRIQTLNLSHNNLTG----LIPSTF 556
            +F       L  L +   +    +         L +++T+++S   LT     L+    
Sbjct: 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303

Query: 557 SNLKQIESLDLSYNKLNGKIPHQLVE 582
             +K ++ +++ YN L+ ++  +L +
Sbjct: 304 DKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 144 NTKLRQLSLVN--DSLAGPFRLPIHSHRHLRLLDVS--NNNFQGHIPVEI------GDIL 193
              L+ L +++     +    +      +L  L +     ++     + +       D  
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 194 PRLISFNISMNALDGSIPSSFGN---MNLLQILDLSNNQLTGEIPEHLAMGC---VNLEF 247
           P L    I        +   F     +  L+ +D+S   LT E    L        +L+F
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 248 LALSNNSL 255
           + +  N L
Sbjct: 312 INMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 163 LPIHSHRHLRLLDVSNNNFQGHIPVEIG--DILPRLISFNISMNALDGS----IPSSFGN 216
                  +L+ L + +   Q  +       DILP+L + +IS   L       +      
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 217 MNLLQILDLSNNQLTGEIPEHLA 239
           +  L+ +++  N L+ E+ + L 
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQ 328

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 54/165 (32%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           ++  +LS   + + L L+ N++  KI                 + L          + +L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-----------------SSLS--------GMENL 72

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           +IL +  N I            I                       +L  L +SYN +  
Sbjct: 73  RILSLGRNLIK----------KIE---------------NLDAVADTLEELWISYNQIA- 106

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQ-LCGLNQLQLLDLSNN 445
           S+   I+ L  L  L + NN +     +  L  L++L+ L L+ N
Sbjct: 107 SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 43/136 (31%)

Query: 223 LDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS------LKGHMFSRNFNLINLRWLQLEG 276
           L      +  ++   L+      + LALS N+      L          + NLR L L  
Sbjct: 30  LHGMIPPIE-KMDATLS-TLKACKHLALSTNNIEKISSLS--------GMENLRILSLGR 79

Query: 277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFC 336
           N    +I    +   +LE L+++ N ++                      L G       
Sbjct: 80  NLIK-KIENLDAVADTLEELWISYNQIA---------------------SLSG-----IE 112

Query: 337 HLYSLQILDISDNNIS 352
            L +L++L +S+N I+
Sbjct: 113 KLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           L     L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +SYN
Sbjct: 47  LKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYN 103

Query: 571 KLNGKIPHQLVELKELAVFSVAYNNLS 597
           ++   +   + +L  L V  ++ N ++
Sbjct: 104 QIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 24/149 (16%)

Query: 141 LENNTKLRQLSLVNDSLAGPFR------LPIHSHRHLRLLDVSNNNFQGHIPVEIGDI-- 192
            E    +         L G           + + +  + L +S NN        I  I  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN--------IEKISS 65

Query: 193 ---LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA 249
              +  L   ++  N +   I +     + L+ L +S NQ+   +   +    VNL  L 
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIE-KLVNLRVLY 121

Query: 250 LSNNSLKG-HMFSRNFNLINLRWLQLEGN 277
           +SNN +       +   L  L  L L GN
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
           L+L  NK +  +P  V   LT++  L+LS N +  L    F  L ++  L L  NKL   
Sbjct: 33  LELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-S 90

Query: 576 IPH----QLVELKEL 586
           +P+    +L +LKEL
Sbjct: 91  LPNGVFDKLTQLKEL 105

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 335 FCHLYSLQILDISDNNISGSLPS-CFHPL-SITQVHLSKNMLHGQLKGGTFFNCSSLVTL 392
           F  L  L  L +S N I  SLP   F  L  +T ++L +N L   L  G F   + L  L
Sbjct: 48  FDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105

Query: 393 DLSYNLLNGSIPDWI-DGLSQLSHLILGNN 421
            L  N L  S+PD I D L+ L  + L  N
Sbjct: 106 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 221 QILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN---SLKGHMFSRNFNLINLRWLQLEGN 277
             L+L +N+L   +P  +      L  L+LS N   SL   +F +   L  L  L L  N
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK---LTKLTILYLHEN 86

Query: 278 HFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPR-WLGNLTWLIHI 320
                  QSL      K + L+ L L+ N L   +P      LT L  I
Sbjct: 87  KL-----QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKI 129

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 5/28 (17%)

Query: 60 SLEPLFNHSRLKIFYADNNP---INAKI 84
          +L+ L   + LK++  D+ P   I A +
Sbjct: 21 ALKKL--QASLKLYADDSAPALAIKATM 46

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 41/172 (23%)

Query: 140 LLENNTKLRQLSLVN-----DSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILP 194
           +  N+  L +++L N               + ++ +++   +        +   + ++L 
Sbjct: 31  IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML- 89

Query: 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254
                N +                 L+ L++ +N ++G     L       E L  SN S
Sbjct: 90  ---KVNNT-----------------LKSLNVESNFISGSGILALV------EALQ-SNTS 122

Query: 255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGK 306
           L           +        GN+   EI   L K ++L     +      +
Sbjct: 123 LIELRIDNQSQPL--------GNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
           L L+ N+ I  + P V  +L  +Q L  + N LT +    F  L Q+  LDL+ N L   
Sbjct: 38  LWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS- 95

Query: 576 IPH 578
           IP 
Sbjct: 96  IPR 98

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 517 LDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
           L L  N+ I  + P V   LT++  L+L +N LT L    F  L Q+  L L+ N+L   
Sbjct: 35  LYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS- 92

Query: 576 IPH 578
           IP 
Sbjct: 93  IPR 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	693
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.98

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.1e-71  Score=629.25  Aligned_cols=621  Identities=30%  Similarity=0.444  Sum_probs=500.1

Q ss_pred             CCCCCCccCcch--hccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCccc---ccCCCCCcEEEc
Q 037315            1 MADNELRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEP---LFNHSRLKIFYA   75 (693)
Q Consensus         1 Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~~l~~L~~L~l   75 (693)
                      |++|.++|.+|.  .|+++++|++|||++|.+++.+|...+.++++|++|++++|++++..+ ..   +.++++|++|++
T Consensus       107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~l~~L~~L~L  185 (768)
T 3rgz_A          107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAI  185 (768)
T ss_dssp             CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH-HHHHHTTCCTTCCEEEC
T ss_pred             CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC-hhhhhhccCCCCCEEEC
Confidence            455666665555  666666666666666666555554223556666666666666654433 22   556666666666


Q ss_pred             cCCccccccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCC
Q 037315           76 DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVND  155 (693)
Q Consensus        76 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  155 (693)
                      ++|.+.+..+.     ....+|++|++ +.+.+.+.+|. ++.+++|++|++++|.+.+.+|..+ +++++|++|++++|
T Consensus       186 s~n~l~~~~~~-----~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n  257 (768)
T 3rgz_A          186 SGNKISGDVDV-----SRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSN  257 (768)
T ss_dssp             CSSEEESCCBC-----TTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSS
T ss_pred             CCCcccccCCc-----ccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCC
Confidence            66666543322     23448999999 77888877776 8899999999999999988877775 88999999999999


Q ss_pred             cccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccc
Q 037315          156 SLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIP  235 (693)
Q Consensus       156 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  235 (693)
                      .+.+..+..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+.+.+|
T Consensus       258 ~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip  335 (768)
T 3rgz_A          258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP  335 (768)
T ss_dssp             CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence            998766554  889999999999999989999888767999999999999999999999999999999999999998999


Q ss_pred             hHHhhCCCCCcEEEccccccccccCccCCCCC-CCCeEeccCccccccCCcCCcC--CCCCCEEeccCCcccccCCcccc
Q 037315          236 EHLAMGCVNLEFLALSNNSLKGHMFSRNFNLI-NLRWLQLEGNHFVGEIPQSLSK--CSSLEGLYLNNNSLSGKIPRWLG  312 (693)
Q Consensus       236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~l~  312 (693)
                      ...+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+..+..  +++|++|++++|.+++..|..+.
T Consensus       336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~  415 (768)
T 3rgz_A          336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS  415 (768)
T ss_dssp             HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG
T ss_pred             HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh
Confidence            88677899999999999999988888888887 9999999999999888887776  88999999999999999999999


Q ss_pred             CCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCcccEEEccCcccccccCcccccCCCCCcE
Q 037315          313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSITQVHLSKNMLHGQLKGGTFFNCSSLVT  391 (693)
Q Consensus       313 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  391 (693)
                      .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .++|+.|++++|++.+.+|. .+..+++|++
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~  494 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNW  494 (768)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCE
T ss_pred             cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCE
Confidence            999999999999999999999999999999999999999988887665 78999999999999888887 8899999999


Q ss_pred             EeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCC--
Q 037315          392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSS--  469 (693)
Q Consensus       392 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~--  469 (693)
                      |++++|.+++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+....-.........  
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999998887655321111000000  


Q ss_pred             --------Cchhhh---HhhhhcccCCccccccc--ceeeeecccceee--eccccccCcceEECCCCcccccCchhhcc
Q 037315          470 --------PDEQFK---ILFSIKGHQGHVEKKIQ--EFFEFTTKNIAYI--FQGKVLSLLSGLDLSCNKLIGHIPPQVGN  534 (693)
Q Consensus       470 --------~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  534 (693)
                              ......   ....+.+..........  .............  .....+++|+.||+++|++++.+|..++.
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence                    000000   00000000000000000  0000000000000  01123678999999999999999999999


Q ss_pred             CCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCccc
Q 037315          535 LTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENS  614 (693)
Q Consensus       535 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~  614 (693)
                      +++|+.|+|++|++++.+|..++++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+. .++.++...+
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~  733 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAK  733 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGG
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999986 7899999999


Q ss_pred             ccCccCCCCCCCCCCCCCCC
Q 037315          615 YEGNTFLCGLPLPICRSPTT  634 (693)
Q Consensus       615 ~~~n~~~c~~~~~~c~~~~~  634 (693)
                      +.|||.+|+.|+..|.....
T Consensus       734 ~~gN~~Lcg~~l~~C~~~~~  753 (768)
T 3rgz_A          734 FLNNPGLCGYPLPRCDPSNA  753 (768)
T ss_dssp             GCSCTEEESTTSCCCCSCC-
T ss_pred             hcCCchhcCCCCcCCCCCcc
Confidence            99999999999888875443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.2e-65  Score=577.46  Aligned_cols=613  Identities=27%  Similarity=0.364  Sum_probs=382.0

Q ss_pred             CCCCCCccC---cchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCc-ccccCCCCCcEEEcc
Q 037315            1 MADNELRGS---LPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISL-EPLFNHSRLKIFYAD   76 (693)
Q Consensus         1 Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~   76 (693)
                      |+++.++|.   +|++|.++++|+.++++.+.+. .+|. .++.+++|++|||++|.+.+.+|. ..+.++++|++|+++
T Consensus        57 L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls  134 (768)
T 3rgz_A           57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS  134 (768)
T ss_dssp             CTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC
T ss_pred             CCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc
Confidence            345566665   5555555555555555555554 4444 455555555555555555544441 145555555555555


Q ss_pred             CCccccccccccCCCCCCccccEEecCCCCCCCCcCchh---hc----------------------CCCCCCEEEccCcc
Q 037315           77 NNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKF---LY----------------------YQHDLEDVHFSRIQ  131 (693)
Q Consensus        77 ~n~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---l~----------------------~~~~L~~L~l~~~~  131 (693)
                      +|.+.+..+..+.  ....+|++|++ +.+.+.+..+..   +.                      .+++|++|++++|.
T Consensus       135 ~n~l~~~~~~~~~--~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~  211 (768)
T 3rgz_A          135 SNTLDFPGKVSGG--LKLNSLEVLDL-SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN  211 (768)
T ss_dssp             SSEEECCSSCCSC--CCCTTCSEEEC-CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSC
T ss_pred             CCccCCcCCHHHh--ccCCCCCEEEC-CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCc
Confidence            5555443333211  11224555555 444444433333   33                      44555555555555


Q ss_pred             ccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCC
Q 037315          132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIP  211 (693)
Q Consensus       132 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  211 (693)
                      +.+..|.  ++++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|..   .+++|++|++++|.+++.+|
T Consensus       212 l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip  286 (768)
T 3rgz_A          212 FSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIP  286 (768)
T ss_dssp             CCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCC
T ss_pred             CCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccC
Confidence            5544443  245555555555555555544455555555555555555555444443   24555566666665555555


Q ss_pred             ccCCCC-CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCcc-CCCCCCCCeEeccCccccccCCcCCcC
Q 037315          212 SSFGNM-NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSR-NFNLINLRWLQLEGNHFVGEIPQSLSK  289 (693)
Q Consensus       212 ~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~  289 (693)
                      ..+... ++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..|..+..
T Consensus       287 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  365 (768)
T 3rgz_A          287 DFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN  365 (768)
T ss_dssp             CCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred             HHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence            555543 6666666666666555554443 4666666666666665444433 556666666666666666556665655


Q ss_pred             CC-CCCEEeccCCcccccCCccccC--CCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCccc
Q 037315          290 CS-SLEGLYLNNNSLSGKIPRWLGN--LTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSIT  365 (693)
Q Consensus       290 l~-~L~~L~L~~n~i~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~  365 (693)
                      ++ +|++|++++|.+++..+..+..  +++|++|++++|.+.+..|..+..+++|++|++++|++.+..|..+. .++|+
T Consensus       366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  445 (768)
T 3rgz_A          366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR  445 (768)
T ss_dssp             HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCC
Confidence            55 6666666666666555555554  56677777777777766777777777777777777777766666554 66777


Q ss_pred             EEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 037315          366 QVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN  445 (693)
Q Consensus       366 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  445 (693)
                      .|++++|.+.+.++. .+..+++|++|++++|.+++..|.++.++++|++|++++|++++.+|..+..+++|++|++++|
T Consensus       446 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  524 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN  524 (768)
T ss_dssp             EEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             EEECCCCcccCcCCH-HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence            777777777766665 6677777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCcccCCCCcccCc-cccccCCCCCCchhhhHhhh-hcccCCcccccccceeeeeccccee---------ee------cc
Q 037315          446 NLHGLIPPCFDNTK-LHESYNNSSSPDEQFKILFS-IKGHQGHVEKKIQEFFEFTTKNIAY---------IF------QG  508 (693)
Q Consensus       446 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------~~  508 (693)
                      ++++.+|..+..++ +.......+...+..+.... .........................         .+      ..
T Consensus       525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (768)
T 3rgz_A          525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL  604 (768)
T ss_dssp             CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred             cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence            77777777766544 22222222222211111110 0000000000000111111100000         00      00


Q ss_pred             ccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCE
Q 037315          509 KVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAV  588 (693)
Q Consensus       509 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  588 (693)
                      ..++.++.++++.|.+.+.+|..+..+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+..+++|++
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence            12344566777888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315          589 FSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       589 L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      ||+++|+++|.+|..+..++.+..+++++|+.....|
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            9999999999999999999999999999998765433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.5e-61  Score=544.65  Aligned_cols=566  Identities=21%  Similarity=0.231  Sum_probs=450.5

Q ss_pred             CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315            1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI   80 (693)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (693)
                      |++|+|++..+.+|+++++|++|||++|.++ .+++..++++++|++|++++|+++ .+|...+.++++|++|++++|.+
T Consensus        32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             CCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCcc
Confidence            4677777777777777888888888887777 443336777778888888877776 34545677777888888887777


Q ss_pred             ccccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhh-hhcCCCCCEEEccCCcccc
Q 037315           81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWL-LENNTKLRQLSLVNDSLAG  159 (693)
Q Consensus        81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  159 (693)
                      .+..+..+.   ...+|++|++ +.+.+.+..+..+..+++|++|++++|.+.+..+..+ ...+++|++|++++|.+++
T Consensus       110 ~~~~~~~~~---~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          110 QKIKNNPFV---KQKNLITLDL-SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             CCCCSCTTT---TCTTCCEEEC-CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             CccChhHcc---ccCCCCEEEC-CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            654433322   2347778887 6666666666667777778888887777766554433 1245777888888777777


Q ss_pred             cCCCCCCCCCCCCEEEccCCcCcccCChhhhh--cCCCCcEEEccCCcccccCCccCCCCCC--CCEEEcccCccccccc
Q 037315          160 PFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD--ILPRLISFNISMNALDGSIPSSFGNMNL--LQILDLSNNQLTGEIP  235 (693)
Q Consensus       160 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~  235 (693)
                      ..+..+..+++|+.|+++++.+.+.....+..  ..++|++|++++|.+.+..|..|..++.  |++|++++|.+. .++
T Consensus       186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~  264 (680)
T 1ziw_A          186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVG  264 (680)
T ss_dssp             BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EEC
T ss_pred             cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccC
Confidence            66666777777777777777665322222211  1368999999999999888888888765  999999999998 444


Q ss_pred             hHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccc-----cCC----cCCcCCCCCCEEeccCCccccc
Q 037315          236 EHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVG-----EIP----QSLSKCSSLEGLYLNNNSLSGK  306 (693)
Q Consensus       236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~L~~n~i~~~  306 (693)
                      ...+..+++|++|++++|.+.+..+..+..+++|++|++++|...+     .+|    ..+..+++|++|++++|.+.+.
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence            4445579999999999999999888899999999999999875442     122    2678899999999999999988


Q ss_pred             CCccccCCCCCcEEEccCCccccC--ccccccC--CCCCCEEECcCCcCCCCCCCCCC-CCcccEEEccCcccccccCcc
Q 037315          307 IPRWLGNLTWLIHIIMPKNHLEGP--IPVEFCH--LYSLQILDISDNNISGSLPSCFH-PLSITQVHLSKNMLHGQLKGG  381 (693)
Q Consensus       307 ~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~  381 (693)
                      .+..+.++++|++|++++|.+...  ....|..  .++|+.|++++|++.+..+..+. .++|+.|++++|.+.+.++..
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            888899999999999999875422  2223333  35899999999999988777665 788999999999998888877


Q ss_pred             cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccc--ccCCcccCCCCCCCEEEccCCcCcccCCCCcccCc
Q 037315          382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLE--GEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK  459 (693)
Q Consensus       382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  459 (693)
                      .+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.  +..|..+.++++|++|++++|+++++.+..|..  
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--  502 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG--  502 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--
T ss_pred             cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--
Confidence            8999999999999999998888889999999999999999986  467888999999999999999999888877766  


Q ss_pred             cccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCc--------hh
Q 037315          460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP--------PQ  531 (693)
Q Consensus       460 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~  531 (693)
                                                                         +++|++|++++|++++..+        ..
T Consensus       503 ---------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  531 (680)
T 1ziw_A          503 ---------------------------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYF  531 (680)
T ss_dssp             ---------------------------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred             ---------------------------------------------------ccccCEEeCCCCCccccchhhccCCcchh
Confidence                                                               5589999999999986532        23


Q ss_pred             hccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcc-ccCcC
Q 037315          532 VGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKA-QFATF  610 (693)
Q Consensus       532 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~l  610 (693)
                      |.++++|++|+|++|+++.+++..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+. .++++
T Consensus       532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence            78899999999999999988778899999999999999999988888889999999999999999988877666 78899


Q ss_pred             CcccccCccCCCCCCC
Q 037315          611 NENSYEGNTFLCGLPL  626 (693)
Q Consensus       611 ~~~~~~~n~~~c~~~~  626 (693)
                      ..+++++|||.|+|+.
T Consensus       612 ~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          612 TELDMRFNPFDCTCES  627 (680)
T ss_dssp             SEEECTTCCCCBCCCC
T ss_pred             CEEEccCCCcccCCcc
Confidence            9999999999999985

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-57  Score=523.03  Aligned_cols=570  Identities=21%  Similarity=0.184  Sum_probs=343.2

Q ss_pred             CCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315            2 ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN   81 (693)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (693)
                      ++++++.+ |.   -.++|++|||++|.|+ .++...|..+++|++|+|++|...+.++..++.++++|++|++++|.+.
T Consensus        12 s~~~L~~v-P~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           12 RFCNLTQV-PQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             SCCCSSCC-CS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             cCCCCCCC-CC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            45677765 43   4588999999999998 5544489999999999999997766776578999999999999999987


Q ss_pred             cccccccCCCCCCccccEEecCCCCCCCCcCchh--hcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc
Q 037315           82 AKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKF--LYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG  159 (693)
Q Consensus        82 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  159 (693)
                      +..+..+.   ...+|++|+| +.+.+.+..+..  +..+++|++|++++|.+.+..+...++++++|++|++++|.+++
T Consensus        87 ~~~p~~~~---~l~~L~~L~L-s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           87 FLHPDAFQ---GLFHLFELRL-YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             EECTTSSC---SCSSCCCEEC-TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             ccCHhHcc---CCcccCEeeC-cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            76555433   2337777777 666666654443  66777777777777777665543334677777777777777776


Q ss_pred             cCCCCCCCC--CCCCEEEccCCcCcccCChhhhhcCC------CCcEEEccCCcccccCCccCCCC---CCCCEEEcccC
Q 037315          160 PFRLPIHSH--RHLRLLDVSNNNFQGHIPVEIGDILP------RLISFNISMNALDGSIPSSFGNM---NLLQILDLSNN  228 (693)
Q Consensus       160 ~~~~~l~~~--~~L~~L~l~~n~~~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n  228 (693)
                      ..+..+..+  ++|+.|++++|.+.+..|..+.. ++      .|++|++++|.+.+..+..+...   .+++.+.++.+
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            666666555  67777777777776655554333 22      37777777777665555554432   45666666532


Q ss_pred             cccc--------ccchHHhhC--CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315          229 QLTG--------EIPEHLAMG--CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL  298 (693)
Q Consensus       229 ~l~~--------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  298 (693)
                      ....        ......+.+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence            2110        111222222  256777777777777766666777777777777777777666666777777777777


Q ss_pred             cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315          299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL  378 (693)
Q Consensus       299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  378 (693)
                      ++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+...    .++|+.+++++|++. .+
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l  396 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TL  396 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CC
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-cc
Confidence            7777766666677777777777777777766666667777777777777776653211    455666666666654 22


Q ss_pred             CcccccCCCCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315          379 KGGTFFNCSSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEVPV-QLCGLNQLQLLDLSNNNLHGLIPPCFD  456 (693)
Q Consensus       379 ~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~  456 (693)
                      +.    ...+++.|++++|.+.+... ..+.++++|++|++++|++++..+. .+..+++|+.|++++|.+....+....
T Consensus       397 ~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~  472 (844)
T 3j0a_A          397 PK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC  472 (844)
T ss_dssp             CC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred             cc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence            22    13456666666666654321 2234566666666666666543322 234455666666666655432221110


Q ss_pred             cCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCC
Q 037315          457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT  536 (693)
Q Consensus       457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  536 (693)
                      ...                                              +  ..+++|++|+|++|++++..|..|..++
T Consensus       473 ~~~----------------------------------------------~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  504 (844)
T 3j0a_A          473 WDV----------------------------------------------F--EGLSHLQVLYLNHNYLNSLPPGVFSHLT  504 (844)
T ss_dssp             SSC----------------------------------------------S--SCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred             hhh----------------------------------------------h--cCcccccEEECCCCcccccChhHccchh
Confidence            000                                              0  0133555555555555555555555555


Q ss_pred             CCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCccccc
Q 037315          537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYE  616 (693)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~  616 (693)
                      +|++|+|++|+++++++..+.  ++|+.|+|++|++++..|..+   ++|+.+++++|++.|.++..     .+..+...
T Consensus       505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~-----~f~~~~~~  574 (844)
T 3j0a_A          505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS-----TFINWLNH  574 (844)
T ss_dssp             SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC-----SHHHHHHH
T ss_pred             hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH-----HHHHHHHh
Confidence            555555555555555444443  455555555555555555443   24555555555555544321     11111112


Q ss_pred             CccCCCCCCCC-CCCCCCCCCccccccccCCCC
Q 037315          617 GNTFLCGLPLP-ICRSPTTMSEASIENERDDNL  648 (693)
Q Consensus       617 ~n~~~c~~~~~-~c~~~~~~~~~~~~~~~~~~~  648 (693)
                      .+...|+.+.. .|..|....+..+.+.....|
T Consensus       575 ~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C  607 (844)
T 3j0a_A          575 TNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC  607 (844)
T ss_dssp             TTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred             cCcccccccccCccCCchhhCCCccccCccccC
Confidence            23333333222 688887777666655544433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.5e-56  Score=503.87  Aligned_cols=589  Identities=22%  Similarity=0.211  Sum_probs=461.2

Q ss_pred             CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315            1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI   80 (693)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (693)
                      |++|.+++..|++|+++++|++|+|++|.++ .+|...|+.+++|++|++++|++.+ ++...+.++++|++|++++|.+
T Consensus        56 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l  133 (680)
T 1ziw_A           56 VGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL  133 (680)
T ss_dssp             CCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCC
T ss_pred             CCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcc
Confidence            5789999999999999999999999999998 8887679999999999999999974 4446899999999999999999


Q ss_pred             ccccccccCCCCCCccccEEecCCCCCCCCcCchhhc--CCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccc
Q 037315           81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLY--YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLA  158 (693)
Q Consensus        81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  158 (693)
                      .+..+..+   ....+|++|++ +.+.+.+..+..+.  .+++|++|++++|.+.+..+..+ +.+++|+.|++.++.+.
T Consensus       134 ~~~~~~~~---~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~  208 (680)
T 1ziw_A          134 SSTKLGTQ---VQLENLQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLG  208 (680)
T ss_dssp             SCCCCCSS---SCCTTCCEEEC-CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCH
T ss_pred             cccCchhh---cccccCCEEEc-cCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccccccC
Confidence            87655543   23459999999 77777776666554  56899999999999987766654 88999999999998876


Q ss_pred             ccCCCCC---CCCCCCCEEEccCCcCcccCChhhhhcC--CCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccc
Q 037315          159 GPFRLPI---HSHRHLRLLDVSNNNFQGHIPVEIGDIL--PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE  233 (693)
Q Consensus       159 ~~~~~~l---~~~~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  233 (693)
                      ......+   ...++|++|++++|.+++..|..+.. +  ++|++|++++|.+++..+..|+.+++|++|++++|.+.+.
T Consensus       209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (680)
T 1ziw_A          209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL  287 (680)
T ss_dssp             HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred             hhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence            4322111   13478999999999998777766654 4  4599999999999988889999999999999999999854


Q ss_pred             cchHHhhCCCCCcEEEcccccccc---------ccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315          234 IPEHLAMGCVNLEFLALSNNSLKG---------HMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS  304 (693)
Q Consensus       234 ~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  304 (693)
                      .|. .+.++++|++|++++|...+         +....+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus       288 ~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  366 (680)
T 1ziw_A          288 FSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS  366 (680)
T ss_dssp             CTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred             Chh-hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence            444 44579999999999875442         22336788999999999999999888888999999999999999754


Q ss_pred             c--cCCccccCC--CCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCC-CCC-CCCcccEEEccCccccccc
Q 037315          305 G--KIPRWLGNL--TWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP-SCF-HPLSITQVHLSKNMLHGQL  378 (693)
Q Consensus       305 ~--~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~~~~~~  378 (693)
                      .  .....+..+  ++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+.++ ..+ ..++|++|++++|++.+..
T Consensus       367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  446 (680)
T 1ziw_A          367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT  446 (680)
T ss_dssp             CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred             hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence            2  222334333  589999999999998889999999999999999999987665 333 4789999999999986555


Q ss_pred             CcccccCCCCCcEEeCcCcccC--CCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315          379 KGGTFFNCSSLVTLDLSYNLLN--GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFD  456 (693)
Q Consensus       379 ~~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  456 (693)
                      +. .|..+++|+.|++++|.+.  +..|..+.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.
T Consensus       447 ~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  525 (680)
T 1ziw_A          447 RN-SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP  525 (680)
T ss_dssp             TT-TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred             hh-hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence            54 8899999999999999886  46788999999999999999999988888899999999999999999876544332


Q ss_pred             cCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCC
Q 037315          457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT  536 (693)
Q Consensus       457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  536 (693)
                      ....                                             .....+++|++|++++|+++.+.+..|.+++
T Consensus       526 ~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          526 GGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            1100                                             0001267899999999999976667799999


Q ss_pred             CCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccc-cCCCCCEEecCCCcCcccCC--CCccccCcCCcc
Q 037315          537 RIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV-ELKELAVFSVAYNNLSGEIP--EWKAQFATFNEN  613 (693)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~l~~N~l~~~~p--~~~~~~~~l~~~  613 (693)
                      +|++|++++|+++++++..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++  .|+..|..-...
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~  640 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT  640 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC--
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCc
Confidence            999999999999999889999999999999999999988888787 78999999999999999887  455444322211


Q ss_pred             cccCccCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 037315          614 SYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLI  649 (693)
Q Consensus       614 ~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~  649 (693)
                      .+.+.     .....|..|....+..+.++..+.+.
T Consensus       641 ~~~~~-----~~~~~C~~p~~~~g~~l~~~~~~~~~  671 (680)
T 1ziw_A          641 NIPEL-----SSHYLCNTPPHYHGFPVRLFDTSSCK  671 (680)
T ss_dssp             ------------------------------------
T ss_pred             ccccc-----cCCcEECCchHHCCCcccccChhhcC
Confidence            11110     01125777777777666666665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1e-54  Score=484.17  Aligned_cols=516  Identities=22%  Similarity=0.228  Sum_probs=354.6

Q ss_pred             CCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcccc
Q 037315           19 SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLA   98 (693)
Q Consensus        19 ~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~   98 (693)
                      ++++|||++|.++ .+++..|+++++|++|++++|++.+..| .+|.++++|++|++++|.+                  
T Consensus        34 ~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l------------------   93 (606)
T 3t6q_A           34 STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPL------------------   93 (606)
T ss_dssp             TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC------------------
T ss_pred             cCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcc------------------
Confidence            4555555555555 3332245555555555555555543323 3455555555555555544                  


Q ss_pred             EEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccC
Q 037315           99 SLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSN  178 (693)
Q Consensus        99 ~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  178 (693)
                                .+..|..++.+++|++|++++|.+.+..+.. ++++++|++|++++|.+++.....+..+++|++|++++
T Consensus        94 ----------~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  162 (606)
T 3t6q_A           94 ----------IFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN  162 (606)
T ss_dssp             ----------SEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred             ----------cccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence                      3344555666777778888777776543333 36778888888888887764434444578888888888


Q ss_pred             CcCcccCChhhhhcCCCCc--EEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccc
Q 037315          179 NNFQGHIPVEIGDILPRLI--SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLK  256 (693)
Q Consensus       179 n~~~~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  256 (693)
                      |.+++..+..+.. +++|+  +|++++|.+.+..|..+.. ..|+.|++++|.   .++..+ .++.+++...+....+.
T Consensus       163 n~l~~~~~~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~  236 (606)
T 3t6q_A          163 NAIHYLSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFE  236 (606)
T ss_dssp             SCCCEECHHHHHT-TTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCT
T ss_pred             CcccccChhhhhh-hcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHh-hhccccchhheechhhc
Confidence            8887444444444 77777  7888888887766665544 578888888775   222222 23444433333222211


Q ss_pred             -----cccCccCCCCC--CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcccc
Q 037315          257 -----GHMFSRNFNLI--NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG  329 (693)
Q Consensus       257 -----~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  329 (693)
                           ...+..+..+.  +|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+
T Consensus       237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~  315 (606)
T 3t6q_A          237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN  315 (606)
T ss_dssp             TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB
T ss_pred             cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc
Confidence                 11122222222  5777777777777666666777777777777777776 566667777777777777777776


Q ss_pred             CccccccCCCCCCEEECcCCcCCCCCCCC-C-CCCcccEEEccCcccccccC-cccccCCCCCcEEeCcCcccCCCcchh
Q 037315          330 PIPVEFCHLYSLQILDISDNNISGSLPSC-F-HPLSITQVHLSKNMLHGQLK-GGTFFNCSSLVTLDLSYNLLNGSIPDW  406 (693)
Q Consensus       330 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~-~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~  406 (693)
                      ..|..+..+++|++|++++|.+.+..+.. + .+++|++|++++|.+.+... ...+..+++|++|++++|.+.+..+..
T Consensus       316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  395 (606)
T 3t6q_A          316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA  395 (606)
T ss_dssp             GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred             CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence            66667777777777777777776544432 2 36677777777777755431 226778888888888888888777788


Q ss_pred             hhCCCCCCEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCC
Q 037315          407 IDGLSQLSHLILGNNNLEGEVPV-QLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQG  485 (693)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  485 (693)
                      +..+++|++|++++|++++..+. .+..+++|++|++++|.+.+..|..+..                            
T Consensus       396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------  447 (606)
T 3t6q_A          396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG----------------------------  447 (606)
T ss_dssp             TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT----------------------------
T ss_pred             hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC----------------------------
Confidence            88888888888888888766554 3788888888888888888777776655                            


Q ss_pred             cccccccceeeeecccceeeeccccccCcceEECCCCccccc---CchhhccCCCCCeeeCCCccCCccCcccccCCCCC
Q 037315          486 HVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH---IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI  562 (693)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  562 (693)
                                               +++|++|++++|++.+.   .+..+..+++|++|++++|+++++.|..|.++++|
T Consensus       448 -------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          448 -------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             -------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             -------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence                                     45788888888888762   23567888888888888888888888888888888


Q ss_pred             CEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315          563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       563 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      ++|+|++|++++..|..+..+++| +|++++|++++..|..+..++++..+++++||+.|+|+.
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            888888888888888888888888 888888888888787777788888888888888888864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.4e-54  Score=478.30  Aligned_cols=531  Identities=19%  Similarity=0.168  Sum_probs=300.3

Q ss_pred             CEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccccEE
Q 037315           21 RILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASL  100 (693)
Q Consensus        21 ~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  100 (693)
                      ++++.+++.++ .+|. .+.  ++|++|++++|++++. +...+.++++|++|++++|.+++..+..+.   ...+|++|
T Consensus        14 ~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~---~l~~L~~L   85 (606)
T 3vq2_A           14 ITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWH---GLHHLSNL   85 (606)
T ss_dssp             TEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT---TCTTCCEE
T ss_pred             CceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhh---chhhcCEe
Confidence            34455555554 4444 221  4455555555554422 223444555555555555544443333221   12245555


Q ss_pred             ecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEccCC
Q 037315          101 SLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNN  179 (693)
Q Consensus       101 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n  179 (693)
                      ++ +.+.+.+..|..++.+++|++|++++|.+.+..+.. ++++++|++|++++|.+.+ .++..++.+++|++|++++|
T Consensus        86 ~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           86 IL-TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EC-TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             EC-CCCcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            55 444444444555566666666666666665433333 3566666666666666654 34555666666666666666


Q ss_pred             cCcccCChhhhhcCCC----CcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccc
Q 037315          180 NFQGHIPVEIGDILPR----LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL  255 (693)
Q Consensus       180 ~~~~~~~~~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  255 (693)
                      ++++..+..+.. +++    +++|++++|.+++..+..+... +|+.|++++|.+.+......+..+++|+.+++..+.+
T Consensus       164 ~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~  241 (606)
T 3vq2_A          164 YIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF  241 (606)
T ss_dssp             CCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             cceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence            666444433322 222    3466666666665544444433 6666666666655333333344566666666544332


Q ss_pred             ccc------cCccCCCCC--CCCeEec-cCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCc
Q 037315          256 KGH------MFSRNFNLI--NLRWLQL-EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH  326 (693)
Q Consensus       256 ~~~------~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  326 (693)
                      ...      ....+..+.  .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.
T Consensus       242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~  318 (606)
T 3vq2_A          242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQ  318 (606)
T ss_dssp             TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCC
T ss_pred             ccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEccccc
Confidence            211      011111111  2334444 44445544444 556666666666666664 233 55566666666666666


Q ss_pred             cccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc--CcccccCCCCCcEEeCcCcccCCCcc
Q 037315          327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL--KGGTFFNCSSLVTLDLSYNLLNGSIP  404 (693)
Q Consensus       327 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~  404 (693)
                      + +.+| .+ .+++|+.|++++|+..+.. .....++|+.|++++|.+.+..  +. .+..+++|++|++++|.+.+ .|
T Consensus       319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~  392 (606)
T 3vq2_A          319 L-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MS  392 (606)
T ss_dssp             C-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-EC
T ss_pred             C-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-ch
Confidence            6 3444 33 5666666666666443332 2234556666666666664432  22 55666777777777776663 44


Q ss_pred             hhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315          405 DWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH  483 (693)
Q Consensus       405 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  483 (693)
                      ..+.++++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|..+..                          
T Consensus       393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------  446 (606)
T 3vq2_A          393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------------------------  446 (606)
T ss_dssp             CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------
T ss_pred             hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC--------------------------
Confidence            566667777777777777766555 45666777777777777776666655544                          


Q ss_pred             CCcccccccceeeeecccceeeeccccccCcceEECCCCcccc-cCchhhccCCCCCeeeCCCccCCccCcccccCCCCC
Q 037315          484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG-HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI  562 (693)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  562 (693)
                                                 +++|++|++++|++.+ ..|..++.+++|++|++++|++++..|..|.++++|
T Consensus       447 ---------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          447 ---------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             ---------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ---------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence                                       3467777777777665 356666777777777777777776666677777777


Q ss_pred             CEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccC-cCCcccccCccCCCCCCC
Q 037315          563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFA-TFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       563 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~l~~~~~~~n~~~c~~~~  626 (693)
                      ++|++++|++++..|..+..+++|++|++++|+++ .+|.++..++ ++..+++++||+.|+|+.
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            77777777777666677777777777777777766 4454455554 466677777777777664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.8e-54  Score=478.06  Aligned_cols=513  Identities=20%  Similarity=0.180  Sum_probs=373.8

Q ss_pred             CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315            1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI   80 (693)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (693)
                      |++|.|+++.|.+|+++++|++|||++|+++ .+.+..|+.+++|++|++++|++.+..| ..+.++++|++|++++|.+
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i  117 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGI  117 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCC
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCc
Confidence            6899999999999999999999999999998 5544489999999999999999986555 6899999999999999998


Q ss_pred             ccccccccCCCCCCccccEEecCCCCCCCCc-CchhhcCCCCCCEEEccCccccccCchhhhhcCCCCC--EEEccCCcc
Q 037315           81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVT-FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLR--QLSLVNDSL  157 (693)
Q Consensus        81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~  157 (693)
                      +...+..+.   ...+|++|++ +.+.+.+. .|... .+++|++|++++|.+.+..+..+ +.+++|+  +|++++|.+
T Consensus       118 ~~l~~~~~~---~l~~L~~L~L-~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          118 SSIDFIPLH---NQKTLESLYL-GSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             SCGGGSCCT---TCTTCCEEEC-CSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCC
T ss_pred             ccCCcchhc---cCCcccEEEC-CCCcccccCccccc-CCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCcc
Confidence            764433321   2235666666 44444442 23222 25555666665555554433332 4555555  555555555


Q ss_pred             cccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchH
Q 037315          158 AGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEH  237 (693)
Q Consensus       158 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  237 (693)
                      .+..+..+.. .+|++|++++|..   ++..+.. +.+++...+....+.           .+.        .. .++..
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~-l~~~~l~~l~~~~~~-----------~~~--------~~-~i~~~  246 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKG-LKNSTIQSLWLGTFE-----------DMD--------DE-DISPA  246 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCSC---HHHHHHH-TTTCEEEEEECCCCT-----------TSC--------CC-CCCGG
T ss_pred             CccChhHhhh-ccccccccCCchh---HHHHhhh-ccccchhheechhhc-----------ccc--------cc-ccChh
Confidence            5444333322 3455555555531   1111111 233222222211111           000        01 22222


Q ss_pred             HhhCCC--CCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCC
Q 037315          238 LAMGCV--NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT  315 (693)
Q Consensus       238 ~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~  315 (693)
                      .+.++.  +|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus       247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence            222222  6777788888777777777777788888888888777 5666777778888888888877766677777788


Q ss_pred             CCcEEEccCCccccCccc-cccCCCCCCEEECcCCcCCCCC--CC-CCCCCcccEEEccCcccccccCcccccCCCCCcE
Q 037315          316 WLIHIIMPKNHLEGPIPV-EFCHLYSLQILDISDNNISGSL--PS-CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT  391 (693)
Q Consensus       316 ~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  391 (693)
                      +|++|++++|.+.+..+. .+..+++|++|++++|.+.+..  +. ...+++|+.|++++|.+.+..+. .+..+++|++
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~  404 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLEL  404 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSE
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCe
Confidence            888888888877644433 4777888888888888776553  33 33467788888888887665554 8889999999


Q ss_pred             EeCcCcccCCCcch-hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccC-C--CCcccCccccccCCC
Q 037315          392 LDLSYNLLNGSIPD-WIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI-P--PCFDNTKLHESYNNS  467 (693)
Q Consensus       392 L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~--~~~~~~~l~~~~~~~  467 (693)
                      |++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+.. +  ..+..          
T Consensus       405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----------  474 (606)
T 3t6q_A          405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT----------  474 (606)
T ss_dssp             EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG----------
T ss_pred             EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc----------
Confidence            99999999876554 5889999999999999999888999999999999999999987632 1  22322          


Q ss_pred             CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCcc
Q 037315          468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN  547 (693)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  547 (693)
                                                                 +++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus       475 -------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          475 -------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             -------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence                                                       6689999999999999999999999999999999999


Q ss_pred             CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315          548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE  602 (693)
Q Consensus       548 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  602 (693)
                      +++..|..+.++++| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus       512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999999 999999999999999999999999999999999997763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.8e-52  Score=464.46  Aligned_cols=563  Identities=20%  Similarity=0.196  Sum_probs=441.5

Q ss_pred             CCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315            2 ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN   81 (693)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (693)
                      ++++++.. |..+.  +++++|||++|.++ .++...|.++++|++|++++|++++..| ..+.++++|++|++++|.++
T Consensus        19 ~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           19 MDQKLSKV-PDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             TTSCCSSC-CTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCC
T ss_pred             cCCCcccC-CCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCccc
Confidence            45666644 54443  88999999999998 6665589999999999999999985444 67899999999999999998


Q ss_pred             cccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccc-cCchhhhhcCCCCCEEEccCCccccc
Q 037315           82 AKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNG-EFPNWLLENNTKLRQLSLVNDSLAGP  160 (693)
Q Consensus        82 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~  160 (693)
                      +..+..+.   ...+|++|++ +.+.+.+..+..++.+++|++|++++|.+.+ .+|..+ +++++|++|++++|.+++.
T Consensus        94 ~~~p~~~~---~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           94 SFSPGSFS---GLTSLENLVA-VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCTTSST---TCTTCCEEEC-TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEE
T ss_pred             ccChhhcC---CcccCCEEEc-cCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceec
Confidence            77666543   3348999999 8888877776778999999999999999986 567765 8999999999999999988


Q ss_pred             CCCCCCCCCCCC----EEEccCCcCcccCChhhhhcCCCCcEEEccCCccc-ccCCccCCCCCCCCEEEcccCcccc---
Q 037315          161 FRLPIHSHRHLR----LLDVSNNNFQGHIPVEIGDILPRLISFNISMNALD-GSIPSSFGNMNLLQILDLSNNQLTG---  232 (693)
Q Consensus       161 ~~~~l~~~~~L~----~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~---  232 (693)
                      .+..++.+++|+    +|++++|.++ .++...+.. .+|++|++++|.+. +..|..+.+++.|+.+++..+.+.+   
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            777777766655    8999999998 566666653 48999999999886 4567788899999999886654331   


Q ss_pred             --ccchHHhhCCC--CCcEEEc-cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccC
Q 037315          233 --EIPEHLAMGCV--NLEFLAL-SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKI  307 (693)
Q Consensus       233 --~~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~  307 (693)
                        .++...+.++.  .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~l  322 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQF  322 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSC
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccc
Confidence              12223322222  4666777 56777777766 889999999999999997 455 788899999999999999 467


Q ss_pred             CccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCC--CC-CCCCCcccEEEccCcccccccCccccc
Q 037315          308 PRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSL--PS-CFHPLSITQVHLSKNMLHGQLKGGTFF  384 (693)
Q Consensus       308 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~  384 (693)
                      | .+ .+++|++|++++|...+.  ..+..+++|+.|++++|.+.+..  +. ...+++|+.|++++|.+.+ ++ ..+.
T Consensus       323 p-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~  396 (606)
T 3vq2_A          323 P-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFM  396 (606)
T ss_dssp             C-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCT
T ss_pred             c-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch-hhcc
Confidence            7 44 899999999999965543  35778999999999999987652  33 3347889999999999865 44 3889


Q ss_pred             CCCCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcc-cCCCCcccCcccc
Q 037315          385 NCSSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG-LIPPCFDNTKLHE  462 (693)
Q Consensus       385 ~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~  462 (693)
                      .+++|+.|++++|.+.+..+ ..+..+++|++|++++|++++..|..+.++++|++|++++|++.+ ..|..+..     
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----  471 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-----  471 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-----
Confidence            99999999999999998777 689999999999999999999899999999999999999999987 46776655     


Q ss_pred             ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315          463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN  542 (693)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  542 (693)
                                                                      +++|++|++++|++++..|..+..+++|++|+
T Consensus       472 ------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          472 ------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             ------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence                                                            55899999999999999999999999999999


Q ss_pred             CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCC-CCCEEecCCCcCcccCCC-CccccCcCCcccccCccC
Q 037315          543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK-ELAVFSVAYNNLSGEIPE-WKAQFATFNENSYEGNTF  620 (693)
Q Consensus       543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~p~-~~~~~~~l~~~~~~~n~~  620 (693)
                      +++|++++.+|..|.++++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++. |+.++.       ..++.
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l-------~~~~~  575 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV-------KEQKQ  575 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT-------TTSSS
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHH-------HcCcc
Confidence            9999999999999999999999999999998 5666688887 599999999999997774 111111       11111


Q ss_pred             CC-CCCCCCCCCCCCCCccccccccCCC
Q 037315          621 LC-GLPLPICRSPTTMSEASIENERDDN  647 (693)
Q Consensus       621 ~c-~~~~~~c~~~~~~~~~~~~~~~~~~  647 (693)
                      .. +.....|..|....+..+.+++.+.
T Consensus       576 ~~~~~~~~~C~~p~~~~~~~l~~~~~~~  603 (606)
T 3vq2_A          576 FLVNVEQMTCATPVEMNTSLVLDFNNST  603 (606)
T ss_dssp             SBSSGGGCCCC-----------------
T ss_pred             cccCCccceeCCChHhCCCEeeeccccc
Confidence            11 1112357777777766666555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-52  Score=479.84  Aligned_cols=505  Identities=21%  Similarity=0.206  Sum_probs=422.7

Q ss_pred             CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315            1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI   80 (693)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (693)
                      ||+|.|+++.|.+|.++++|++|||++|...+.+++..|+++++|++|+|++|.+.+..| ..+.++++|++|++++|.+
T Consensus        31 Ls~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           31 LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             EESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTCCC
T ss_pred             CCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCCCC
Confidence            578999999999999999999999999976668865589999999999999999986656 6899999999999999999


Q ss_pred             ccccccccCCCCCCccccEEecCCCCCCCCcC-chhhcCCCCCCEEEccCccccccCchhhhhcC--CCCCEEEccCCcc
Q 037315           81 NAKITKSHTLTTPKFQLASLSLSSSYGDGVTF-PKFLYYQHDLEDVHFSRIQMNGEFPNWLLENN--TKLRQLSLVNDSL  157 (693)
Q Consensus        81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~  157 (693)
                      .+..+.... .....+|++|++ +.+.+.+.. +..++.+++|++|++++|.+.+..+..+ ..+  ++|+.|++++|.+
T Consensus       110 ~~~~~~~~~-~~~L~~L~~L~L-s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          110 SDAVLKDGY-FRNLKALTRLDL-SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             SSCCSTTCC-CSSCSSCCEEEE-ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBS
T ss_pred             CcccccCcc-ccccCCCCEEEC-CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCcc
Confidence            875444211 233459999999 677776654 4678999999999999999988777665 455  8999999999999


Q ss_pred             cccCCCCCCCCCC------CCEEEccCCcCcccCChhhhhcC--CCCcEEEccCC---------cccccCCccCCCC--C
Q 037315          158 AGPFRLPIHSHRH------LRLLDVSNNNFQGHIPVEIGDIL--PRLISFNISMN---------ALDGSIPSSFGNM--N  218 (693)
Q Consensus       158 ~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~L~~n---------~i~~~~~~~~~~l--~  218 (693)
                      .+..+..+..+++      |++|++++|.+++..+..+...+  ++++.+.++.+         .+.+..+..|..+  +
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence            9877776666655      99999999999888887776543  47888888743         2333334455554  7


Q ss_pred             CCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315          219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL  298 (693)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  298 (693)
                      +|+.|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus       267 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          267 SVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             CCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            8999999999998 444455567999999999999999998999999999999999999999888889999999999999


Q ss_pred             cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315          299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL  378 (693)
Q Consensus       299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  378 (693)
                      ++|.+....+..+..+++|++|++++|.+.+.     ..+++|+.|++++|++.. ++..  ..+++.+++++|++.+..
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~--~~~l~~L~ls~N~l~~l~  417 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI--NLTANLIHLSENRLENLD  417 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC--CTTCCEEECCSCCCCSST
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc--ccccceeecccCccccCc
Confidence            99999988888899999999999999998743     348899999999999983 3332  567999999999997654


Q ss_pred             CcccccCCCCCcEEeCcCcccCCCcch-hhhCCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315          379 KGGTFFNCSSLVTLDLSYNLLNGSIPD-WIDGLSQLSHLILGNNNLE-----GEVPVQLCGLNQLQLLDLSNNNLHGLIP  452 (693)
Q Consensus       379 ~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~  452 (693)
                      ....+..+++|+.|++++|.+++..+. .+..+++|++|++++|.++     +..+..|.++++|++|+|++|++++.+|
T Consensus       418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence            333456899999999999999865443 4567899999999999997     3445678899999999999999999998


Q ss_pred             CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315          453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV  532 (693)
Q Consensus       453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  532 (693)
                      ..|..                                                     +++|+.|+|++|++++..+..+
T Consensus       498 ~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~  524 (844)
T 3j0a_A          498 GVFSH-----------------------------------------------------LTALRGLSLNSNRLTVLSHNDL  524 (844)
T ss_dssp             TSSSS-----------------------------------------------------CCSCSEEEEESCCCSSCCCCCC
T ss_pred             hHccc-----------------------------------------------------hhhhheeECCCCCCCccChhhh
Confidence            88866                                                     5589999999999998777776


Q ss_pred             ccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccC
Q 037315          533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI  576 (693)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  576 (693)
                      .  ++|+.|+|++|++++.+|..|.   +|+.|++++|++.+..
T Consensus       525 ~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          525 P--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICEC  563 (844)
T ss_dssp             C--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSS
T ss_pred             h--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccc
Confidence            6  8999999999999999988764   7999999999997643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-47  Score=423.49  Aligned_cols=492  Identities=21%  Similarity=0.241  Sum_probs=322.5

Q ss_pred             CCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccc
Q 037315           18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQL   97 (693)
Q Consensus        18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L   97 (693)
                      +++++|||++|.++ .++...|..+++|++|++++|++++ ++...+.++++|++|++++|.++..              
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~--------------   91 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSL--------------   91 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEE--------------
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCcc--------------
Confidence            45777777777776 4444366777777777777777653 3335566677777777777665432              


Q ss_pred             cEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEc
Q 037315           98 ASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDV  176 (693)
Q Consensus        98 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l  176 (693)
                                    .+..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+.+ .++..++.+++|++|++
T Consensus        92 --------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l  156 (570)
T 2z63_A           92 --------------ALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (570)
T ss_dssp             --------------CTTTTTTCTTCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             --------------CHhhhcCccccccccccccccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence                          2344556677777777777765433222 3677788888888887765 34666777788888888


Q ss_pred             cCCcCcccCChhhhhcCCCC----cEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccc
Q 037315          177 SNNNFQGHIPVEIGDILPRL----ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN  252 (693)
Q Consensus       177 ~~n~~~~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  252 (693)
                      ++|++++..+..+.. +++|    ++|++++|.+.+..+..+... +|+.|++++|............++++++.+.+..
T Consensus       157 ~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  234 (570)
T 2z63_A          157 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  234 (570)
T ss_dssp             TTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred             cCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecc
Confidence            888877444444443 5566    778888888877777766655 6888888877543222223334577777666543


Q ss_pred             cccc------cccCccCCCCC--CCCeEeccCc-cccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEcc
Q 037315          253 NSLK------GHMFSRNFNLI--NLRWLQLEGN-HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMP  323 (693)
Q Consensus       253 n~l~------~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  323 (693)
                      ..+.      ......+..++  .++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|+++
T Consensus       235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~  312 (570)
T 2z63_A          235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELV  312 (570)
T ss_dssp             EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEE
T ss_pred             ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeec
Confidence            3221      11222222222  2455556555 555566667777777777777777776 466666666 77777777


Q ss_pred             CCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccC-cccccCCCCCcEEeCcCcccCCC
Q 037315          324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLK-GGTFFNCSSLVTLDLSYNLLNGS  402 (693)
Q Consensus       324 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~  402 (693)
                      +|.+. ..|.  ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... ...+..+++|++|++++|.+.+.
T Consensus       313 ~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  388 (570)
T 2z63_A          313 NCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM  388 (570)
T ss_dssp             SCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE
T ss_pred             cCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc
Confidence            77776 3333  3567777777777776654443 446667777777776644321 12556677777777777777644


Q ss_pred             cchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhc
Q 037315          403 IPDWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIK  481 (693)
Q Consensus       403 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  481 (693)
                      .+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..                        
T Consensus       389 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------  443 (570)
T 2z63_A          389 SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------  443 (570)
T ss_dssp             EEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------
T ss_pred             ccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------------------------
Confidence            333 7777777777777777775544 45677777777777777777666666544                        


Q ss_pred             ccCCcccccccceeeeecccceeeeccccccCcceEECCCCccc-ccCchhhccCCCCCeeeCCCccCCccCcccccCCC
Q 037315          482 GHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI-GHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLK  560 (693)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  560 (693)
                                                   +++|++|++++|++. +.+|..+..+++|++|++++|++++..|..|.+++
T Consensus       444 -----------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          444 -----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             -----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             -----------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence                                         446777777777776 45667777777777777777777777777777777


Q ss_pred             CCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315          561 QIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE  602 (693)
Q Consensus       561 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  602 (693)
                      +|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            777777777777777666777777777777777777777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=416.47  Aligned_cols=466  Identities=20%  Similarity=0.178  Sum_probs=392.1

Q ss_pred             cccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEE
Q 037315           96 QLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLD  175 (693)
Q Consensus        96 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  175 (693)
                      ++++|++ +++.+.+..+..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++..+..+..+++|++|+
T Consensus        29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            7999999 888888777778899999999999999988655554 48899999999999999988888899999999999


Q ss_pred             ccCCcCcccCChhhhhcCCCCcEEEccCCcccc-cCCccCCCCCCCCEEEcccCccccccchHHhhCCCCC----cEEEc
Q 037315          176 VSNNNFQGHIPVEIGDILPRLISFNISMNALDG-SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNL----EFLAL  250 (693)
Q Consensus       176 l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~l  250 (693)
                      +++|+++ .++......+++|++|++++|.+.+ ..|..|+++++|++|++++|.+. .++...+..+++|    ++|++
T Consensus       107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence            9999998 4554333448899999999999986 36889999999999999999998 4443334457777    89999


Q ss_pred             cccccccccCccCCCCCCCCeEeccCccccc-------------------------------cCCcCCcCCC--CCCEEe
Q 037315          251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVG-------------------------------EIPQSLSKCS--SLEGLY  297 (693)
Q Consensus       251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------~~~~~l~~l~--~L~~L~  297 (693)
                      ++|.+.+..+..+... +|++|++++|....                               .....+..++  .++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            9999999888777665 79999998873221                               1111222222  245566


Q ss_pred             ccCC-cccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccc
Q 037315          298 LNNN-SLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHG  376 (693)
Q Consensus       298 L~~n-~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  376 (693)
                      ++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .++. ...++|+.|++++|.+.+
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccc
Confidence            6666 666777888999999999999999988 567778888 9999999999998 4444 467899999999999876


Q ss_pred             ccCcccccCCCCCcEEeCcCcccCCCc--chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC-C
Q 037315          377 QLKGGTFFNCSSLVTLDLSYNLLNGSI--PDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP-P  453 (693)
Q Consensus       377 ~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~  453 (693)
                      ..+.   ..+++|++|++++|.+++..  +..+.++++|++|++++|.+++..+. +..+++|++|++++|.+.+..+ .
T Consensus       340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            6553   67899999999999998654  67899999999999999999965554 9999999999999999987765 3


Q ss_pred             CcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhc
Q 037315          454 CFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG  533 (693)
Q Consensus       454 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  533 (693)
                      .+..                                                     +++|++|++++|++.+..|..+.
T Consensus       416 ~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          416 VFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             TTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTTT
T ss_pred             hhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhhh
Confidence            4433                                                     56899999999999999999999


Q ss_pred             cCCCCCeeeCCCccCC-ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCc
Q 037315          534 NLTRIQTLNLSHNNLT-GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNE  612 (693)
Q Consensus       534 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~  612 (693)
                      .+++|++|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..++++..
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            9999999999999998 567899999999999999999999999999999999999999999999998888889999999


Q ss_pred             ccccCccCCCCCCCC
Q 037315          613 NSYEGNTFLCGLPLP  627 (693)
Q Consensus       613 ~~~~~n~~~c~~~~~  627 (693)
                      +++++||+.|+|+..
T Consensus       523 L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          523 IWLHTNPWDCSCPRI  537 (570)
T ss_dssp             EECCSSCBCCCTTTT
T ss_pred             EEecCCcccCCCcch
Confidence            999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.6e-47  Score=415.65  Aligned_cols=486  Identities=20%  Similarity=0.194  Sum_probs=350.6

Q ss_pred             CCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcc
Q 037315           17 MTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ   96 (693)
Q Consensus        17 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~   96 (693)
                      ++...+.|.+++.++ .+|. .+.  ++|++|++++|++++..| ..+.++++|++|++++|.+++..            
T Consensus         4 C~~~~~c~~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~------------   66 (549)
T 2z81_A            4 CDASGVCDGRSRSFT-SIPS-GLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIE------------   66 (549)
T ss_dssp             ECTTSEEECTTSCCS-SCCS-CCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEEC------------
T ss_pred             CCCCceEECCCCccc-cccc-cCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccC------------
Confidence            344445678888887 7877 443  688888888888865444 56788888888888887765432            


Q ss_pred             ccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEE
Q 037315           97 LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP-FRLPIHSHRHLRLLD  175 (693)
Q Consensus        97 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~  175 (693)
                                      +..+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+++. .+..++.+++|++|+
T Consensus        67 ----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           67 ----------------GDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             ----------------TTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             ----------------hhhccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence                            233455667777777777777554444 37888888888888888763 456688889999999


Q ss_pred             ccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccc
Q 037315          176 VSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL  255 (693)
Q Consensus       176 l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  255 (693)
                      +++|...+.+|...+..+++|++|++++|.+++..|..+.++++|++|++++|.+. .+|..++..+++|++|++++|++
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence            99998544666544445889999999999999888999999999999999999887 77877777789999999999998


Q ss_pred             cccc---CccCCCCCCCCeEeccCccccccCC----cCCcCCCCCCEEeccCCcccccC------CccccCCCCCcEEEc
Q 037315          256 KGHM---FSRNFNLINLRWLQLEGNHFVGEIP----QSLSKCSSLEGLYLNNNSLSGKI------PRWLGNLTWLIHIIM  322 (693)
Q Consensus       256 ~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~~~------~~~l~~l~~L~~L~l  322 (693)
                      .+..   ......+++|+.|++++|.+.+..+    ..+..+++|+.+++++|.+.+..      ...+..+++++.+++
T Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  288 (549)
T 2z81_A          209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI  288 (549)
T ss_dssp             TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred             ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence            8752   1223457889999999998775433    33456788999999998876531      123456778888888


Q ss_pred             cCCccccC-----ccccccCCCCCCEEECcCCcCCCCCCCCC--CCCcccEEEccCcccccccCc--ccccCCCCCcEEe
Q 037315          323 PKNHLEGP-----IPVEFCHLYSLQILDISDNNISGSLPSCF--HPLSITQVHLSKNMLHGQLKG--GTFFNCSSLVTLD  393 (693)
Q Consensus       323 ~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~  393 (693)
                      .++.+...     .+..+...++|+.|++++|.+. .+|..+  ..++|+.|++++|++.+.++.  ..+..+++|++|+
T Consensus       289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~  367 (549)
T 2z81_A          289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV  367 (549)
T ss_dssp             ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred             cccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence            88766532     1112334567888888888876 344332  367788888888877665432  2356778888888


Q ss_pred             CcCcccCCCcc--hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCc
Q 037315          394 LSYNLLNGSIP--DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPD  471 (693)
Q Consensus       394 L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~  471 (693)
                      +++|.+++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+.....                 
T Consensus       368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-----------------  429 (549)
T 2z81_A          368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI-----------------  429 (549)
T ss_dssp             CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS-----------------
T ss_pred             ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh-----------------
Confidence            88888775432  45777888888888888887 56667777888888888888776432211                 


Q ss_pred             hhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCcc
Q 037315          472 EQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL  551 (693)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  551 (693)
                                                             +++|++|++++|++++..    ..+++|++|+|++|+++.+
T Consensus       430 ---------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i  466 (549)
T 2z81_A          430 ---------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL  466 (549)
T ss_dssp             ---------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC
T ss_pred             ---------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC
Confidence                                                   235778888888877542    4677888888888888754


Q ss_pred             CcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          552 IPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                       |. ...+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|
T Consensus       467 -p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          467 -PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence             33 3567788888888888887777777888888888888888877766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.9e-45  Score=409.30  Aligned_cols=533  Identities=20%  Similarity=0.204  Sum_probs=359.7

Q ss_pred             CCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcccc
Q 037315           19 SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLA   98 (693)
Q Consensus        19 ~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~   98 (693)
                      ++++|||++|+|+ .+++.+|.++++|++|||++|++++ ++..+|.++++|++|++++|+++.                
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~----------------  114 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS----------------  114 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE----------------
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCC----------------
Confidence            5666666666666 5554456666666666666666653 333456666666666666665543                


Q ss_pred             EEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEEcc
Q 037315           99 SLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP-FRLPIHSHRHLRLLDVS  177 (693)
Q Consensus        99 ~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~  177 (693)
                                  ..+..+..+++|++|++++|.+.+. +...++++++|++|++++|.+++. .+..++.+++|++|+++
T Consensus       115 ------------l~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          115 ------------LALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             ------------ECGGGGTTCTTCCEEECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             ------------CCHHHhcCCCCCCEEECCCCcCCCC-ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence                        2234456677777777777777643 333347778888888888877653 34556777788888888


Q ss_pred             CCcCcccCChhhhh---cCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccc
Q 037315          178 NNNFQGHIPVEIGD---ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS  254 (693)
Q Consensus       178 ~n~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  254 (693)
                      +|++++..+..+..   .-.....++++.|.+....+..+ ....++.+++.+|.....++...+.++..++...+..+.
T Consensus       182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  260 (635)
T 4g8a_A          182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  260 (635)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence            88877544444332   11234567788888775554443 334567777777765545555555567777766665432


Q ss_pred             cc------cccCccCCCCCCCCeEeccCccccc---cCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCC
Q 037315          255 LK------GHMFSRNFNLINLRWLQLEGNHFVG---EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKN  325 (693)
Q Consensus       255 l~------~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  325 (693)
                      ..      ......+.....+....+..+....   .....+..+.+++.+++.++.+...  ..+.....++.|++.+|
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~  338 (635)
T 4g8a_A          261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNC  338 (635)
T ss_dssp             CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESC
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccc
Confidence            22      2222333344445555444332221   2233455566777887777776533  23455667788888887


Q ss_pred             ccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc-CcccccCCCCCcEEeCcCcccCCCcc
Q 037315          326 HLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL-KGGTFFNCSSLVTLDLSYNLLNGSIP  404 (693)
Q Consensus       326 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~  404 (693)
                      .+....+   ..++.|+.+++..|.... .......++|+.+++++|.+.... ....+..+.+|+.+++..+... ..+
T Consensus       339 ~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~  413 (635)
T 4g8a_A          339 KFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS  413 (635)
T ss_dssp             EESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred             cccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence            7764433   345677778877776653 233345677888888887764321 1124556778888888888776 345


Q ss_pred             hhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315          405 DWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH  483 (693)
Q Consensus       405 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  483 (693)
                      ..+..+++|+.+++..+......+ ..+..+++++.+++++|.+.+..+..+..                          
T Consensus       414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~--------------------------  467 (635)
T 4g8a_A          414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------  467 (635)
T ss_dssp             SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------
T ss_pred             ccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc--------------------------
Confidence            567788888888888887665443 45778888888888888888777766655                          


Q ss_pred             CCcccccccceeeeecccceeeeccccccCcceEECCCCcc-cccCchhhccCCCCCeeeCCCccCCccCcccccCCCCC
Q 037315          484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKL-IGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI  562 (693)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  562 (693)
                                                 ++.++.|++++|.+ .+..|..|..+++|++|+|++|++++++|..|.++++|
T Consensus       468 ---------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          468 ---------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             ---------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ---------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence                                       45788899988874 44567788888999999999999988888889999999


Q ss_pred             CEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcccc-CcCCcccccCccCCCCCCCC--------------
Q 037315          563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF-ATFNENSYEGNTFLCGLPLP--------------  627 (693)
Q Consensus       563 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~~~--------------  627 (693)
                      ++|+|++|++++..|..|..+++|++|++++|++++..|+.+..+ .+++.+++++|||.|+|+..              
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~  600 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV  600 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence            999999999988888888888999999999999998888877766 57888889999999988652              


Q ss_pred             -----CCCCCCCCCccccccc
Q 037315          628 -----ICRSPTTMSEASIENE  643 (693)
Q Consensus       628 -----~c~~~~~~~~~~~~~~  643 (693)
                           .|..|...++..+.++
T Consensus       601 ~~~~~~C~~P~~~~g~~l~~~  621 (635)
T 4g8a_A          601 EVERMECATPSDKQGMPVLSL  621 (635)
T ss_dssp             CGGGCBBCSSTTTTTCBGGGC
T ss_pred             CCCCceeCCchHHCCCEeeee
Confidence                 4877777777666555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.1e-47  Score=422.87  Aligned_cols=393  Identities=19%  Similarity=0.237  Sum_probs=258.0

Q ss_pred             CCcccccCCCCCCCCCCCCEEEccCCcCccc-----------------CChhhh--hcCCCCcEEEccCCcccccCCccC
Q 037315          154 NDSLAGPFRLPIHSHRHLRLLDVSNNNFQGH-----------------IPVEIG--DILPRLISFNISMNALDGSIPSSF  214 (693)
Q Consensus       154 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----------------~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~  214 (693)
                      .|.+++ +|..++.+++|++|++++|.+++.                 +|..++  . +++|++|++++|.+.+.+|..+
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHH
Confidence            355665 566666677777777777776653                 666655  4 6677777777777776777777


Q ss_pred             CCCCCCCEEEcccCc-ccc-ccchHHhh-----CCCCCcEEEccccccccccCc--cCCCCCCCCeEeccCccccccCCc
Q 037315          215 GNMNLLQILDLSNNQ-LTG-EIPEHLAM-----GCVNLEFLALSNNSLKGHMFS--RNFNLINLRWLQLEGNHFVGEIPQ  285 (693)
Q Consensus       215 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~  285 (693)
                      +++++|++|++++|+ +++ .+|..+..     .+++|++|++++|+++ ..|.  .+..+++|++|++++|.+.+.+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            777777777777776 665 56665542     1266777777766666 3444  56666666666666666665556 


Q ss_pred             CCcCCCCCCEEeccCCcccccCCccccCCCC-CcEEEccCCccccCccccccCCC--CCCEEECcCCcCCCCCCCCCCCC
Q 037315          286 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTW-LIHIIMPKNHLEGPIPVEFCHLY--SLQILDISDNNISGSLPSCFHPL  362 (693)
Q Consensus       286 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~  362 (693)
                      .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+..++  +|+.|++++|.+.+..|..+...
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            5666666666666666666 55555666666 666666666665 4454444433  56666666666654444322100


Q ss_pred             cccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCC-------C
Q 037315          363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGL-------N  435 (693)
Q Consensus       363 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~  435 (693)
                                      .. ....+++|++|++++|.++...+..+..+++|++|++++|+++...+..+...       +
T Consensus       426 ----------------~~-~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~  488 (636)
T 4eco_A          426 ----------------DP-TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY  488 (636)
T ss_dssp             ----------------CS-SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred             ----------------cc-ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence                            00 11155688888888888885555556678888888888888884333333333       2


Q ss_pred             CCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcc
Q 037315          436 QLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS  515 (693)
Q Consensus       436 ~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  515 (693)
                      +|++|++++|+++. +|..+...                                                   .+++|+
T Consensus       489 ~L~~L~Ls~N~l~~-lp~~~~~~---------------------------------------------------~l~~L~  516 (636)
T 4eco_A          489 LLTSIDLRFNKLTK-LSDDFRAT---------------------------------------------------TLPYLV  516 (636)
T ss_dssp             GCCEEECCSSCCCB-CCGGGSTT---------------------------------------------------TCTTCC
T ss_pred             CccEEECcCCcCCc-cChhhhhc---------------------------------------------------cCCCcC
Confidence            88888888888873 44433200                                                   155788


Q ss_pred             eEECCCCcccccCchhhccCCCCCeeeC------CCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315          516 GLDLSCNKLIGHIPPQVGNLTRIQTLNL------SHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF  589 (693)
Q Consensus       516 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  589 (693)
                      +|++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+.++++|++|+|++|++ +.+|..+.  ++|+.|
T Consensus       517 ~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L  592 (636)
T 4eco_A          517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL  592 (636)
T ss_dssp             EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred             EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence            88888888886 7888888888888888      56778888899999999999999999999 46777655  799999


Q ss_pred             ecCCCcCcccCCCCccc--cCcCCcccccCccCCCCCC
Q 037315          590 SVAYNNLSGEIPEWKAQ--FATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       590 ~l~~N~l~~~~p~~~~~--~~~l~~~~~~~n~~~c~~~  625 (693)
                      ++++|++.+.....+..  ......+.+......|+|+
T Consensus       593 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             ECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             ECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence            99999888754433322  1222333444455555654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.8e-45  Score=404.79  Aligned_cols=479  Identities=19%  Similarity=0.202  Sum_probs=354.0

Q ss_pred             CCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315            2 ADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN   81 (693)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (693)
                      ++|+++.+ |..+.  ++|++|||++|+++ .++...|..+++|++|++++|++++..| ..+.++++|++|++++|.+.
T Consensus        13 ~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           13 RSRSFTSI-PSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             TTSCCSSC-CSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCC
T ss_pred             CCCccccc-cccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccC
Confidence            56777754 54443  79999999999998 5544489999999999999999986544 68999999999999999998


Q ss_pred             cccccccCCCCCCccccEEecCCCCCCCC-cCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc
Q 037315           82 AKITKSHTLTTPKFQLASLSLSSSYGDGV-TFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP  160 (693)
Q Consensus        82 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  160 (693)
                      +..+..+.   ...+|++|++ +++.+.+ ..|..++.+++|++|++++|...+.++...++++++|++|++++|.+++.
T Consensus        88 ~~~~~~~~---~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           88 SLSSSWFG---PLSSLKYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCHHHHT---TCTTCCEEEC-TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             ccCHHHhc---cCCCCcEEEC-CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            76554433   2348999999 6777765 46677889999999999999866666654458899999999999999988


Q ss_pred             CCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccC--C-ccCCCCCCCCEEEcccCccccccchH
Q 037315          161 FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSI--P-SSFGNMNLLQILDLSNNQLTGEIPEH  237 (693)
Q Consensus       161 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~  237 (693)
                      .+..+..+++|++|++++|.+. .+|..+...+++|++|++++|.+++..  + .....+++|+.|++++|.+.+..+..
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence            8888999999999999999886 667776666889999999999988642  1 23346788999999999887655444


Q ss_pred             Hh---hCCCCCcEEEccccccccccC------ccCCCCCCCCeEeccCccccccC-----CcCCcCCCCCCEEeccCCcc
Q 037315          238 LA---MGCVNLEFLALSNNSLKGHMF------SRNFNLINLRWLQLEGNHFVGEI-----PQSLSKCSSLEGLYLNNNSL  303 (693)
Q Consensus       238 ~~---~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~i  303 (693)
                      +.   ..+++|+.+++++|.+.+...      ..+..+++|+.|++.++.+....     +..+...++|+.|++++|.+
T Consensus       243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l  322 (549)
T 2z81_A          243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV  322 (549)
T ss_dssp             HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred             HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence            32   346788888888887765321      22345566666666666544211     01112234555566665555


Q ss_pred             cccCCccc-cCCCCCcEEEccCCccccCcc---ccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccC
Q 037315          304 SGKIPRWL-GNLTWLIHIIMPKNHLEGPIP---VEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLK  379 (693)
Q Consensus       304 ~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  379 (693)
                      . .+|..+ ..+++|++|++++|.+.+..|   ..+..+++|+.|++++|++.                       +..+
T Consensus       323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~~~~  378 (549)
T 2z81_A          323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-----------------------SMQK  378 (549)
T ss_dssp             C-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-----------------------CHHH
T ss_pred             c-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-----------------------cccc
Confidence            4 333333 345555555555555554332   12444555555555555543                       3221


Q ss_pred             -cccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccC
Q 037315          380 -GGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNT  458 (693)
Q Consensus       380 -~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  458 (693)
                       ...+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++..+  .++|++|++++|++++.++    . 
T Consensus       379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~----~-  449 (549)
T 2z81_A          379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL----F-  449 (549)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC----C-
T ss_pred             chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc----c-
Confidence             125778899999999999998 678888899999999999999984 34333  3699999999999886431    1 


Q ss_pred             ccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCC
Q 037315          459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRI  538 (693)
Q Consensus       459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  538 (693)
                                                                          +++|++|++++|+++ .+|. ...+++|
T Consensus       450 ----------------------------------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L  475 (549)
T 2z81_A          450 ----------------------------------------------------LPRLQELYISRNKLK-TLPD-ASLFPVL  475 (549)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred             ----------------------------------------------------CChhcEEECCCCccC-cCCC-cccCccC
Confidence                                                                568999999999998 4554 5679999


Q ss_pred             CeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCC
Q 037315          539 QTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP  577 (693)
Q Consensus       539 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  577 (693)
                      ++|+|++|++++.+|..|..+++|++|++++|++.+..|
T Consensus       476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999999999999999999999999999999999986655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-46  Score=417.63  Aligned_cols=453  Identities=18%  Similarity=0.210  Sum_probs=232.5

Q ss_pred             CCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCc------C------cCCcccccCCCCCcEEEccCCccccccc
Q 037315           18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFH------I------PISLEPLFNHSRLKIFYADNNPINAKIT   85 (693)
Q Consensus        18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~------~------~~~~~~~~~l~~L~~L~l~~n~~~~~~~   85 (693)
                      .+++.|+|+++.++|.+|+ .+++|++|++|+|++|.+.      +      .+|...   +.+|+ ++++.+.+.+..+
T Consensus        81 ~~V~~L~L~~~~l~g~lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~  155 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPR  155 (636)
T ss_dssp             CCEEEEECTTSCCEEEECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGG
T ss_pred             CCEEEEEecCcccCCcCCh-HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCch
Confidence            5799999999999999998 8999999999999999761      1      222111   34455 6666665555444


Q ss_pred             cccCCCCC----------------CccccEEecCC-CCCCCCcCchhhcCCCCCCEEEccCcccccc-------------
Q 037315           86 KSHTLTTP----------------KFQLASLSLSS-SYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE-------------  135 (693)
Q Consensus        86 ~~~~~~~~----------------~~~L~~L~L~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------  135 (693)
                      ..+.....                ...++.+.+.. .+.+++ +|..++.+++|++|++++|.+.+.             
T Consensus       156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  234 (636)
T 4eco_A          156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY  234 (636)
T ss_dssp             GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence            33221100                00111112211 223333 445555555555555555555443             


Q ss_pred             ----Cchhhhh--cCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCc-Ccc-cCChhhhhcCCCCcEEEccCCccc
Q 037315          136 ----FPNWLLE--NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN-FQG-HIPVEIGDILPRLISFNISMNALD  207 (693)
Q Consensus       136 ----~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~-~~~~~~~~~l~~L~~L~L~~n~i~  207 (693)
                          +|..+ +  ++++|++|++++|.+.+.++..++.+++|++|++++|+ +++ .+|..++. +.             
T Consensus       235 ~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~-------------  299 (636)
T 4eco_A          235 AQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LA-------------  299 (636)
T ss_dssp             HHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HH-------------
T ss_pred             hcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hh-------------
Confidence                44332 3  44555555555554444444444445555555555554 444 44444433 10             


Q ss_pred             ccCCccCCCCCCCCEEEcccCccccccch-HHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcC
Q 037315          208 GSIPSSFGNMNLLQILDLSNNQLTGEIPE-HLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQS  286 (693)
Q Consensus       208 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  286 (693)
                           .+..+++|++|++++|.++ .+|. ..+..+++|++|++++|.+.+..| .+..+++|++|++++|.++ .+|..
T Consensus       300 -----~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~  371 (636)
T 4eco_A          300 -----DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPAN  371 (636)
T ss_dssp             -----HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTT
T ss_pred             -----ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHh
Confidence                 0000145555555555544 4444 112234555555555555544344 4444555555555555554 44444


Q ss_pred             CcCCCC-CCEEeccCCcccccCCccccCCC--CCcEEEccCCccccCcccccc-------CCCCCCEEECcCCcCCCCCC
Q 037315          287 LSKCSS-LEGLYLNNNSLSGKIPRWLGNLT--WLIHIIMPKNHLEGPIPVEFC-------HLYSLQILDISDNNISGSLP  356 (693)
Q Consensus       287 l~~l~~-L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~  356 (693)
                      +..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+.+..|..+.       .+++|+.|++++|++.+..+
T Consensus       372 l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK  450 (636)
T ss_dssp             SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred             hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence            555555 555555555554 3444444332  455555555555554444444       44455555555555542111


Q ss_pred             CCCC-CCcccEEEccCcccccccCcccc-------cCCCCCcEEeCcCcccCCCcchhhh--CCCCCCEEEccCCccccc
Q 037315          357 SCFH-PLSITQVHLSKNMLHGQLKGGTF-------FNCSSLVTLDLSYNLLNGSIPDWID--GLSQLSHLILGNNNLEGE  426 (693)
Q Consensus       357 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~-------~~~~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~  426 (693)
                      ..+. .++|+.|++++|++. .++...+       .++++|++|++++|.++ .+|..+.  .+++|++|++++|++++ 
T Consensus       451 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          451 ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence            1110 112222222222221 1111111       12225555555555555 3444443  45555555555555553 


Q ss_pred             CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315          427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF  506 (693)
Q Consensus       427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (693)
                      +|..+..+++|++|++++|+                                                            
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~------------------------------------------------------------  547 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQR------------------------------------------------------------  547 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCB------------------------------------------------------------
T ss_pred             cChhhhcCCCCCEEECCCCc------------------------------------------------------------
Confidence            44444445555555554442                                                            


Q ss_pred             ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCC
Q 037315          507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIP  577 (693)
Q Consensus       507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  577 (693)
                                 ++++|++.+.+|..+..+++|++|+|++|+++. +|..+.  ++|+.|++++|++.....
T Consensus       548 -----------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          548 -----------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             -----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             -----------ccccCcccccChHHHhcCCCCCEEECCCCcCCc-cCHhHh--CcCCEEECcCCCCccccH
Confidence                       125677788888899999999999999999954 465555  799999999998875443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.9e-46  Score=405.38  Aligned_cols=454  Identities=18%  Similarity=0.190  Sum_probs=259.8

Q ss_pred             EEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCccccEEe
Q 037315           22 ILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLS  101 (693)
Q Consensus        22 ~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  101 (693)
                      +||+++|+++ .+|. .+.  ++|++|++++|.+++. +...+.++++|++|++++|.+++..+                
T Consensus         4 ~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------   62 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDI----------------   62 (520)
T ss_dssp             EEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEG----------------
T ss_pred             eEecCCCCcc-cccc-ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcCh----------------
Confidence            4555555555 4554 232  4555555555555432 22345555555555555554432211                


Q ss_pred             cCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEccCCc
Q 037315          102 LSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHRHLRLLDVSNNN  180 (693)
Q Consensus       102 L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~  180 (693)
                                  ..+..+++|++|++++|.+. .+|..   .+++|++|++++|.+++ ..+..++.+++|++|++++|.
T Consensus        63 ------------~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           63 ------------SVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             ------------GGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             ------------HHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence                        12223333333333333333 12221   33444444444444433 123334444444444444444


Q ss_pred             CcccCChhhhhcCCCC--cEEEccCCcc--cccCCccCCCCC-CCCEEEcccCccccccchHHhhCCCCCcEEEccccc-
Q 037315          181 FQGHIPVEIGDILPRL--ISFNISMNAL--DGSIPSSFGNMN-LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS-  254 (693)
Q Consensus       181 ~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-  254 (693)
                      +++   ..+. .+++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++...+..+++|+.|++++|. 
T Consensus       127 l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          127 LEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             CCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred             cch---hhcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence            432   1111 13344  5555555554  344444444333 122344445554444444444445555555555554 


Q ss_pred             ------cccccCccCCCCCCCCeEeccCccccccCCcCC---cCCCCCCEEeccCCcccccCCccc-----cCCCCCcEE
Q 037315          255 ------LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSL---SKCSSLEGLYLNNNSLSGKIPRWL-----GNLTWLIHI  320 (693)
Q Consensus       255 ------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~~~~~~~l-----~~l~~L~~L  320 (693)
                            +.+..+ .+..+++|+.|++++|.+.+..+..+   ...++|++|++++|.+.+.+|..+     +.+++|+.+
T Consensus       203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence                  333222 44455555555555555443211110   012356666666666665555555     556666666


Q ss_pred             EccCCccccCcc-ccccCC---CCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcC
Q 037315          321 IMPKNHLEGPIP-VEFCHL---YSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY  396 (693)
Q Consensus       321 ~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  396 (693)
                      ++++|.+  ..| ..+..+   .+|+.|++++|.+...                        +  .+..+++|++|++++
T Consensus       282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~------------------------~--~~~~l~~L~~L~Ls~  333 (520)
T 2z7x_B          282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM------------------------L--CPSKISPFLHLDFSN  333 (520)
T ss_dssp             EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC------------------------C--CCSSCCCCCEEECCS
T ss_pred             cccccce--ecchhhhhcccccCceeEEEcCCCccccc------------------------c--chhhCCcccEEEeEC
Confidence            6666665  222 223222   4566666666655421                        0  124677888888888


Q ss_pred             cccCCCcchhhhCCCCCCEEEccCCcccc--cCCcccCCCCCCCEEEccCCcCcccCC-CCcccCccccccCCCCCCchh
Q 037315          397 NLLNGSIPDWIDGLSQLSHLILGNNNLEG--EVPVQLCGLNQLQLLDLSNNNLHGLIP-PCFDNTKLHESYNNSSSPDEQ  473 (693)
Q Consensus       397 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~~~~~~~~~~~~  473 (693)
                      |.+++..|.++..+++|++|++++|++++  ..|..+..+++|++|++++|++.+.+| ..+..                
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~----------------  397 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW----------------  397 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC----------------
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc----------------
Confidence            88887778888888888888888888885  445668888888888888888877333 33333                


Q ss_pred             hhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc
Q 037315          474 FKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP  553 (693)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  553 (693)
                                                           +++|++|++++|++++..|..+.  ++|++|++++|+++.+ |
T Consensus       398 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p  437 (520)
T 2z7x_B          398 -------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-P  437 (520)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-C
T ss_pred             -------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc-c
Confidence                                                 45788899999988877766554  7899999999999854 6


Q ss_pred             ccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          554 STFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      ..+..+++|++|++++|+++...+..+..+++|++|++++|+++|.++
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            666689999999999999985444458889999999999999998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1e-44  Score=408.10  Aligned_cols=382  Identities=21%  Similarity=0.250  Sum_probs=300.6

Q ss_pred             CcCcccCChhhhhcCCCCcEEEccCCcccc-----------------cCCccCC--CCCCCCEEEcccCccccccchHHh
Q 037315          179 NNFQGHIPVEIGDILPRLISFNISMNALDG-----------------SIPSSFG--NMNLLQILDLSNNQLTGEIPEHLA  239 (693)
Q Consensus       179 n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~  239 (693)
                      |++++ +|..+.. +++|++|+|++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..+.
T Consensus       435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            67775 7877766 7888888888888887                 3788877  888888888888888878886654


Q ss_pred             hCCCCCcEEEccccc-ccc-ccCccCC-------CCCCCCeEeccCccccccCCc--CCcCCCCCCEEeccCCcccccCC
Q 037315          240 MGCVNLEFLALSNNS-LKG-HMFSRNF-------NLINLRWLQLEGNHFVGEIPQ--SLSKCSSLEGLYLNNNSLSGKIP  308 (693)
Q Consensus       240 ~~l~~L~~L~l~~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~  308 (693)
                       ++++|++|++++|+ +++ ..|..+.       .+++|++|++++|.+. .+|.  .+..+++|+.|++++|.++ .+|
T Consensus       513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence             58888888888887 776 5555443       4458999999999888 6777  7888889999999999888 666


Q ss_pred             ccccCCCCCcEEEccCCccccCccccccCCCC-CCEEECcCCcCCCCCCCCCCC---CcccEEEccCcccccccCcc--c
Q 037315          309 RWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYS-LQILDISDNNISGSLPSCFHP---LSITQVHLSKNMLHGQLKGG--T  382 (693)
Q Consensus       309 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~--~  382 (693)
                       .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..   .+|+.|++++|++.+.++.-  .
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             7888889999999999888 67777888888 999999999887 55665542   34889999999887765531  1


Q ss_pred             cc--CCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcc-cCC-------CCCCCEEEccCCcCcccCC
Q 037315          383 FF--NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ-LCG-------LNQLQLLDLSNNNLHGLIP  452 (693)
Q Consensus       383 ~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~-------l~~L~~L~l~~n~~~~~~~  452 (693)
                      +.  .+++|+.|++++|.++...+..+..+++|+.|++++|+++ .+|.. +..       +++|+.|+|++|+++ .+|
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp  744 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS  744 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred             hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence            11  4468999999999999544445568999999999999999 44443 332       239999999999998 444


Q ss_pred             CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315          453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV  532 (693)
Q Consensus       453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  532 (693)
                      ..+...                                                   .+++|+.|+|++|++.+ +|..+
T Consensus       745 ~~l~~~---------------------------------------------------~l~~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          745 DDFRAT---------------------------------------------------TLPYLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             GGGSTT---------------------------------------------------TCTTCCEEECCSSCCSS-CCCGG
T ss_pred             HHhhhc---------------------------------------------------cCCCcCEEEeCCCCCCc-cchhh
Confidence            444310                                                   16689999999999997 68889


Q ss_pred             ccCCCCCeeeCCC------ccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccc
Q 037315          533 GNLTRIQTLNLSH------NNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQ  606 (693)
Q Consensus       533 ~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  606 (693)
                      ..+++|+.|+|++      |++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+..+..
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence            9999999999976      888889999999999999999999999 57887765  69999999999998776665555


Q ss_pred             cCcCCcccccCccCCC--CCC
Q 037315          607 FATFNENSYEGNTFLC--GLP  625 (693)
Q Consensus       607 ~~~l~~~~~~~n~~~c--~~~  625 (693)
                      ........+.+|+..+  +|+
T Consensus       850 ~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          850 YIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             HHHTTCCEEECCTTSEEESCG
T ss_pred             cccchheeecCCCccccCCCC
Confidence            5555566677776554  665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-44  Score=405.54  Aligned_cols=481  Identities=17%  Similarity=0.186  Sum_probs=254.8

Q ss_pred             CCCCEEECCCCCCCCcCCccccCCCCCCCEEEC-CCCcCcCcCCcccccCCCCCcEEE-----cc----------CCccc
Q 037315           18 TSLRILDVSSNQLTGSISSSPLFYLTSIEELSL-SNNHFHIPISLEPLFNHSRLKIFY-----AD----------NNPIN   81 (693)
Q Consensus        18 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L-s~n~~~~~~~~~~~~~l~~L~~L~-----l~----------~n~~~   81 (693)
                      .+++.|+|+++.+.|.+|+ .+++|++|++|+| ++|.+.+..+.........+....     ..          ...+.
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5789999999999989998 8999999999999 888887664422111100000000     00          00000


Q ss_pred             ccccccc------C--CCCCCccccEEecCC-CCCCCCcCchhhcCCCCCCEEEccCcccccc-CchhhhhcCCCCCEEE
Q 037315           82 AKITKSH------T--LTTPKFQLASLSLSS-SYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE-FPNWLLENNTKLRQLS  151 (693)
Q Consensus        82 ~~~~~~~------~--~~~~~~~L~~L~L~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~  151 (693)
                      ......+      .  .......++.+.+.. .+.+.+ +|..++.+++|++|++++|.+.+. ++..+         +.
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~  471 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---------ED  471 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---------SC
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---------cc
Confidence            0000000      0  000001222222211 123333 445555555555555555555441 00000         00


Q ss_pred             ccCCcccccCCCCCC--CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCc-ccc-cCCccCC-------CCCCC
Q 037315          152 LVNDSLAGPFRLPIH--SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNA-LDG-SIPSSFG-------NMNLL  220 (693)
Q Consensus       152 l~~~~~~~~~~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~-------~l~~L  220 (693)
                      .+.+...+.+|..++  .+++|++|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..+.       .+++|
T Consensus       472 ~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L  550 (876)
T 4ecn_A          472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI  550 (876)
T ss_dssp             TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred             cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence            000000012444444  5555555555555555555544444 5555555555555 544 3443332       23366


Q ss_pred             CEEEcccCccccccch-HHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCC-CCEEec
Q 037315          221 QILDLSNNQLTGEIPE-HLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSS-LEGLYL  298 (693)
Q Consensus       221 ~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L  298 (693)
                      ++|++++|.+. .+|. ..+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++
T Consensus       551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred             cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence            66666666665 5555 12234666666666666665 333 5556666666666666666 55555666666 666666


Q ss_pred             cCCcccccCCccccCCCC--CcEEEccCCccccCccccc---c--CCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccC
Q 037315          299 NNNSLSGKIPRWLGNLTW--LIHIIMPKNHLEGPIPVEF---C--HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSK  371 (693)
Q Consensus       299 ~~n~i~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  371 (693)
                      ++|.++ .+|..+..++.  |+.|++++|.+.+..|...   .  .+++|+.|++++|.+..                  
T Consensus       627 s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~------------------  687 (876)
T 4ecn_A          627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK------------------  687 (876)
T ss_dssp             CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS------------------
T ss_pred             cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc------------------
Confidence            666665 45555554433  6666666666655433211   1  22355566665555541                  


Q ss_pred             cccccccCcccccCCCCCcEEeCcCcccCCCcchh-hh-------CCCCCCEEEccCCcccccCCcccC--CCCCCCEEE
Q 037315          372 NMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW-ID-------GLSQLSHLILGNNNLEGEVPVQLC--GLNQLQLLD  441 (693)
Q Consensus       372 n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~-------~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~  441 (693)
                            +|...+..+++|+.|++++|.+. .+|.. +.       ++++|++|+|++|+++ .+|..+.  .+++|+.|+
T Consensus       688 ------lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~  759 (876)
T 4ecn_A          688 ------FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMD  759 (876)
T ss_dssp             ------CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEE
T ss_pred             ------cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEE
Confidence                  12112233444444444444444 22221 11       1124555555555554 3344443  455555555


Q ss_pred             ccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECC-
Q 037315          442 LSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLS-  520 (693)
Q Consensus       442 l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls-  520 (693)
                      |++|++.+ +|..+..                                                     +++|+.|+|+ 
T Consensus       760 Ls~N~L~~-lp~~l~~-----------------------------------------------------L~~L~~L~Ls~  785 (876)
T 4ecn_A          760 VSYNCFSS-FPTQPLN-----------------------------------------------------SSQLKAFGIRH  785 (876)
T ss_dssp             CCSSCCSS-CCCGGGG-----------------------------------------------------CTTCCEEECCC
T ss_pred             eCCCCCCc-cchhhhc-----------------------------------------------------CCCCCEEECCC
Confidence            55555544 2333222                                                     3345555554 


Q ss_pred             -----CCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCc
Q 037315          521 -----CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNN  595 (693)
Q Consensus       521 -----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~  595 (693)
                           +|++.+.+|..+..+++|++|+|++|++. .+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|+
T Consensus       786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             CCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence                 47788889999999999999999999995 5566655  699999999999988777777776677777888887


Q ss_pred             Ccc
Q 037315          596 LSG  598 (693)
Q Consensus       596 l~~  598 (693)
                      +..
T Consensus       863 ~~~  865 (876)
T 4ecn_A          863 TQD  865 (876)
T ss_dssp             TSE
T ss_pred             ccc
Confidence            653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=394.86  Aligned_cols=437  Identities=20%  Similarity=0.188  Sum_probs=336.6

Q ss_pred             CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEE
Q 037315          120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISF  199 (693)
Q Consensus       120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  199 (693)
                      ++|++|++++|.+.+..+.. ++++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..   .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence            57777777777776554444 377888888888888888777777888888888888888887 56665   37788888


Q ss_pred             EccCCcccc-cCCccCCCCCCCCEEEcccCccccccchHHhhCCCCC--cEEEcccccc--ccccCccCCCCC-CCCeEe
Q 037315          200 NISMNALDG-SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNL--EFLALSNNSL--KGHMFSRNFNLI-NLRWLQ  273 (693)
Q Consensus       200 ~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~  273 (693)
                      ++++|.+++ ..|..|+++++|++|++++|.+.+    ..+..+++|  ++|++++|.+  .+..+..+..+. +...++
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            888888876 357788888888888888888763    123346777  8888888888  666666655544 233567


Q ss_pred             ccCccccccCC-cCCcCCCCCCEEeccCCc-------ccccCCccccCCCCCcEEEccCCccccCccccc---cCCCCCC
Q 037315          274 LEGNHFVGEIP-QSLSKCSSLEGLYLNNNS-------LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF---CHLYSLQ  342 (693)
Q Consensus       274 L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~  342 (693)
                      +++|.+.+..+ ..+..+++|+.|++++|.       +.+.++ .++.+++|++|++++|.+.+..+..+   ...++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence            77777665444 356678888888888886       554444 67788888888888887764322221   1246889


Q ss_pred             EEECcCCcCCCCCCCCC------CCCcccEEEccCcccccccCcccccCC---CCCcEEeCcCcccCCCcchhhhCCCCC
Q 037315          343 ILDISDNNISGSLPSCF------HPLSITQVHLSKNMLHGQLKGGTFFNC---SSLVTLDLSYNLLNGSIPDWIDGLSQL  413 (693)
Q Consensus       343 ~L~l~~n~~~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~L~~n~i~~~~~~~~~~l~~L  413 (693)
                      +|++++|++.+.+|..+      ....|+.+++++|.+  .+|...+..+   ++|+.|++++|.+....  .+..+++|
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L  326 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF  326 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence            99999998887766654      367788888888887  4553244333   67999999999987432  23689999


Q ss_pred             CEEEccCCcccccCCcccCCCCCCCEEEccCCcCccc--CCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccc
Q 037315          414 SHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL--IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKI  491 (693)
Q Consensus       414 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (693)
                      ++|++++|++++..|..+..+++|++|++++|++.+.  .|..+..                                  
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----------------------------------  372 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ----------------------------------  372 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----------------------------------
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh----------------------------------
Confidence            9999999999988899999999999999999999753  2233332                                  


Q ss_pred             cceeeeecccceeeeccccccCcceEECCCCcccccCch-hhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCc
Q 037315          492 QEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP-QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN  570 (693)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  570 (693)
                                         +++|++|++++|++.+.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|
T Consensus       373 -------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N  431 (520)
T 2z7x_B          373 -------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN  431 (520)
T ss_dssp             -------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred             -------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence                               66899999999999984554 488999999999999999988777665  79999999999


Q ss_pred             cccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315          571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       571 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      +++ .+|..+..+++|++|++++|+++...+..+..+.++..+++++||+.|+|+.
T Consensus       432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999 7788888999999999999999954334478889999999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.2e-42  Score=382.71  Aligned_cols=535  Identities=19%  Similarity=0.174  Sum_probs=339.8

Q ss_pred             CCCCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcc
Q 037315            1 MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPI   80 (693)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~   80 (693)
                      ||+|+|+++.|.+|.++++|++|||++|+|+ .+++++|.++++|++|+|++|+++ .+|...|.++++|++|++++|.+
T Consensus        59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCC
T ss_pred             eeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcC
Confidence            6899999999999999999999999999998 787768999999999999999997 45667899999999999999998


Q ss_pred             ccccccccCCCCCCccccEEecCCCCCCCC-cCchhhcCCCCCCEEEccCccccccCchhhhhcCCC----CCEEEccCC
Q 037315           81 NAKITKSHTLTTPKFQLASLSLSSSYGDGV-TFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTK----LRQLSLVND  155 (693)
Q Consensus        81 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----L~~L~l~~~  155 (693)
                      ++..+..+.   ...+|++|++ +.+.+.. ..|..++.+++|++|++++|.+.+..+..+ +.+.+    ...++++.|
T Consensus       137 ~~l~~~~~~---~L~~L~~L~L-s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          137 ASLENFPIG---HLKTLKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             CCSTTCCCT---TCTTCCEEEC-CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTC
T ss_pred             CCCChhhhh---cCcccCeecc-ccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccC
Confidence            764433222   2235666666 4444433 345555566666666666666554444332 22222    234555555


Q ss_pred             cccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcc------cccCCccCCCCCCCCEEEcccCc
Q 037315          156 SLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNAL------DGSIPSSFGNMNLLQILDLSNNQ  229 (693)
Q Consensus       156 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~  229 (693)
                      .+....+..+ ....++.+++++|.....++......++.++...+..+..      .......+..+..+...++..+.
T Consensus       212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            5543322222 2233445555555443223333333344444444332211      11111222222333333332221


Q ss_pred             cccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCc
Q 037315          230 LTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR  309 (693)
Q Consensus       230 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  309 (693)
                      ...                      ........+....+++.+.+.++.+....  .+.....++.|++.+|.+....+ 
T Consensus       291 ~~~----------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-  345 (635)
T 4g8a_A          291 LDY----------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT-  345 (635)
T ss_dssp             CCS----------------------CEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC-
T ss_pred             hcc----------------------cccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc-
Confidence            110                      00111223334445555555555444221  23344455555555555543222 


Q ss_pred             cccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCC---CCCCCcccEEEccCcccccccCcccccCC
Q 037315          310 WLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS---CFHPLSITQVHLSKNMLHGQLKGGTFFNC  386 (693)
Q Consensus       310 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  386 (693)
                        ..++.|+.+++..|.....  .....+++|+.+++++|.+......   .....+++.+++..+.......  .+..+
T Consensus       346 --~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~--~~~~l  419 (635)
T 4g8a_A          346 --LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS--NFLGL  419 (635)
T ss_dssp             --CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS--CCTTC
T ss_pred             --ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc--ccccc
Confidence              2334455555555554322  2233455666666666655422111   1224556666666665533322  56778


Q ss_pred             CCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc-ccCCCCcccCcccccc
Q 037315          387 SSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH-GLIPPCFDNTKLHESY  464 (693)
Q Consensus       387 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~l~~~~  464 (693)
                      ++|+.++++.+......+ ..+..+++++.++++.|.+.+..+..+..+++|++|++++|.+. +..|..|..       
T Consensus       420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-------  492 (635)
T 4g8a_A          420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------  492 (635)
T ss_dssp             TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------
T ss_pred             ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-------
Confidence            899999998877654433 46788899999999999999888888999999999999999754 455666655       


Q ss_pred             CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCC
Q 037315          465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS  544 (693)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  544 (693)
                                                                    +++|++|+|++|++++..|..|.++++|++|+|+
T Consensus       493 ----------------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls  526 (635)
T 4g8a_A          493 ----------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  526 (635)
T ss_dssp             ----------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             ----------------------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence                                                          5589999999999999999999999999999999


Q ss_pred             CccCCccCcccccCCCCCCEEeCCCccccccCCcccccC-CCCCEEecCCCcCcccCCC-CccccCc-CCcccccCccCC
Q 037315          545 HNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL-KELAVFSVAYNNLSGEIPE-WKAQFAT-FNENSYEGNTFL  621 (693)
Q Consensus       545 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~p~-~~~~~~~-l~~~~~~~n~~~  621 (693)
                      +|++++++|..|.++++|++|||++|++++..|..+..+ ++|++|++++|++.|.+.. |+.+|.. -...........
T Consensus       527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~  606 (635)
T 4g8a_A          527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME  606 (635)
T ss_dssp             TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCB
T ss_pred             CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCce
Confidence            999999999999999999999999999999999999988 6899999999999987652 2222211 111112234567


Q ss_pred             CCCCCC
Q 037315          622 CGLPLP  627 (693)
Q Consensus       622 c~~~~~  627 (693)
                      |..|..
T Consensus       607 C~~P~~  612 (635)
T 4g8a_A          607 CATPSD  612 (635)
T ss_dssp             BCSSTT
T ss_pred             eCCchH
Confidence            876653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.6e-42  Score=381.20  Aligned_cols=459  Identities=19%  Similarity=0.182  Sum_probs=280.9

Q ss_pred             CCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCCCCCCcc
Q 037315           17 MTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQ   96 (693)
Q Consensus        17 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~   96 (693)
                      +...+++|+++|+++ .+|. .+.  ++|++|++++|.+++ ++...+.++++|++|++++|.+++..+.          
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------   94 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFH----------   94 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTT----------
T ss_pred             cCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHH----------
Confidence            445588999999988 7887 443  789999999998874 4446788888999999988887654333          


Q ss_pred             ccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEE
Q 037315           97 LASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP-FRLPIHSHRHLRLLD  175 (693)
Q Consensus        97 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~  175 (693)
                                        .+..+++|++|++++|.+. .+|..   .+++|++|++++|.+++. .+..++.+++|++|+
T Consensus        95 ------------------~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~  152 (562)
T 3a79_B           95 ------------------VFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG  152 (562)
T ss_dssp             ------------------TTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred             ------------------HhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence                              2333444555555555444 23322   345555555555555442 223445555555555


Q ss_pred             ccCCcCcccCChhhhhcCCCC--cEEEccCCcc--cccCCccCCCCC--CCCEEEcccCccccccchHHhhCCCCCcEEE
Q 037315          176 VSNNNFQGHIPVEIGDILPRL--ISFNISMNAL--DGSIPSSFGNMN--LLQILDLSNNQLTGEIPEHLAMGCVNLEFLA  249 (693)
Q Consensus       176 l~~n~~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  249 (693)
                      +++|++++.   .+. .+++|  ++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.++
T Consensus       153 L~~n~l~~~---~~~-~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          153 LSAAKFRQL---DLL-PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             EECSBCCTT---TTG-GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             cCCCccccC---chh-hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEec
Confidence            555555421   111 12333  5555555555  444444444433  11 3344555554444444444455555555


Q ss_pred             ccccccc----cccCccCCCCCCCCeEeccCccccccC----CcCCcCCCCCCEEeccCCcccccCCccc-----cCCCC
Q 037315          250 LSNNSLK----GHMFSRNFNLINLRWLQLEGNHFVGEI----PQSLSKCSSLEGLYLNNNSLSGKIPRWL-----GNLTW  316 (693)
Q Consensus       250 l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~i~~~~~~~l-----~~l~~  316 (693)
                      +++|...    ......+..+++|+.++++++.+.+..    +.. ...++|++|++++|.+++.+|..+     ..++.
T Consensus       228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~  306 (562)
T 3a79_B          228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKS  306 (562)
T ss_dssp             EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred             ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchh
Confidence            5554311    001122334455555555544433210    010 112355566666665555555444     34444


Q ss_pred             CcEEEccCCccccCcc-cccc---CCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEE
Q 037315          317 LIHIIMPKNHLEGPIP-VEFC---HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTL  392 (693)
Q Consensus       317 L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  392 (693)
                      |+.+++..+.+  ..| ..+.   ...+|+.|++++|.+..                       ..   ....+++|++|
T Consensus       307 L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-----------------------~~---~~~~l~~L~~L  358 (562)
T 3a79_B          307 LMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-----------------------MV---CPPSPSSFTFL  358 (562)
T ss_dssp             EEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-----------------------CC---CCSSCCCCCEE
T ss_pred             eehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc-----------------------cc---CccCCCCceEE
Confidence            44444444443  112 1111   12456666666655431                       11   12567889999


Q ss_pred             eCcCcccCCCcchhhhCCCCCCEEEccCCcccccC--CcccCCCCCCCEEEccCCcCcccCC-CCcccCccccccCCCCC
Q 037315          393 DLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV--PVQLCGLNQLQLLDLSNNNLHGLIP-PCFDNTKLHESYNNSSS  469 (693)
Q Consensus       393 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~~~~~~~~  469 (693)
                      ++++|.+++..|..+.++++|++|++++|++++..  |..+.++++|++|++++|++.+.+| ..+..            
T Consensus       359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------------  426 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------------  426 (562)
T ss_dssp             ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC------------
T ss_pred             ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC------------
Confidence            99999998878888899999999999999998633  4668889999999999999987343 33433            


Q ss_pred             CchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCC
Q 037315          470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLT  549 (693)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (693)
                                                               +++|++|++++|++++..|..+.  ++|++|++++|+++
T Consensus       427 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          427 -----------------------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             -----------------------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence                                                     55899999999999876665544  79999999999999


Q ss_pred             ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315          550 GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE  602 (693)
Q Consensus       550 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  602 (693)
                      .+ |..+.++++|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus       464 ~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          464 SI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             cc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            65 55555999999999999999954444589999999999999999987763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.6e-41  Score=359.89  Aligned_cols=372  Identities=21%  Similarity=0.214  Sum_probs=271.1

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcc
Q 037315          172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS  251 (693)
Q Consensus       172 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  251 (693)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35666666665 5665 2   35778888888877777777778888888888888877656666556667888888888


Q ss_pred             ccccccccCccCCCCCCCCeEeccCccccccCCc--CCcCCCCCCEEeccCCcccccCCcc-ccCCCCCcEEEccCCccc
Q 037315          252 NNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQ--SLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTWLIHIIMPKNHLE  328 (693)
Q Consensus       252 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~l~~n~~~  328 (693)
                      +|.+.+..+..+.++++|++|++++|.+++..+.  .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            8888777777777788888888888877754333  3777788888888888877666655 677788888888888877


Q ss_pred             cCccccccCC--CCCCEEECcCCcCCCCCCCC---------CCCCcccEEEccCcccccccCcccccC---CCCCcEEeC
Q 037315          329 GPIPVEFCHL--YSLQILDISDNNISGSLPSC---------FHPLSITQVHLSKNMLHGQLKGGTFFN---CSSLVTLDL  394 (693)
Q Consensus       329 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L  394 (693)
                      +..+..+..+  .+|+.|++++|.+.+..+..         +..++|+.|++++|++.+..+. .+..   .++|+.|++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence            7766666654  57778888888776544332         2345677777777777655543 2222   367777777


Q ss_pred             cCcccCCC----------cchhhhC--CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccc
Q 037315          395 SYNLLNGS----------IPDWIDG--LSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE  462 (693)
Q Consensus       395 ~~n~i~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  462 (693)
                      ++|...+.          .+..+.+  .++|++|++++|.+++..+..+..+++|++|++++|++.+..|..|..     
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----  321 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-----  321 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence            77754321          1112222  367888888888888777888888888888888888888777776655     


Q ss_pred             ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315          463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN  542 (693)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  542 (693)
                                                                      +++|++|++++|++.+..|..|..+++|++|+
T Consensus       322 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          322 ------------------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ------------------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                                            44788888888888877778888888888888


Q ss_pred             CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315          543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE  602 (693)
Q Consensus       543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  602 (693)
                      |++|+++++.|..|.++++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            888888888788888888888888888888877777778888888888888888888774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-41  Score=370.89  Aligned_cols=435  Identities=20%  Similarity=0.201  Sum_probs=321.7

Q ss_pred             CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEE
Q 037315          120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISF  199 (693)
Q Consensus       120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  199 (693)
                      +++++|++++|.+.+..+.. ++++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..   .+++|++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred             CCcCEEECCCCCccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence            56777777877777554444 377888888888888888777777888888888888888887 66665   37888888


Q ss_pred             EccCCccccc-CCccCCCCCCCCEEEcccCccccccchHHhhCCCCC--cEEEcccccc--ccccCccCCCCC--CCCeE
Q 037315          200 NISMNALDGS-IPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNL--EFLALSNNSL--KGHMFSRNFNLI--NLRWL  272 (693)
Q Consensus       200 ~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l~--~L~~L  272 (693)
                      ++++|.+++. .|..|+++++|++|++++|.+.+ ..   +..+++|  ++|++++|.+  .+..+..+..+.  .+ .+
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l  201 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HL  201 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-EE
Confidence            8888888763 35778888888888888888763 21   2234555  8888888888  666666665543  22 45


Q ss_pred             eccCccccccCC-cCCcCCCCCCEEeccCCccc----ccCCccccCCCCCcEEEccCCccccCc----cccccCCCCCCE
Q 037315          273 QLEGNHFVGEIP-QSLSKCSSLEGLYLNNNSLS----GKIPRWLGNLTWLIHIIMPKNHLEGPI----PVEFCHLYSLQI  343 (693)
Q Consensus       273 ~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~  343 (693)
                      ++++|.+.+..+ ..+..+++|+.+++++|...    ......+..++.|+.+++.++.+.+..    +.. ...++|++
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~  280 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEY  280 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEE
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccE
Confidence            677777665444 24556778888888887421    012234667788888888777654321    111 23458899


Q ss_pred             EECcCCcCCCCCCCCCC---CCcccEE---EccCcccccccCccccc---CCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315          344 LDISDNNISGSLPSCFH---PLSITQV---HLSKNMLHGQLKGGTFF---NCSSLVTLDLSYNLLNGSIPDWIDGLSQLS  414 (693)
Q Consensus       344 L~l~~n~~~~~~~~~~~---~~~L~~L---~l~~n~~~~~~~~~~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  414 (693)
                      |++++|.+.+.+|..+.   ..+++.|   ++..+.+  .+|...+.   ...+|++|++++|.+....  ....+++|+
T Consensus       281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~  356 (562)
T 3a79_B          281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFT  356 (562)
T ss_dssp             EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             EEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCce
Confidence            99999988877666431   1344444   4444443  23321222   2267999999999986432  136889999


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccC--CCCcccCccccccCCCCCCchhhhHhhhhcccCCccccccc
Q 037315          415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI--PPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQ  492 (693)
Q Consensus       415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (693)
                      +|++++|++++..|..+.++++|++|++++|++++..  |..+..                                   
T Consensus       357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-----------------------------------  401 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-----------------------------------  401 (562)
T ss_dssp             EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-----------------------------------
T ss_pred             EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-----------------------------------
Confidence            9999999999888999999999999999999998643  233333                                   


Q ss_pred             ceeeeecccceeeeccccccCcceEECCCCcccccCc-hhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcc
Q 037315          493 EFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP-PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK  571 (693)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  571 (693)
                                        +++|++|++++|++.+.+| ..+..+++|++|++++|++++..|..+.  ++|++|++++|+
T Consensus       402 ------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~  461 (562)
T 3a79_B          402 ------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR  461 (562)
T ss_dssp             ------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred             ------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence                              5689999999999998444 4588999999999999999887666654  799999999999


Q ss_pred             ccccCCcccccCCCCCEEecCCCcCcccCCCC-ccccCcCCcccccCccCCCCCCC
Q 037315          572 LNGKIPHQLVELKELAVFSVAYNNLSGEIPEW-KAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       572 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      ++ .+|..+..+++|++|++++|++++ +|.. +..++.+..+++++||+.|+|+.
T Consensus       462 l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          462 IM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             Cc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            98 667767799999999999999995 5554 78889999999999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-39  Score=349.73  Aligned_cols=373  Identities=23%  Similarity=0.258  Sum_probs=319.4

Q ss_pred             CcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcccccccc-ccCccCCCCCCCCeEec
Q 037315          196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG-HMFSRNFNLINLRWLQL  274 (693)
Q Consensus       196 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L  274 (693)
                      -+.++.+++.++ .+|. +  .++|++|++++|.+.+..|. .+.++++|++|++++|.+.+ +.+..|.++++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            346778888877 4555 3  37899999999999844444 44579999999999999874 45677999999999999


Q ss_pred             cCccccccCCcCCcCCCCCCEEeccCCcccccCCcc--ccCCCCCcEEEccCCccccCcccc-ccCCCCCCEEECcCCcC
Q 037315          275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW--LGNLTWLIHIIMPKNHLEGPIPVE-FCHLYSLQILDISDNNI  351 (693)
Q Consensus       275 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~  351 (693)
                      ++|.+++..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            999999888999999999999999999998754444  899999999999999999887776 88999999999999999


Q ss_pred             CCCCCCCCC---CCcccEEEccCcccccccCc-------ccccCCCCCcEEeCcCcccCCCcchhhhCC---CCCCEEEc
Q 037315          352 SGSLPSCFH---PLSITQVHLSKNMLHGQLKG-------GTFFNCSSLVTLDLSYNLLNGSIPDWIDGL---SQLSHLIL  418 (693)
Q Consensus       352 ~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~-------~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L  418 (693)
                      .+..+..+.   ...++.+++++|.+.+..+.       ..+..+++|++|++++|.+++..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            988776654   36899999999998654332       123456899999999999998888777654   89999999


Q ss_pred             cCCcccccC----------CcccCC--CCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCc
Q 037315          419 GNNNLEGEV----------PVQLCG--LNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH  486 (693)
Q Consensus       419 ~~n~l~~~~----------~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (693)
                      ++|...+..          +..+..  .++|++|++++|.+.+..|..+..                             
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----------------------------  297 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-----------------------------  297 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence            998665322          112222  368999999999999988888766                             


Q ss_pred             ccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEe
Q 037315          487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD  566 (693)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  566 (693)
                                              +++|++|++++|++.+..|..|..+++|++|++++|.++++.|..|.++++|++|+
T Consensus       298 ------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          298 ------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             ------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                    55899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315          567 LSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       567 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      |++|++++..|..+..+++|++|++++|++++..+..+..+++++.+++++||+.|+||.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999999999999987777778899999999999999999984

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.3e-39  Score=340.85  Aligned_cols=267  Identities=24%  Similarity=0.276  Sum_probs=147.7

Q ss_pred             chhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccccccccccCC
Q 037315           11 PWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINAKITKSHTL   90 (693)
Q Consensus        11 ~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~   90 (693)
                      |+.+ +.++|++|++++|.+ +.+|. .++++++|++|++++|.+.+.+| ..++++++|+.+++..|..          
T Consensus         5 p~~~-~~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~----------   70 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD----------   70 (454)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH----------
T ss_pred             cccc-ccccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc----------
Confidence            3434 468899999999999 48988 78999999999999998887777 4677777766655554421          


Q ss_pred             CCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCC
Q 037315           91 TTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRH  170 (693)
Q Consensus        91 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  170 (693)
                                                   .++++|++++|.+.+ +|.    -.++|++|++++|.+++ ++.   ..++
T Consensus        71 -----------------------------~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-lp~---~~~~  112 (454)
T 1jl5_A           71 -----------------------------RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-LPE---LPQS  112 (454)
T ss_dssp             -----------------------------HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-CCC---CCTT
T ss_pred             -----------------------------cCCCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-ccc---ccCC
Confidence                                         123344444444332 221    12456666666666654 222   2356


Q ss_pred             CCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEc
Q 037315          171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL  250 (693)
Q Consensus       171 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  250 (693)
                      |++|++++|+++ .++..    .++|++|++++|.+++ +| .++++++|++|++++|+++ .+|..    ..+|++|++
T Consensus       113 L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L  180 (454)
T 1jl5_A          113 LKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAA  180 (454)
T ss_dssp             CCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEEC
T ss_pred             CcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEEC
Confidence            777777777766 33321    2577777777777775 55 4777777888888877776 45542    347777777


Q ss_pred             cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccC
Q 037315          251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP  330 (693)
Q Consensus       251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  330 (693)
                      ++|.+.+. + .+..+++|++|++++|.+++ +|..   .++|++|++++|.+. .+| .++.+++|++|++++|++.+.
T Consensus       181 ~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          181 GNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             CSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred             cCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc
Confidence            77777763 3 46777777777777777764 3332   246777777777766 444 366667777777777766642


Q ss_pred             ccccccCCCCCCEEECcCCcCCC
Q 037315          331 IPVEFCHLYSLQILDISDNNISG  353 (693)
Q Consensus       331 ~~~~~~~l~~L~~L~l~~n~~~~  353 (693)
                       |.   .+++|+.|++++|++.+
T Consensus       253 -~~---~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          253 -PD---LPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             -CS---CCTTCCEEECCSSCCSC
T ss_pred             -cc---cccccCEEECCCCcccc
Confidence             22   23566666666666653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-37  Score=330.12  Aligned_cols=404  Identities=25%  Similarity=0.290  Sum_probs=158.7

Q ss_pred             ccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEE
Q 037315           95 FQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLL  174 (693)
Q Consensus        95 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  174 (693)
                      ..|++|++ +++.+ +.+|..++.+++|++|++++|.+.+.+|..+ +++++|+.+++.+|..           .++++|
T Consensus        11 ~~L~~L~l-~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L   76 (454)
T 1jl5_A           11 TFLQEPLR-HSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHEL   76 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred             ccchhhhc-ccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEE
Confidence            36677777 55555 5666666777777777777776666666554 4444431111111110           123444


Q ss_pred             EccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccc
Q 037315          175 DVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS  254 (693)
Q Consensus       175 ~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  254 (693)
                      ++++|.++ .+|.    ..++|++|++++|.+++ +|..   .++|++|++++|.+. .++..    .++|++|++++|+
T Consensus        77 ~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~  142 (454)
T 1jl5_A           77 ELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQ  142 (454)
T ss_dssp             ECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSC
T ss_pred             EecCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCC
Confidence            44444444 2222    12344444444444443 2321   244444555444444 22211    1344555555554


Q ss_pred             cccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCcccc
Q 037315          255 LKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE  334 (693)
Q Consensus       255 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  334 (693)
                      +.+ .| .+..+++|++|++++|++++ +|..+   ++|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|..
T Consensus       143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~  213 (454)
T 1jl5_A          143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL  213 (454)
T ss_dssp             CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred             CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence            444 22 24444455555555554442 22211   244555555554443 22 34444555555555554443 1111


Q ss_pred             ccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315          335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS  414 (693)
Q Consensus       335 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  414 (693)
                         .++|++|++++|.+. .+|.....++|+.|++++|++.+ ++.    .+++|+.|++++|.+++ +|..   .++|+
T Consensus       214 ---~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~  280 (454)
T 1jl5_A          214 ---PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLT  280 (454)
T ss_dssp             ---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred             ---cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCC
Confidence               134555555555444 23333334445555555554432 221    12455555555555553 2321   24555


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccce
Q 037315          415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF  494 (693)
Q Consensus       415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (693)
                      +|++++|++++. +.   -.++|++|++++|++.+...                                          
T Consensus       281 ~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~~------------------------------------------  314 (454)
T 1jl5_A          281 FLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLCD------------------------------------------  314 (454)
T ss_dssp             EEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEECC------------------------------------------
T ss_pred             EEECcCCccCcc-cC---cCCcCCEEECcCCcCCcccC------------------------------------------
Confidence            666666555532 11   01455566666655543210                                          


Q ss_pred             eeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315          495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG  574 (693)
Q Consensus       495 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  574 (693)
                                     .+++|++|++++|++++ +|..   +++|++|++++|+++++ |.   .+++|++|++++|++++
T Consensus       315 ---------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          315 ---------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             ---------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS
T ss_pred             ---------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCc
Confidence                           01245666666666554 3322   35666666666666643 22   34566666666666665


Q ss_pred             --cCCcccccC-------------CCCCEEecCCCcCcc--cCCCCccccCcCCcccccCccCCCC
Q 037315          575 --KIPHQLVEL-------------KELAVFSVAYNNLSG--EIPEWKAQFATFNENSYEGNTFLCG  623 (693)
Q Consensus       575 --~~~~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~l~~~~~~~n~~~c~  623 (693)
                        .+|..+..+             ++|++|++++|++++  .+|.+      +..+.+.+|...|.
T Consensus       372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~  431 (454)
T 1jl5_A          372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDP  431 (454)
T ss_dssp             CCCCCTTCCEEECCC---------------------------------------------------
T ss_pred             CCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCc
Confidence              455555554             789999999999987  66654      44455566655554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=335.86  Aligned_cols=347  Identities=19%  Similarity=0.162  Sum_probs=231.5

Q ss_pred             cEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccC
Q 037315          197 ISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEG  276 (693)
Q Consensus       197 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  276 (693)
                      +.++.+++.++ .+|..+.  +.+++|++++|.++ .++...+.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45566666555 3444332  45666666666666 34333344566666666666666666666666666666666666


Q ss_pred             ccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCC
Q 037315          277 NHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLP  356 (693)
Q Consensus       277 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  356 (693)
                      |.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+   
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---  166 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---  166 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence            66665444455666666666666666665555566666666666666666665555556666666666666665542   


Q ss_pred             CCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCC
Q 037315          357 SCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQ  436 (693)
Q Consensus       357 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (693)
                                           ++...+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+..+.......+
T Consensus       167 ---------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          167 ---------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             ---------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             ---------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                                 22235677788888888888887766677788888888888887776666666666668


Q ss_pred             CCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcce
Q 037315          437 LQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG  516 (693)
Q Consensus       437 L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  516 (693)
                      |++|++++|++++..+..|..                                                     +++|+.
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~  252 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRH-----------------------------------------------------LVYLRF  252 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTT-----------------------------------------------------CTTCCE
T ss_pred             ccEEECcCCcccccCHHHhcC-----------------------------------------------------ccccCe
Confidence            888888888777554444433                                                     457888


Q ss_pred             EECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcC
Q 037315          517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL  596 (693)
Q Consensus       517 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  596 (693)
                      |+|++|++.+..+..|..+++|++|+|++|+++++.|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            88888888877777788888888888888888888788888888888888888888877777777888888888888888


Q ss_pred             cccCCCCccccCcCCcccccCccCCCCCC
Q 037315          597 SGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       597 ~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      .|.++.. ..+.......+.++...|..|
T Consensus       333 ~c~c~~~-~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          333 ACDCRLL-WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             ECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred             cCccchH-hHHhhhhccccCccCceeCCc
Confidence            7765421 112223334556666666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=333.76  Aligned_cols=350  Identities=21%  Similarity=0.198  Sum_probs=296.5

Q ss_pred             CCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEc
Q 037315          171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL  250 (693)
Q Consensus       171 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  250 (693)
                      -+.++.+++.++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence            357888888887 7887653   58999999999999888889999999999999999998 454444557999999999


Q ss_pred             cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccC
Q 037315          251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP  330 (693)
Q Consensus       251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  330 (693)
                      ++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            99999988878889999999999999999988888899999999999999999988888999999999999999999987


Q ss_pred             ccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCC
Q 037315          331 IPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGL  410 (693)
Q Consensus       331 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l  410 (693)
                      .+..+..+++|+.|++++|.+.+.                        +...|..+++|+.|++++|...+.++......
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccC
Confidence            777889999999999999988632                        22367788999999999998877777766667


Q ss_pred             CCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccc
Q 037315          411 SQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKK  490 (693)
Q Consensus       411 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (693)
                      .+|++|++++|++++..+..+..+++|+.|++++|++.+..+..|..                                 
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------  270 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---------------------------------  270 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence            79999999999999666677899999999999999999887777755                                 


Q ss_pred             ccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCc
Q 037315          491 IQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN  570 (693)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  570 (693)
                                          +++|++|+|++|++.+..|..|..+++|++|+|++|+++++.+..|..+++|++|++++|
T Consensus       271 --------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          271 --------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             --------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             --------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence                                558999999999999999999999999999999999999998889999999999999999


Q ss_pred             cccccCCcccccCCCCCEEecCCCcCcccCCCC
Q 037315          571 KLNGKIPHQLVELKELAVFSVAYNNLSGEIPEW  603 (693)
Q Consensus       571 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~  603 (693)
                      ++.+..+. ..-......+.+.++...|..|..
T Consensus       331 ~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          331 PLACDCRL-LWVFRRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             CEECSGGG-HHHHTTTTSSCCTTCCCBEEESGG
T ss_pred             CccCccch-HhHHhhhhccccCccCceeCCchH
Confidence            99754321 111233444566777777766653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.7e-36  Score=321.61  Aligned_cols=347  Identities=27%  Similarity=0.392  Sum_probs=247.9

Q ss_pred             cCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCE
Q 037315          143 NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQI  222 (693)
Q Consensus       143 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  222 (693)
                      .++++++|++.++.+...  ..+..+++|++|++++|.++ .++. +. .+++|++|++++|.+.+..+  +.++++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccC--cchhhhcCCCEEECCCCccC-Cchh-hh-ccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            346777777777776642  23566777777777777776 3443 33 36777777777777764433  777777777


Q ss_pred             EEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCc
Q 037315          223 LDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS  302 (693)
Q Consensus       223 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  302 (693)
                      |++++|.+. .++.  +..+++|++|++++|.+.+..  .+..+++|++|+++ +.+.+.  ..+..+++|+.|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            777777776 4443  345777777777777766532  36667777777775 333322  226666777777777776


Q ss_pred             ccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 037315          303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT  382 (693)
Q Consensus       303 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  382 (693)
                      +.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|++.+                        +  ..
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------------------~--~~  238 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD------------------------I--GT  238 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------C--GG
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc------------------------c--hh
Confidence            6532  235666666666666666665433  4556666666666665542                        1  15


Q ss_pred             ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccc
Q 037315          383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE  462 (693)
Q Consensus       383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  462 (693)
                      +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++.+..+  +..     
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~-----  307 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN-----  307 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----
Confidence            6678889999999998886544  8888999999999999886544  7888999999999998876543  222     


Q ss_pred             ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315          463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN  542 (693)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  542 (693)
                                                                      +++|+.|++++|++.+..|  +..+++|++|+
T Consensus       308 ------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          308 ------------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             ------------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             ------------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence                                                            5689999999999887655  78899999999


Q ss_pred             CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCccc
Q 037315          543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGE  599 (693)
Q Consensus       543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  599 (693)
                      +++|++++.  ..+.++++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999999876  578889999999999999987776  78899999999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-35  Score=317.27  Aligned_cols=347  Identities=27%  Similarity=0.373  Sum_probs=286.3

Q ss_pred             CCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCc
Q 037315          118 YQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI  197 (693)
Q Consensus       118 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  197 (693)
                      .++++++|++.++.+.. +|.  +..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++. +. .+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred             HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence            45789999999998864 453  3789999999999999987544  889999999999999998 4444 44 489999


Q ss_pred             EEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCc
Q 037315          198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGN  277 (693)
Q Consensus       198 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  277 (693)
                      +|++++|.+++..+  +.++++|++|++++|.+. .++.  +..+++|++|+++ +.+.+..  .+..+++|++|++++|
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            99999999986533  899999999999999998 5654  4569999999997 4555433  3889999999999999


Q ss_pred             cccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCC
Q 037315          278 HFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPS  357 (693)
Q Consensus       278 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  357 (693)
                      .+.+.  ..+..+++|+.|++++|.+.+..+  ++.+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..  
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--  259 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--  259 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--
Confidence            98854  358899999999999999986655  77899999999999999864  46788999999999999886321  


Q ss_pred             CCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCC
Q 037315          358 CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQL  437 (693)
Q Consensus       358 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  437 (693)
                                              .+..+++|++|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|
T Consensus       260 ------------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          260 ------------------------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             ------------------------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             ------------------------hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence                                    25677888888888888885543  7788889999999998886544  7788899


Q ss_pred             CEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceE
Q 037315          438 QLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGL  517 (693)
Q Consensus       438 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  517 (693)
                      +.|++++|++.+..|  +..                                                     +++|++|
T Consensus       312 ~~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L  336 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRL  336 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEE
T ss_pred             CEEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEe
Confidence            999999998876654  222                                                     5689999


Q ss_pred             ECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccccc
Q 037315          518 DLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK  575 (693)
Q Consensus       518 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  575 (693)
                      ++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            9999998865  468889999999999999998876  88899999999999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-35  Score=309.83  Aligned_cols=334  Identities=22%  Similarity=0.201  Sum_probs=195.9

Q ss_pred             CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEe
Q 037315          218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLY  297 (693)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  297 (693)
                      +++++|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            44445555554444 44444444455555555555555544444455555555555555555544444445555555555


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccc
Q 037315          298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQ  377 (693)
Q Consensus       298 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~  377 (693)
                      +++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..  ....++|+.+++++|.+.+ 
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~-  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc-
Confidence            5555554333333444555555555555555444444555555555555555544321  1123444555555544422 


Q ss_pred             cCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315          378 LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN  457 (693)
Q Consensus       378 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  457 (693)
                           +...++|++|++++|.+... +.  ...++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|..|..
T Consensus       201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence                 22335677777777776633 22  2246677777777777643  45667777777777777777666655544


Q ss_pred             CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC
Q 037315          458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR  537 (693)
Q Consensus       458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  537 (693)
                                                                           +++|++|++++|++++ +|..+..+++
T Consensus       271 -----------------------------------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~  296 (390)
T 3o6n_A          271 -----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPT  296 (390)
T ss_dssp             -----------------------------------------------------CSSCCEEECCSSCCCE-EECSSSCCTT
T ss_pred             -----------------------------------------------------cccCCEEECCCCcCcc-cCcccCCCCC
Confidence                                                                 4467777777777764 3555567788


Q ss_pred             CCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccC
Q 037315          538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEG  617 (693)
Q Consensus       538 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~  617 (693)
                      |++|++++|+++++ |..+..+++|++|++++|+++.. +  +..+++|+.|++++|++.|....  ..+..+....+.+
T Consensus       297 L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~  370 (390)
T 3o6n_A          297 LKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDD  370 (390)
T ss_dssp             CCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCC
T ss_pred             CCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccc
Confidence            88888888888754 55677788888888888888754 2  56778888888888888875332  3345556666777


Q ss_pred             ccCCCCCC
Q 037315          618 NTFLCGLP  625 (693)
Q Consensus       618 n~~~c~~~  625 (693)
                      ++..|.++
T Consensus       371 ~~~~c~~~  378 (390)
T 3o6n_A          371 ADQHCKID  378 (390)
T ss_dssp             CCSCCCTT
T ss_pred             cCceeccc
Confidence            88777754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=6.6e-36  Score=317.36  Aligned_cols=361  Identities=17%  Similarity=0.120  Sum_probs=223.7

Q ss_pred             CchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhh
Q 037315          112 FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD  191 (693)
Q Consensus       112 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~  191 (693)
                      .+..++.+++|++|++++|.+.+. | . ++.+++|++|++++|.+++.   +++.+++|++|++++|++++ ++  +. 
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~-  103 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT-  103 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC-
Confidence            344556667777777777777653 4 2 36677777777777777653   26667777777777777763 33  33 


Q ss_pred             cCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCe
Q 037315          192 ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW  271 (693)
Q Consensus       192 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  271 (693)
                      .+++|++|++++|.+++. +  ++++++|++|++++|+++ .++   ...+++|++|++++|...+..  .+..+++|++
T Consensus       104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            266777777777776643 2  666777777777777766 343   234667777777766433322  3556666777


Q ss_pred             EeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcC
Q 037315          272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNI  351 (693)
Q Consensus       272 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  351 (693)
                      |++++|.+++ +|  +..+++|+.|++++|.+++.   .++.+++|++|++++|++.+ +|  +..+++|+.|++++|++
T Consensus       175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence            7777776664 23  55666666777766666643   25566666666666666665 23  55666666666666666


Q ss_pred             CCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCccc
Q 037315          352 SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL  431 (693)
Q Consensus       352 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  431 (693)
                      .+..                           ...+++|+.|++++|              +|+.|++++|++.+.+|  +
T Consensus       246 ~~~~---------------------------~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~  282 (457)
T 3bz5_A          246 TELD---------------------------VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--A  282 (457)
T ss_dssp             SCCC---------------------------CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--C
T ss_pred             CCcC---------------------------HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--c
Confidence            5432                           223344444444433              23334444444443333  3


Q ss_pred             CCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccc
Q 037315          432 CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVL  511 (693)
Q Consensus       432 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  511 (693)
                      ..+++|+.|++++|+..+.+|......+..                                             .-...
T Consensus       283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L---------------------------------------------~l~~~  317 (457)
T 3bz5_A          283 EGCRKIKELDVTHNTQLYLLDCQAAGITEL---------------------------------------------DLSQN  317 (457)
T ss_dssp             TTCTTCCCCCCTTCTTCCEEECTTCCCSCC---------------------------------------------CCTTC
T ss_pred             cccccCCEEECCCCcccceeccCCCcceEe---------------------------------------------chhhc
Confidence            344555555555555444333221111100                                             00013


Q ss_pred             cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315          512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV  591 (693)
Q Consensus       512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  591 (693)
                      ++|++|++++|++++.   .++.+++|+.|++++|+++++        +.|+.|++++|.+.+.     ..+..|+.+++
T Consensus       318 ~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l  381 (457)
T 3bz5_A          318 PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETL  381 (457)
T ss_dssp             TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred             ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCcccc
Confidence            4789999999999875   388899999999999999863        5677788999999865     34556788899


Q ss_pred             CCCcCcccCCCCc
Q 037315          592 AYNNLSGEIPEWK  604 (693)
Q Consensus       592 ~~N~l~~~~p~~~  604 (693)
                      ++|+++|.+|..+
T Consensus       382 ~~N~l~g~ip~~~  394 (457)
T 3bz5_A          382 TNNSLTIAVSPDL  394 (457)
T ss_dssp             BTTBEEEECCTTC
T ss_pred             ccCcEEEEcChhH
Confidence            9999999998743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.4e-35  Score=309.31  Aligned_cols=69  Identities=17%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             CccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCccc
Q 037315            6 LRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPIN   81 (693)
Q Consensus         6 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~   81 (693)
                      ..+..+..++++++|++||+++|.++ .+|  .++.+++|++|++++|++++. +   +..+++|++|++++|.++
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~   98 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLT   98 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS
T ss_pred             cCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCc
Confidence            34444556777788888888888887 555  377788888888888877642 2   666777777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-34  Score=318.62  Aligned_cols=334  Identities=22%  Similarity=0.203  Sum_probs=202.9

Q ss_pred             CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEe
Q 037315          218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLY  297 (693)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  297 (693)
                      ++++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34444444444444 44444443444444444444444444444444444455555544444444444444444555555


Q ss_pred             ccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccc
Q 037315          298 LNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQ  377 (693)
Q Consensus       298 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~  377 (693)
                      +++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..  ...+++|+.+++++|.+.+ 
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-
Confidence            5555444333333444445555555555444444444444555555555555444321  1123445555555554432 


Q ss_pred             cCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315          378 LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN  457 (693)
Q Consensus       378 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  457 (693)
                           +...++|+.|++++|.+....+. +  .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..|..
T Consensus       207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence                 23345677777777777643222 2  3578888888888774  356777888888888888887777766654


Q ss_pred             CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC
Q 037315          458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR  537 (693)
Q Consensus       458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  537 (693)
                                                                           +++|+.|+|++|.+++ +|..+..+++
T Consensus       277 -----------------------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~  302 (597)
T 3oja_B          277 -----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPT  302 (597)
T ss_dssp             -----------------------------------------------------CSSCCEEECTTSCCCE-EECSSSCCTT
T ss_pred             -----------------------------------------------------ccCCCEEECCCCCCCC-CCcccccCCC
Confidence                                                                 4478888888888875 4566677889


Q ss_pred             CCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccC
Q 037315          538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEG  617 (693)
Q Consensus       538 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~  617 (693)
                      |++|+|++|.++++ |..+..+++|+.|+|++|++.+..   +..+++|+.|++++|++.|....  ..+..+....+.+
T Consensus       303 L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~  376 (597)
T 3oja_B          303 LKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDD  376 (597)
T ss_dssp             CCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCC
T ss_pred             CcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhcccc
Confidence            99999999998854 667788899999999999987553   56778999999999999886433  3455666667888


Q ss_pred             ccCCCCCC
Q 037315          618 NTFLCGLP  625 (693)
Q Consensus       618 n~~~c~~~  625 (693)
                      ++..|+.+
T Consensus       377 ~~~~C~~~  384 (597)
T 3oja_B          377 ADQHCKID  384 (597)
T ss_dssp             CCCCCCTT
T ss_pred             ccccCCcc
Confidence            88888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.6e-33  Score=294.91  Aligned_cols=334  Identities=23%  Similarity=0.266  Sum_probs=245.3

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcE
Q 037315          168 HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF  247 (693)
Q Consensus       168 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  247 (693)
                      +++++.|+++++.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            467788888888877 677766666788888888888888777778888888888888888887 455454456788888


Q ss_pred             EEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcc
Q 037315          248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL  327 (693)
Q Consensus       248 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  327 (693)
                      |++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+++++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            88888888776655667778888888888877766666777777888888887777643   244566667777776665


Q ss_pred             ccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh
Q 037315          328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI  407 (693)
Q Consensus       328 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  407 (693)
                      .+     +...++|+.|++++|.+.                       .. +.   ...++|+.|++++|.+++.  .++
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~-----------------------~~-~~---~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSIN-----------------------VV-RG---PVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCC-----------------------EE-EC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred             cc-----cCCCCcceEEECCCCeee-----------------------ec-cc---cccccccEEECCCCCCccc--HHH
Confidence            43     223345666666666554                       22 21   2247899999999998854  578


Q ss_pred             hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcc
Q 037315          408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHV  487 (693)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (693)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++..+ .+..                              
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~------------------------------  293 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQP------------------------------  293 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSC------------------------------
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccCC------------------------------
Confidence            889999999999999998888889999999999999998876432 2211                              


Q ss_pred             cccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeC
Q 037315          488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL  567 (693)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  567 (693)
                                             +++|++|++++|++. .+|..+..+++|++|++++|.++.+.   +..+++|+.|++
T Consensus       294 -----------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l  346 (390)
T 3o6n_A          294 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  346 (390)
T ss_dssp             -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             -----------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEc
Confidence                                   568999999999998 56777889999999999999998773   777899999999


Q ss_pred             CCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315          568 SYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI  600 (693)
Q Consensus       568 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  600 (693)
                      ++|++.+.....  -+..+....+..++..|..
T Consensus       347 ~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          347 SHNDWDCNSLRA--LFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CSSCEEHHHHHH--HTTTCCTTTBCCCCSCCCT
T ss_pred             CCCCccchhHHH--HHHHHHhhcccccCceecc
Confidence            999998643222  2233333344555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.4e-33  Score=285.80  Aligned_cols=304  Identities=23%  Similarity=0.326  Sum_probs=221.5

Q ss_pred             CCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315          193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL  272 (693)
Q Consensus       193 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  272 (693)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            5788888888888764 33 4777888888888888887 5555  44688888888888887764  357778888888


Q ss_pred             eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315          273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      ++++|.+.+. +. +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            8888887743 32 677788888888887554333 336777777777777777765433  667777777777777665


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315          353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC  432 (693)
Q Consensus       353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  432 (693)
                      +.                        +  .+..+++|+.+++++|.+.+..+  +..+++|++|++++|++++..+  +.
T Consensus       191 ~~------------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 DI------------------------S--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             cc------------------------c--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            22                        1  25667788888888888775433  7778888888888888875433  77


Q ss_pred             CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315          433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS  512 (693)
Q Consensus       433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  512 (693)
                      .+++|++|++++|.+++.  +.+..                                                     ++
T Consensus       241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~  265 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT  265 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred             cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence            788888888888877653  12221                                                     55


Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +|++|++++|++.+.  ..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..|  +..+++|++|+++
T Consensus       266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            788888888888754  457788888888888888888878888888888888888888886655  7788888888888


Q ss_pred             CCcCc
Q 037315          593 YNNLS  597 (693)
Q Consensus       593 ~N~l~  597 (693)
                      +|+++
T Consensus       342 ~N~i~  346 (347)
T 4fmz_A          342 NQVIK  346 (347)
T ss_dssp             CC---
T ss_pred             hhccc
Confidence            88875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.8e-34  Score=287.87  Aligned_cols=260  Identities=35%  Similarity=0.573  Sum_probs=221.1

Q ss_pred             CCCCEEeccCCcccc--cCCccccCCCCCcEEEccC-CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEE
Q 037315          291 SSLEGLYLNNNSLSG--KIPRWLGNLTWLIHIIMPK-NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQV  367 (693)
Q Consensus       291 ~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  367 (693)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+..|..|..+++|++|++++|.+.+              
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence            356677777777766  5666777777777777774 67776777777777777777777777653              


Q ss_pred             EccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCC-CCCEEEccCCc
Q 037315          368 HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLN-QLQLLDLSNNN  446 (693)
Q Consensus       368 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~  446 (693)
                               .++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..++ +|++|++++|+
T Consensus       116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                     3333 677788899999999998888888899999999999999999988898899888 99999999999


Q ss_pred             CcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc
Q 037315          447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG  526 (693)
Q Consensus       447 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  526 (693)
                      +.+..|..+..                                                     +. |++|++++|++.+
T Consensus       186 l~~~~~~~~~~-----------------------------------------------------l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          186 LTGKIPPTFAN-----------------------------------------------------LN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGG-----------------------------------------------------CC-CSEEECCSSEEEE
T ss_pred             eeccCChHHhC-----------------------------------------------------Cc-ccEEECcCCcccC
Confidence            98888877654                                                     33 8999999999999


Q ss_pred             cCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccc
Q 037315          527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQ  606 (693)
Q Consensus       527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  606 (693)
                      ..|..|..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            9999999999999999999999977665 888999999999999999999999999999999999999999999997 88


Q ss_pred             cCcCCcccccCccCCCCCCCCCCC
Q 037315          607 FATFNENSYEGNTFLCGLPLPICR  630 (693)
Q Consensus       607 ~~~l~~~~~~~n~~~c~~~~~~c~  630 (693)
                      ++++..+++.+||++|+.|...|.
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccChHHhcCCCCccCCCCCCCC
Confidence            999999999999999998877773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-32  Score=283.01  Aligned_cols=305  Identities=26%  Similarity=0.361  Sum_probs=215.1

Q ss_pred             CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCc
Q 037315          167 SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLE  246 (693)
Q Consensus       167 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  246 (693)
                      .+++|++|+++++.+. .++. +. .+++|++|++++|.+++..+  +.++++|++|++++|.+. .++.  +..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence            3455555555555554 3332 22 25666666666666653322  666666666666666665 4432  33566777


Q ss_pred             EEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCc
Q 037315          247 FLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH  326 (693)
Q Consensus       247 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  326 (693)
                      +|++++|.+.+..+  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            77777776665433  566777777777777554333 336777777778887777764433  6777888888888887


Q ss_pred             cccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchh
Q 037315          327 LEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW  406 (693)
Q Consensus       327 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  406 (693)
                      +.+..+  +..+++|+.+++++|.+.+..                          .+..+++|++|++++|.+++..+  
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDIT--------------------------PVANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCG--------------------------GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cccccc--ccCCCccceeecccCCCCCCc--------------------------hhhcCCcCCEEEccCCccCCCcc--
Confidence            775433  777888888888888776321                          25667888888888888875433  


Q ss_pred             hhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCc
Q 037315          407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH  486 (693)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (693)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|++.+.  ..+..                             
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------  285 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN-----------------------------  285 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG-----------------------------
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC-----------------------------
Confidence            78888889999988888853  4688889999999999988764  12222                             


Q ss_pred             ccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEe
Q 037315          487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD  566 (693)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  566 (693)
                                              +++|++|++++|++.+..+..+..+++|++|++++|.+++..|  +..+++|++|+
T Consensus       286 ------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          286 ------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             ------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             ------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence                                    5689999999999998888999999999999999999998866  88899999999


Q ss_pred             CCCcccc
Q 037315          567 LSYNKLN  573 (693)
Q Consensus       567 Ls~N~l~  573 (693)
                      +++|+++
T Consensus       340 l~~N~i~  346 (347)
T 4fmz_A          340 FANQVIK  346 (347)
T ss_dssp             SSCC---
T ss_pred             hhhhccc
Confidence            9999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.7e-32  Score=300.18  Aligned_cols=311  Identities=23%  Similarity=0.268  Sum_probs=242.9

Q ss_pred             CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcE
Q 037315          168 HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF  247 (693)
Q Consensus       168 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  247 (693)
                      +++++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|..+++|++|++++|.+. .++...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            467788888888887 677776666888888888888888877778888888888888888887 555555556888888


Q ss_pred             EEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcc
Q 037315          248 LALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL  327 (693)
Q Consensus       248 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  327 (693)
                      |++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.   .++.+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            88888888877666677888888888888888877777788888888888888877653   244566777777777766


Q ss_pred             ccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh
Q 037315          328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI  407 (693)
Q Consensus       328 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  407 (693)
                      .+     +...++|+.|++++|.+...                       .+    ...++|+.|++++|.+++  +.++
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~-----------------------~~----~~~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVV-----------------------RG----PVNVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEE-----------------------EC----SCCSCCCEEECCSSCCCC--CGGG
T ss_pred             cc-----ccCCchhheeeccCCccccc-----------------------cc----ccCCCCCEEECCCCCCCC--Chhh
Confidence            53     23345667777776665421                       11    112688999999998885  3678


Q ss_pred             hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcc
Q 037315          408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHV  487 (693)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (693)
                      ..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+ .+..                              
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~------------------------------  299 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQP------------------------------  299 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSC------------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-cccc------------------------------
Confidence            889999999999999998888899999999999999999876432 2221                              


Q ss_pred             cccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeC
Q 037315          488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL  567 (693)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  567 (693)
                                             +++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++++.   +..+++|+.|++
T Consensus       300 -----------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l  352 (597)
T 3oja_B          300 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  352 (597)
T ss_dssp             -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             -----------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence                                   568999999999998 56778899999999999999998773   677889999999


Q ss_pred             CCcccccc
Q 037315          568 SYNKLNGK  575 (693)
Q Consensus       568 s~N~l~~~  575 (693)
                      ++|++.+.
T Consensus       353 ~~N~~~~~  360 (597)
T 3oja_B          353 SHNDWDCN  360 (597)
T ss_dssp             CSSCEEHH
T ss_pred             eCCCCCCh
Confidence            99999754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=4.8e-31  Score=269.44  Aligned_cols=291  Identities=23%  Similarity=0.308  Sum_probs=195.8

Q ss_pred             CCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315          219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL  298 (693)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  298 (693)
                      +++.++++++.++ .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4566666666665 555433   246666777777666666556666777777777777776666666777777777777


Q ss_pred             cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315          299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL  378 (693)
Q Consensus       299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  378 (693)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+...                     + .
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-~  162 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------G-I  162 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------G-B
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------C-c
Confidence            777766 3343332  5677777777777766666677777777777777766421                     1 1


Q ss_pred             CcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccC
Q 037315          379 KGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNT  458 (693)
Q Consensus       379 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  458 (693)
                      ....+..+++|++|++++|.++. +|..+.  ++|++|++++|++++..+..+..+++|++|++++|++.+..+..+.. 
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-  238 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-  238 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-
T ss_pred             ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-
Confidence            11256667777777777777763 343332  67777888887777776777777788888888888777666655544 


Q ss_pred             ccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCC
Q 037315          459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRI  538 (693)
Q Consensus       459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  538 (693)
                                                                          +++|++|++++|+++ .+|..+..+++|
T Consensus       239 ----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          239 ----------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             ----------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             ----------------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCc
Confidence                                                                446778888888777 566677788888


Q ss_pred             CeeeCCCccCCccCcccccCC------CCCCEEeCCCccccc--cCCcccccCCCCCEEecCCCc
Q 037315          539 QTLNLSHNNLTGLIPSTFSNL------KQIESLDLSYNKLNG--KIPHQLVELKELAVFSVAYNN  595 (693)
Q Consensus       539 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~  595 (693)
                      ++|++++|+++++.+..|...      ++|+.|++++|++..  ..|..|..+++++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            888888888887777666543      677888888888763  556677778888888888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.4e-31  Score=271.80  Aligned_cols=290  Identities=22%  Similarity=0.293  Sum_probs=194.1

Q ss_pred             CCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEec
Q 037315          219 LLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYL  298 (693)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  298 (693)
                      +++.++++++.++ .+|..+   .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666666 566544   356777777777777666666777777777777777777666666777777777777


Q ss_pred             cCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 037315          299 NNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQL  378 (693)
Q Consensus       299 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  378 (693)
                      ++|.++ .+|..+.  ++|++|++++|.+....+..|..+++|+.|++++|.+...                     + .
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-~  164 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------G-F  164 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------G-S
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------C-C
Confidence            777766 3343333  6677777777777666555677777777777777766421                     0 1


Q ss_pred             CcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccC
Q 037315          379 KGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNT  458 (693)
Q Consensus       379 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  458 (693)
                      ....+..+ +|+.|++++|.+++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+.. 
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-  239 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-  239 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence            11134444 66677777776664 333332  56777777777777666667777777777777777777666655544 


Q ss_pred             ccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCC
Q 037315          459 KLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRI  538 (693)
Q Consensus       459 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  538 (693)
                                                                          +++|++|++++|+++ .+|..+..+++|
T Consensus       240 ----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          240 ----------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             ----------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccC
Confidence                                                                446777778777777 566677788888


Q ss_pred             CeeeCCCccCCccCcccccCC------CCCCEEeCCCcccc--ccCCcccccCCCCCEEecCCCc
Q 037315          539 QTLNLSHNNLTGLIPSTFSNL------KQIESLDLSYNKLN--GKIPHQLVELKELAVFSVAYNN  595 (693)
Q Consensus       539 ~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~N~  595 (693)
                      ++|++++|+++++.+..|.+.      .+|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888887777666553      56788888888876  5667777888888888888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=9.7e-31  Score=267.31  Aligned_cols=253  Identities=25%  Similarity=0.299  Sum_probs=148.4

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEE
Q 037315          170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA  249 (693)
Q Consensus       170 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  249 (693)
                      +++.++++++.++ .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            5666677666665 5555442   46666666666666555556666666666666666665 33222233455666666


Q ss_pred             ccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCcccc
Q 037315          250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEG  329 (693)
Q Consensus       250 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  329 (693)
                      +++|.+....+. +.  ++|++|++++|.+.+..+..+..+++|+.|++++|.++.                      .+
T Consensus       109 L~~n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~  163 (332)
T 2ft3_A          109 ISKNHLVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG  163 (332)
T ss_dssp             CCSSCCCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred             CCCCcCCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence            666555543222 11  455555555555554333344445555555555554431                      11


Q ss_pred             CccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhC
Q 037315          330 PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDG  409 (693)
Q Consensus       330 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  409 (693)
                      ..+..+..+ +|+.|++++|++.+. |..+ ..+|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+.++..
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTGI-PKDL-PETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSSC-CSSS-CSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CCcccccCC-ccCEEECcCCCCCcc-Cccc-cCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            333444444 555555555555532 2211 13455555555555333332 6777788888888888888777777888


Q ss_pred             CCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315          410 LSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN  457 (693)
Q Consensus       410 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  457 (693)
                      +++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            888888888888887 56666778888888888888887776666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=1.1e-34  Score=311.52  Aligned_cols=280  Identities=21%  Similarity=0.162  Sum_probs=160.9

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccc----cCCccCCCCCCCCEEEcccCccccccchHHhhCCC-
Q 037315          169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDG----SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCV-  243 (693)
Q Consensus       169 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-  243 (693)
                      ++|++|++++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4567777777777643333334456778888888777763    23455667778888888887776444545554455 


Q ss_pred             ---CCcEEEcccccccc----ccCccCCCCCCCCeEeccCccccccCCcCC-----cCCCCCCEEeccCCcccccC----
Q 037315          244 ---NLEFLALSNNSLKG----HMFSRNFNLINLRWLQLEGNHFVGEIPQSL-----SKCSSLEGLYLNNNSLSGKI----  307 (693)
Q Consensus       244 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~~----  307 (693)
                         +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               58888888887774    335666777788888888777764322222     22456788888887776533    


Q ss_pred             CccccCCCCCcEEEccCCccccCcccccc-----CCCCCCEEECcCCcCCCCC----CCCC-CCCcccEEEccCcccccc
Q 037315          308 PRWLGNLTWLIHIIMPKNHLEGPIPVEFC-----HLYSLQILDISDNNISGSL----PSCF-HPLSITQVHLSKNMLHGQ  377 (693)
Q Consensus       308 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~  377 (693)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+.+..    +..+ ..++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            44455667777777777776644333332     2557777777777765421    1111 134444555555444322


Q ss_pred             c----CcccccCCCCCcEEeCcCcccCCC----cchhhhCCCCCCEEEccCCcccccCCcccC-----CCCCCCEEEccC
Q 037315          378 L----KGGTFFNCSSLVTLDLSYNLLNGS----IPDWIDGLSQLSHLILGNNNLEGEVPVQLC-----GLNQLQLLDLSN  444 (693)
Q Consensus       378 ~----~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~  444 (693)
                      .    ....+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            1    111222355566666666655532    344445555666666666655433222221     124555555555


Q ss_pred             CcCc
Q 037315          445 NNLH  448 (693)
Q Consensus       445 n~~~  448 (693)
                      |.++
T Consensus       323 n~l~  326 (461)
T 1z7x_W          323 CSFT  326 (461)
T ss_dssp             SCCB
T ss_pred             CCCc
Confidence            5544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.5e-34  Score=310.58  Aligned_cols=387  Identities=19%  Similarity=0.095  Sum_probs=253.7

Q ss_pred             CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc----CCCCCCCCCCCCEEEccCCcCcccCChhhhhcCC-
Q 037315          120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP----FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILP-  194 (693)
Q Consensus       120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-  194 (693)
                      ++|++|+++++.+.+.....++..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            35677777777776554444457788888888888887643    3345666788888888888887555555665565 


Q ss_pred             ---CCcEEEccCCcccc----cCCccCCCCCCCCEEEcccCccccccchHHhh----CCCCCcEEEcccccccccc----
Q 037315          195 ---RLISFNISMNALDG----SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM----GCVNLEFLALSNNSLKGHM----  259 (693)
Q Consensus       195 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~----  259 (693)
                         +|++|++++|.++.    .++..+.++++|++|++++|.+.+..+..+..    ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999998874    44777888999999999999887443433332    2457888888888887643    


Q ss_pred             CccCCCCCCCCeEeccCccccccCCcCCc-----CCCCCCEEeccCCccccc----CCccccCCCCCcEEEccCCccccC
Q 037315          260 FSRNFNLINLRWLQLEGNHFVGEIPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNLTWLIHIIMPKNHLEGP  330 (693)
Q Consensus       260 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~  330 (693)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            34455667888888888877654333332     245788888888877653    355566677777888877776543


Q ss_pred             c-----cccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcch
Q 037315          331 I-----PVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPD  405 (693)
Q Consensus       331 ~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~  405 (693)
                      .     +..+..+++|++|++++|.+++...                   ..++. .+..+++|++|++++|.+++..+.
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence            2     1222346777777777776652100                   01222 456688899999999988654444


Q ss_pred             hhhC-----CCCCCEEEccCCccccc----CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhH
Q 037315          406 WIDG-----LSQLSHLILGNNNLEGE----VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKI  476 (693)
Q Consensus       406 ~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  476 (693)
                      .+..     .++|++|++++|.+++.    .+..+..+++|++|++++|++.+..+..+...-                 
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----------------  365 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL-----------------  365 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH-----------------
Confidence            4432     36899999999998865    345566778888888888877643322221100                 


Q ss_pred             hhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc----cCchhhccCCCCCeeeCCCccCCccC
Q 037315          477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG----HIPPQVGNLTRIQTLNLSHNNLTGLI  552 (693)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~  552 (693)
                                                     ....++|++|++++|++++    .+|..+..+++|++|++++|++++..
T Consensus       366 -------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          366 -------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             -------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             -------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence                                           0003467777888777775    56666777777777777777776542


Q ss_pred             ccccc-----CCCCCCEEeCCCccccc
Q 037315          553 PSTFS-----NLKQIESLDLSYNKLNG  574 (693)
Q Consensus       553 ~~~~~-----~l~~L~~L~Ls~N~l~~  574 (693)
                      ...+.     ...+|+.|++.++....
T Consensus       415 ~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          415 ILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHhccCCcchhheeecccccCH
Confidence            21111     23356666666665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=8.5e-32  Score=271.97  Aligned_cols=252  Identities=30%  Similarity=0.462  Sum_probs=167.2

Q ss_pred             CCCCeEeccCccccc--cCCcCCcCCCCCCEEeccC-CcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCE
Q 037315          267 INLRWLQLEGNHFVG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQI  343 (693)
Q Consensus       267 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  343 (693)
                      .++++|++++|.+.+  .+|..+..+++|++|++++ |.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            345566666666655  5555566666666666663 5665556666666666666666666666556666666666666


Q ss_pred             EECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCC-CCCEEEccCCc
Q 037315          344 LDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLS-QLSHLILGNNN  422 (693)
Q Consensus       344 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~  422 (693)
                      |++++|.+.+..|.                        .+..+++|++|++++|.+++.+|..+..++ +|++|++++|+
T Consensus       130 L~Ls~N~l~~~~p~------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          130 LDFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             EeCCCCccCCcCCh------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            66666666533222                        445556666666666666655666666665 66666666666


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccc
Q 037315          423 LEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI  502 (693)
Q Consensus       423 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (693)
                      +++..|..+..++ |++|++++|++.+..|..|..                                             
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------  219 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------------------------------  219 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT---------------------------------------------
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc---------------------------------------------
Confidence            6666666666665 677777777666655555543                                             


Q ss_pred             eeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCccccc
Q 037315          503 AYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVE  582 (693)
Q Consensus       503 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  582 (693)
                              +++|++|++++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus       220 --------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          220 --------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             --------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             --------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence                    34677777777777655444 677788888888888888777888888888888888888888777776 77


Q ss_pred             CCCCCEEecCCCcCcc
Q 037315          583 LKELAVFSVAYNNLSG  598 (693)
Q Consensus       583 l~~L~~L~l~~N~l~~  598 (693)
                      +++|+.+++++|+..+
T Consensus       290 l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGGSCGGGTCSSSEEE
T ss_pred             ccccChHHhcCCCCcc
Confidence            7888888888887444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.5e-30  Score=262.26  Aligned_cols=253  Identities=26%  Similarity=0.354  Sum_probs=148.8

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEE
Q 037315          169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL  248 (693)
Q Consensus       169 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  248 (693)
                      .+++.++++++.++ .+|..+.   +.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..+ ..+++|++|
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred             CCCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence            36777777777766 5555432   466677777776665555566666666666666666652223332 345555566


Q ss_pred             EccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccc
Q 037315          249 ALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE  328 (693)
Q Consensus       249 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  328 (693)
                      ++++|.++..                         |..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus       106 ~Ls~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          106 YLSKNQLKEL-------------------------PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             ECCSSCCSBC-------------------------CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCcc-------------------------Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            5555555532                         22221  34444555554444444444445555555555555443


Q ss_pred             c--CccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchh
Q 037315          329 G--PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW  406 (693)
Q Consensus       329 ~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  406 (693)
                      .  ..+..+..+++|+.|++++|.+... +... .++|+.|++++|++.+..+. .+..+++|++|++++|.+++..+..
T Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          159 SSGIENGAFQGMKKLSYIRIADTNITTI-PQGL-PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC-CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccCcChhhccCCCCcCEEECCCCccccC-Cccc-cccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhh
Confidence            2  3344555666666666666665532 2211 14455555555555443333 6677777777888777777666667


Q ss_pred             hhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315          407 IDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN  457 (693)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  457 (693)
                      +..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            777777778888777777 56666777777777777777777766666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=5.6e-29  Score=264.55  Aligned_cols=252  Identities=22%  Similarity=0.249  Sum_probs=205.4

Q ss_pred             CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECc
Q 037315          268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS  347 (693)
Q Consensus       268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  347 (693)
                      ..+.++.++..++ .+|..+.  ++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567787777777 5565554  578888888888887777888888888888888888887777788888888888888


Q ss_pred             CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCC-ccccc
Q 037315          348 DNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN-NLEGE  426 (693)
Q Consensus       348 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~  426 (693)
                      +|++.+                        ++...|..+++|++|++++|.+....+..|..+++|++|++++| .+...
T Consensus       121 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence            887763                        23336778899999999999998777778889999999999984 45545


Q ss_pred             CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315          427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF  506 (693)
Q Consensus       427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (693)
                      .+..|.++++|++|++++|.++....  +..                                                 
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~-------------------------------------------------  205 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLREIPN--LTP-------------------------------------------------  205 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSSCCC--CTT-------------------------------------------------
T ss_pred             CcchhhcccccCeecCCCCcCccccc--cCC-------------------------------------------------
Confidence            55678889999999999998875421  222                                                 


Q ss_pred             ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCC
Q 037315          507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKEL  586 (693)
Q Consensus       507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  586 (693)
                          +++|++|+|++|++++..|..|..+++|++|++++|+++++.+..|.++++|++|+|++|++++..+..+..+++|
T Consensus       206 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          206 ----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             ----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                5578999999999998888889999999999999999998888889999999999999999998888888888999


Q ss_pred             CEEecCCCcCcccCC
Q 037315          587 AVFSVAYNNLSGEIP  601 (693)
Q Consensus       587 ~~L~l~~N~l~~~~p  601 (693)
                      +.|++++|++.|.+.
T Consensus       282 ~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          282 ERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CEEECCSSCEECSST
T ss_pred             CEEEcCCCCccCCCC
Confidence            999999999887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=8.5e-29  Score=264.09  Aligned_cols=252  Identities=21%  Similarity=0.213  Sum_probs=204.1

Q ss_pred             CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECc
Q 037315          268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS  347 (693)
Q Consensus       268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  347 (693)
                      ..+.++.++..++ .+|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3566777777776 4555443  578888888888887777778888888888888888877777777888888888888


Q ss_pred             CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCC-ccccc
Q 037315          348 DNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN-NLEGE  426 (693)
Q Consensus       348 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~  426 (693)
                      +|++.+                        ++...|..+++|++|++++|.+....+..|.++++|++|++++| .+...
T Consensus       132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence            887762                        33336778899999999999998777778899999999999984 55555


Q ss_pred             CCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315          427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF  506 (693)
Q Consensus       427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (693)
                      .+..|.++++|++|++++|++.+..  .+..                                                 
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-------------------------------------------------  216 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDMP--NLTP-------------------------------------------------  216 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSCC--CCTT-------------------------------------------------
T ss_pred             ChhhccCCCCCCEEECCCCcccccc--cccc-------------------------------------------------
Confidence            5567889999999999999887642  1222                                                 


Q ss_pred             ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCC
Q 037315          507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKEL  586 (693)
Q Consensus       507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  586 (693)
                          +++|++|++++|++.+..|..|..+++|++|++++|+++++.+..|.++++|+.|+|++|++++..+..+..+++|
T Consensus       217 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          217 ----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             ----CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ----cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence                5689999999999998888999999999999999999999888899999999999999999998888888889999


Q ss_pred             CEEecCCCcCcccCC
Q 037315          587 AVFSVAYNNLSGEIP  601 (693)
Q Consensus       587 ~~L~l~~N~l~~~~p  601 (693)
                      +.|++++|++.|.+.
T Consensus       293 ~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          293 VELHLHHNPWNCDCD  307 (452)
T ss_dssp             CEEECCSSCEECSTT
T ss_pred             CEEEccCCCcCCCCC
Confidence            999999999988665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=7.9e-29  Score=250.22  Aligned_cols=250  Identities=24%  Similarity=0.296  Sum_probs=171.6

Q ss_pred             eEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccC--ccccccCCCCCCEEECcC
Q 037315          271 WLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGP--IPVEFCHLYSLQILDISD  348 (693)
Q Consensus       271 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~  348 (693)
                      .++.+++.++ .+|..+.  +++++|++++|.++...+..+.++++|++|++++|.+...  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4444444444 2333222  3555555555555533333445555555555555555422  133444566666666666


Q ss_pred             CcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcc-hhhhCCCCCCEEEccCCcccccC
Q 037315          349 NNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP-DWIDGLSQLSHLILGNNNLEGEV  427 (693)
Q Consensus       349 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~  427 (693)
                      |.+.                        .++. .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus        88 n~i~------------------------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           88 NGVI------------------------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CSEE------------------------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             Cccc------------------------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            6553                        1222 35566777777777777765444 46777788888888888887777


Q ss_pred             CcccCCCCCCCEEEccCCcCcc-cCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315          428 PVQLCGLNQLQLLDLSNNNLHG-LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF  506 (693)
Q Consensus       428 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (693)
                      +..+..+++|++|++++|.+.+ ..|..+..                                                 
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------------------------------------  173 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------------------------------------------------  173 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------------------------
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhh-------------------------------------------------
Confidence            7777788888888888887765 45555544                                                 


Q ss_pred             ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCC-C
Q 037315          507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK-E  585 (693)
Q Consensus       507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~  585 (693)
                          +++|++|++++|++++..|..+..+++|++|++++|+++++.+..+..+++|++|++++|++.+..|..+..++ +
T Consensus       174 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          174 ----LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             ----CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence                45788888888888877788888888899999999988888777888889999999999999888888888884 8


Q ss_pred             CCEEecCCCcCcccCC
Q 037315          586 LAVFSVAYNNLSGEIP  601 (693)
Q Consensus       586 L~~L~l~~N~l~~~~p  601 (693)
                      |++|++++|+++|.++
T Consensus       250 L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          250 LAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCEEECTTCCEECSGG
T ss_pred             CCEEEccCCCeecccC
Confidence            9999999999887644

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=8.9e-29  Score=249.81  Aligned_cols=254  Identities=24%  Similarity=0.300  Sum_probs=213.6

Q ss_pred             CEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcc
Q 037315          294 EGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNM  373 (693)
Q Consensus       294 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  373 (693)
                      +.++.+++.++ .+|..+.  +++++|++++|.+....+..|..+++|++|++++|.+...                   
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-------------------   67 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK-------------------   67 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence            46777777776 3444332  5778888888887755555577778888888877776521                   


Q ss_pred             cccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCC
Q 037315          374 LHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIP  452 (693)
Q Consensus       374 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~  452 (693)
                        +..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+
T Consensus        68 --~~~~~-~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  143 (306)
T 2z66_A           68 --GCCSQ-SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  143 (306)
T ss_dssp             --EEEEH-HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred             --cCccc-ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence              11122 4557899999999999998 467779999999999999999997655 579999999999999999998887


Q ss_pred             CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc-cCchh
Q 037315          453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG-HIPPQ  531 (693)
Q Consensus       453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~  531 (693)
                      ..+..                                                     +++|++|++++|.+.+ ..|..
T Consensus       144 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~  170 (306)
T 2z66_A          144 GIFNG-----------------------------------------------------LSSLEVLKMAGNSFQENFLPDI  170 (306)
T ss_dssp             TTTTT-----------------------------------------------------CTTCCEEECTTCEEGGGEECSC
T ss_pred             hhccc-----------------------------------------------------CcCCCEEECCCCccccccchhH
Confidence            77755                                                     5589999999999987 67889


Q ss_pred             hccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccC-cC
Q 037315          532 VGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFA-TF  610 (693)
Q Consensus       532 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~l  610 (693)
                      +..+++|++|++++|+++++.|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ .+
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred             HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence            99999999999999999999999999999999999999999988888899999999999999999999998888874 89


Q ss_pred             CcccccCccCCCCCCC
Q 037315          611 NENSYEGNTFLCGLPL  626 (693)
Q Consensus       611 ~~~~~~~n~~~c~~~~  626 (693)
                      ..+++++|++.|+|+.
T Consensus       251 ~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          251 AFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CEEECTTCCEECSGGG
T ss_pred             CEEEccCCCeecccCh
Confidence            9999999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4e-29  Score=257.70  Aligned_cols=208  Identities=25%  Similarity=0.241  Sum_probs=130.3

Q ss_pred             CCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEE
Q 037315          217 MNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGL  296 (693)
Q Consensus       217 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  296 (693)
                      ++.....+.+++.++ .+|..+.   ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            344455666777766 6666542   467777777777776666667777777777777777776666667777777777


Q ss_pred             eccCCcccccCCccccCCCCCcEEEccCCccccCcc-ccccCCCCCCEEECcCCc-CCCCCCCCCCCCcccEEEccCccc
Q 037315          297 YLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP-VEFCHLYSLQILDISDNN-ISGSLPSCFHPLSITQVHLSKNML  374 (693)
Q Consensus       297 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~  374 (693)
                      ++++|.+++..+..++++++|++|++++|.+....+ ..+..+++|++|++++|. +.                      
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----------------------  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----------------------  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence            777777765444446666666666666666664333 345666666666666653 32                      


Q ss_pred             ccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315          375 HGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP  452 (693)
Q Consensus       375 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  452 (693)
                        .++...+..+++|++|++++|.+.+..|..+..+++|++|++++|+++......+..+++|++|++++|.+++..+
T Consensus       164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence              2222255566666667776666666556666666677777777766654333334446666677776666655443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8e-29  Score=255.41  Aligned_cols=280  Identities=19%  Similarity=0.172  Sum_probs=212.5

Q ss_pred             CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEE
Q 037315          242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHII  321 (693)
Q Consensus       242 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  321 (693)
                      |+.....+.+++.++.++ ..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~iP-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIP-SGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSSCC-TTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCccccc-cccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            555666777888777643 3332  5788888888888866666788888888888888888877777788888888888


Q ss_pred             ccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCc-ccccCCCCCcEEeCcCc-cc
Q 037315          322 MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG-GTFFNCSSLVTLDLSYN-LL  399 (693)
Q Consensus       322 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~i  399 (693)
                      +++|.+.+..+..+..+++|++|++++|++.+                        ++. ..+..+++|++|++++| .+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence            88888876655557778888888888887762                        222 36778899999999998 46


Q ss_pred             CCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhh
Q 037315          400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFS  479 (693)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  479 (693)
                      ....+..+.++++|++|++++|++++..|..+..+++|++|++++|++....+..+..                      
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------  220 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV----------------------  220 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH----------------------
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh----------------------
Confidence            6666778889999999999999999888888999999999999999875432221111                      


Q ss_pred             hcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhc---cCCCCCeeeCCCccCCcc----C
Q 037315          480 IKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG---NLTRIQTLNLSHNNLTGL----I  552 (693)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~  552 (693)
                                                     +++|++|++++|++.+..+..+.   ..+.++.++++++.+++.    +
T Consensus       221 -------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          221 -------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             -------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             -------------------------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                                           55799999999998876554433   456778888888877652    4


Q ss_pred             cccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          553 PSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       553 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      |..+..+++|++|++++|+++...+..+..+++|++|++++|++.|.+|
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            6778888999999999999985444446888999999999999988766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.2e-27  Score=253.12  Aligned_cols=248  Identities=26%  Similarity=0.235  Sum_probs=190.0

Q ss_pred             CcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccC
Q 037315          245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK  324 (693)
Q Consensus       245 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  324 (693)
                      ...++.++..++.+ |..+.  +++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~i-P~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEV-PQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCcc-CCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            45677777776653 33332  6788888888888877777888888888888888888877777888888888888888


Q ss_pred             CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCc-ccCCCc
Q 037315          325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN-LLNGSI  403 (693)
Q Consensus       325 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~  403 (693)
                      |.+....+..|..+++|++|++++|++.+                        ++...|..+++|++|++++| .+....
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence            88887776778888888888888887752                        23336777888888888874 444444


Q ss_pred             chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315          404 PDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH  483 (693)
Q Consensus       404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  483 (693)
                      +..|.++++|++|++++|++++. | .+..+++|++|++++|++.+..|..|..                          
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------  240 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG--------------------------  240 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------------------------
Confidence            45678888888888888888743 3 4777888888888888888777766655                          


Q ss_pred             CCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCC
Q 037315          484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE  563 (693)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  563 (693)
                                                 +++|+.|++++|++.+..+..|..+++|++|+|++|+++++++..|..+++|+
T Consensus       241 ---------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          241 ---------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ---------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence                                       44788888888888888888888888888888888888888777888888888


Q ss_pred             EEeCCCccccc
Q 037315          564 SLDLSYNKLNG  574 (693)
Q Consensus       564 ~L~Ls~N~l~~  574 (693)
                      .|+|++|++..
T Consensus       294 ~L~L~~Np~~C  304 (452)
T 3zyi_A          294 ELHLHHNPWNC  304 (452)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEccCCCcCC
Confidence            88888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.3e-27  Score=252.07  Aligned_cols=247  Identities=28%  Similarity=0.250  Sum_probs=160.7

Q ss_pred             CcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccC
Q 037315          245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK  324 (693)
Q Consensus       245 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  324 (693)
                      .+.++.++..+..++ ..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVP-DGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCC-SCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCC-CCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            445666666665532 3222  5667777777777666666677777777777777777666666677777777777777


Q ss_pred             CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCc-ccCCCc
Q 037315          325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYN-LLNGSI  403 (693)
Q Consensus       325 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~  403 (693)
                      |.+....+..|..+++|++|++++|.+..                        ++...|..+++|++|++++| .+....
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            77766555566667777777777666642                        22225566677777777763 333333


Q ss_pred             chhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhccc
Q 037315          404 PDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGH  483 (693)
Q Consensus       404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  483 (693)
                      +..|.++++|++|++++|.++. +| .+..+++|++|++++|++++..|..|..                          
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------  229 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG--------------------------  229 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------
T ss_pred             cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------
Confidence            4456667777777777777763 33 3666677777777777776666666554                          


Q ss_pred             CCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCC
Q 037315          484 QGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIE  563 (693)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  563 (693)
                                                 +++|+.|++++|++.+..+..|..+++|++|+|++|+++++.+..|..+++|+
T Consensus       230 ---------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          230 ---------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             ---------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             ---------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence                                       34677777777777766666677777777777777777766666677777777


Q ss_pred             EEeCCCcccc
Q 037315          564 SLDLSYNKLN  573 (693)
Q Consensus       564 ~L~Ls~N~l~  573 (693)
                      .|+|++|++.
T Consensus       283 ~L~L~~Np~~  292 (440)
T 3zyj_A          283 RIHLHHNPWN  292 (440)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEcCCCCcc
Confidence            7777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.2e-30  Score=289.53  Aligned_cols=202  Identities=11%  Similarity=0.036  Sum_probs=92.3

Q ss_pred             cCCCCCEEEccCCcccccCCCCCCC-CC-CCCEEEccCCc-CcccCChhhhhcCCCCcEEEccCCcccccC----CccCC
Q 037315          143 NNTKLRQLSLVNDSLAGPFRLPIHS-HR-HLRLLDVSNNN-FQGHIPVEIGDILPRLISFNISMNALDGSI----PSSFG  215 (693)
Q Consensus       143 ~~~~L~~L~l~~~~~~~~~~~~l~~-~~-~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~  215 (693)
                      .+++|++|++++|.+++.....+.. ++ +|++|++++|. ++......+...+++|++|++++|.+++..    +..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4555666666655554433322322 22 25566665554 111111112223555666666655544331    11233


Q ss_pred             CCCCCCEEEcccCcccc----ccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCcccc---ccCCcCCc
Q 037315          216 NMNLLQILDLSNNQLTG----EIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFV---GEIPQSLS  288 (693)
Q Consensus       216 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~  288 (693)
                      .+++|++|++++|.+.+    .++. ++..+++|++|++++|.+.+ .+..+..+++|++|++++....   ...+..+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            45555666665555541    1111 12235556666665555554 2344455555555555532211   11223344


Q ss_pred             CCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCcc-ccccCCCCCCEEECc
Q 037315          289 KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP-VEFCHLYSLQILDIS  347 (693)
Q Consensus       289 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~  347 (693)
                      .+++|+.|+++++... .++..+..+++|++|++++|.+.+... ..+..+++|+.|+++
T Consensus       268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            4555555555554222 344445555555555555555432221 223455555555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.1e-30  Score=286.14  Aligned_cols=412  Identities=12%  Similarity=0.062  Sum_probs=290.8

Q ss_pred             chhhhhcCCCCCEEEccCCccc---ccCCCCC------------CCCCCCCEEEccCCcCcccCChhhhhcCCC-CcEEE
Q 037315          137 PNWLLENNTKLRQLSLVNDSLA---GPFRLPI------------HSHRHLRLLDVSNNNFQGHIPVEIGDILPR-LISFN  200 (693)
Q Consensus       137 ~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l------------~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~  200 (693)
                      +..+++.+++|++|+++++...   +..+...            ..+++|++|++++|.+++..+..+...+++ |++|+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            3444566777777777665321   1111111            267899999999999886666666664555 99999


Q ss_pred             ccCCc-ccc-cCCccCCCCCCCCEEEcccCccccccc---hHHhhCCCCCcEEEcccccccc----ccCccCCCCCCCCe
Q 037315          201 ISMNA-LDG-SIPSSFGNMNLLQILDLSNNQLTGEIP---EHLAMGCVNLEFLALSNNSLKG----HMFSRNFNLINLRW  271 (693)
Q Consensus       201 L~~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~  271 (693)
                      +++|. +.. ..+....++++|++|++++|.+.+.-.   ..+...+++|++|++++|.+.+    ..+..+..+++|++
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            99986 221 122223478999999999999875422   1234468999999999999873    23344567899999


Q ss_pred             EeccCccccccCCcCCcCCCCCCEEeccCCccc---ccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcC
Q 037315          272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS---GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD  348 (693)
Q Consensus       272 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  348 (693)
                      |++++|.+.+ ++..+..+++|++|+++.+...   ...+..+..+++|+.+.++++.. ...|..+..+++|++|++++
T Consensus       225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred             EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence            9999999885 5677888999999999864332   23445677889999999988643 35677788899999999999


Q ss_pred             CcCCCCCCC--CCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcC-----------cccCCC-cchhhhCCCCCC
Q 037315          349 NNISGSLPS--CFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY-----------NLLNGS-IPDWIDGLSQLS  414 (693)
Q Consensus       349 n~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-----------n~i~~~-~~~~~~~l~~L~  414 (693)
                      |.+.+....  ...+++|+.|+++ +.+........+..+++|++|++++           +.+++. .+.....+++|+
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  381 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE  381 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred             CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence            986543321  2347889999998 4443332222456789999999994           455533 223345689999


Q ss_pred             EEEccCCcccccCCcccCC-CCCCCEEEcc----CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccc
Q 037315          415 HLILGNNNLEGEVPVQLCG-LNQLQLLDLS----NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEK  489 (693)
Q Consensus       415 ~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (693)
                      +|+++.|.+++..+..+.. +++|+.|+++    .|.+++.+.+.                  .+..             
T Consensus       382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~------------------~~~~-------------  430 (592)
T 3ogk_B          382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN------------------GVRS-------------  430 (592)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH------------------HHHH-------------
T ss_pred             EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH------------------HHHH-------------
Confidence            9999999998776666665 8999999997    34444321110                  0000             


Q ss_pred             cccceeeeecccceeeeccccccCcceEECCCCc--ccccCchhhc-cCCCCCeeeCCCccCCcc-CcccccCCCCCCEE
Q 037315          490 KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK--LIGHIPPQVG-NLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESL  565 (693)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  565 (693)
                                     ..  ..+++|+.|++++|.  +++..+..+. .+++|++|++++|++++. .+..+.++++|++|
T Consensus       431 ---------------~~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          431 ---------------LL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             ---------------HH--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             ---------------HH--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence                           00  116689999998654  6655555554 489999999999999863 34556889999999


Q ss_pred             eCCCcccccc-CCcccccCCCCCEEecCCCcCccc
Q 037315          566 DLSYNKLNGK-IPHQLVELKELAVFSVAYNNLSGE  599 (693)
Q Consensus       566 ~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~  599 (693)
                      +|++|++++. ++.....+++|++|++++|+++..
T Consensus       494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            9999998754 344456789999999999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.7e-27  Score=237.73  Aligned_cols=89  Identities=21%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus       154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            45555555555554444445555555566666665555555555556666666666666655444555556666666666


Q ss_pred             CCcCcccCC
Q 037315          593 YNNLSGEIP  601 (693)
Q Consensus       593 ~N~l~~~~p  601 (693)
                      +|++.+.++
T Consensus       234 ~N~~~c~~~  242 (285)
T 1ozn_A          234 DNPWVCDCR  242 (285)
T ss_dssp             SSCEECSGG
T ss_pred             CCCccCCCC
Confidence            666655443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.8e-27  Score=237.44  Aligned_cols=211  Identities=25%  Similarity=0.316  Sum_probs=186.1

Q ss_pred             CcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCc-ccccCCcccCCCCCCCEE
Q 037315          362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNN-LEGEVPVQLCGLNQLQLL  440 (693)
Q Consensus       362 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  440 (693)
                      ++++.|++++|.+.+ ++...|..+++|++|++++|.+++..+..|.++++|++|++++|+ ++...+..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            345555555555533 333378889999999999999998888899999999999999997 887778889999999999


Q ss_pred             EccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECC
Q 037315          441 DLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLS  520 (693)
Q Consensus       441 ~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  520 (693)
                      ++++|++.+..+..|..                                                     +++|++|+++
T Consensus       111 ~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~l~  137 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRG-----------------------------------------------------LAALQYLYLQ  137 (285)
T ss_dssp             ECTTSCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECC
T ss_pred             ECCCCcCCEECHhHhhC-----------------------------------------------------CcCCCEEECC
Confidence            99999999888877765                                                     5589999999


Q ss_pred             CCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315          521 CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI  600 (693)
Q Consensus       521 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  600 (693)
                      +|++.+..+..|..+++|++|++++|+++++.+..|.++++|++|++++|++++..|..+..+++|+.|++++|++++..
T Consensus       138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            99999887788999999999999999999998888999999999999999999999999999999999999999999877


Q ss_pred             CCCccccCcCCcccccCccCCCCCCC
Q 037315          601 PEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       601 p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      +..+..++++..+++++||+.|+|+.
T Consensus       218 ~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             HHHcccCcccCEEeccCCCccCCCCc
Confidence            77778889999999999999999975

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.1e-26  Score=233.82  Aligned_cols=170  Identities=22%  Similarity=0.306  Sum_probs=92.0

Q ss_pred             CCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEEC
Q 037315          267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI  346 (693)
Q Consensus       267 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  346 (693)
                      +++++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34444444444444 33444444555555555555554 44444555555555555555554 34555556666666666


Q ss_pred             cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccccc
Q 037315          347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE  426 (693)
Q Consensus       347 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  426 (693)
                      ++|++.+.+|..+..     .         ... +.+.++++|++|++++|.++ .+|..+..+++|++|++++|++++ 
T Consensus       158 ~~n~~~~~~p~~~~~-----~---------~~~-~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS-----T---------DAS-GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEETTCCCCCSCSEE-----E---------C-C-CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCccccChhHhh-----c---------cch-hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            665555444432210     0         000 13455677777777777776 556667777777777777777663 


Q ss_pred             CCcccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315          427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFD  456 (693)
Q Consensus       427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  456 (693)
                      +|..+..+++|++|++++|++.+..|..+.
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence            444566666666666666665555544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-28  Score=248.58  Aligned_cols=152  Identities=18%  Similarity=0.147  Sum_probs=103.2

Q ss_pred             CCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCccc-CCCCCCCEEEccCCcCcccCCCCcccCcccccc
Q 037315          386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQL-CGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESY  464 (693)
Q Consensus       386 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~  464 (693)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..+         
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------  189 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---------  189 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---------
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc---------
Confidence            4567777777777776666667777777777777777776555555 356777777777777665422111         


Q ss_pred             CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCC
Q 037315          465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS  544 (693)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  544 (693)
                                                                    +++|++|++++|++++..+ .+..+++|++|+++
T Consensus       190 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~  222 (317)
T 3o53_A          190 ----------------------------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLR  222 (317)
T ss_dssp             ----------------------------------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECT
T ss_pred             ----------------------------------------------cccCCEEECCCCcCCcchh-hhcccCcccEEECc
Confidence                                                          4467777777777775433 47777777777777


Q ss_pred             CccCCccCcccccCCCCCCEEeCCCcccc-ccCCcccccCCCCCEEecCCC
Q 037315          545 HNNLTGLIPSTFSNLKQIESLDLSYNKLN-GKIPHQLVELKELAVFSVAYN  594 (693)
Q Consensus       545 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~N  594 (693)
                      +|+++++ |..+..+++|+.|++++|++. +.+|..+..+++|+.+++++|
T Consensus       223 ~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          223 NNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCcccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            7777754 556777777777777777776 566666777777777777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1e-28  Score=250.20  Aligned_cols=246  Identities=21%  Similarity=0.201  Sum_probs=186.0

Q ss_pred             cCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEE
Q 037315          288 SKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQV  367 (693)
Q Consensus       288 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  367 (693)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+  +..+++|++|++++|++.               
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~---------------   93 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ---------------   93 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE---------------
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc---------------
Confidence            344456666666666655555555666666666666666554333  566666666666666654               


Q ss_pred             EccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 037315          368 HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNL  447 (693)
Q Consensus       368 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  447 (693)
                                    .+...++|++|++++|.+++..+.   .+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus        94 --------------~l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           94 --------------ELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             --------------EEEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             --------------cccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence                          122337899999999998865443   368899999999999988888899999999999999999


Q ss_pred             cccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCccccc
Q 037315          448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH  527 (693)
Q Consensus       448 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  527 (693)
                      .+..+..+..                                                    .+++|++|++++|++++.
T Consensus       157 ~~~~~~~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          157 DTVNFAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             CEEEGGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE
T ss_pred             CcccHHHHhh----------------------------------------------------ccCcCCEEECCCCcCccc
Confidence            8766554421                                                    156899999999999866


Q ss_pred             CchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCc-ccCCCCccc
Q 037315          528 IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLS-GEIPEWKAQ  606 (693)
Q Consensus       528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~  606 (693)
                       + ....+++|++|++++|+++++++. +..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|.++..
T Consensus       185 -~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  260 (317)
T 3o53_A          185 -K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (317)
T ss_dssp             -E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred             -c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence             2 334589999999999999987554 899999999999999999 46778899999999999999999 577777777


Q ss_pred             cCcCCcccccCccCCCC
Q 037315          607 FATFNENSYEGNTFLCG  623 (693)
Q Consensus       607 ~~~l~~~~~~~n~~~c~  623 (693)
                      ++.+..+.+.+++.+.+
T Consensus       261 ~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          261 NQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CHHHHHHHHHHHHHHHS
T ss_pred             cccceEEECCCchhccC
Confidence            77777777775544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=255.14  Aligned_cols=109  Identities=23%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +|+.|+|++|.+++..  ....+++|+.|+|++|.+++++|. +..+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus       170 ~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          170 TLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             TCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred             cccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence            4444444444444331  122355555555555555554333 5555555555555555553 34445555555566666


Q ss_pred             CCcCc-ccCCCCccccCcCCccccc-------CccCCCCCC
Q 037315          593 YNNLS-GEIPEWKAQFATFNENSYE-------GNTFLCGLP  625 (693)
Q Consensus       593 ~N~l~-~~~p~~~~~~~~l~~~~~~-------~n~~~c~~~  625 (693)
                      +|++. +.+|.++..+..+..+.+.       ++++.|.|+
T Consensus       246 ~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             TCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            66555 2334444344444333333       677778764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=7.8e-29  Score=275.07  Aligned_cols=407  Identities=15%  Similarity=0.121  Sum_probs=199.6

Q ss_pred             hcCCCCCCEEEccCccccccCc--------------hhhhhcCCCCCEEEccCCcccccCCCCCC-CCCCCCEEEccCC-
Q 037315          116 LYYQHDLEDVHFSRIQMNGEFP--------------NWLLENNTKLRQLSLVNDSLAGPFRLPIH-SHRHLRLLDVSNN-  179 (693)
Q Consensus       116 l~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n-  179 (693)
                      +..+++|++|+++++.....+.              ..+...+++|++|++++|.+++.....+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            4455666666666654221110              12234566777777777766654443343 4667777777776 


Q ss_pred             cCcccCChhhhhcCCCCcEEEccCCcccccCCccC----CCCCCCCEEEcccCc--cccccchHHhhCCCCCcEEEcccc
Q 037315          180 NFQGHIPVEIGDILPRLISFNISMNALDGSIPSSF----GNMNLLQILDLSNNQ--LTGEIPEHLAMGCVNLEFLALSNN  253 (693)
Q Consensus       180 ~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n  253 (693)
                      .+++.....+...+++|++|++++|.+++..+..+    ..+++|++|++++|.  +.......+...+++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            34322222333346777777777776654333322    255677777777765  221111222234677777777766


Q ss_pred             ccccccCccCCCCCCCCeEeccCcc-------ccccCCcCCcCCCCCCEE-eccCCcccccCCccccCCCCCcEEEccCC
Q 037315          254 SLKGHMFSRNFNLINLRWLQLEGNH-------FVGEIPQSLSKCSSLEGL-YLNNNSLSGKIPRWLGNLTWLIHIIMPKN  325 (693)
Q Consensus       254 ~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  325 (693)
                      ...+..+..+..+++|++|++..+.       +.+ .+..+.++++|+.| .+.+... +.++..+..+++|++|++++|
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence            3222244445566667777654432       221 12234555666665 2332221 122333334555666666655


Q ss_pred             ccccCcc-ccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcC--------
Q 037315          326 HLEGPIP-VEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY--------  396 (693)
Q Consensus       326 ~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~--------  396 (693)
                      .+.+... ..+..+++|+.|++++| +.                       ..........+++|++|++++        
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----------------------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~  355 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IE-----------------------DAGLEVLASTCKDLRELRVFPSEPFVMEP  355 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GH-----------------------HHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cC-----------------------HHHHHHHHHhCCCCCEEEEecCccccccc
Confidence            5432211 11335555555555554 21                       110000222355666665522        


Q ss_pred             -cccCCCcchhh-hCCCCCCEEEccCCcccccCCcccC-CCCCCCEEEcc--C----CcCcccCCCCcccCccccccCCC
Q 037315          397 -NLLNGSIPDWI-DGLSQLSHLILGNNNLEGEVPVQLC-GLNQLQLLDLS--N----NNLHGLIPPCFDNTKLHESYNNS  467 (693)
Q Consensus       397 -n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~~~~~~~~~~l~~~~~~~  467 (693)
                       +.+++.....+ .++++|++|.+..|.+++.....+. .+++|+.|+++  +    +.++....+              
T Consensus       356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~--------------  421 (594)
T 2p1m_B          356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD--------------  421 (594)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH--------------
T ss_pred             CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh--------------
Confidence             23332222222 2366666666666666544443333 36666666666  2    222211000              


Q ss_pred             CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhcc-CCCCCeeeCCCc
Q 037315          468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGN-LTRIQTLNLSHN  546 (693)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n  546 (693)
                          ..+...                              ...+++|+.|++++ .+++..+..+.. +++|++|+|++|
T Consensus       422 ----~~~~~l------------------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~  466 (594)
T 2p1m_B          422 ----IGFGAI------------------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA  466 (594)
T ss_dssp             ----HHHHHH------------------------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             ----hHHHHH------------------------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence                000000                              01144566666655 454444444443 666666766666


Q ss_pred             cCCccCcccc-cCCCCCCEEeCCCccccccCCc-ccccCCCCCEEecCCCcCc
Q 037315          547 NLTGLIPSTF-SNLKQIESLDLSYNKLNGKIPH-QLVELKELAVFSVAYNNLS  597 (693)
Q Consensus       547 ~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~l~~N~l~  597 (693)
                      .+++..+..+ .++++|++|+|++|++++.... ....+++|+.|++++|+++
T Consensus       467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            6654433333 4566667777776666433322 2334566677777766664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.4e-25  Score=227.60  Aligned_cols=234  Identities=18%  Similarity=0.176  Sum_probs=137.4

Q ss_pred             CCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEE
Q 037315          169 RHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL  248 (693)
Q Consensus       169 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  248 (693)
                      ++++.|++++|.++ .+|..++. +++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+. .+++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence            45666666666665 56665555 566666666666666 55666666666666666666666 5665543 36666666


Q ss_pred             EccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccc
Q 037315          249 ALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE  328 (693)
Q Consensus       249 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  328 (693)
                      ++++|.+.+..|..+...               ..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.
T Consensus       156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            666665555444443320               01112334566666666666665 45555666666666666666665


Q ss_pred             cCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhh
Q 037315          329 GPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID  408 (693)
Q Consensus       329 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  408 (693)
                      + +|..+..+++|++|++++|.+.+..|.                        .+..+++|++|++++|.+.+.+|..+.
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~------------------------~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPP------------------------IFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCC------------------------CTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHH------------------------HhcCCCCCCEEECCCCCchhhcchhhh
Confidence            3 334566666777777766666543332                        344555666666666655555665666


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc
Q 037315          409 GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH  448 (693)
Q Consensus       409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  448 (693)
                      ++++|++|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus       275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            6666666666666666666666666666666666655443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=4e-25  Score=241.11  Aligned_cols=94  Identities=23%  Similarity=0.272  Sum_probs=57.0

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEec
Q 037315          195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQL  274 (693)
Q Consensus       195 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  274 (693)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|+++++..    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            5777777777776 4555444  67777777777776 5555    25667777777766665322    4466666666


Q ss_pred             cCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315          275 EGNHFVGEIPQSLSKCSSLEGLYLNNNSLS  304 (693)
Q Consensus       275 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  304 (693)
                      ++|.+++ +|.   .+++|+.|++++|.++
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence            6666653 222   3445555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=8.8e-27  Score=249.56  Aligned_cols=244  Identities=21%  Similarity=0.197  Sum_probs=170.4

Q ss_pred             CCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECc
Q 037315          268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDIS  347 (693)
Q Consensus       268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  347 (693)
                      +|++|++++|.+.+..|..|..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+..     ..++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            44444444444444434444445555555555555443322  444555555555555544321     12566666666


Q ss_pred             CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccC
Q 037315          348 DNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV  427 (693)
Q Consensus       348 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  427 (693)
                      +|.+.+.                       .+    ..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus       108 ~N~l~~~-----------------------~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          108 NNNISRV-----------------------SC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             SSCCCCE-----------------------EE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcCCCC-----------------------Cc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence            6666532                       11    23467888888888888777778888888888888888888877


Q ss_pred             CcccC-CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315          428 PVQLC-GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF  506 (693)
Q Consensus       428 ~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (693)
                      |..+. .+++|++|++++|.+++..+..+                                                   
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---------------------------------------------------  189 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKGQVV---------------------------------------------------  189 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEECCCC---------------------------------------------------
T ss_pred             hHHHhhhCCcccEEecCCCcccccccccc---------------------------------------------------
Confidence            77775 68899999999998876633221                                                   


Q ss_pred             ccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc-ccCCcccccCCC
Q 037315          507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN-GKIPHQLVELKE  585 (693)
Q Consensus       507 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~  585 (693)
                          +++|+.|+|++|.+++..| .+..+++|+.|+|++|.++++ |..+..+++|+.|++++|++. +.+|..+..++.
T Consensus       190 ----l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          190 ----FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             ----CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred             ----CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence                5679999999999997555 488999999999999999975 667899999999999999998 667778888888


Q ss_pred             CCEEecC-------CCcCcccCCC
Q 037315          586 LAVFSVA-------YNNLSGEIPE  602 (693)
Q Consensus       586 L~~L~l~-------~N~l~~~~p~  602 (693)
                      |+.++++       .++..|..+.
T Consensus       264 L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          264 VQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             HHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             CcEEeccccccccCCCcccccCCc
Confidence            9888886       6666655543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.6e-24  Score=236.49  Aligned_cols=114  Identities=25%  Similarity=0.283  Sum_probs=76.3

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEE
Q 037315          170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA  249 (693)
Q Consensus       170 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  249 (693)
                      +++.|++++|.++ .+|..+.   ++|++|++++|.++. +|.   .+++|++|++++|+++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            4677777777776 6666553   577777777777763 443   4577777777777776 5665    367777777


Q ss_pred             ccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315          250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS  304 (693)
Q Consensus       250 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  304 (693)
                      +++|.+++...    .+++|+.|++++|++++ +|..   +++|++|++++|.++
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence            77777776433    45677777777777763 3432   356666666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.5e-27  Score=241.03  Aligned_cols=247  Identities=22%  Similarity=0.256  Sum_probs=154.0

Q ss_pred             CCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc-ccCCcccc-------CCCCCcEEEccCCccccCccccc-
Q 037315          265 NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIPRWLG-------NLTWLIHIIMPKNHLEGPIPVEF-  335 (693)
Q Consensus       265 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~-  335 (693)
                      ..++|++|++++|.+  .+|..+...  |+.|++++|.+. ...+..+.       ++++|++|++++|.+.+..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            345566666666666  344433332  666666666663 22333333       45666666666666665555544 


Q ss_pred             -cCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCC-----CCCcEEeCcCcccCCCcchhhhC
Q 037315          336 -CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNC-----SSLVTLDLSYNLLNGSIPDWIDG  409 (693)
Q Consensus       336 -~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~L~~n~i~~~~~~~~~~  409 (693)
                       ..+++|++|++++|++.+. |.                        .+..+     ++|++|++++|.+.+..+..+.+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~------------------------~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DA------------------------WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SS------------------------HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             HhcCCCccEEEccCCCCcch-hH------------------------HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence             5666666666666666543 22                        22222     67777777777777666667777


Q ss_pred             CCCCCEEEccCCccccc--CCccc--CCCCCCCEEEccCCcCcccCC---CCcccCccccccCCCCCCchhhhHhhhhcc
Q 037315          410 LSQLSHLILGNNNLEGE--VPVQL--CGLNQLQLLDLSNNNLHGLIP---PCFDNTKLHESYNNSSSPDEQFKILFSIKG  482 (693)
Q Consensus       410 l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  482 (693)
                      +++|++|++++|++.+.  .+..+  ..+++|++|++++|++++...   ..+.                          
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------------------  225 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--------------------------  225 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--------------------------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--------------------------
Confidence            77777777777776543  22233  667777777777777653210   0000                          


Q ss_pred             cCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCc-hhhccCCCCCeeeCCCccCCccCcccccCCCC
Q 037315          483 HQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP-PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQ  561 (693)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  561 (693)
                                                 .+++|++|++++|++.+..| ..+..+++|++|++++|+++.+ |..+.  ++
T Consensus       226 ---------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~  275 (312)
T 1wwl_A          226 ---------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--AK  275 (312)
T ss_dssp             ---------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--SE
T ss_pred             ---------------------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--CC
Confidence                                       14567777777777776554 4456677888888888888744 54544  77


Q ss_pred             CCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315          562 IESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       562 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  598 (693)
                      |++||+++|++++. |. +..+++|++|++++|++++
T Consensus       276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88888888888755 54 7778888888888888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.5e-24  Score=214.09  Aligned_cols=206  Identities=24%  Similarity=0.302  Sum_probs=142.1

Q ss_pred             CCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEcc
Q 037315          340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG  419 (693)
Q Consensus       340 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  419 (693)
                      ..+.+++++++++. +|..+ +..++.|++++|.+.+. +...|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            57788998888874 34322 25677777777777433 33366777777777777777775555566777777777777


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeec
Q 037315          420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTT  499 (693)
Q Consensus       420 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (693)
                      +|++++..+..|..+++|++|++++|++++..+..|..                                          
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------  131 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------  131 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------------------------
Confidence            77777666666677777777777777777666655544                                          


Q ss_pred             ccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcc
Q 037315          500 KNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQ  579 (693)
Q Consensus       500 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  579 (693)
                                 +++|++|++++|++.+..+..|..+++|++|++++|.++++.+..|.++++|++|++++|++++..+..
T Consensus       132 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  200 (270)
T 2o6q_A          132 -----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA  200 (270)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence                       446777777777777665556777777777777777777766666777777777777777777666666


Q ss_pred             cccCCCCCEEecCCCcCcccCC
Q 037315          580 LVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       580 l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      +..+++|+.|++++|++.|.++
T Consensus       201 ~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          201 FDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTCTTCCEEECCSSCBCCSSS
T ss_pred             hccccCCCEEEecCCCeeCCCc
Confidence            6677777777777777766554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.4e-27  Score=235.92  Aligned_cols=249  Identities=21%  Similarity=0.192  Sum_probs=125.9

Q ss_pred             cCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCc-ccCChhhh------hcCCCCcEEEccCCcccccCCccC-
Q 037315          143 NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQ-GHIPVEIG------DILPRLISFNISMNALDGSIPSSF-  214 (693)
Q Consensus       143 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~-  214 (693)
                      ..++|++|++++|.+  .++..+...  |+.|++++|.++ ..+|....      ..+++|++|++++|.+++..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344455555555555  222222211  555555555552 23333332      014455555555555554444443 


Q ss_pred             -CCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCC-----CCCCeEeccCccccccCCcCCc
Q 037315          215 -GNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNL-----INLRWLQLEGNHFVGEIPQSLS  288 (693)
Q Consensus       215 -~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~  288 (693)
                       ..+++|++|++++|.++                         +. |..+..+     ++|++|++++|.+.+..+..+.
T Consensus       117 ~~~l~~L~~L~Ls~N~l~-------------------------~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWA-------------------------TR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             SCCSCCCSEEEEESCBCS-------------------------SS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             HhcCCCccEEEccCCCCc-------------------------ch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence             45555555555555554                         33 2222222     4444455555544444444445


Q ss_pred             CCCCCCEEeccCCccccc--CCccc--cCCCCCcEEEccCCccccC---ccccccCCCCCCEEECcCCcCCCCCCCCCCC
Q 037315          289 KCSSLEGLYLNNNSLSGK--IPRWL--GNLTWLIHIIMPKNHLEGP---IPVEFCHLYSLQILDISDNNISGSLPSCFHP  361 (693)
Q Consensus       289 ~l~~L~~L~L~~n~i~~~--~~~~l--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  361 (693)
                      .+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+.+.   ....+..+++|++|++++|++.+..+     
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----  245 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----  245 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----
Confidence            555555555555544322  11122  4455555555555555421   11223456677777777776664331     


Q ss_pred             CcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037315          362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLD  441 (693)
Q Consensus       362 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  441 (693)
                                        ...+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|+
T Consensus       246 ------------------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          246 ------------------APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS  302 (312)
T ss_dssp             ------------------CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred             ------------------hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence                              113444566677777777666 4454444  6677777777777654 44 66777777777


Q ss_pred             ccCCcCcc
Q 037315          442 LSNNNLHG  449 (693)
Q Consensus       442 l~~n~~~~  449 (693)
                      +++|++++
T Consensus       303 L~~N~l~~  310 (312)
T 1wwl_A          303 LKGNPFLD  310 (312)
T ss_dssp             CTTCTTTC
T ss_pred             ccCCCCCC
Confidence            77777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.1e-24  Score=216.13  Aligned_cols=110  Identities=24%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             CCCCEEECcCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEE
Q 037315          339 YSLQILDISDNNISGSLPSCF-HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLI  417 (693)
Q Consensus       339 ~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  417 (693)
                      ++|++|++++|++.+..+..+ ..++|+.|++++|++.+..+ ..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            457777777777664444222 23444444444444432222 2344444444444444444444444444444444444


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEccCCcCcc
Q 037315          418 LGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG  449 (693)
Q Consensus       418 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  449 (693)
                      +++|.+++..+..+..+++|++|++++|.+.+
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            44444444333344444444444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.7e-24  Score=214.80  Aligned_cols=229  Identities=22%  Similarity=0.207  Sum_probs=162.0

Q ss_pred             EeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcC
Q 037315          272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNI  351 (693)
Q Consensus       272 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  351 (693)
                      .+..+..+. .+|..+.  +++++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            344444454 4454443  4688888888888876666778888888888888888766666777788888888888777


Q ss_pred             CCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccccc-CCcc
Q 037315          352 SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE-VPVQ  430 (693)
Q Consensus       352 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~  430 (693)
                      .+.                        +...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..
T Consensus        89 ~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           89 QSL------------------------ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             CEE------------------------CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             Ccc------------------------ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence            532                        222678889999999999999977776799999999999999999864 4778


Q ss_pred             cCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccc
Q 037315          431 LCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKV  510 (693)
Q Consensus       431 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (693)
                      +..+++|++|++++|++++..+..+..                                                     
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------------------------  171 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSIYCTDLRV-----------------------------------------------------  171 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHH-----------------------------------------------------
T ss_pred             hccCCCCCEEECCCCCCCcCCHHHhhh-----------------------------------------------------
Confidence            888888888888888776554433322                                                     


Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCC-eeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF  589 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  589 (693)
                      +++|+                     .|. +|++++|.++++.+..+.. .+|++|++++|++++..+..+..+++|+.|
T Consensus       172 l~~L~---------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          172 LHQMP---------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             HHTCT---------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred             hhhcc---------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEE
Confidence            11122                     222 5666666666665554443 367777777777776666666777777777


Q ss_pred             ecCCCcCcccCCC
Q 037315          590 SVAYNNLSGEIPE  602 (693)
Q Consensus       590 ~l~~N~l~~~~p~  602 (693)
                      ++++|+++|.+|.
T Consensus       230 ~l~~N~~~c~c~~  242 (276)
T 2z62_A          230 WLHTNPWDCSCPR  242 (276)
T ss_dssp             ECCSSCBCCCTTT
T ss_pred             EccCCcccccCCc
Confidence            7777777776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=3.8e-24  Score=212.90  Aligned_cols=205  Identities=26%  Similarity=0.273  Sum_probs=114.8

Q ss_pred             ccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315          335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS  414 (693)
Q Consensus       335 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  414 (693)
                      +..++++++++++++.++...+..  +..++.|++++|.+.+..+. .|..+++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            567788888998888887433222  24556666666665433332 55555666666666665553322  14555566


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccce
Q 037315          415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF  494 (693)
Q Consensus       415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (693)
                      +|++++|+++ .+|..+..+++|++|++++|++++..+..|..                                     
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------  122 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------  122 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-------------------------------------
Confidence            6666666555 34445555555666666665555555444443                                     


Q ss_pred             eeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315          495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG  574 (693)
Q Consensus       495 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  574 (693)
                                      +++|++|++++|++++..+..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|+++ 
T Consensus       123 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-  185 (290)
T 1p9a_G          123 ----------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (290)
T ss_dssp             ----------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ----------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence                            335555555555555554555555555555555555555555555555555555555555555 


Q ss_pred             cCCcccccCCCCCEEecCCCcCccc
Q 037315          575 KIPHQLVELKELAVFSVAYNNLSGE  599 (693)
Q Consensus       575 ~~~~~l~~l~~L~~L~l~~N~l~~~  599 (693)
                      .+|..+...++|+.+++++|++.|.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccChhhcccccCCeEEeCCCCccCc
Confidence            3444444555555555555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=9.3e-28  Score=266.39  Aligned_cols=419  Identities=14%  Similarity=0.106  Sum_probs=240.0

Q ss_pred             CchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCC
Q 037315          136 FPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFG  215 (693)
Q Consensus       136 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  215 (693)
                      .+..++..+++|++|+++++.........-..        . +.... .....+...+++|++|++++|.+++..+..+.
T Consensus        57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~--------~-~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~  126 (594)
T 2p1m_B           57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDG--------W-GGYVY-PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA  126 (594)
T ss_dssp             CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTT--------S-CCBCH-HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred             CHHHHHhhCCCceEEeccCCCchhhccccccc--------c-cchhh-HHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH
Confidence            34455677888888888887532211100000        0 00000 00011222355666666666665544444443


Q ss_pred             -CCCCCCEEEcccC-ccccccchHHhhCCCCCcEEEccccccccccCccC----CCCCCCCeEeccCcc--cccc-CCcC
Q 037315          216 -NMNLLQILDLSNN-QLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRN----FNLINLRWLQLEGNH--FVGE-IPQS  286 (693)
Q Consensus       216 -~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n~--l~~~-~~~~  286 (693)
                       .+++|++|++++| .+.+.....+..++++|++|++++|.+.+..+..+    ..+++|++|++++|.  +... ++..
T Consensus       127 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence             4566666666666 33322122333346666666666666554332222    245567777776665  1110 1111


Q ss_pred             CcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCc-------cccCccccccCCCCCCEE-ECcCCcCCCCCCCC
Q 037315          287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNH-------LEGPIPVEFCHLYSLQIL-DISDNNISGSLPSC  358 (693)
Q Consensus       287 l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~  358 (693)
                      +..+++|+.|++++|...+.++..+..+++|++|+++.+.       +.+ .+..+.++++|+.+ .+.+... +.++..
T Consensus       207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~  284 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAV  284 (594)
T ss_dssp             HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGG
T ss_pred             HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHH
Confidence            2335677777777662222245556666777777754442       222 22356677777777 3332221 111211


Q ss_pred             C-CCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCC-cchhhhCCCCCCEEEccC---------CcccccC
Q 037315          359 F-HPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS-IPDWIDGLSQLSHLILGN---------NNLEGEV  427 (693)
Q Consensus       359 ~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~  427 (693)
                      . .+++|+.|++++|.+.+......+..+++|++|++++| +.+. .+.....+++|++|++.+         +.+++..
T Consensus       285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~  363 (594)
T 2p1m_B          285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG  363 (594)
T ss_dssp             HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred             HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence            1 24567777777776544333224567889999999888 4322 223334588899998843         3444333


Q ss_pred             CcccC-CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeee
Q 037315          428 PVQLC-GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF  506 (693)
Q Consensus       428 ~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (693)
                      ...+. ++++|+.|++..|.+++.....+.                                                  
T Consensus       364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~--------------------------------------------------  393 (594)
T 2p1m_B          364 LVSVSMGCPKLESVLYFCRQMTNAALITIA--------------------------------------------------  393 (594)
T ss_dssp             HHHHHHHCTTCCEEEEEESCCCHHHHHHHH--------------------------------------------------
T ss_pred             HHHHHHhchhHHHHHHhcCCcCHHHHHHHH--------------------------------------------------
Confidence            22332 478888888877776532211110                                                  


Q ss_pred             ccccccCcceEECC--C----Cccccc-----CchhhccCCCCCeeeCCCccCCccCcccccC-CCCCCEEeCCCccccc
Q 037315          507 QGKVLSLLSGLDLS--C----NKLIGH-----IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSN-LKQIESLDLSYNKLNG  574 (693)
Q Consensus       507 ~~~~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~  574 (693)
                        ..+++|+.|+++  +    +.+++.     .+..+..+++|++|++++ .+++..+..+.. +++|+.|+|++|.+++
T Consensus       394 --~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~  470 (594)
T 2p1m_B          394 --RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD  470 (594)
T ss_dssp             --HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred             --hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence              115689999998  3    455521     223367889999999987 676655555555 8999999999999976


Q ss_pred             cCCccc-ccCCCCCEEecCCCcCcccCC-CCccccCcCCcccccCccC
Q 037315          575 KIPHQL-VELKELAVFSVAYNNLSGEIP-EWKAQFATFNENSYEGNTF  620 (693)
Q Consensus       575 ~~~~~l-~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~  620 (693)
                      ..+..+ ..+++|++|++++|++++... .....+++++.+++++|+.
T Consensus       471 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            655555 678999999999999965433 2345578899999999876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.1e-23  Score=207.86  Aligned_cols=206  Identities=24%  Similarity=0.263  Sum_probs=175.7

Q ss_pred             cccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEc
Q 037315          363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL  442 (693)
Q Consensus       363 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  442 (693)
                      ..+.++++++.+.. +|. .+  .+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus        17 ~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            46788999888853 554 22  267999999999998777778999999999999999998776677888999999999


Q ss_pred             cCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCC
Q 037315          443 SNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCN  522 (693)
Q Consensus       443 ~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  522 (693)
                      ++|++.+..+..|..                                                     +++|++|++++|
T Consensus        93 ~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n  119 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQ-----------------------------------------------------LVNLAELRLDRN  119 (270)
T ss_dssp             CSSCCCCCCTTTTTT-----------------------------------------------------CSSCCEEECCSS
T ss_pred             CCCcCCcCCHhHccc-----------------------------------------------------ccCCCEEECCCC
Confidence            999998877766655                                                     458999999999


Q ss_pred             cccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC
Q 037315          523 KLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE  602 (693)
Q Consensus       523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  602 (693)
                      ++++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            99988888889999999999999999988888889999999999999999988777888899999999999999877777


Q ss_pred             CccccCcCCcccccCccCCCCCC
Q 037315          603 WKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       603 ~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      .+..+.++..+++++||+.|+|+
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCc
Confidence            67788888999999999999986

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.8e-24  Score=212.39  Aligned_cols=225  Identities=23%  Similarity=0.251  Sum_probs=173.7

Q ss_pred             CCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCc
Q 037315          293 LEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN  372 (693)
Q Consensus       293 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  372 (693)
                      +..+++..+.+.+.  .....+++|+.|++++|.+...  ..+..+++|++|++++|.+.+                   
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-------------------   77 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-------------------   77 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-------------------
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-------------------
Confidence            34445555544322  2344566666666666666532  235566666666666666542                   


Q ss_pred             ccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315          373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP  452 (693)
Q Consensus       373 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  452 (693)
                           ++  .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus        78 -----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A           78 -----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             -----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence                 11  56778899999999999987777778889999999999999997777778899999999999999887777


Q ss_pred             CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315          453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV  532 (693)
Q Consensus       453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  532 (693)
                      ..|..                                                     +++|++|++++|++++..+..+
T Consensus       151 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~  177 (272)
T 3rfs_A          151 GVFDK-----------------------------------------------------LTNLTELDLSYNQLQSLPEGVF  177 (272)
T ss_dssp             TTTTT-----------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred             HHhcc-----------------------------------------------------CccCCEEECCCCCcCccCHHHh
Confidence            66655                                                     4589999999999998877778


Q ss_pred             ccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcccc
Q 037315          533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF  607 (693)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  607 (693)
                      ..+++|++|++++|+++++++..+..+++|+.|++++|++.+.       +++|+.++++.|.++|.+|.+++.+
T Consensus       178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            8999999999999999998888889999999999999988743       5578889999999999999876544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=8.3e-23  Score=203.21  Aligned_cols=203  Identities=25%  Similarity=0.195  Sum_probs=120.1

Q ss_pred             CcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccE
Q 037315          287 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQ  366 (693)
Q Consensus       287 l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  366 (693)
                      +..++++++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|+.|++++|.+.+.            
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc------------
Confidence            344556666666666665 2333332  4556666666666555555566666666666666655421            


Q ss_pred             EEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 037315          367 VHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN  446 (693)
Q Consensus       367 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  446 (693)
                                  +  ....+++|++|++++|.++ .+|..+.++++|++|++++|++++..+..|.++++|++|++++|+
T Consensus        71 ------------~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           71 ------------Q--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             ------------E--CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             ------------c--CCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence                        1  1134566666666666666 445556666666666666666665555666666666666666666


Q ss_pred             CcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccc
Q 037315          447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIG  526 (693)
Q Consensus       447 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  526 (693)
                      +++..+..|..                                                     +++|+.|++++|++++
T Consensus       136 l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          136 LKTLPPGLLTP-----------------------------------------------------TPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCCCCTTTTTT-----------------------------------------------------CTTCCEEECTTSCCSC
T ss_pred             CCccChhhccc-----------------------------------------------------ccCCCEEECCCCcCCc
Confidence            66555555443                                                     3356666666666665


Q ss_pred             cCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315          527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN  573 (693)
Q Consensus       527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  573 (693)
                      ..+..|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|++.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence            5555566666666666666666643 444555566666666666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.2e-22  Score=198.14  Aligned_cols=162  Identities=27%  Similarity=0.295  Sum_probs=145.2

Q ss_pred             CCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCC
Q 037315          387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN  466 (693)
Q Consensus       387 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~  466 (693)
                      ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..         
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------  105 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH---------  105 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc---------
Confidence            58899999999998888888999999999999999999888888899999999999999998887777655         


Q ss_pred             CCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCc
Q 037315          467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN  546 (693)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  546 (693)
                                                                  +++|++|++++|++++..+..|..+++|++|+|++|
T Consensus       106 --------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A          106 --------------------------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence                                                        558999999999999887778899999999999999


Q ss_pred             cCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          547 NLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       547 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      +++++.+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|...
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            9999888889999999999999999998888889999999999999999998743

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=3.1e-22  Score=197.63  Aligned_cols=202  Identities=24%  Similarity=0.245  Sum_probs=154.8

Q ss_pred             CEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCC
Q 037315          342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNN  421 (693)
Q Consensus       342 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  421 (693)
                      ..+++..+.+.+. .......+++.|++++|.+.. ++  .+..+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            3444555544422 122236678888888887743 32  467788888888888888753  46788888888888888


Q ss_pred             cccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeeccc
Q 037315          422 NLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKN  501 (693)
Q Consensus       422 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (693)
                      .+++..+..+..+++|++|++++|++.+..+..|..                                            
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------------  131 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK--------------------------------------------  131 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------------------------------------
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc--------------------------------------------
Confidence            888777777888888888888888888777766655                                            


Q ss_pred             ceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccc
Q 037315          502 IAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLV  581 (693)
Q Consensus       502 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  581 (693)
                               +++|++|++++|++++..+..+..+++|++|++++|+++++.+..|..+++|++|++++|++++..|..+.
T Consensus       132 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (272)
T 3rfs_A          132 ---------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD  202 (272)
T ss_dssp             ---------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ---------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence                     45788888888888877777778888888888888888888777788888888888888888887777788


Q ss_pred             cCCCCCEEecCCCcCcccCCC
Q 037315          582 ELKELAVFSVAYNNLSGEIPE  602 (693)
Q Consensus       582 ~l~~L~~L~l~~N~l~~~~p~  602 (693)
                      .+++|++|++++|++.|.+|.
T Consensus       203 ~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             TCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcCCCEEEccCCCccccCcH
Confidence            888888888888888877764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=4.5e-22  Score=194.05  Aligned_cols=183  Identities=25%  Similarity=0.319  Sum_probs=166.4

Q ss_pred             CCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCC
Q 037315          387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN  466 (693)
Q Consensus       387 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~  466 (693)
                      ...++++++++.++ .+|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..         
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------   81 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---------   81 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc---------
Confidence            45788999999998 4565444  68999999999999888889999999999999999999988877765         


Q ss_pred             CCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCc
Q 037315          467 SSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN  546 (693)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  546 (693)
                                                                  +++|++|++++|++++..+..|..+++|++|+|++|
T Consensus        82 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           82 --------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             --------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence                                                        558999999999999888888999999999999999


Q ss_pred             cCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCC-CC
Q 037315          547 NLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCG-LP  625 (693)
Q Consensus       547 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~-~~  625 (693)
                      +++++.+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+.++..+++++|++.|+ |.
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            99999888899999999999999999988888899999999999999999988888888899999999999999998 43

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.6e-23  Score=216.27  Aligned_cols=87  Identities=18%  Similarity=0.225  Sum_probs=42.6

Q ss_pred             CcceEECCCCccccc----Cchhhcc-CCCCCeeeCCCccCCccCc----ccccCCCCCCEEeCCCccccccCC------
Q 037315          513 LLSGLDLSCNKLIGH----IPPQVGN-LTRIQTLNLSHNNLTGLIP----STFSNLKQIESLDLSYNKLNGKIP------  577 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~------  577 (693)
                      +|++|+|++|++.+.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|++|++++|.+.+..+      
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            455555555555432    2223333 2355555555555554433    233445556666666665332222      


Q ss_pred             -cccccCCCCCEEecCCCcCccc
Q 037315          578 -HQLVELKELAVFSVAYNNLSGE  599 (693)
Q Consensus       578 -~~l~~l~~L~~L~l~~N~l~~~  599 (693)
                       ..+..+++|+.||+++|++...
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHhccCCceEEEecCCCcCCCc
Confidence             2344555566666666665544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=7e-22  Score=191.27  Aligned_cols=78  Identities=18%  Similarity=0.168  Sum_probs=41.7

Q ss_pred             Ccc-eEECCCCcccccCchhhccCCCCCeeeCCCcc-CCccCcccccCC-CCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315          513 LLS-GLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNL-KQIESLDLSYNKLNGKIPHQLVELKELAVF  589 (693)
Q Consensus       513 ~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  589 (693)
                      +|+ +|++++|+++...+..|.. ++|++|++++|+ ++++.+..|.++ ++|+.|++++|++++..+.   .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEE
T ss_pred             cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCcee
Confidence            455 5555555555333333333 556666666663 555555556665 6666666666666533222   34555556


Q ss_pred             ecCCC
Q 037315          590 SVAYN  594 (693)
Q Consensus       590 ~l~~N  594 (693)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            65554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.2e-23  Score=219.52  Aligned_cols=243  Identities=19%  Similarity=0.227  Sum_probs=145.7

Q ss_pred             CCcCCCCCCEEeccCCcccccCC----ccccCCCCCcEEEccCCcc---ccCcccc-------ccCCCCCCEEECcCCcC
Q 037315          286 SLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTWLIHIIMPKNHL---EGPIPVE-------FCHLYSLQILDISDNNI  351 (693)
Q Consensus       286 ~l~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~---~~~~~~~-------~~~l~~L~~L~l~~n~~  351 (693)
                      .+..+++|+.|++++|.+.+..+    ..+..+++|++|++++|.+   .+..|..       +..+++|++|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            34444455555555555443322    2234455555555555322   2222222       35666777777777666


Q ss_pred             CCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh----hCC---------CCCCEEEc
Q 037315          352 SGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI----DGL---------SQLSHLIL  418 (693)
Q Consensus       352 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l---------~~L~~L~L  418 (693)
                      .+...                   ..++. .+..+++|++|++++|.++...+..+    ..+         ++|++|++
T Consensus       107 ~~~~~-------------------~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A          107 GPTAQ-------------------EPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             CTTTH-------------------HHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             CHHHH-------------------HHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence            53110                   01221 44556677777777776653333222    223         67777777


Q ss_pred             cCCccc-ccCC---cccCCCCCCCEEEccCCcCcc-----cCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccc
Q 037315          419 GNNNLE-GEVP---VQLCGLNQLQLLDLSNNNLHG-----LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEK  489 (693)
Q Consensus       419 ~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (693)
                      ++|+++ ...+   ..+..+++|++|++++|++..     ..+..+..                                
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------------------------------  214 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------------------------------  214 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--------------------------------
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--------------------------------
Confidence            777776 2233   345567777777777777652     11112211                                


Q ss_pred             cccceeeeecccceeeeccccccCcceEECCCCccc----ccCchhhccCCCCCeeeCCCccCCcc----Cccccc--CC
Q 037315          490 KIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI----GHIPPQVGNLTRIQTLNLSHNNLTGL----IPSTFS--NL  559 (693)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~--~l  559 (693)
                                           +++|++|+|++|.++    ..+|..+..+++|++|+|++|.+++.    ++..+.  .+
T Consensus       215 ---------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  273 (386)
T 2ca6_A          215 ---------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN  273 (386)
T ss_dssp             ---------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred             ---------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence                                 457788888888875    45677788888888888888888765    345553  37


Q ss_pred             CCCCEEeCCCccccc----cCCccc-ccCCCCCEEecCCCcCcccCC
Q 037315          560 KQIESLDLSYNKLNG----KIPHQL-VELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       560 ~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      ++|++|+|++|++++    .+|..+ .++++|++|++++|++++..+
T Consensus       274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            888888888888886    366666 557888888888888886653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.9e-23  Score=215.64  Aligned_cols=67  Identities=19%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             CcceEECCCCcccccCc----hhhccCCCCCeeeCCCccCCccCc-------ccccCCCCCCEEeCCCccccccCCcc
Q 037315          513 LLSGLDLSCNKLIGHIP----PQVGNLTRIQTLNLSHNNLTGLIP-------STFSNLKQIESLDLSYNKLNGKIPHQ  579 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~  579 (693)
                      +|++|+|++|++.+..+    ..+..+++|++|++++|.+.++.+       ..+..+++|+.||+++|++....+..
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            67777777777765544    234566788888888888554433       36777888888999999887664443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=7.6e-23  Score=209.41  Aligned_cols=90  Identities=17%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             ccCcceEECCCCc-ccccCchhhccCCCCCeeeCCCcc-CCccCcccccCCCCCCEEeCCCccccccCCcccccC-CCCC
Q 037315          511 LSLLSGLDLSCNK-LIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL-KELA  587 (693)
Q Consensus       511 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~  587 (693)
                      +++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++| +.   ...+..+ .+++
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~  296 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALP  296 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHST
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCc
Confidence            4567777777777 565666677788888888888885 32222235777888888888888 33   2233333 2366


Q ss_pred             EEecCCCcCcccCCCCc
Q 037315          588 VFSVAYNNLSGEIPEWK  604 (693)
Q Consensus       588 ~L~l~~N~l~~~~p~~~  604 (693)
                      .|++++|++++..|.++
T Consensus       297 ~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          297 HLQINCSHFTTIARPTI  313 (336)
T ss_dssp             TSEESCCCSCCTTCSSC
T ss_pred             ceEEecccCccccCCcc
Confidence            66788888888777654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=7.5e-23  Score=209.49  Aligned_cols=199  Identities=21%  Similarity=0.244  Sum_probs=96.3

Q ss_pred             CCCEEEcccCccccccchHHhhCC--CCCcEEEccccccccccCccCCCCCCCCeEeccCcccccc-CCcCCcCCCCCCE
Q 037315          219 LLQILDLSNNQLTGEIPEHLAMGC--VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGE-IPQSLSKCSSLEG  295 (693)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~  295 (693)
                      .++.++++++.+.   +..+ ..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3667777777654   2222 223  6677777777766654433 33456666666666655433 4444555555555


Q ss_pred             EeccCCcccccCCccccCCCCCcEEEccCC-ccccC-ccccccCCCCCCEEECcCC-cCCCCCCCCCCCCcccEEEccCc
Q 037315          296 LYLNNNSLSGKIPRWLGNLTWLIHIIMPKN-HLEGP-IPVEFCHLYSLQILDISDN-NISGSLPSCFHPLSITQVHLSKN  372 (693)
Q Consensus       296 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n  372 (693)
                      |++++|.+++..+..++.+++|++|++++| .+.+. .+..+..+++|++|++++| .+.+.                  
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------  184 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------  184 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence            555555555444444444555555555555 23321 2233344444444444444 33210                  


Q ss_pred             ccccccCcccccCCC-CCcEEeCcCc--ccC-CCcchhhhCCCCCCEEEccCCc-ccccCCcccCCCCCCCEEEccCC
Q 037315          373 MLHGQLKGGTFFNCS-SLVTLDLSYN--LLN-GSIPDWIDGLSQLSHLILGNNN-LEGEVPVQLCGLNQLQLLDLSNN  445 (693)
Q Consensus       373 ~~~~~~~~~~~~~~~-~L~~L~L~~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n  445 (693)
                          .++. .+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus       185 ----~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          185 ----HVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             ----HHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ----HHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence                0111 234444 5555555555  222 1233344445555555555555 34334444444444555544444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.2e-21  Score=189.55  Aligned_cols=197  Identities=19%  Similarity=0.212  Sum_probs=161.3

Q ss_pred             cccEEEccCcccccccCcccccCCCCCcEEeCcCcc-cCCCcchhhhCCCCCCEEEccC-CcccccCCcccCCCCCCCEE
Q 037315          363 SITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNL-LNGSIPDWIDGLSQLSHLILGN-NNLEGEVPVQLCGLNQLQLL  440 (693)
Q Consensus       363 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  440 (693)
                      +++.|++++|++.+ ++...|..+++|++|++++|. ++...+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            45555555555533 333478889999999999997 8877777899999999999998 99998878889999999999


Q ss_pred             EccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcc---eE
Q 037315          441 DLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLS---GL  517 (693)
Q Consensus       441 ~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~L  517 (693)
                      ++++|++++. |. |..                                                     +++|+   +|
T Consensus       111 ~l~~n~l~~l-p~-~~~-----------------------------------------------------l~~L~~L~~L  135 (239)
T 2xwt_C          111 GIFNTGLKMF-PD-LTK-----------------------------------------------------VYSTDIFFIL  135 (239)
T ss_dssp             EEEEECCCSC-CC-CTT-----------------------------------------------------CCBCCSEEEE
T ss_pred             eCCCCCCccc-cc-ccc-----------------------------------------------------ccccccccEE
Confidence            9999999874 33 443                                                     33455   99


Q ss_pred             ECCCC-cccccCchhhccCCCCC-eeeCCCccCCccCcccccCCCCCCEEeCCCcc-ccccCCcccccC-CCCCEEecCC
Q 037315          518 DLSCN-KLIGHIPPQVGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK-LNGKIPHQLVEL-KELAVFSVAY  593 (693)
Q Consensus       518 ~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~l~~  593 (693)
                      ++++| ++.+..+..|..+++|+ +|++++|+++.+.+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++
T Consensus       136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            99999 99988888899999999 9999999999877777776 899999999995 998888889999 9999999999


Q ss_pred             CcCcccCCCCccccCcCCcccccCcc
Q 037315          594 NNLSGEIPEWKAQFATFNENSYEGNT  619 (693)
Q Consensus       594 N~l~~~~p~~~~~~~~l~~~~~~~n~  619 (693)
                      |++++. |..  .+..+..+.+.++.
T Consensus       215 N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          215 TSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CccccC-Chh--HhccCceeeccCcc
Confidence            999854 442  56677777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=196.70  Aligned_cols=56  Identities=29%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN  573 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  573 (693)
                      +|++|++++|+++ .+|..+.  ++|++|+|++|+++++ | .+..+++|+.|++++|+++
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCC
Confidence            4555555555555 3333332  5666666666666654 2 2556666777777777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=1.9e-21  Score=184.91  Aligned_cols=196  Identities=22%  Similarity=0.276  Sum_probs=151.1

Q ss_pred             cEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCC
Q 037315          390 VTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSS  469 (693)
Q Consensus       390 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~  469 (693)
                      +.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|++++|++.+..|..|..            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            67889999888 4555443  68999999999999877778999999999999999998888887766            


Q ss_pred             CchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCC
Q 037315          470 PDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLT  549 (693)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (693)
                                                               +++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus        79 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           79 -----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                     458999999999998777777888999999999999999


Q ss_pred             ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCCCCCC
Q 037315          550 GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPIC  629 (693)
Q Consensus       550 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c  629 (693)
                      ++.|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++.|.++-     ..+.. .+..++..-  ....|
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l-----~~l~~-~l~~~~~~~--~~~~C  189 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL-----KWLAD-YLHTNPIET--SGARC  189 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG-----HHHHH-HHHHCCCBC--SCCBE
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc-----HHHHH-HHHhCCCCc--cCCCc
Confidence            88888899999999999999999988888888899999999999998875431     11111 112222111  12257


Q ss_pred             CCCCCCCccccccccCCCCC
Q 037315          630 RSPTTMSEASIENERDDNLI  649 (693)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~  649 (693)
                      ..|....+..+.....+++.
T Consensus       190 ~~P~~l~g~~l~~l~~~~~~  209 (220)
T 2v9t_B          190 TSPRRLANKRIGQIKSKKFR  209 (220)
T ss_dssp             EESGGGTTCBGGGSCGGGCC
T ss_pred             CCchHHcCCchhhCCHHHCc
Confidence            77877777777666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=4.6e-21  Score=192.65  Aligned_cols=195  Identities=22%  Similarity=0.343  Sum_probs=134.4

Q ss_pred             ccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCc
Q 037315          311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLV  390 (693)
Q Consensus       311 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  390 (693)
                      ...+++|++|++++|.+... + .+..+++|+.|++++|.+.+.                        +  .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~--~~~~l~~L~   88 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------A--PLKNLTKIT   88 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------G--GGTTCCSCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------h--hHccCCCCC
Confidence            34566777777777777643 2 466777777777777766532                        1  156667777


Q ss_pred             EEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCC
Q 037315          391 TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSP  470 (693)
Q Consensus       391 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~  470 (693)
                      +|++++|.+++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++++..+  +..             
T Consensus        89 ~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------  149 (308)
T 1h6u_A           89 ELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG-------------  149 (308)
T ss_dssp             EEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred             EEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC-------------
Confidence            777777777643  3577777777777777777743 2 27777777777777777765433  222             


Q ss_pred             chhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCc
Q 037315          471 DEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTG  550 (693)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  550 (693)
                                                              +++|++|++++|++++..+  +..+++|++|++++|++++
T Consensus       150 ----------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          150 ----------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence                                                    4567778888887775433  7777888888888888876


Q ss_pred             cCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315          551 LIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       551 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  598 (693)
                      +.+  +..+++|++|++++|++.+..+  +..+++|+.|++++|++++
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            643  7777888888888888875543  6777888888888888765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.3e-21  Score=194.36  Aligned_cols=227  Identities=19%  Similarity=0.178  Sum_probs=168.5

Q ss_pred             CCCCEEEccCccccccCchhh--hhcCCCCCEEEccCCcccccCCCCC--CCCCCCCEEEccCCcCcccCC----hhhhh
Q 037315          120 HDLEDVHFSRIQMNGEFPNWL--LENNTKLRQLSLVNDSLAGPFRLPI--HSHRHLRLLDVSNNNFQGHIP----VEIGD  191 (693)
Q Consensus       120 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~----~~~~~  191 (693)
                      ..++.+.+.++.+.......+  +..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            356777777776653211111  1245679999999999998888777  889999999999999986544    2223 


Q ss_pred             cCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccc--cch-HHhhCCCCCcEEEccccccccccCc---cCCC
Q 037315          192 ILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGE--IPE-HLAMGCVNLEFLALSNNSLKGHMFS---RNFN  265 (693)
Q Consensus       192 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~  265 (693)
                      .+++|++|++++|.+.+..+..|+++++|++|++++|++.+.  ++. .....+++|++|++++|+++.....   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478999999999999888888899999999999999987642  221 2224578899999999988643221   2456


Q ss_pred             CCCCCeEeccCccccccCCcCCcCC---CCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCC
Q 037315          266 LINLRWLQLEGNHFVGEIPQSLSKC---SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQ  342 (693)
Q Consensus       266 l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  342 (693)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++.+. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            7888999999988887767666665   68888888888888 5566553  6888888888888754 22 56778888


Q ss_pred             EEECcCCcCC
Q 037315          343 ILDISDNNIS  352 (693)
Q Consensus       343 ~L~l~~n~~~  352 (693)
                      .|++++|.++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            8888888775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=9.6e-21  Score=190.33  Aligned_cols=192  Identities=24%  Similarity=0.369  Sum_probs=110.3

Q ss_pred             CCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEc
Q 037315          290 CSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHL  369 (693)
Q Consensus       290 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  369 (693)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|++.+.               
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~---------------  100 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---------------  100 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC---------------
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc---------------
Confidence            3344444444444432 11 23444444444444444443322  45555566666655555421               


Q ss_pred             cCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcc
Q 037315          370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG  449 (693)
Q Consensus       370 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  449 (693)
                               +  .+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+  +..+++|+.|++++|++++
T Consensus       101 ---------~--~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          101 ---------S--AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             ---------G--GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             ---------h--hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence                     0  344455556666666655532 2 25566666666666666654322  5566666666666666654


Q ss_pred             cCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCc
Q 037315          450 LIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP  529 (693)
Q Consensus       450 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  529 (693)
                      ..+  +..                                                     +++|+.|++++|++++..+
T Consensus       166 ~~~--l~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          166 LTP--LAN-----------------------------------------------------LSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             CGG--GTT-----------------------------------------------------CTTCCEEECCSSCCCCCGG
T ss_pred             Chh--hcC-----------------------------------------------------CCCCCEEECCCCccCcChh
Confidence            332  222                                                     4467777777777765433


Q ss_pred             hhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315          530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG  574 (693)
Q Consensus       530 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  574 (693)
                        +..+++|++|++++|++++..+  +..+++|+.|++++|++++
T Consensus       191 --l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             --GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             --hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence              7778888888888888887643  7788888888888888874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=7.8e-23  Score=213.36  Aligned_cols=239  Identities=19%  Similarity=0.213  Sum_probs=119.1

Q ss_pred             CCCCcEEEccCCcccccCC----ccCCCCCCCCEEEcccCc---cccccchHH------hhCCCCCcEEEcccccccc--
Q 037315          193 LPRLISFNISMNALDGSIP----SSFGNMNLLQILDLSNNQ---LTGEIPEHL------AMGCVNLEFLALSNNSLKG--  257 (693)
Q Consensus       193 l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~l~~n~l~~--  257 (693)
                      +++|++|++++|.++...+    ..+.++++|++|++++|.   +.+.+|..+      +..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            3445555555554443221    224445555555555532   222333332      1234555555555555544  


Q ss_pred             --ccCccCCCCCCCCeEeccCccccccCCcCC----cCC---------CCCCEEeccCCcccc-cCC---ccccCCCCCc
Q 037315          258 --HMFSRNFNLINLRWLQLEGNHFVGEIPQSL----SKC---------SSLEGLYLNNNSLSG-KIP---RWLGNLTWLI  318 (693)
Q Consensus       258 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~i~~-~~~---~~l~~l~~L~  318 (693)
                        ..+..+..+++|++|++++|.+....+..+    ..+         ++|++|++++|.++. ..+   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              223333444555555555554432221111    112         455555555555541 122   2334445555


Q ss_pred             EEEccCCcccc-----CccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEe
Q 037315          319 HIIMPKNHLEG-----PIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLD  393 (693)
Q Consensus       319 ~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  393 (693)
                      +|++++|.+..     ..+..+..+++|+.|++++|.+....                   ...++. .+..+++|++|+
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~-~l~~~~~L~~L~  250 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAI-ALKSWPNLRELG  250 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHH-HGGGCTTCCEEE
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHH-HHccCCCcCEEE
Confidence            55555555441     12224455555555555555543100                   012222 456667777777


Q ss_pred             CcCcccCCC----cchhhhC--CCCCCEEEccCCcccc----cCCccc-CCCCCCCEEEccCCcCcccC
Q 037315          394 LSYNLLNGS----IPDWIDG--LSQLSHLILGNNNLEG----EVPVQL-CGLNQLQLLDLSNNNLHGLI  451 (693)
Q Consensus       394 L~~n~i~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~  451 (693)
                      +++|.+++.    ++.++..  +++|++|++++|.+++    .++..+ .++++|++|++++|++++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            777777644    3445533  7777777777777775    355555 55777888888887776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.9e-20  Score=188.41  Aligned_cols=243  Identities=19%  Similarity=0.142  Sum_probs=168.5

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcE-EEc
Q 037315          172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEF-LAL  250 (693)
Q Consensus       172 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l  250 (693)
                      ++++.++++++ .+|..+   .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.++...+.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56788888888 788765   3578888888888886666678888888888888888765677777767777665 455


Q ss_pred             cccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccC-CcccccCCccccCCCCCcEEEccCCcccc
Q 037315          251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTWLIHIIMPKNHLEG  329 (693)
Q Consensus       251 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  329 (693)
                      ++|++..+.+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+                     
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~---------------------  146 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER---------------------  146 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT---------------------
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc---------------------
Confidence            56777777777777777777777777777655444444455555666544 23332222                     


Q ss_pred             CccccccCCC-CCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhh
Q 037315          330 PIPVEFCHLY-SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID  408 (693)
Q Consensus       330 ~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  408 (693)
                         ..|..+. .++.|++++|++....+..+...+++++++.++...+.++...|..+++|++|++++|+++...+..  
T Consensus       147 ---~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--  221 (350)
T 4ay9_X          147 ---NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--  221 (350)
T ss_dssp             ---TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred             ---cchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence               2333332 4566666666666555555666667777776544446777778999999999999999998554443  


Q ss_pred             CCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 037315          409 GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN  446 (693)
Q Consensus       409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  446 (693)
                       +.+|+.|.+.++.-....| .+..+++|+.+++.++.
T Consensus       222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence             5567777766665444566 48889999999997643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=178.97  Aligned_cols=157  Identities=24%  Similarity=0.271  Sum_probs=138.2

Q ss_pred             CcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCC-cccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCC
Q 037315          389 LVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVP-VQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNS  467 (693)
Q Consensus       389 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~  467 (693)
                      -+.+++++|.++. +|..+.  +.+++|++++|++++..+ ..|..+++|++|++++|+++++.+..|..          
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------   79 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------   79 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC----------
Confidence            3589999999984 565443  467899999999997754 45889999999999999999888877766          


Q ss_pred             CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCcc
Q 037315          468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN  547 (693)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  547 (693)
                                                                 +++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus        80 -------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           80 -------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             -------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence                                                       5589999999999998888889999999999999999


Q ss_pred             CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       548 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      ++++.|..|.++++|++|+|++|++++..|..|..+++|++|++++|++.|.++
T Consensus       117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999999999999999999999998889999999999999999999998765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=4.8e-20  Score=189.05  Aligned_cols=223  Identities=20%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             CCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCcc-ccccCCCCCCE-EECcCCcCCCCCCCCCCCCcccEEEc
Q 037315          292 SLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP-VEFCHLYSLQI-LDISDNNISGSLPSCFHPLSITQVHL  369 (693)
Q Consensus       292 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~~~L~~L~l  369 (693)
                      ++++|++++|+++...+.+|.++++|++|++++|++.+.++ .+|.+++++++ +.+++|++.                 
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-----------------   93 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-----------------   93 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-----------------
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-----------------
Confidence            45555555555543333444555555555555555433222 33455555443 233334443                 


Q ss_pred             cCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccC-CcccccCCcccCCCC-CCCEEEccCCcC
Q 037315          370 SKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGN-NNLEGEVPVQLCGLN-QLQLLDLSNNNL  447 (693)
Q Consensus       370 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~  447 (693)
                             .++...|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|++
T Consensus        94 -------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           94 -------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             -------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             -------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence                   22222566666677777777766655555555556666676654 455555555566554 577788888887


Q ss_pred             cccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCC-Ccccc
Q 037315          448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC-NKLIG  526 (693)
Q Consensus       448 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~  526 (693)
                      +.+.+..|..                                                      .+|++|++++ |.++.
T Consensus       167 ~~i~~~~f~~------------------------------------------------------~~L~~l~l~~~n~l~~  192 (350)
T 4ay9_X          167 QEIHNSAFNG------------------------------------------------------TQLDELNLSDNNNLEE  192 (350)
T ss_dssp             CEECTTSSTT------------------------------------------------------EEEEEEECTTCTTCCC
T ss_pred             cCCChhhccc------------------------------------------------------cchhHHhhccCCcccC
Confidence            7666655533                                                      2477778764 55665


Q ss_pred             cCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcC
Q 037315          527 HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNL  596 (693)
Q Consensus       527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  596 (693)
                      +.+..|..+++|++|+|++|+++.+++..|.++   +.|.+.++.-...+| .+..+++|+.++++++.-
T Consensus       193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L---~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENL---KKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             CCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC---CEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred             CCHHHhccCcccchhhcCCCCcCccChhhhccc---hHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence            555567888888888888888887766655544   444444443333555 367788888888876543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=2e-20  Score=192.72  Aligned_cols=178  Identities=28%  Similarity=0.298  Sum_probs=104.4

Q ss_pred             cEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhh-CCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315          365 TQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID-GLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS  443 (693)
Q Consensus       365 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  443 (693)
                      +.++++++.+. .+|. .+  .+.++.|+|++|.+++..+..+. ++++|++|++++|++++..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            45666666553 2333 11  23466666666666655555555 66666666666666665555566666666666666


Q ss_pred             CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315          444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK  523 (693)
Q Consensus       444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  523 (693)
                      +|++.++.+..|..                                                     +++|++|+|++|+
T Consensus        97 ~N~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~  123 (361)
T 2xot_A           97 SNHLHTLDEFLFSD-----------------------------------------------------LQALEVLLLYNNH  123 (361)
T ss_dssp             SSCCCEECTTTTTT-----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCC-----------------------------------------------------CcCCCEEECCCCc
Confidence            66666555555443                                                     3356666666666


Q ss_pred             ccccCchhhccCCCCCeeeCCCccCCccCcccc---cCCCCCCEEeCCCccccccCCcccccCCC--CCEEecCCCcCcc
Q 037315          524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF---SNLKQIESLDLSYNKLNGKIPHQLVELKE--LAVFSVAYNNLSG  598 (693)
Q Consensus       524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~  598 (693)
                      +.+..+..|..+++|++|+|++|+++++.+..|   ..+++|+.|+|++|++++..+..+..++.  ++.|++++|++.|
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            666656666666666666666666666555444   44666666666666666554455555554  2556666666655


Q ss_pred             c
Q 037315          599 E  599 (693)
Q Consensus       599 ~  599 (693)
                      .
T Consensus       204 ~  204 (361)
T 2xot_A          204 D  204 (361)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=6.2e-20  Score=173.39  Aligned_cols=162  Identities=27%  Similarity=0.299  Sum_probs=139.6

Q ss_pred             CCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccC
Q 037315          386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYN  465 (693)
Q Consensus       386 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~  465 (693)
                      .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..        
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------   98 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------   98 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence            368899999999998777777888999999999999998777777889999999999999998777766655        


Q ss_pred             CCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCC
Q 037315          466 NSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSH  545 (693)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  545 (693)
                                                                   +++|++|++++|++++..+..|..+++|++|++++
T Consensus        99 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           99 ---------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                         55899999999999987777789999999999999


Q ss_pred             ccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcccc
Q 037315          546 NNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF  607 (693)
Q Consensus       546 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  607 (693)
                      |+++++.+..|..+++|++|++++|++.+       .+++|+.|+++.|.++|.+|++++.+
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            99998888889999999999999998864       45688999999999999999876544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.1e-19  Score=170.88  Aligned_cols=114  Identities=25%  Similarity=0.299  Sum_probs=58.8

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +|++|+|++|++.+..|..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            45555555555554445555555555555555555554444445555555555555555554445555555555555555


Q ss_pred             CCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315          593 YNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       593 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      +|++++..+..+..+.++..+++++||+.|+|++
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            5555544444444444555555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=170.58  Aligned_cols=116  Identities=18%  Similarity=0.259  Sum_probs=79.9

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      +++|++|++++|++++..+..|..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..|..|..+++|++|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            44667777777777666666667777777777777777766666677777777777777777766666666777777777


Q ss_pred             cCCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315          591 VAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       591 l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      +++|++++..|..+..+.++..+++++||+.|+|+.
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            777777766666666666666677777777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=8.7e-19  Score=167.77  Aligned_cols=157  Identities=27%  Similarity=0.259  Sum_probs=136.0

Q ss_pred             CCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCC
Q 037315          388 SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNS  467 (693)
Q Consensus       388 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~  467 (693)
                      .-+.++.+++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++..+.+..|..          
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            4678999999887 4554443  88999999999999888888999999999999999998777776655          


Q ss_pred             CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCcc
Q 037315          468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN  547 (693)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  547 (693)
                                                                 +++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus        87 -------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           87 -------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence                                                       5589999999999998877788999999999999999


Q ss_pred             CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       548 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      ++.+ |..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus       124 l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9954 7788999999999999999998777888999999999999999998765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3.5e-19  Score=191.78  Aligned_cols=187  Identities=27%  Similarity=0.337  Sum_probs=123.9

Q ss_pred             CCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEcc
Q 037315          340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILG  419 (693)
Q Consensus       340 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  419 (693)
                      +++.|++++|.+.+ +|..+ +++|+.|++++|.+. .+|    ..+++|+.|++++|.+++ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            44455555544443 22211 234555555555543 333    235778888888888875 555 544  78888888


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeec
Q 037315          420 NNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTT  499 (693)
Q Consensus       420 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (693)
                      +|++++ +|.   .+++|+.|++++|.++++.+    .                                          
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~------------------------------------------  158 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----L------------------------------------------  158 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----C------------------------------------------
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCC----c------------------------------------------
Confidence            888875 444   57788888888888776322    1                                          


Q ss_pred             ccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCC-------CEEeCCCccc
Q 037315          500 KNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI-------ESLDLSYNKL  572 (693)
Q Consensus       500 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~N~l  572 (693)
                                 +++|++|++++|++++ +|. |.  ++|+.|+|++|+|+.+ |. |..  +|       +.|+|++|+|
T Consensus       159 -----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          159 -----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             -----------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSCC
T ss_pred             -----------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCcc
Confidence                       4468888888888876 454 55  7888888888888855 33 544  66       8888888888


Q ss_pred             cccCCcccccCCCCCEEecCCCcCcccCCCCcccc
Q 037315          573 NGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF  607 (693)
Q Consensus       573 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  607 (693)
                      + .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            8 567777778888888888888888777655443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=4e-19  Score=182.91  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=49.3

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCccc---ccCCCCCEE
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQL---VELKELAVF  589 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L  589 (693)
                      +|++|+|++|++.+..+..|..+++|++|+|++|+++++.|..|.++++|+.|+|++|++++..+..+   ..+++|+.|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            44445555554444444444444455555555555444444444444555555555554443332222   234444555


Q ss_pred             ecCCCcCcccCCCCccccCc--CCcccccCccCCCCC
Q 037315          590 SVAYNNLSGEIPEWKAQFAT--FNENSYEGNTFLCGL  624 (693)
Q Consensus       590 ~l~~N~l~~~~p~~~~~~~~--l~~~~~~~n~~~c~~  624 (693)
                      ++++|+++...+..+..++.  +..+.+.+||+.|+|
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            55555444322222222222  133444445554444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.2e-18  Score=164.43  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=15.6

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCEEEcccCccc
Q 037315          195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT  231 (693)
Q Consensus       195 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  231 (693)
                      ++++|++++|.+++..+..|.++++|++|++++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   65 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ   65 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC
Confidence            4444444444444333333344444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.9e-18  Score=165.45  Aligned_cols=153  Identities=29%  Similarity=0.342  Sum_probs=87.3

Q ss_pred             ccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315          364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS  443 (693)
Q Consensus       364 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  443 (693)
                      .+.++.+++.+. .+|...   .++|+.|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            445555555552 333211   2556666666666665555556666666666666666654444555566666666666


Q ss_pred             CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315          444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK  523 (693)
Q Consensus       444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  523 (693)
                      +|++++..+..|..                                                     +++|++|++++|+
T Consensus        97 ~N~l~~l~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           97 TNQLTVLPSAVFDR-----------------------------------------------------LVHLKELFMCCNK  123 (229)
T ss_dssp             SSCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCcCCccChhHhCc-----------------------------------------------------chhhCeEeccCCc
Confidence            66665555544433                                                     3356666666666


Q ss_pred             ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315          524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG  574 (693)
Q Consensus       524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  574 (693)
                      +. .+|..+..+++|++|+|++|+++++.+..|..+++|+.|++++|++.+
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            65 445555666666666666666665555556666666666666666553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=3.4e-18  Score=170.10  Aligned_cols=174  Identities=24%  Similarity=0.360  Sum_probs=132.6

Q ss_pred             ccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCC
Q 037315          335 FCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS  414 (693)
Q Consensus       335 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~  414 (693)
                      +..+++|+.|++++|.+.+.                        +  .+..+++|++|++++|.+++..+  +..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~------------------------~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~   93 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV------------------------Q--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG   93 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC------------------------T--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC------------------------h--hHhcCCCCCEEEccCCccCCCcc--cccCCCCC
Confidence            34567788888888776522                        2  45667888888888888875544  78888888


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccce
Q 037315          415 HLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF  494 (693)
Q Consensus       415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (693)
                      +|++++|++++ . ..+..+++|++|++++|++.+.  ..+..                                     
T Consensus        94 ~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~-------------------------------------  132 (291)
T 1h6t_A           94 WLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVH-------------------------------------  132 (291)
T ss_dssp             EEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGG-------------------------------------
T ss_pred             EEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcC-------------------------------------
Confidence            88888888874 2 3478888888888888887753  12222                                     


Q ss_pred             eeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315          495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG  574 (693)
Q Consensus       495 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  574 (693)
                                      +++|+.|++++|++++.  ..+..+++|++|++++|+++++.+  +..+++|+.|++++|++++
T Consensus       133 ----------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          133 ----------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ----------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ----------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence                            55788888888888865  578888899999999998887755  8888899999999998875


Q ss_pred             cCCcccccCCCCCEEecCCCcCccc
Q 037315          575 KIPHQLVELKELAVFSVAYNNLSGE  599 (693)
Q Consensus       575 ~~~~~l~~l~~L~~L~l~~N~l~~~  599 (693)
                      . + .+..+++|+.|++++|+++..
T Consensus       193 l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          193 L-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             C-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             C-h-hhccCCCCCEEECcCCcccCC
Confidence            4 3 478888999999999988753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.7e-18  Score=169.05  Aligned_cols=190  Identities=24%  Similarity=0.298  Sum_probs=149.7

Q ss_pred             CCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCc
Q 037315          293 LEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN  372 (693)
Q Consensus       293 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  372 (693)
                      +..+.+..+.+.+.  ..+..+++|++|++++|.+...  ..+..+++|+.|++++|++.+.                  
T Consensus        26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~------------------   83 (291)
T 1h6t_A           26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI------------------   83 (291)
T ss_dssp             HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC------------------
T ss_pred             HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC------------------
Confidence            34445666665533  2345788999999999999865  3488899999999999988732                  


Q ss_pred             ccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCC
Q 037315          373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIP  452 (693)
Q Consensus       373 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  452 (693)
                            +  .+..+++|++|++++|.+++ + ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.  
T Consensus        84 ------~--~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--  149 (291)
T 1h6t_A           84 ------K--PLANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--  149 (291)
T ss_dssp             ------G--GGTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--
T ss_pred             ------c--ccccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--
Confidence                  1  25677888888888888875 3 3488889999999999988853  4678889999999999988764  


Q ss_pred             CCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhh
Q 037315          453 PCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQV  532 (693)
Q Consensus       453 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  532 (693)
                      ..+..                                                     +++|++|++++|++.+..+  +
T Consensus       150 ~~l~~-----------------------------------------------------l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          150 TVLSR-----------------------------------------------------LTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             GGGGG-----------------------------------------------------CTTCSEEECCSSCCCCCGG--G
T ss_pred             hhhcc-----------------------------------------------------CCCCCEEEccCCccccchh--h
Confidence            22222                                                     5689999999999987655  8


Q ss_pred             ccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccccc
Q 037315          533 GNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGK  575 (693)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  575 (693)
                      ..+++|++|++++|.++++ + .+..+++|+.|++++|++...
T Consensus       175 ~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             cCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence            8999999999999999986 3 489999999999999999853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=1.4e-17  Score=154.60  Aligned_cols=136  Identities=23%  Similarity=0.367  Sum_probs=108.8

Q ss_pred             CcceEECCCCcccccCch-hhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315          513 LLSGLDLSCNKLIGHIPP-QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV  591 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  591 (693)
                      ++++|++++|++.+..+. .|..+++|++|+|++|+++++.|..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            578888888888766654 4788888888888888888888888888888888888888888888877888888888888


Q ss_pred             CCCcCcccCCCCccccCcCCcccccCccCCCCCCCC----------------CCCCCCCCCccccccccCCCC
Q 037315          592 AYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP----------------ICRSPTTMSEASIENERDDNL  648 (693)
Q Consensus       592 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~~~  648 (693)
                      ++|++++..|..+..+.++..+++++|++.|+|+..                .|..|....+..+.+...+.+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~  182 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhc
Confidence            888888888887778888888888888888887652                488888777776666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=4.5e-18  Score=185.42  Aligned_cols=63  Identities=29%  Similarity=0.275  Sum_probs=33.9

Q ss_pred             ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcc
Q 037315          383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHG  449 (693)
Q Consensus       383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  449 (693)
                      +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|++.+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  145 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD  145 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence            44555666666666655532  2455555566666666555532  235555555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=9.7e-18  Score=156.58  Aligned_cols=154  Identities=18%  Similarity=0.290  Sum_probs=127.7

Q ss_pred             cCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccc
Q 037315          384 FNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES  463 (693)
Q Consensus       384 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~  463 (693)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            56788999999999988 445 5888999999999999776  3347888999999999999998766666654      


Q ss_pred             cCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeC
Q 037315          464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNL  543 (693)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  543 (693)
                                                                     +++|++|++++|++++..+..+..+++|++|++
T Consensus       111 -----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          111 -----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                                           558999999999999888889999999999999


Q ss_pred             CCcc-CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcc
Q 037315          544 SHNN-LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       544 s~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  598 (693)
                      ++|. ++.+ | .+..+++|++|++++|++++. + .+..+++|++|++++|++.+
T Consensus       144 ~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            9998 7655 4 688999999999999999863 3 78899999999999999764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=7e-18  Score=156.47  Aligned_cols=134  Identities=23%  Similarity=0.367  Sum_probs=116.4

Q ss_pred             cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315          512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV  591 (693)
Q Consensus       512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  591 (693)
                      +++++|++++|+++ .+|..|..+++|++|+|++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            46999999999998 66789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCcccCCCCccccCcCCcccccCccCCCCCCCC----------------CCCCCCCCCccccccccCC
Q 037315          592 AYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP----------------ICRSPTTMSEASIENERDD  646 (693)
Q Consensus       592 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~  646 (693)
                      ++|+++...+..+..+.++..+++++||+.|+|+..                .|..|....+..+.....+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~  180 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSK  180 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChH
Confidence            999999877777888999999999999999998652                3666665555544444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=6.3e-17  Score=174.24  Aligned_cols=179  Identities=25%  Similarity=0.351  Sum_probs=107.3

Q ss_pred             CCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEc
Q 037315          146 KLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDL  225 (693)
Q Consensus       146 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  225 (693)
                      ++++|++++|.+++ ++..+  +++|++|++++|+++ .+|    ..+++|++|++++|.+++ +|. +.+  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            66666666666654 33333  256677777777666 555    225667777777776664 444 443  6777777


Q ss_pred             ccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccc
Q 037315          226 SNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG  305 (693)
Q Consensus       226 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  305 (693)
                      ++|.++ .+|.    .+++|++|++++|.++++. .   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ 
T Consensus       128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          128 DNNQLT-MLPE----LPALLEYINADNNQLTMLP-E---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCcCC-CCCC----cCccccEEeCCCCccCcCC-C---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            777766 3555    3666777777777766532 2   45667777777776664 444 44  66777777777666 


Q ss_pred             cCCccccCCCCC-------cEEEccCCccccCccccccCCCCCCEEECcCCcCCCC
Q 037315          306 KIPRWLGNLTWL-------IHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGS  354 (693)
Q Consensus       306 ~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  354 (693)
                      .+|. +..  +|       +.|++++|.+.. +|..+..+++|+.|++++|.+.+.
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence            3444 333  45       666666666663 455555566666666666666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=1.2e-17  Score=163.23  Aligned_cols=168  Identities=21%  Similarity=0.253  Sum_probs=132.3

Q ss_pred             ccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315          364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS  443 (693)
Q Consensus       364 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  443 (693)
                      +..++++++.+.+..   .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            333444444443222   45678899999999998884 44 68889999999999999986544  8889999999999


Q ss_pred             CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315          444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK  523 (693)
Q Consensus       444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  523 (693)
                      +|++++..+...                                                        ++|+.|++++|+
T Consensus        94 ~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N~  117 (263)
T 1xeu_A           94 RNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNNE  117 (263)
T ss_dssp             SSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSSC
T ss_pred             CCccCCcCcccc--------------------------------------------------------CcccEEEccCCc
Confidence            998876433111                                                        368999999999


Q ss_pred             ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315          524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI  600 (693)
Q Consensus       524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  600 (693)
                      +++.  ..+..+++|++|++++|+++++  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..
T Consensus       118 l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          118 LRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            9864  3588999999999999999887  3688899999999999999876  67888999999999999998663

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.3e-17  Score=169.40  Aligned_cols=76  Identities=16%  Similarity=0.077  Sum_probs=49.2

Q ss_pred             CcceEECCCCcccccCchhhccCCCCC-eeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      +|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.+..+.+.+|.++++|+.++
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5566666555 5555556666666666 666666 56666666666677777777666666666666666666666664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3e-17  Score=178.93  Aligned_cols=168  Identities=24%  Similarity=0.333  Sum_probs=105.8

Q ss_pred             CcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccC
Q 037315          245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPK  324 (693)
Q Consensus       245 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  324 (693)
                      +..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3444555555554322  3456777777777777763 23 46667777777777777664433  56666666666666


Q ss_pred             CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcc
Q 037315          325 NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIP  404 (693)
Q Consensus       325 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  404 (693)
                      |.+.+.  ..+..+++|+.|++++|.+.+                        ++  .+..+++|+.|+|++|.+.+.  
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~------------------------l~--~l~~l~~L~~L~Ls~N~l~~l--  146 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISD------------------------IN--GLVHLPQLESLYLGNNKITDI--  146 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCC------------------------Cc--cccCCCccCEEECCCCccCCc--
Confidence            666542  245556666666666665542                        11  456677777777777777754  


Q ss_pred             hhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccc
Q 037315          405 DWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL  450 (693)
Q Consensus       405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  450 (693)
                      ..+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|++.+.
T Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            457777777777777777775544  67777777777777776653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.7e-17  Score=153.92  Aligned_cols=89  Identities=26%  Similarity=0.387  Sum_probs=52.3

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +|++|+|++|++++..|..|..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            45555555555555555555555566666666666665555555566666666666666665555556666666666666


Q ss_pred             CCcCcccCC
Q 037315          593 YNNLSGEIP  601 (693)
Q Consensus       593 ~N~l~~~~p  601 (693)
                      +|+++|.++
T Consensus       135 ~N~l~c~c~  143 (192)
T 1w8a_A          135 SNPFNCNCH  143 (192)
T ss_dssp             TCCBCCSGG
T ss_pred             CCCccCcCc
Confidence            666655444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.8e-17  Score=151.25  Aligned_cols=154  Identities=20%  Similarity=0.325  Sum_probs=119.2

Q ss_pred             cCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCE
Q 037315          336 CHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSH  415 (693)
Q Consensus       336 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  415 (693)
                      ..+++|+.|++++|.+.                        .++  .+..+++|++|++++|.+..  +..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~------------------------~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~   92 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT------------------------DLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLER   92 (197)
T ss_dssp             HHHHTCCEEEEESSCCS------------------------CCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc------------------------ChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCE
Confidence            45566777777777665                        222  45677888999999887653  346888999999


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCccccccccee
Q 037315          416 LILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF  495 (693)
Q Consensus       416 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (693)
                      |++++|++++..+..+..+++|++|++++|++++..+..+..                                      
T Consensus        93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~--------------------------------------  134 (197)
T 4ezg_A           93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT--------------------------------------  134 (197)
T ss_dssp             EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT--------------------------------------
T ss_pred             EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh--------------------------------------
Confidence            999999998777888889999999999999887655554443                                      


Q ss_pred             eeecccceeeeccccccCcceEECCCCc-ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccc
Q 037315          496 EFTTKNIAYIFQGKVLSLLSGLDLSCNK-LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG  574 (693)
Q Consensus       496 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  574 (693)
                                     +++|++|++++|+ +. .+| .+..+++|++|++++|.++++.  .+..+++|+.|++++|++.+
T Consensus       135 ---------------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          135 ---------------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ---------------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             ---------------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence                           5589999999998 55 444 6889999999999999998763  78899999999999999863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=1.3e-15  Score=157.66  Aligned_cols=266  Identities=15%  Similarity=0.173  Sum_probs=178.4

Q ss_pred             CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEE
Q 037315          242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHII  321 (693)
Q Consensus       242 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  321 (693)
                      +..++.+.+.. .++.+....|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......            
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~------------  174 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKED------------  174 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSS------------
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHH------------
Confidence            45566666543 3444444555553 5666665544 443444445443 455555543 33333334            


Q ss_pred             ccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCC
Q 037315          322 MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG  401 (693)
Q Consensus       322 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  401 (693)
                                  +|.+|++|+.+++.+|++.......|...+|+.+.+..+ + ..++..+|.+|++|+.+++..+ ++.
T Consensus       175 ------------aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~  239 (401)
T 4fdw_A          175 ------------IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VST  239 (401)
T ss_dssp             ------------TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred             ------------HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence                        444555555555555544444444444445555555433 2 3566668999999999999875 555


Q ss_pred             CcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc-----ccCCCCcccCccccccCCCCCCchhhhH
Q 037315          402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH-----GLIPPCFDNTKLHESYNNSSSPDEQFKI  476 (693)
Q Consensus       402 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~  476 (693)
                      +...+|.+ .+|+.+.+ .+.++.....+|.++++|+.+++.+|.+.     .+.+.+|..                   
T Consensus       240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-------------------  298 (401)
T 4fdw_A          240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-------------------  298 (401)
T ss_dssp             ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-------------------
T ss_pred             cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-------------------
Confidence            66677887 78999999 45567677888999999999999887765     344555554                   


Q ss_pred             hhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccc
Q 037315          477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF  556 (693)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  556 (693)
                                                        +++|+.+++.+ .+..+....|.++++|+.++|..| ++.+.+.+|
T Consensus       299 ----------------------------------c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          299 ----------------------------------CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             ----------------------------------CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             ----------------------------------CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence                                              44788888884 577777788999999999999654 777888899


Q ss_pred             cCCCCCCEEeCCCccccccCCcccccCC-CCCEEecCCCcCc
Q 037315          557 SNLKQIESLDLSYNKLNGKIPHQLVELK-ELAVFSVAYNNLS  597 (693)
Q Consensus       557 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~  597 (693)
                      .++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+.
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            999 999999999988877777888875 7888888877654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.3e-19  Score=196.49  Aligned_cols=76  Identities=26%  Similarity=0.208  Sum_probs=36.6

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccC-cccccCCCCCCEEeCCCccccccCCcc---cccCCCCCE
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLI-PSTFSNLKQIESLDLSYNKLNGKIPHQ---LVELKELAV  588 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~---l~~l~~L~~  588 (693)
                      +|+.|+|++|++++ +| .++.+++|++|+|++|++++++ |..+.++++|+.|+|++|++++.+|..   +..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            44444444444443 23 4455555555555555555554 555555555555555555555433321   223455555


Q ss_pred             Ee
Q 037315          589 FS  590 (693)
Q Consensus       589 L~  590 (693)
                      |+
T Consensus       565 L~  566 (567)
T 1dce_A          565 IL  566 (567)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=1.2e-15  Score=159.06  Aligned_cols=323  Identities=15%  Similarity=0.169  Sum_probs=151.3

Q ss_pred             CCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315          193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL  272 (693)
Q Consensus       193 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  272 (693)
                      +.+|+++.+.. .++.+...+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +..+....|.++..++..
T Consensus        70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred             CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence            44444444432 233333444445555555554432 22 344444444445544443322 223333334333322222


Q ss_pred             eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315          273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      ....  .......+|.++++|+.+.+.++.. ......|.++++|+.+.+..+ +..+...+|.++..|+.+.+..+...
T Consensus       146 ~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~  221 (394)
T 4fs7_A          146 IPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY  221 (394)
T ss_dssp             CCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred             cCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence            1111  1112234455555566555554322 233445555555665555544 23233445556666666555443321


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315          353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC  432 (693)
Q Consensus       353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  432 (693)
                       .....+....++.+.+....  ..+....|.++..++.+.+..+... ....+|..+..++.+......+   ....|.
T Consensus       222 -i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~  294 (394)
T 4fs7_A          222 -LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFY  294 (394)
T ss_dssp             -ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTT
T ss_pred             -eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccc
Confidence             12222333445555443321  1233345666666666666655433 4445566666666666555432   223455


Q ss_pred             CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315          433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS  512 (693)
Q Consensus       433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  512 (693)
                      ++.+|+.+.+.++ +..+...+|..                                                     ..
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~-----------------------------------------------------c~  320 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFES-----------------------------------------------------CT  320 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTT-----------------------------------------------------CT
T ss_pred             ccccccccccccc-cceechhhhcC-----------------------------------------------------CC
Confidence            6666666666543 33344444443                                                     22


Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCE
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAV  588 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  588 (693)
                      +|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+..+|.++++|+.
T Consensus       321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            4555555432 44444555666666666666544 55555556666666666666543 22 12334555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=6.7e-17  Score=164.16  Aligned_cols=287  Identities=15%  Similarity=0.119  Sum_probs=149.9

Q ss_pred             CCCCCEEEccCCcccccCCCCCCC-CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCC------
Q 037315          144 NTKLRQLSLVNDSLAGPFRLPIHS-HRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGN------  216 (693)
Q Consensus       144 ~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------  216 (693)
                      +.++++|.++++--... ...+.. +++|++|||++|++. ...... ..++.++.+.+..+.   +.+.+|.+      
T Consensus        24 ~~~l~~L~l~g~i~~~~-~~~l~~~l~~L~~LdLs~n~i~-~~~~~~-~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAED-FRHLRDEFPSLKVLDISNAEIK-MYSGKA-GTYPNGKFYIYMANF---VPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEEECHHH-HHHHHHSCTTCCEEEEEEEEEC-CEEESS-SSSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred             hCceeEEEEeccccHHH-HHHHHHhhccCeEEecCcceeE-EecCcc-ccccccccccccccc---cCHHHhcccccccc
Confidence            45677787776421111 111222 667777777777765 110000 012223444444443   23345666      


Q ss_pred             --CCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccc----cccCCcCCcCC
Q 037315          217 --MNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF----VGEIPQSLSKC  290 (693)
Q Consensus       217 --l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l  290 (693)
                        +++|+.|++.+ .++ .++...|.+|++|+++++++|.+..+.+..|..+.++..+....+..    ......+|..+
T Consensus        98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence              77777777777 666 67777777777777777777777776667777666666665554221    11223344455


Q ss_pred             CCCC-EEeccCCccc-ccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCcccEE
Q 037315          291 SSLE-GLYLNNNSLS-GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSITQV  367 (693)
Q Consensus       291 ~~L~-~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L  367 (693)
                      ..|+ .+.+...... ......-....+++.+.+.++-...........+++|+.+++++|++.......|. +.+|+++
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            5555 3333322100 00000001123344444443311111001111356677777776666644444443 4455555


Q ss_pred             EccCcccccccCcccccCCCCCc-EEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037315          368 HLSKNMLHGQLKGGTFFNCSSLV-TLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLD  441 (693)
Q Consensus       368 ~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  441 (693)
                      ++.+| + ..++..+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++...+.+|.++++|+.++
T Consensus       256 ~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            55554 2 345555666676676 676666 55545556666677777777666666666666666666666664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=3.6e-15  Score=154.42  Aligned_cols=242  Identities=13%  Similarity=0.137  Sum_probs=128.1

Q ss_pred             CCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEcc
Q 037315          244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMP  323 (693)
Q Consensus       244 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  323 (693)
                      +|+.+.+..+ +..+....|.++ +|+.+.+.+ .+......+|.+|++|+.+++.+|.++......|. +++|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            3444444332 333333334332 344444443 33333334455555555555555544433333333 3455555554


Q ss_pred             CCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCc
Q 037315          324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSI  403 (693)
Q Consensus       324 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  403 (693)
                      .+ +..+...+|.++++|+.+++..+ +...                        +..+|.+ .+|+.+.+. +.++.+.
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I------------------------~~~aF~~-~~L~~i~lp-~~i~~I~  263 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI------------------------GQEAFRE-SGITTVKLP-NGVTNIA  263 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEE------------------------CTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCc------------------------ccccccc-CCccEEEeC-CCccEEC
Confidence            32 33344455666666666666543 2212                        2223333 344444442 2233233


Q ss_pred             chhhhCCCCCCEEEccCCccc-----ccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhh
Q 037315          404 PDWIDGLSQLSHLILGNNNLE-----GEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILF  478 (693)
Q Consensus       404 ~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  478 (693)
                      ..+|.+|++|+.+.+.++.+.     .....+|.+|++|+.+++.+ .+..+...+|..                     
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~---------------------  321 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG---------------------  321 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT---------------------
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC---------------------
Confidence            444555555555555444432     34455566666666666663 355555555554                     


Q ss_pred             hhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccC
Q 037315          479 SIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSN  558 (693)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  558 (693)
                                                      +.+|+.+++..+ ++.+...+|.++ +|+.+++++|.+..+.+..|.+
T Consensus       322 --------------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          322 --------------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             --------------------------------CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             --------------------------------CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence                                            235666666443 555666778888 8888888888888777788888


Q ss_pred             CC-CCCEEeCCCcccc
Q 037315          559 LK-QIESLDLSYNKLN  573 (693)
Q Consensus       559 l~-~L~~L~Ls~N~l~  573 (693)
                      ++ +++.|++..+.+.
T Consensus       368 ~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          368 FPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCTTCCEEEECGGGHH
T ss_pred             CCCCccEEEeCHHHHH
Confidence            74 7888888877654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=1.5e-16  Score=155.54  Aligned_cols=171  Identities=19%  Similarity=0.216  Sum_probs=113.1

Q ss_pred             CCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEE
Q 037315          242 CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHII  321 (693)
Q Consensus       242 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  321 (693)
                      +.++..++++++.+.+..  .+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555666666666543  35566667777777776663 33 45666666666666666664333  55666666666


Q ss_pred             ccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCC
Q 037315          322 MPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG  401 (693)
Q Consensus       322 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  401 (693)
                      +++|++.+..+  +.. ++|+.|++++|++.                       + ++  .+..+++|+.|++++|.+++
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~-----------------------~-~~--~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELR-----------------------D-TD--SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCS-----------------------B-SG--GGTTCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccC-----------------------C-Ch--hhcCcccccEEECCCCcCCC
Confidence            66666554221  112 55555555555544                       3 22  57788899999999998885


Q ss_pred             CcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccC
Q 037315          402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI  451 (693)
Q Consensus       402 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  451 (693)
                      . + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++....
T Consensus       143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            4 3 688889999999999998865  66888899999999999887653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=5.2e-16  Score=140.83  Aligned_cols=88  Identities=24%  Similarity=0.269  Sum_probs=62.8

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCC---cccccCCCC
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIP---HQLVELKEL  586 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L  586 (693)
                      +++|++|++++|++.+..|..+..+++|++|++++|.++++.+ ..+..+++|++|++++|++++..+   ..+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            3456666666666665566666677778888888887776532 677778888888888888876555   467778888


Q ss_pred             CEEecCCCcCcc
Q 037315          587 AVFSVAYNNLSG  598 (693)
Q Consensus       587 ~~L~l~~N~l~~  598 (693)
                      ++|++++|++..
T Consensus       150 ~~L~l~~n~~~~  161 (168)
T 2ell_A          150 TYLDGYDREDQE  161 (168)
T ss_dssp             CEETTEETTSCB
T ss_pred             cEecCCCCChhh
Confidence            888888887763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=140.63  Aligned_cols=91  Identities=27%  Similarity=0.316  Sum_probs=68.8

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      +++|++|+|++|++++..+..|.++++|++|+|++|+++++.+..|.++++|++|+|++|+++...+..|..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            34566666666666666666777777888888888888877777788888888888888888866666777888888888


Q ss_pred             cCCCcCcccCC
Q 037315          591 VAYNNLSGEIP  601 (693)
Q Consensus       591 l~~N~l~~~~p  601 (693)
                      +++|++.|.+.
T Consensus       133 L~~N~~~C~c~  143 (193)
T 2wfh_A          133 IGANPLYCDCN  143 (193)
T ss_dssp             CCSSCEECSGG
T ss_pred             eCCCCeecCCc
Confidence            88888876543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.63  E-value=2.2e-14  Score=149.50  Aligned_cols=318  Identities=11%  Similarity=0.069  Sum_probs=210.3

Q ss_pred             cccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCC
Q 037315          205 ALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIP  284 (693)
Q Consensus       205 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  284 (693)
                      .++.+...+|.++.+|+.+.+..+ ++ .++..+|.+|.+|+.+++..+ ++.+....|.++.+|+.+.+..+ +.....
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence            355566778999999999999754 66 788888888999999999754 66777788889999998887654 443555


Q ss_pred             cCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCc
Q 037315          285 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLS  363 (693)
Q Consensus       285 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~  363 (693)
                      .+|..+..++.......  ......+|.++++|+.+.+.++. ......+|.++.+|+.+++..+ +.......+. +..
T Consensus       134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            67777654444333332  22445678888899999887654 3355567888888888888665 3322222222 444


Q ss_pred             ccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEcc
Q 037315          364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLS  443 (693)
Q Consensus       364 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  443 (693)
                      |+.+.+..+..  .+.. .+..+.+|+.+.+.... +.....+|.++..++.+.+..+... .....|..+..++.+...
T Consensus       210 L~~i~~~~~~~--~i~~-~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~  284 (394)
T 4fs7_A          210 LENMEFPNSLY--YLGD-FALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG  284 (394)
T ss_dssp             CCBCCCCTTCC--EECT-TTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred             cceeecCCCce--Eeeh-hhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence            55554444322  1111 22233455555554332 2233345555666666666554333 444455556666655554


Q ss_pred             CCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCc
Q 037315          444 NNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNK  523 (693)
Q Consensus       444 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  523 (693)
                      ...+   ...+|..                                                     ..+|+.+.+.++ 
T Consensus       285 ~~~i---~~~~F~~-----------------------------------------------------~~~L~~i~l~~~-  307 (394)
T 4fs7_A          285 SVIV---PEKTFYG-----------------------------------------------------CSSLTEVKLLDS-  307 (394)
T ss_dssp             SSEE---CTTTTTT-----------------------------------------------------CTTCCEEEECTT-
T ss_pred             ceee---ccccccc-----------------------------------------------------cccccccccccc-
Confidence            4321   1122222                                                     457888888765 


Q ss_pred             ccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCC
Q 037315          524 LIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN  594 (693)
Q Consensus       524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  594 (693)
                      +..+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            66677788999999999999754 77788899999999999999887 77788889999999999998754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.3e-16  Score=140.74  Aligned_cols=138  Identities=28%  Similarity=0.261  Sum_probs=114.2

Q ss_pred             CCCCCcEEeCcCcccC-CCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccc
Q 037315          385 NCSSLVTLDLSYNLLN-GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES  463 (693)
Q Consensus       385 ~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~  463 (693)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+.+|..+..      
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------   93 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------   93 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence            3478999999999987 56777788899999999999998865  67888999999999999988765554433      


Q ss_pred             cCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccC-chhhccCCCCCeee
Q 037315          464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHI-PPQVGNLTRIQTLN  542 (693)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~  542 (693)
                                                                     +++|++|++++|++++.. +..+..+++|++|+
T Consensus        94 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A           94 -----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             -----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred             -----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence                                                           558999999999998653 27889999999999


Q ss_pred             CCCccCCccCc---ccccCCCCCCEEeCCCccccccCCc
Q 037315          543 LSHNNLTGLIP---STFSNLKQIESLDLSYNKLNGKIPH  578 (693)
Q Consensus       543 Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~  578 (693)
                      +++|.+++..+   ..+..+++|++|++++|.+. ..|+
T Consensus       127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999998866   58899999999999999987 4443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=2.2e-15  Score=137.91  Aligned_cols=91  Identities=26%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      +++|++|++++|++++..+..|..+++|++|++++|+++++++..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34677777777777766666677788888888888888877777788888888888888888876666677788888888


Q ss_pred             cCCCcCcccCC
Q 037315          591 VAYNNLSGEIP  601 (693)
Q Consensus       591 l~~N~l~~~~p  601 (693)
                      +++|++.|.+|
T Consensus       131 l~~N~~~~~~~  141 (177)
T 2o6r_A          131 LHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCBCCCHH
T ss_pred             ecCCCeeccCc
Confidence            88888887665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=8.7e-16  Score=136.22  Aligned_cols=83  Identities=24%  Similarity=0.278  Sum_probs=61.4

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCcc-CcccccCCCCCCEEeCCCccccccCC---cccccCCCC
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGL-IPSTFSNLKQIESLDLSYNKLNGKIP---HQLVELKEL  586 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L  586 (693)
                      +++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            44677777777777766677777788888888888888765 24677888888888888888876655   467778888


Q ss_pred             CEEecCC
Q 037315          587 AVFSVAY  593 (693)
Q Consensus       587 ~~L~l~~  593 (693)
                      +.|++++
T Consensus       143 ~~L~l~d  149 (149)
T 2je0_A          143 TYLDGYD  149 (149)
T ss_dssp             CEETTBC
T ss_pred             ccccCCC
Confidence            8887763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=2.7e-15  Score=137.37  Aligned_cols=115  Identities=23%  Similarity=0.277  Sum_probs=105.9

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      +++|++|++++|++.+..+..|..+++|++|++++|+++++.+..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            34799999999999988778899999999999999999999888899999999999999999988888889999999999


Q ss_pred             cCCCcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315          591 VAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       591 l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      +++|++++..+..+..+..+..+++++|++.|+|+
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999997777666788999999999999999886

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=9.1e-16  Score=136.08  Aligned_cols=130  Identities=27%  Similarity=0.282  Sum_probs=106.4

Q ss_pred             CCCCCcEEeCcCcccC-CCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccc
Q 037315          385 NCSSLVTLDLSYNLLN-GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHES  463 (693)
Q Consensus       385 ~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~  463 (693)
                      ..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..      
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------   86 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------   86 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh------
Confidence            3478889999999887 56777788889999999999988865  67888999999999999888755544332      


Q ss_pred             cCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCccccc-CchhhccCCCCCeee
Q 037315          464 YNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH-IPPQVGNLTRIQTLN  542 (693)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~  542 (693)
                                                                     +++|++|++++|++++. .+..+..+++|++|+
T Consensus        87 -----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           87 -----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             -----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             -----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence                                                           55799999999998864 347789999999999


Q ss_pred             CCCccCCccCc---ccccCCCCCCEEeCCC
Q 037315          543 LSHNNLTGLIP---STFSNLKQIESLDLSY  569 (693)
Q Consensus       543 Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~  569 (693)
                      +++|.+++..+   ..+..+++|+.||+++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998866   6788999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=1.9e-17  Score=179.42  Aligned_cols=182  Identities=16%  Similarity=0.197  Sum_probs=120.8

Q ss_pred             CCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCc-------------ccccCCccCCCCCCCCEEE-cccCccc
Q 037315          166 HSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNA-------------LDGSIPSSFGNMNLLQILD-LSNNQLT  231 (693)
Q Consensus       166 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~  231 (693)
                      ..+++|+.|++++|+++ .+|..++. +++|++|++++|.             ..+..|..++++++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45666777777777776 66766665 5667777765543             3445556666777777777 5555433


Q ss_pred             cccchHHhh-------CCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCccc
Q 037315          232 GEIPEHLAM-------GCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS  304 (693)
Q Consensus       232 ~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  304 (693)
                       .++.....       ....|+.|++++|.++++ |. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             22211100       123577777777777764 33 777777777777777777 56777777777777777777777


Q ss_pred             ccCCccccCCCCCcEEEccCCccccCc-cccccCCCCCCEEECcCCcCCCCC
Q 037315          305 GKIPRWLGNLTWLIHIIMPKNHLEGPI-PVEFCHLYSLQILDISDNNISGSL  355 (693)
Q Consensus       305 ~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~  355 (693)
                      + +| .++.+++|++|++++|.+.+.. |..+..+++|+.|++++|.+.+..
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            5 45 6777777777777777777665 777777777777777777776443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=6.4e-16  Score=172.99  Aligned_cols=163  Identities=23%  Similarity=0.147  Sum_probs=59.2

Q ss_pred             CCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEEC
Q 037315          267 INLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDI  346 (693)
Q Consensus       267 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  346 (693)
                      +.++.|++.+|.+... +..     .++.++|+.+.+.+              +++..|.+. ..+..+..++.|+.|++
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            4567777777766632 221     23444455444432              223333333 34555666677777777


Q ss_pred             cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCccccc
Q 037315          347 SDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGE  426 (693)
Q Consensus       347 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  426 (693)
                      ++|.+....+..+.+.+|+.|+|++|.+. .+|. .+..+++|+.|+|++|.++ .+|..|.++++|++|+|++|.++ .
T Consensus       232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~  307 (727)
T 4b8c_D          232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T  307 (727)
T ss_dssp             TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred             CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence            77766532222223333333333333332 3332 4455555555555555555 44555555555555555555554 3


Q ss_pred             CCcccCCCCCCCEEEccCCcCcccCCCC
Q 037315          427 VPVQLCGLNQLQLLDLSNNNLHGLIPPC  454 (693)
Q Consensus       427 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~  454 (693)
                      +|..|..+++|++|+|++|++++.+|..
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHH
Confidence            4444555555555555555555444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=4.5e-16  Score=174.23  Aligned_cols=214  Identities=21%  Similarity=0.205  Sum_probs=85.2

Q ss_pred             CCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCC---------CCCCCC-CCCcccEEEccCcccccccCccccc
Q 037315          315 TWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISG---------SLPSCF-HPLSITQVHLSKNMLHGQLKGGTFF  384 (693)
Q Consensus       315 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~---------~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~  384 (693)
                      +.++.|++..|.+... +..     .++.++|+.+.+.+         ..+..+ ....|+.|+|++|.+. .++. .+.
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISA-NIF  244 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGG
T ss_pred             CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCCh-hhc
Confidence            4577788877777643 222     23334444443322         112222 3556666777666664 4444 233


Q ss_pred             CCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccccc
Q 037315          385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESY  464 (693)
Q Consensus       385 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~  464 (693)
                      .+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..|..+++|++|+|++|.++. +|..|..       
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~-------  314 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGN-------  314 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTS-------
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhc-------
Confidence            6666677777776666 55666666666777777777666 456666666667777777666653 3433443       


Q ss_pred             CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC-CCeeeC
Q 037315          465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR-IQTLNL  543 (693)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L  543 (693)
                                                                    +++|+.|+|++|.+++.+|..+..+.. +..|+|
T Consensus       315 ----------------------------------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l  348 (727)
T 4b8c_D          315 ----------------------------------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL  348 (727)
T ss_dssp             ----------------------------------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence                                                          346666777777666666665544322 123566


Q ss_pred             CCccCCccCcccccCCCCCCEEeCCCc--------cccccCCcccccCCCCCEEecCCCcCcc
Q 037315          544 SHNNLTGLIPSTFSNLKQIESLDLSYN--------KLNGKIPHQLVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       544 s~n~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~~  598 (693)
                      ++|.+++.+|.      .|+.|++++|        .+.+..+..+..+..+....+++|-+.+
T Consensus       349 ~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          349 RDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             HHCCCCCCCCC------C-----------------------------------------CCCG
T ss_pred             ccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence            66666665554      3455566665        3333333444455556666677776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.5e-14  Score=132.19  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=57.2

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCCc----ccccCCC
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIPH----QLVELKE  585 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~  585 (693)
                      +++|++|++++|++++..+..+..+++|++|++++|.++.+.+ ..+..+++|+.|++++|++.. .|.    .+..+++
T Consensus        63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~  141 (176)
T 1a9n_A           63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQ  141 (176)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTT
T ss_pred             CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCc
Confidence            3355666666666665544445677777777777777765432 267777777777777777763 344    3777788


Q ss_pred             CCEEecCCCcCcc
Q 037315          586 LAVFSVAYNNLSG  598 (693)
Q Consensus       586 L~~L~l~~N~l~~  598 (693)
                      |++|++++|+...
T Consensus       142 L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          142 VRVLDFQKVKLKE  154 (176)
T ss_dssp             CSEETTEECCHHH
T ss_pred             cceeCCCcCCHHH
Confidence            8888888777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.53  E-value=1.8e-12  Score=134.88  Aligned_cols=322  Identities=13%  Similarity=0.139  Sum_probs=155.8

Q ss_pred             CcEEEccCCcccccCCccCCCCCCCCEEEcccCc---cccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315          196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ---LTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL  272 (693)
Q Consensus       196 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  272 (693)
                      |+++.+..+ ++.+...+|.++.+|+.+.+..+.   ++ .+....|.++.+|+.+.+..+ +..+....|..+.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            455555432 343444555555555555555442   33 455555555555555554432 344444555566666666


Q ss_pred             eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315          273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      .+..+ +.......|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+-.. ....+|..+.+++..........
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence            66433 22244445566666666666543 22233333432 45666665543322 33445666666666655444332


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315          353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC  432 (693)
Q Consensus       353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  432 (693)
                      ......+......           ......+.....+..+.+... +......+|.++..|+.+.+..+... ....+|.
T Consensus       219 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~  285 (394)
T 4gt6_A          219 AIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM  285 (394)
T ss_dssp             BSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred             cccceeecccccc-----------cccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccc
Confidence            1111100000000           000001112223333333322 22233445666666666666544332 4445566


Q ss_pred             CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315          433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS  512 (693)
Q Consensus       433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  512 (693)
                      ++++|+.+.+. +.+..+...+|..+                                                     .
T Consensus       286 ~c~~L~~i~l~-~~i~~I~~~aF~~c-----------------------------------------------------~  311 (394)
T 4gt6_A          286 NCPALQDIEFS-SRITELPESVFAGC-----------------------------------------------------I  311 (394)
T ss_dssp             TCTTCCEEECC-TTCCEECTTTTTTC-----------------------------------------------------T
T ss_pred             cccccccccCC-CcccccCceeecCC-----------------------------------------------------C
Confidence            66666666664 33444444455442                                                     2


Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++....   ..+.....|+.+.+.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA  386 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence            5666666543 44455567777777887777543 666667778888888888887776542   345566677777666


Q ss_pred             CCcC
Q 037315          593 YNNL  596 (693)
Q Consensus       593 ~N~l  596 (693)
                      .|.+
T Consensus       387 ~~~~  390 (394)
T 4gt6_A          387 PGSI  390 (394)
T ss_dssp             ----
T ss_pred             CCCE
Confidence            5543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2e-14  Score=131.30  Aligned_cols=135  Identities=21%  Similarity=0.184  Sum_probs=110.8

Q ss_pred             cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccc
Q 037315          382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH  461 (693)
Q Consensus       382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~  461 (693)
                      .+..+++|++|++++|.++. ++......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..|..    
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----   86 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----   86 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH----
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc----
Confidence            56778899999999999984 454334345999999999999965  67889999999999999998776554444    


Q ss_pred             cccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCch--hhccCCCCC
Q 037315          462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP--QVGNLTRIQ  539 (693)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~  539 (693)
                                                                       +++|++|++++|++.. +|.  .+..+++|+
T Consensus        87 -------------------------------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           87 -------------------------------------------------LPDLTELILTNNSLVE-LGDLDPLASLKSLT  116 (176)
T ss_dssp             -------------------------------------------------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCC
T ss_pred             -------------------------------------------------CCCCCEEECCCCcCCc-chhhHhhhcCCCCC
Confidence                                                             5689999999999974 454  788999999


Q ss_pred             eeeCCCccCCccCcc---cccCCCCCCEEeCCCcccc
Q 037315          540 TLNLSHNNLTGLIPS---TFSNLKQIESLDLSYNKLN  573 (693)
Q Consensus       540 ~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~  573 (693)
                      +|++++|.++...+.   .+..+++|+.||+++|.+.
T Consensus       117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999866433   4889999999999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=3.7e-14  Score=128.37  Aligned_cols=109  Identities=25%  Similarity=0.281  Sum_probs=77.3

Q ss_pred             cceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCC
Q 037315          514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAY  593 (693)
Q Consensus       514 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  593 (693)
                      .+.+++++|+++. +|..+  .++|++|+|++|+++++.|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4567777777764 44444  26777777777777777777777777777777777777766666667777777777777


Q ss_pred             CcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315          594 NNLSGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       594 N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      |++++..+..+..+.++..+++++||+.|+|+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            77776666656667777777777777777764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=8.9e-14  Score=125.84  Aligned_cols=91  Identities=25%  Similarity=0.267  Sum_probs=85.5

Q ss_pred             cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315          512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV  591 (693)
Q Consensus       512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  591 (693)
                      +++++|+|++|++++..|..|..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            46899999999999998999999999999999999999998889999999999999999999888888999999999999


Q ss_pred             CCCcCcccCCC
Q 037315          592 AYNNLSGEIPE  602 (693)
Q Consensus       592 ~~N~l~~~~p~  602 (693)
                      ++|+++|.+++
T Consensus       110 ~~N~~~c~c~~  120 (170)
T 3g39_A          110 LNNPWDCACSD  120 (170)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCCCCCchh
Confidence            99999987653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1e-13  Score=125.81  Aligned_cols=108  Identities=20%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             ceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCC
Q 037315          515 SGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN  594 (693)
Q Consensus       515 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  594 (693)
                      +.+++++|++. .+|..+.  ++|++|+|++|++++++|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666664 3344332  56666666666666666666666666666666666666555555566666666666666


Q ss_pred             cCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315          595 NLSGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       595 ~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      ++++..+..+..+.++..+++++|++.|+|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            6665544445556666666666666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=3.6e-16  Score=146.03  Aligned_cols=156  Identities=24%  Similarity=0.311  Sum_probs=122.3

Q ss_pred             ccCCCCCcEEeCcCcccCCCcch------hhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315          383 FFNCSSLVTLDLSYNLLNGSIPD------WIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFD  456 (693)
Q Consensus       383 ~~~~~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  456 (693)
                      +...+.++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|++..+ |..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhh
Confidence            34456667777777777666555      88899999999999999986 55 788899999999999988743 32222


Q ss_pred             cCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCC
Q 037315          457 NTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLT  536 (693)
Q Consensus       457 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  536 (693)
                      .                                                     +++|++|++++|++++. | .+..++
T Consensus        91 ~-----------------------------------------------------~~~L~~L~L~~N~l~~l-~-~~~~l~  115 (198)
T 1ds9_A           91 V-----------------------------------------------------ADTLEELWISYNQIASL-S-GIEKLV  115 (198)
T ss_dssp             H-----------------------------------------------------HHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred             c-----------------------------------------------------CCcCCEEECcCCcCCcC-C-ccccCC
Confidence            1                                                     45799999999999863 4 688899


Q ss_pred             CCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCCcc----------cccCCCCCEEecCCCcCcc
Q 037315          537 RIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIPHQ----------LVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~l~~N~l~~  598 (693)
                      +|++|++++|++++..+ ..+..+++|++|++++|++.+..|..          +..+++|+.||  +|+++.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999999999987644 57889999999999999998765543          78889999887  677653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.47  E-value=1.2e-11  Score=128.78  Aligned_cols=136  Identities=10%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             cCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315          378 LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN  457 (693)
Q Consensus       378 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  457 (693)
                      +...+|.+|..|+.+.+.++... +...+|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+|..
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            34447888888888888765443 556678888888888885 4566566777888888888888754 55566666665


Q ss_pred             CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCC
Q 037315          458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTR  537 (693)
Q Consensus       458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  537 (693)
                      +                                                     .+|+.+.+..+ ++.+...+|.++++
T Consensus       333 C-----------------------------------------------------~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          333 C-----------------------------------------------------EQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             C-----------------------------------------------------TTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             C-----------------------------------------------------CCCCEEEECcc-cCEEhHhHhhCCCC
Confidence            3                                                     37888888654 66566778999999


Q ss_pred             CCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315          538 IQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN  573 (693)
Q Consensus       538 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  573 (693)
                      |+.+++.++...   ...|...++|+.+.+..|.+.
T Consensus       359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             CCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            999999887654   256777888998888777653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.9e-13  Score=122.81  Aligned_cols=90  Identities=26%  Similarity=0.270  Sum_probs=84.2

Q ss_pred             cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315          512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV  591 (693)
Q Consensus       512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  591 (693)
                      ++|++|+|++|++.+..|..|..+++|++|+|++|+++++++..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            47999999999999998999999999999999999999998888999999999999999999877777999999999999


Q ss_pred             CCCcCcccCC
Q 037315          592 AYNNLSGEIP  601 (693)
Q Consensus       592 ~~N~l~~~~p  601 (693)
                      ++|++.+..+
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999998655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=2.1e-15  Score=140.71  Aligned_cols=138  Identities=22%  Similarity=0.256  Sum_probs=117.4

Q ss_pred             hhCCCCCCEEEccCCcccccCCc------ccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhh
Q 037315          407 IDGLSQLSHLILGNNNLEGEVPV------QLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSI  480 (693)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  480 (693)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|++.++ | .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-cccc-----------------------
Confidence            55667888888888888877766      889999999999999999873 3 4433                       


Q ss_pred             cccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCC
Q 037315          481 KGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLK  560 (693)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  560 (693)
                                                    +++|+.|++++|++. .+|..+..+++|++|++++|+++++ | .+..++
T Consensus        69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~  115 (198)
T 1ds9_A           69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV  115 (198)
T ss_dssp             ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred             ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence                                          568999999999998 5677888889999999999999986 4 688999


Q ss_pred             CCCEEeCCCccccccCC-cccccCCCCCEEecCCCcCcccCCC
Q 037315          561 QIESLDLSYNKLNGKIP-HQLVELKELAVFSVAYNNLSGEIPE  602 (693)
Q Consensus       561 ~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~p~  602 (693)
                      +|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999999986443 5788999999999999999988765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=1.4e-12  Score=133.44  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=91.4

Q ss_pred             ccCcceEECCC-CcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315          511 LSLLSGLDLSC-NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF  589 (693)
Q Consensus       511 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  589 (693)
                      +++|+.|+|++ |.+.+..+..|.++++|++|+|++|+|++++|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            44799999996 999988888899999999999999999999999999999999999999999977777776666 9999


Q ss_pred             ecCCCcCcccCC-CCccccCcCCcccccCccCCCCCCC
Q 037315          590 SVAYNNLSGEIP-EWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       590 ~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      ++++|++.|.++ .|+..+.......+..+.+.|..+.
T Consensus       109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A          109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence            999999987654 3333343334444556777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=3.3e-12  Score=130.70  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=97.9

Q ss_pred             ceEECCCC-cccccCchhhccCCCCCeeeCCC-ccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          515 SGLDLSCN-KLIGHIPPQVGNLTRIQTLNLSH-NNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       515 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      ..++++++ ++++ +|. +..+++|++|+|++ |.++++++..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45789988 8884 677 99999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315          593 YNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       593 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      +|+|++..+..+..+. +..+.+.+|++.|+|++
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999977666655444 89999999999999964

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.30  E-value=6.9e-10  Score=114.82  Aligned_cols=145  Identities=11%  Similarity=0.102  Sum_probs=89.0

Q ss_pred             cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccc
Q 037315          382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH  461 (693)
Q Consensus       382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~  461 (693)
                      .+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +..+...+|..    
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~----  284 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG----  284 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT----
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc----
Confidence            5555666666666544 22244455666667777766554 44455556666777777766543 33344444443    


Q ss_pred             cccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCee
Q 037315          462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTL  541 (693)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  541 (693)
                                                                       ..+|+.+++.++.++.+....|.++++|+.+
T Consensus       285 -------------------------------------------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          285 -------------------------------------------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             -------------------------------------------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             -------------------------------------------------ccccccccccccccceehhhhhcCCCCCCEE
Confidence                                                             3367777777666666666677777777777


Q ss_pred             eCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCC
Q 037315          542 NLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELK  584 (693)
Q Consensus       542 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  584 (693)
                      +|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+.+
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            77643 66666677777777777777654 5545555665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.29  E-value=3.7e-10  Score=116.92  Aligned_cols=298  Identities=10%  Similarity=0.067  Sum_probs=150.1

Q ss_pred             CCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeE
Q 037315          193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL  272 (693)
Q Consensus       193 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  272 (693)
                      ..+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++..+|.++ +|+.+.+..+ +..+....|... +|+.+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i  118 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF  118 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence            35677777754 355566667777777777777643 44 6666666655 5666655432 333333444332 56666


Q ss_pred             eccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCC
Q 037315          273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       273 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      .+..+ +......+|..+ +++...+..+ ++.....                        +|..+..++...+..+...
T Consensus       119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~------------------------~f~~~~~l~~~~~~~~~~~  171 (379)
T 4h09_A          119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDG------------------------IGYKAENLEKIEVSSNNKN  171 (379)
T ss_dssp             ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSC------------------------TTTTCTTCCEEEECTTCSS
T ss_pred             cCCCc-cccccccccccc-eeeeeeccce-eeccccc------------------------hhcccccccccccccccce
Confidence            55443 221222333332 3333333322 1112223                        3444444444444332211


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC
Q 037315          353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC  432 (693)
Q Consensus       353 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  432 (693)
                      .........        ...    ......+..+..+....+...... ....++..+.+|+.+.+..+ +......+|.
T Consensus       172 ~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~  237 (379)
T 4h09_A          172 YVAENYVLY--------NKN----KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFY  237 (379)
T ss_dssp             EEEETTEEE--------ETT----SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTT
T ss_pred             eecccceec--------ccc----cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEcccccc
Confidence            000000000        000    000013334445555555443222 33445566666776666544 3334455566


Q ss_pred             CCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeecccccc
Q 037315          433 GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLS  512 (693)
Q Consensus       433 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  512 (693)
                      ++..|+.+.+..+ ++.+...+|..                                                     ..
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~-----------------------------------------------------~~  263 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQN-----------------------------------------------------CT  263 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTT-----------------------------------------------------CT
T ss_pred             CCccceEEEcCCC-ccEeCccccce-----------------------------------------------------ee
Confidence            6677777766554 44444444443                                                     22


Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +|+.+.+..+ +.......|.++++|+.+.+.++.++.+.+.+|.++++|+.++|..+ ++.+...+|.++++|+.+.+.
T Consensus       264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            4555555433 44344556667777777777666666666667777777777777544 554555666677777766664


Q ss_pred             C
Q 037315          593 Y  593 (693)
Q Consensus       593 ~  593 (693)
                      .
T Consensus       342 ~  342 (379)
T 4h09_A          342 K  342 (379)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=3.3e-13  Score=138.31  Aligned_cols=161  Identities=20%  Similarity=0.137  Sum_probs=81.2

Q ss_pred             CCCCCEEEccCCcccccCCCC----CC-CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccC----
Q 037315          144 NTKLRQLSLVNDSLAGPFRLP----IH-SHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSF----  214 (693)
Q Consensus       144 ~~~L~~L~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----  214 (693)
                      .+.|++|++++|.++......    +. ..++|++|++++|.+++.....+...+++|++|+|++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356667777776665432221    11 225677777777776543334444445567777777776654333222    


Q ss_pred             -CCCCCCCEEEcccCccccccchHH---hhCCCCCcEEEcccccccccc----CccCCCCCCCCeEeccCccccccC---
Q 037315          215 -GNMNLLQILDLSNNQLTGEIPEHL---AMGCVNLEFLALSNNSLKGHM----FSRNFNLINLRWLQLEGNHFVGEI---  283 (693)
Q Consensus       215 -~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~---  283 (693)
                       ...++|++|+|++|.+++.....+   ...+++|++|++++|.+.+..    ...+...++|++|+|++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             234566777777766652111111   123556666666666655422    222334445555555555554321   


Q ss_pred             -CcCCcCCCCCCEEeccCCccc
Q 037315          284 -PQSLSKCSSLEGLYLNNNSLS  304 (693)
Q Consensus       284 -~~~l~~l~~L~~L~L~~n~i~  304 (693)
                       ...+...++|++|++++|.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence             112223344555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=7.7e-13  Score=135.56  Aligned_cols=135  Identities=19%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             CCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccC-----CCCCCCCeEeccCcccccc----CCcCCc
Q 037315          218 NLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRN-----FNLINLRWLQLEGNHFVGE----IPQSLS  288 (693)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~  288 (693)
                      ++|++|+|++|.+.+.....+...+++|++|++++|.++......+     ...++|++|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3455555555544422222222234455555555555543322222     1235566666666655431    222334


Q ss_pred             CCCCCCEEeccCCcccccC----CccccCCCCCcEEEccCCccccCc----cccccCCCCCCEEECcCCcCC
Q 037315          289 KCSSLEGLYLNNNSLSGKI----PRWLGNLTWLIHIIMPKNHLEGPI----PVEFCHLYSLQILDISDNNIS  352 (693)
Q Consensus       289 ~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~  352 (693)
                      .+++|++|++++|.+++..    +..+...++|++|++++|.+....    +..+...++|++|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            4566666666666655322    334445556666666666665322    223344566777777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=2.3e-09  Score=108.60  Aligned_cols=163  Identities=17%  Similarity=0.115  Sum_probs=96.4

Q ss_pred             cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccC--CCCCCCEEEccCC--cCcccCCCCccc
Q 037315          382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLC--GLNQLQLLDLSNN--NLHGLIPPCFDN  457 (693)
Q Consensus       382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~~~~~~~~~~~~  457 (693)
                      .+..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.......+.  .+|+|+.|+|+.+  ...+..  .+..
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~  241 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNV  241 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHH
Confidence            4566788888888877311 1222 33 78899999888887654444443  6888998888532  111100  0000


Q ss_pred             CccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhc---c
Q 037315          458 TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVG---N  534 (693)
Q Consensus       458 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~  534 (693)
                      ..                                            ....+..+++|++|+|.+|.+.+..+..+.   .
T Consensus       242 l~--------------------------------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~  277 (362)
T 2ra8_A          242 FR--------------------------------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI  277 (362)
T ss_dssp             TG--------------------------------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred             HH--------------------------------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence            00                                            001112266788888888887654433333   4


Q ss_pred             CCCCCeeeCCCccCCccC----cccccCCCCCCEEeCCCccccccCCccccc-CCCCCEEecCCCc
Q 037315          535 LTRIQTLNLSHNNLTGLI----PSTFSNLKQIESLDLSYNKLNGKIPHQLVE-LKELAVFSVAYNN  595 (693)
Q Consensus       535 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~l~~N~  595 (693)
                      +++|++|+|+.|.+++..    +..+..+++|+.|+|++|.++...-..+.. +  ...+++++++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            678888888888877642    233455678888888888776443333332 2  3456777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=1.7e-08  Score=102.30  Aligned_cols=138  Identities=14%  Similarity=0.159  Sum_probs=75.3

Q ss_pred             hcCCCCCCEEEccCcccc---------ccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCC
Q 037315          116 LYYQHDLEDVHFSRIQMN---------GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIP  186 (693)
Q Consensus       116 l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  186 (693)
                      ...+++|+.|.+......         +.+. .++..+|+|++|.++++.-. ..+ .+ .+++|++|++..+.+.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~-~~-~~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIG-KK-PRPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCC-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eec-cc-cCCCCcEEEEecCCCChHHH
Confidence            445678888877654221         1222 33467888888888876311 111 23 36788888888877653333


Q ss_pred             hhhh-hcCCCCcEEEccCC--ccccc-----CCccC--CCCCCCCEEEcccCccccccchHHhh--CCCCCcEEEccccc
Q 037315          187 VEIG-DILPRLISFNISMN--ALDGS-----IPSSF--GNMNLLQILDLSNNQLTGEIPEHLAM--GCVNLEFLALSNNS  254 (693)
Q Consensus       187 ~~~~-~~l~~L~~L~L~~n--~i~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~  254 (693)
                      ..+. ..+|+|++|+|+.+  ...+.     +...+  ..+++|++|++.+|.+.+..+..++.  .+++|++|+++.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            3333 13788888887532  11100     11112  24667777777777665433333332  24556666666555


Q ss_pred             ccc
Q 037315          255 LKG  257 (693)
Q Consensus       255 l~~  257 (693)
                      +.+
T Consensus       291 L~d  293 (362)
T 2ra8_A          291 LTD  293 (362)
T ss_dssp             CBH
T ss_pred             CCh
Confidence            554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.32  E-value=9.6e-08  Score=87.16  Aligned_cols=42  Identities=12%  Similarity=0.075  Sum_probs=19.1

Q ss_pred             hhCCCCCCEEEccCC-ccccc----CCcccCCCCCCCEEEccCCcCc
Q 037315          407 IDGLSQLSHLILGNN-NLEGE----VPVQLCGLNQLQLLDLSNNNLH  448 (693)
Q Consensus       407 ~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~  448 (693)
                      +...++|++|+|++| .+...    +...+...++|++|+|++|.+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            344445555555554 44321    1222344455555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=5.8e-07  Score=86.03  Aligned_cols=62  Identities=31%  Similarity=0.374  Sum_probs=27.7

Q ss_pred             ccCcceEECCCCccccc--CchhhccCCCCCeeeCCCccCCccCcccccCCC--CCCEEeCCCccccc
Q 037315          511 LSLLSGLDLSCNKLIGH--IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLK--QIESLDLSYNKLNG  574 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~  574 (693)
                      +++|+.|+|++|++.+.  +|..+..+++|+.|+|++|++++.  ..+..++  +|++|+|++|++.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            34455555555555442  223344455555555555555443  1122222  45555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=3.1e-07  Score=83.72  Aligned_cols=115  Identities=13%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             hcCCCCCEEEccCC-ccccc----CCCCCCCCCCCCEEEccCCcCcccCChhhhh---cCCCCcEEEccCCccccc----
Q 037315          142 ENNTKLRQLSLVND-SLAGP----FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD---ILPRLISFNISMNALDGS----  209 (693)
Q Consensus       142 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~----  209 (693)
                      ...+.|++|++++| .+...    +...+...++|++|++++|.+.+.....+++   ..++|++|+|++|.|++.    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            34455555555555 44432    1222344556666666666655322222221   134566666666666532    


Q ss_pred             CCccCCCCCCCCEEEc--ccCccccccchHH---hhCCCCCcEEEccccccc
Q 037315          210 IPSSFGNMNLLQILDL--SNNQLTGEIPEHL---AMGCVNLEFLALSNNSLK  256 (693)
Q Consensus       210 ~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~  256 (693)
                      +...+...+.|++|++  ++|.+.+.....+   ....++|++|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2334555566777777  6666653322111   123456666666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=4.2e-07  Score=87.05  Aligned_cols=84  Identities=25%  Similarity=0.320  Sum_probs=65.2

Q ss_pred             EECCCCccc---ccCchhhccCCCCCeeeCCCccCCccC--cccccCCCCCCEEeCCCccccccCCcccccCC--CCCEE
Q 037315          517 LDLSCNKLI---GHIPPQVGNLTRIQTLNLSHNNLTGLI--PSTFSNLKQIESLDLSYNKLNGKIPHQLVELK--ELAVF  589 (693)
Q Consensus       517 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L  589 (693)
                      ++++.|...   ...+....++++|++|+|++|+++++.  |..+..+++|+.|+|++|++.+.  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            677777433   222233367899999999999999853  46677899999999999999865  3455555  99999


Q ss_pred             ecCCCcCcccCCC
Q 037315          590 SVAYNNLSGEIPE  602 (693)
Q Consensus       590 ~l~~N~l~~~~p~  602 (693)
                      ++++|++.+..|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999987763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.10  E-value=4.4e-07  Score=80.29  Aligned_cols=83  Identities=11%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCcc-CCccCcccccCC----CCCCEEeCCCcc-ccccCCcccccCCCC
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNL----KQIESLDLSYNK-LNGKIPHQLVELKEL  586 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~L  586 (693)
                      .|++||+++|.++...-..+..+++|++|+|++|. +++..-..+..+    ++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            69999999999987777778999999999999995 775444555554    479999999986 776555677889999


Q ss_pred             CEEecCCCc
Q 037315          587 AVFSVAYNN  595 (693)
Q Consensus       587 ~~L~l~~N~  595 (693)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999996

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=2.1e-06  Score=75.87  Aligned_cols=84  Identities=8%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             CCcEEEccCCcccccCCccCCCCCCCCEEEcccCc-cccccchHHhhC---CCCCcEEEccccc-cccccCccCCCCCCC
Q 037315          195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQ-LTGEIPEHLAMG---CVNLEFLALSNNS-LKGHMFSRNFNLINL  269 (693)
Q Consensus       195 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~---l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  269 (693)
                      +|++|++++|.++...-..+..+++|++|+|++|. +++..-..+...   +++|++|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            57777777777766555566777777777777774 443222223210   2357777777764 555444445556666


Q ss_pred             CeEeccCcc
Q 037315          270 RWLQLEGNH  278 (693)
Q Consensus       270 ~~L~L~~n~  278 (693)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.89  E-value=1.1e-05  Score=68.10  Aligned_cols=98  Identities=18%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             CeeeCCCccCC--ccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCC-CccccCcCCcccc
Q 037315          539 QTLNLSHNNLT--GLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPE-WKAQFATFNENSY  615 (693)
Q Consensus       539 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~l~~~~~  615 (693)
                      ..++.+++.++  .+ |..+.  ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.+.... |+..+..      
T Consensus        11 ~~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~------   81 (130)
T 3rfe_A           11 TLVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA------   81 (130)
T ss_dssp             TEEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH------
T ss_pred             CEEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH------
Confidence            47888999987  44 54432  4699999999999988888889999999999999998875431 1111111      


Q ss_pred             cCccCCCCCCCCCCCCCCCCCccccccccCC
Q 037315          616 EGNTFLCGLPLPICRSPTTMSEASIENERDD  646 (693)
Q Consensus       616 ~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~  646 (693)
                       .++..-......|..|....+..+..+..+
T Consensus        82 -~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~  111 (130)
T 3rfe_A           82 -GRPERAPYRDLRCVAPPALRGRLLPYLAED  111 (130)
T ss_dssp             -TSSCSGGGTTCBCCBSTTTTTCBGGGCCHH
T ss_pred             -hCcccccccCcEeCcChHHcCCCcccCCHH
Confidence             110000011235777877777666555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.19  E-value=0.0007  Score=56.96  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=43.9

Q ss_pred             ceEECCCCccc-ccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCcccc
Q 037315          515 SGLDLSCNKLI-GHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN  573 (693)
Q Consensus       515 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  573 (693)
                      ..++.++++++ ..+|..+.  ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46888888876 24454332  36888899999988888888888888999999988875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.00  E-value=0.00025  Score=63.94  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             hccCCCCCCEEECCCC-CCCC----cCCccccCCCCCCCEEECCCCcCcCcCC---cccccCCCCCcEEEccCCcccccc
Q 037315           13 CLANMTSLRILDVSSN-QLTG----SISSSPLFYLTSIEELSLSNNHFHIPIS---LEPLFNHSRLKIFYADNNPINAKI   84 (693)
Q Consensus        13 ~~~~l~~L~~L~Ls~n-~l~~----~l~~~~~~~l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~   84 (693)
                      .+.+-+.|++|+|++| .|.+    .+.. ++..-+.|++|+|++|++.+..-   ...+..-+.|++|+|++|.|....
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            4455678888888875 7652    1333 45666788888888888853211   123445678888888888887665


Q ss_pred             ccccCCCCCC-ccccEEec
Q 037315           85 TKSHTLTTPK-FQLASLSL  102 (693)
Q Consensus        85 ~~~~~~~~~~-~~L~~L~L  102 (693)
                      ...+...+.. ..|++|+|
T Consensus       115 a~ala~aL~~N~tL~~L~L  133 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKA  133 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEEC
T ss_pred             HHHHHHHHhhCCceeEEEC
Confidence            5544433321 13444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.98  E-value=0.00041  Score=62.54  Aligned_cols=63  Identities=14%  Similarity=0.156  Sum_probs=27.4

Q ss_pred             CCCCCCCEEEccCCcCcccCChhhhh---cCCCCcEEEccCCccccc----CCccCCCCCCCCEEEcccC
Q 037315          166 HSHRHLRLLDVSNNNFQGHIPVEIGD---ILPRLISFNISMNALDGS----IPSSFGNMNLLQILDLSNN  228 (693)
Q Consensus       166 ~~~~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n  228 (693)
                      ...+.|++|+|++|.+.+.....+++   .-+.|++|+|++|.|+..    +.+++..-+.|++|+|+++
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            33445555555555544222222221   123455555555554421    1123444455666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	693
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-08
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (213), Expect = 2e-19
 Identities = 50/259 (19%), Positives = 82/259 (31%), Gaps = 4/259 (1%)

Query: 191 DILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLAL 250
            I        +  N +     +SF     L IL L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 251 SNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 310
            N  L+    +    L  L  L L+        P      ++L+ LYL +N+L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 311 LGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLS 370
             +L  L H+ +  N +       F  L+SL  L +  N ++   P  F  L        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 371 KNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQ 430
                  L         +L  L L+ N             + L      ++ +   +P +
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 431 LCGLNQLQLLDLSNNNLHG 449
           L G     L  L+ N+L G
Sbjct: 268 LAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 46/294 (15%), Positives = 80/294 (27%), Gaps = 36/294 (12%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWL-IHIIMPKNHLEGPIPVEFCHLYS 340
            +P  +   ++ + ++L+ N +S            L I  +                   
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 341 LQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
            Q+    +  +    P+ FH L              +L  G F   ++L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 401 GSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKL 460
               D    L  L+HL L  N +         GL+ L  L L  N +  + P  F +  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 461 HESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLS 520
                     +    +                                     L  L L+
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRA---------------------------LQYLRLN 233

Query: 521 CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574
            N  +     +      +Q    S + +   +P   +         L+ N L G
Sbjct: 234 DNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 43/242 (17%), Positives = 70/242 (28%), Gaps = 7/242 (2%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
                VT       L  ++P  I   +    + L  N +             L +L L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 445 NNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           N L  +    F    L E  + S +   +     +  G        +            +
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIES 564
                    L  L L  N L         +L  +  L L  N ++ +    F  L  ++ 
Sbjct: 126 RGLAA----LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 565 LDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGL 624
           L L  N++    PH   +L  L    +  NNLS    E  A            N ++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 625 PL 626
             
Sbjct: 242 RA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 49/293 (16%), Positives = 88/293 (30%), Gaps = 15/293 (5%)

Query: 13  CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKI 72
           C+               L     + P+    + + + L  N     +          L I
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ----AVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTI 60

Query: 73  FYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQM 132
            +  +N +      + T      QL     S +       P   +    L  +H  R  +
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDL---SDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 133 NGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI 192
               P         L+ L L +++L            +L  L +  N     +P      
Sbjct: 118 QELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRG 175

Query: 193 LPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
           L  L    +  N +    P +F ++  L  L L  N L+  +P         L++L L++
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

Query: 253 NSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG 305
           N       +R      L+  +   +     +PQ L+         L  N L G
Sbjct: 235 NPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (211), Expect = 7e-19
 Identities = 45/294 (15%), Positives = 85/294 (28%), Gaps = 20/294 (6%)

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
           ++P+ L        L L NN ++        NL  L  +I+  N +    P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           + L +S N +   LP                +   +       N   +V L  +    +G
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 402 SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH 461
                  G+ +LS++ + + N+     +       L  L L  N +  +           
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC 521
                S +                     ++E      K +           +  + L  
Sbjct: 198 AKLGLSFNSISAVDNGSL------ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 522 NKLIG------HIPPQVGNLTRIQTLNLSHNNLT--GLIPSTFSNLKQIESLDL 567
           N +          P           ++L  N +    + PSTF  +    ++ L
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.3 bits (207), Expect = 2e-18
 Identities = 49/270 (18%), Positives = 96/270 (35%), Gaps = 15/270 (5%)

Query: 162 RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQ 221
           ++P        LLD+ NN        +  + L  L +  +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 222 ILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVG 281
            L LS NQL  E+PE +      L         ++  +F+   N + +  L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSG 140

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
               +      L  + + + +++        +LT L    +  N +          L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNL 197

Query: 342 QILDISDNNISGSLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLN 400
             L +S N+IS            + ++HL+ N L     G    +   +  + L  N ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 401 G------SIPDWIDGLSQLSHLILGNNNLE 424
                    P +    +  S + L +N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 8/243 (3%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF 279
           L+++  S+  L  ++P+ L     +   L L NN +         NL NL  L L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 280 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLY 339
               P + +    LE LYL+ N L     +    L  L         +   +      + 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
            +++      +      +      ++ + ++   +    +G       SL  L L  N +
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----LPPSLTELHLDGNKI 183

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
                  + GL+ L+ L L  N++       L     L+ L L+NN L  +     D+  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 460 LHE 462
           +  
Sbjct: 244 IQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 9/217 (4%)

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
                LDL  N +          L  L  LIL NN +    P     L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
           L  L        +    + N      +   +     +  +    ++        +     
Sbjct: 91  LKELPEKMPKTLQELRVHEN------EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566
             + +  LS + ++   +   IP   G    +  L+L  N +T +  ++   L  +  L 
Sbjct: 145 AFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 567 LSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEW 603
           LS+N ++      L     L    +  N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 7e-11
 Identities = 40/264 (15%), Positives = 78/264 (29%), Gaps = 40/264 (15%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
              +LD+ +N I+      F  L      +  N    ++  G F     L  L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 400 NGSIPDWIDGLSQLSH-----------------------LILGNNNLEGEVPVQLCGLNQ 436
                     L +L                         L        G       G+ +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 437 LQLLDLSNNNLHGLIPPCFDN-TKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF 495
           L  + +++ N+  +      + T+LH   N  +  D       +     G     I    
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 496 EFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPST 555
             +  N  ++ +  +           N  +  +P  + +   IQ + L +NN++ +  + 
Sbjct: 212 NGSLANTPHLRELHL----------NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 556 F------SNLKQIESLDLSYNKLN 573
           F      +       + L  N + 
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 48/280 (17%), Positives = 86/280 (30%), Gaps = 21/280 (7%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
               +LD+ +N++T  I       L ++  L L NN     IS        +L+  Y   
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 88

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
           N +     K             L +  +    V    F      +     +    +    
Sbjct: 89  NQLKELPEKMPKTLQ------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI 197
           N   +   KL  + + + ++     +P      L  L +  N         +   L  L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKG-LNNLA 198

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKG 257
              +S N++      S  N   L+ L L+NN+L              ++ + L NN++  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISA 256

Query: 258 ------HMFSRNFNLINLRWLQLEGNHF-VGEIPQSLSKC 290
                      N    +   + L  N     EI  S  +C
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 52/292 (17%), Positives = 88/292 (30%), Gaps = 23/292 (7%)

Query: 19  SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNN 78
            LR++  S   L       P         L L NN     I      N   L      NN
Sbjct: 11  HLRVVQCSDLGLE----KVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINN 65

Query: 79  PINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPN 138
            I+     +        +L  L LS +    +        Q      +         F  
Sbjct: 66  KISKISPGAFAPLV---KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 139 WLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLIS 198
               N   + +L       +G         + L  + +++ N    IP     + P L  
Sbjct: 123 L---NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP---QGLPPSLTE 175

Query: 199 FNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGH 258
            ++  N +     +S   +N L  L LS N ++            +L  L L+NN L   
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKV 234

Query: 259 MFSRNFNLINLRWLQLEGNHF------VGEIPQSLSKCSSLEGLYLNNNSLS 304
                 +   ++ + L  N+           P   +K +S  G+ L +N + 
Sbjct: 235 PGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 25/106 (23%), Positives = 40/106 (37%)

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI 576
           LDL  NK+         NL  + TL L +N ++ + P  F+ L ++E L LS N+L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 577 PHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLC 622
                 L+EL V       +   +     Q       +    +   
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.4 bits (210), Expect = 2e-18
 Identities = 65/392 (16%), Positives = 117/392 (29%), Gaps = 41/392 (10%)

Query: 216 NMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLE 275
            +       L    +T  + +        +  L      +K         L NL  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 276 GNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEF 335
            N      P  L   + L  + +NNN ++   P         + +   +     P+    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 336 CHLYSLQIL-------------DISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT 382
                                  +   +    +       ++T +       +       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDL 442
               ++L +L  + N ++   P  I   + L  L L  N L+      L  L  L  LDL
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 443 SNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNI 502
           +NN +  L P     TKL E    +            I               E     +
Sbjct: 249 ANNQISNLAP-LSGLTKLTELKLGA----------NQISNISPLAGLTALTNLELNENQL 297

Query: 503 AYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQI 562
             I     L  L+ L L  N +    P  V +LT++Q L  ++N ++    S+ +NL  I
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 563 ESLDLSYNKLNGKIPHQLVELKELAVFSVAYN 594
             L   +N+++   P  L  L  +    +   
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.4 bits (202), Expect = 2e-17
 Identities = 63/361 (17%), Positives = 111/361 (30%), Gaps = 42/361 (11%)

Query: 14  LANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFN-----HS 68
             ++  +  L      +    S   + YL ++ +++ SNN       L+ L        +
Sbjct: 40  QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 96

Query: 69  RLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFS 128
             +I           +T           +  L   ++          +     L  +   
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 129 RIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVE 188
           +    G     L           L   S        +    +L  L  +NN      P+ 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 189 IGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFL 248
           I      L   +++ N L      +  ++  L  LDL+NNQ++   P     G   L  L
Sbjct: 217 IL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTEL 268

Query: 249 ALSNNSLKG--------------------HMFSRNFNLINLRWLQLEGNHFVGEIPQSLS 288
            L  N +                         S   NL NL +L L  N+     P  +S
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VS 326

Query: 289 KCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD 348
             + L+ L+  NN +S      L NLT +  +    N +    P    +L  +  L ++D
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 349 N 349
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 5e-17
 Identities = 63/359 (17%), Positives = 111/359 (30%), Gaps = 35/359 (9%)

Query: 212 SSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW 271
                +N L  ++ SNNQLT   P        NL  L     +            +    
Sbjct: 60  DGVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITPLANLTNLT 113

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPI 331
                N+ + +I    +  +       +N          L +L  L       +      
Sbjct: 114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL----- 168

Query: 332 PVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT 391
             +     +        +N    +       ++  +  + N +            ++L  
Sbjct: 169 --KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDE 223

Query: 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI 451
           L L+ N L       +  L+ L+ L L NN +    P  L GL +L  L L  N +  + 
Sbjct: 224 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 279

Query: 452 PPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVL 511
           P               ++          ++        K   +      NI+ I     L
Sbjct: 280 PLA-----------GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 328

Query: 512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
           + L  L  + NK+       + NLT I  L+  HN ++ L P   +NL +I  L L+  
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 5e-07
 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 24/205 (11%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPIS 60
             +N++    P     +T+L  L ++ NQL        L  LT++ +L L+NN      +
Sbjct: 204 ATNNQISDITPLG--ILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS---N 255

Query: 61  LEPLFNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQH 120
           L PL   ++L       N I+           P   L +L+      + +     +    
Sbjct: 256 LAPLSGLTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISPISNLK 307

Query: 121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNN 180
           +L  +      ++   P   + + TKL++L   N+ ++      + +  ++  L   +N 
Sbjct: 308 NLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQ 362

Query: 181 FQGHIPVEIGDILPRLISFNISMNA 205
                P+     L R+    ++  A
Sbjct: 363 ISDLTPLAN---LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 48/315 (15%), Positives = 101/315 (32%), Gaps = 36/315 (11%)

Query: 313 NLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKN 372
            L   +  ++ K ++   +      L  +  L      I  S+    +  ++TQ++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 373 MLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLS------HLILGNNNLEGE 426
            L          N + LV + ++ N +    P                   +        
Sbjct: 77  QLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 427 VPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGH 486
           +       N +  +   +           +     +   N ++ +        +      
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 487 VEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN 546
            +    E    T   I+ I    +L+ L  L L+ N+L       + +LT +  L+L++N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 547 NLTGLIPSTFSNLKQIESLDLSYNKLNGKIP--------------------HQLVELKEL 586
            ++ L P   S L ++  L L  N+++   P                      +  LK L
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 587 AVFSVAYNNLSGEIP 601
              ++ +NN+S   P
Sbjct: 310 TYLTLYFNNISDISP 324

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.5 bits (189), Expect = 5e-16
 Identities = 56/296 (18%), Positives = 102/296 (34%), Gaps = 34/296 (11%)

Query: 337 HLYSLQILDISDNNISG--SLPSCFHPLS-ITQVHLSKNMLHGQLKGGTFFNCSSLVTLD 393
             Y +  LD+S  N+     +PS    L  +  +++                 + L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 394 LSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPP 453
           +++  ++G+IPD++  +  L  L    N L G +P  +  L  L  +    N + G IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 454 CFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSL 513
                  + S++   +     +   + K         +                      
Sbjct: 168 S------YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLN 573
            +         +     +VG    +  L+L +N + G +P   + LK + SL++S+N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL- 280

Query: 574 GKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPIC 629
                                   GEIP+       F+ ++Y  N  LCG PLP C
Sbjct: 281 -----------------------CGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 57/265 (21%), Positives = 100/265 (37%), Gaps = 12/265 (4%)

Query: 312 GNLTWLIHIIMPKNHLEG--PIPVEFCHLYSLQILDISD--NNISGSLPSCFHPLSITQV 367
                + ++ +   +L    PIP    +L  L  L I    N +    P+      +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 368 HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV 427
           +++   + G           +LVTLD SYN L+G++P  I  L  L  +    N + G +
Sbjct: 107 YITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 428 PVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHV 487
           P      ++L      + N      P           + S +  E               
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS------VLFGS 219

Query: 488 EKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN 547
           +K  Q+           + +  +   L+GLDL  N++ G +P  +  L  + +LN+S NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 548 LTGLIPSTFSNLKQIESLDLSYNKL 572
           L G IP    NL++ +    + NK 
Sbjct: 280 LCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 3/249 (1%)

Query: 124 DVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQG 183
           D+    +      P+ L  N   L  L +   +       P  +           +    
Sbjct: 56  DLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 184 HIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCV 243
               +    +  L++ + S NAL G++P S  ++  L  +    N+++G IP+       
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
               + +S N L G +     NL                     S  +          + 
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN--TQKIHLAKNS 232

Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
                  +G    L  + +  N + G +P     L  L  L++S NN+ G +P   +   
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292

Query: 364 ITQVHLSKN 372
                 + N
Sbjct: 293 FDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 3e-10
 Identities = 35/263 (13%), Positives = 73/263 (27%), Gaps = 22/263 (8%)

Query: 13  CLANMTSLRI--LDVSSNQLTGSISSSP-LFYLTSIEELSLSNNHFHIPISLEPLFNHSR 69
           C  +  + R+  LD+S   L         L  L  +  L +   +  +      +   ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 70  LKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQ-HDLEDVHFS 128
           L   Y  +  ++  I    +       L     + S     +            +    S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 129 RIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLD------------- 175
               +       L  +  + +  L          L +      R +              
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 176 ---VSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTG 232
              +          +    +   L   ++  N + G++P     +  L  L++S N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 233 EIPEHLAMGCVNLEFLALSNNSL 255
           EIP+         +  A +NN  
Sbjct: 283 EIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1   MADNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF 55
           + +N + G+LP  L  +  L  L+VS N L G I       L   +  + +NN  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 48/295 (16%), Positives = 94/295 (31%), Gaps = 24/295 (8%)

Query: 174 LDVSNNNFQGHIPVEIGDILPR-LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTG 232
           LD++  N    +    G +L + +I+F    + +D  +   F    + Q +DLSN+ +  
Sbjct: 5   LDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEV 60

Query: 233 EIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSS 292
                +   C  L+ L+L    L   + +      NL  L L G     E        S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 293 LEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNIS 352
                LN +       + +      +   + + +L G          S            
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS------------ 168

Query: 353 GSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSY-NLLNGSIPDWIDGLS 411
                     ++  + LS +++        FF  + L  L LS    +       +  + 
Sbjct: 169 ---TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 412 QLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNN 466
            L  L +     +G + +       L  L ++ ++   +  P   N K  E +  
Sbjct: 226 TLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 32/253 (12%), Positives = 82/253 (32%), Gaps = 8/253 (3%)

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           Q LD++  N+   +        +      ++ +   L     F+   +  +DLS +++  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEV 60

Query: 402 -SIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKL 460
            ++   +   S+L +L L    L   +   L   + L  L+LS  +           +  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 461 H----ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSG 516
                 + +      E+   +      +   +  +  + +   K+       +  +L+  
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 517 LDLSCNKLIGHIPPQVGNLTRIQTLNLSH-NNLTGLIPSTFSNLKQIESLDLSYNKLNGK 575
                  L      +   L  +Q L+LS   ++          +  +++L +     +G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 576 IPHQLVELKELAV 588
           +      L  L +
Sbjct: 241 LQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 37/243 (15%), Positives = 74/243 (30%), Gaps = 8/243 (3%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
            +       + +   L   F P  +  + LS +++      G    CS L  L L    L
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
           +  I + +   S L  L L   +   E  +Q    +  +L +L+ +              
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGK----VLSLLS 515
            H S   +      ++           V +         + ++            L+ L 
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 516 GLDLS-CNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNG 574
            L LS C  +I     ++G +  ++TL +      G +      L     L ++ +    
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTT 260

Query: 575 KIP 577
              
Sbjct: 261 IAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 31/254 (12%), Positives = 75/254 (29%), Gaps = 12/254 (4%)

Query: 127 FSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIP 186
            +   ++ +    LL       +                 S   ++ +D+SN+  +    
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVSTL 63

Query: 187 VEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDL-SNNQLTGEIPEHLAMGCVNL 245
             I     +L + ++    L   I ++    + L  L+L   +  +    + L   C  L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 246 EFLALSNNSLKGHMFSRNFNLINLRWLQ-------LEGNHFVGEIPQSLSKCSSLEGLYL 298
           + L LS          +         +         +               + +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 299 NNNSLSGKIPRWLGNLTWLIHIIMPK-NHLEGPIPVEFCHLYSLQILDISDNNISGSLPS 357
           ++  L     +    L +L H+ + +   +     +E   + +L+ L +      G+L  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 358 CFHPLSITQVHLSK 371
               L   Q++ S 
Sbjct: 244 LKEALPHLQINCSH 257

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (151), Expect = 5e-11
 Identities = 58/448 (12%), Positives = 118/448 (26%), Gaps = 33/448 (7%)

Query: 171 LRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDG----SIPSSFGNMNLLQILDLS 226
           ++ LD+           E+  +L +     +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 227 NNQLTGEIPEHLAMG----CVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGE 282
           +N+L       +  G       ++ L+L N  L G       + +       E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 283 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQ 342
           +  +  +      L         ++     +      +            +   +    +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 343 ILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS 402
                        P     L +    ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 403 IPDWIDGLSQLSHLIL-------GNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCF 455
                  L   S L               G++   L     L+ L L+ N L        
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 456 DNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQG------- 508
             T L       S   +      +   H   V  + +   E    N      G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 509 --KVLSLLSGLDLSCNKL----IGHIPPQVGNLTRIQTLNLSHNNLTG-----LIPSTFS 557
             +  S+L  L L+   +       +   +     ++ L+LS+N L       L+ S   
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 558 NLKQIESLDLSYNKLNGKIPHQLVELKE 585
               +E L L     + ++  +L  L++
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 56/448 (12%), Positives = 109/448 (24%), Gaps = 21/448 (4%)

Query: 19  SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF---HIPISLEPLFNHSRLKIFYA 75
            ++ LD+   +L+ +  +  L  L   + + L +              L  +  L     
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 76  DNNPINAKITKS--HTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMN 133
            +N +           L TP  ++  LSL +    G            L  +    +  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 134 GEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL 193
                              + D      +L +              +     P      +
Sbjct: 123 LLGDAG------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 194 PRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNN 253
                    +  L   +  S   +  L++               +     +L  LAL +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 254 SLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 313
            L     +     +     +L           +   C  L  +     SL          
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNEL 295

Query: 314 LTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNM 373
                 ++       G                   +  S    + F        +  ++ 
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 374 LHGQLKGGTFFNCSSLVTLDLSYNLLNG----SIPDWIDGLSQLSHLILGNNNLEGEVPV 429
              +L  G     S L  L L+   ++     S+   +     L  L L NN L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 430 QLCG-----LNQLQLLDLSNNNLHGLIP 452
           QL          L+ L L +      + 
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 514 LSGLDLSCNKLIGHIPPQV-GNLTRIQTLNLSHNNLTG----LIPSTFSNLKQIESLDLS 568
           +  LD+ C +L      ++   L + Q + L    LT      I S       +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 569 YNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEW 603
            N+L     H +++  +     +   +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 48/417 (11%), Positives = 97/417 (23%), Gaps = 24/417 (5%)

Query: 9   SLPWCLANMTSLRILDVSSNQLTG----SISSSPLFYLTSIEELSLSNNHFHIPISLEPL 64
            +   L    +L  L++ SN+L       +          I++LSL N            
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105

Query: 65  FNHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLED 124
                L      +   N        L           L     +  +             
Sbjct: 106 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 165

Query: 125 VHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGH 184
                 +      N + E   ++              +        L+L      +    
Sbjct: 166 RAKPDFKELTVSNNDINEAGVRVLC---------QGLKDSPCQLEALKLESCGVTSDNCR 216

Query: 185 IPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVN 244
               I      L    +  N L     +      L     L    +          G + 
Sbjct: 217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 276

Query: 245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304
               A  +        +   +       +             +  CS       + +S+ 
Sbjct: 277 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 336

Query: 305 GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISG----SLPSCFH 360
            +    L     + +  +    +             L++L ++D ++S     SL +   
Sbjct: 337 AQNRFLLEL--QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 394

Query: 361 PL-SITQVHLSKNMLHGQ----LKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQ 412
              S+ ++ LS N L       L          L  L L     +  + D +  L +
Sbjct: 395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 388 SLVTLDLSYNLLNGS-IPDWIDGLSQLSHLILGNNNLEGEVPVQLC----GLNQLQLLDL 442
            + +LD+    L+ +   + +  L Q   + L +  L       +         L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 443 SNNNLHGLIPPCF 455
            +N L  +   C 
Sbjct: 63  RSNELGDVGVHCV 75

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 40/236 (16%), Positives = 64/236 (27%), Gaps = 32/236 (13%)

Query: 213 SFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL 272
               +     ++     LT  +P  L     +   L LS N L                 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLY---------------- 44

Query: 273 QLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIP 332
                        +L   + L  L L+   L+         +   + +   +      + 
Sbjct: 45  --------TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96

Query: 333 VEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTL 392
                L  L    +S N ++         L   Q    K      L  G       L  L
Sbjct: 97  QTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 393 DLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH 448
            L+ N L       ++GL  L  L+L  N+L   +P    G + L    L  N   
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 34/187 (18%), Positives = 55/187 (29%), Gaps = 9/187 (4%)

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
                L LS NLL       +   ++L+ L L           +L     L +L   + +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----LTKLQVDGTLPVLGTLDLS 85

Query: 447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
            + L         L        S +    +        G +++   +  E  T     + 
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566
               L     L L+ N L       +  L  + TL L  N+L   IP  F     +    
Sbjct: 146 PTPKLEK---LSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

Query: 567 LSYNKLN 573
           L  N   
Sbjct: 202 LHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 40/215 (18%), Positives = 62/215 (28%), Gaps = 15/215 (6%)

Query: 16  NMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYA 75
            + S   ++     LT    + P         L LS N  +   SL  L  ++RL     
Sbjct: 8   KVASHLEVNCDKRNLT----ALPPDLPKDTTILHLSENLLYT-FSLATLMPYTRLTQLNL 62

Query: 76  DNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGE 135
           D            T       L  L       + +     L        V          
Sbjct: 63  DRA--------ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 136 FPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPR 195
            P   L    +L++L L  + L       +     L  L ++NNN        +   L  
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG-LEN 173

Query: 196 LISFNISMNALDGSIPSSFGNMNLLQILDLSNNQL 230
           L +  +  N+   +IP  F   +LL    L  N  
Sbjct: 174 LDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 515 SGLDLSC-NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
           S L+++C  + +  +PP +        L+LS N L     +T     ++  L+L   +
Sbjct: 11  SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 9e-08
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 212 SSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRW 271
           + + N    + LDL   ++   + E+L       + +  S+N +          L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 272 LQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSG----KIPRWLGNLTWLIHIIMPKNHL 327
           L +  N               L  L L NNSL           L +LT+L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 328 EGPIPVEFCHLYSLQILD 345
           +         +  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 3/127 (2%)

Query: 530 PQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF 589
            Q  N  R + L+L    +   I +  + L Q +++D S N++          L+ L   
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 590 SVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLPICRSPTTMSEASIENERDDNLI 649
            V  N +               E     N+ +    L    S  +++   I      N  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 650 DTDSFFI 656
               + I
Sbjct: 129 HYRLYVI 135

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 17/194 (8%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             +  +  +L    +  ++    + L+ +  +I  N++++    +Q   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 445 NNLHGL----------IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEF 494
           N L  +               +N     S        +   +  +       +    Q  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 495 FEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPS 554
             +   N                    +  I  I P +  LT++Q L LS N+++ L   
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R 194

Query: 555 TFSNLKQIESLDLS 568
             + LK ++ L+L 
Sbjct: 195 ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 185 IPVEIGDILP-----RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLA 239
           +P  I  I         I  N+   ++  ++  +   +N +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 240 MGCVNLEFLALSNNSLKGHMFSRNFNLINLRWL------------------QLEGNHFVG 281
               N+  L L+ N L       N   +   +L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSL 341
                L     LE LYL NN ++         LT L  + +  N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLS 370
           Q L +S N+IS  L +     ++  + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 16/201 (7%)

Query: 244 NLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSL 303
                 L   S+   +      L ++  +    +         +    ++  L+LN N L
Sbjct: 25  ETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 304 SGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLS 363
           +    + L NL  L  + + +N                 +  +   ++  +  S  + L 
Sbjct: 81  TD--IKPLANLKNLGWLFLDENK-------VKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 364 ITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNL 423
                 S  + + ++   T  +  + +      +     I   + GL++L +L L  N++
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190

Query: 424 EGEVPVQLCGLNQLQLLDLSN 444
                  L GL  L +L+L +
Sbjct: 191 SD--LRALAGLKNLDVLELFS 209

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 3/163 (1%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLIN 268
            IP           L L++N+L     + L     +L  L L  N L G   +      +
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 269 LRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE 328
           ++ LQL  N       +       L+ L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 329 GPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSK 371
               + +   +  +   ++        PS    + I  +  S+
Sbjct: 140 CNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 40/216 (18%), Positives = 72/216 (33%), Gaps = 35/216 (16%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
               +D +   +   +P    PL  T++ L+ N L      G F     LV L+L  N L
Sbjct: 9   EGTTVDCTGRGLK-EIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
            G  P+  +G S +  L LG N ++        GL+QL+ L+L +N +  ++P  F++  
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL- 125

Query: 460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDL 519
                                          +      +               L    L
Sbjct: 126 -----------------------------NSLTSLNLASNPFNCNCHLAWFAEWLRKKSL 156

Query: 520 SCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPST 555
           +        P +V ++   Q  +L H+       ++
Sbjct: 157 NGGAARCGAPSKVRDV---QIKDLPHSEFKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 6/177 (3%)

Query: 288 SKCS-SLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYS-LQILD 345
           + C      +      L  +IPR +        +++  N L              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 346 ISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPD 405
           +  N ++G  P+ F   S  Q          ++    F     L TL+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 406 WIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE 462
             + L+ L+ L L +N       +       L+   L+        P    + ++ +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKVRDVQIKD 176

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 39/331 (11%), Positives = 87/331 (26%), Gaps = 24/331 (7%)

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-------NLTWLIHI 320
           +L+   +        +   L +  S++ + L+ N++  +  RWL        +L      
Sbjct: 9   SLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 321 IMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKG 380
            +    ++  IP     L    +     + +  S  +         +         +   
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 381 GTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLL 440
                        ++  L   ++         L  +I G N LE     +     Q    
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ---- 183

Query: 441 DLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTK 500
             S+  LH +             +          ++                        
Sbjct: 184 --SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 501 NIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTG-----LIPST 555
                  G    LLS        ++            +QTL L +N +       L    
Sbjct: 242 WPNLRELGLNDCLLS--ARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 556 FSNLKQIESLDLSYNKLNGKIPHQLVELKEL 586
              +  +  L+L+ N+   +    + E++E+
Sbjct: 298 DEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 34/312 (10%), Positives = 77/312 (24%), Gaps = 34/312 (10%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMG---CVNLEFLALSNNS---LKGHMFSR 262
           S+ +     + ++ + LS N +  E    L+       +LE    S+     +K  +   
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 263 NFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIM 322
              L+       + +                   +L+ ++    +      L       +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 323 PKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT 382
            +   E  +  +  +   L+ +    N +       +     +   L    +        
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 383 FFNCSSLVTLDLSYNL-------------LNGSIPDWIDGLSQLSHLILGNNNLEGEVPV 429
                 L  L     L              + ++   +     L  L L +  L      
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 430 QL------CGLNQLQLLDLSNNNLHGLIPPCFDN---------TKLHESYNNSSSPDEQF 474
            +           LQ L L  N +                     L  + N  S  D+  
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

Query: 475 KILFSIKGHQGH 486
             +  +   +G 
Sbjct: 322 DEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 35/337 (10%), Positives = 75/337 (22%), Gaps = 23/337 (6%)

Query: 146 KLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDIL---PRLISFNIS 202
           K  +L  +           +     ++ + +S N         + + +     L     S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 203 MNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSR 262
                         + LL    L   +L               +             F  
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKL---------HTVRLSDNAFGPTAQEPLIDFLS 118

Query: 263 NFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIM 322
               +   +L   G         + +           N      I      L        
Sbjct: 119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 178

Query: 323 PKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT 382
            K      +      + +    +  ++ +   L  C     +     +   L        
Sbjct: 179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238

Query: 383 FFNCSSLVTLDLSYNLLNGSIPDWI------DGLSQLSHLILGNNNLEGEVPVQLC---- 432
             +  +L  L L+  LL+      +           L  L L  N +E +    L     
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 433 -GLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSS 468
             +  L  L+L+ N          +  ++  +     
Sbjct: 299 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 40/315 (12%), Positives = 85/315 (26%), Gaps = 40/315 (12%)

Query: 9   SLPWCLANMTSLRILDVSSNQLTGSIS---SSPLFYLTSIEELSLSNNHFHIPISLEPLF 65
           S+   L    S++ + +S N +    +   S  +     +E    S+          P  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 66  NHSRLKIFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDV 125
               L+           +++ +    T +  L       +  + +              +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 126 HFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHI 185
             +  ++              +      N    G  +    + +  RLL        G  
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGR--NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 199

Query: 186 PVEIGDILPRLI-----------SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEI 234
           P  I  +L   +             N   +    ++  +  +   L+ L L++  L+   
Sbjct: 200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259

Query: 235 PEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSL-----SK 289
              +      L                     I L+ L+L+ N    +  ++L      K
Sbjct: 260 AAAVVDAFSKL-------------------ENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 290 CSSLEGLYLNNNSLS 304
              L  L LN N  S
Sbjct: 301 MPDLLFLELNGNRFS 315

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 15  ANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFY 74
             + +   +    + +T +++ +    L  I  LS          ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 75  ADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNG 134
             +N I       +           L+  +         K +     L+ +    +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 135 EFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILP 194
                 L   + L+ L L  + +     L   ++     +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 195 RLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSN 252
           +L +     N +    P    ++  L  + L NNQ++   P        NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 26/210 (12%), Positives = 61/210 (29%), Gaps = 18/210 (8%)

Query: 368 HLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEV 427
              K+ +   +   T  +   + TL      +     + +  L+ L  L L +N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 428 PVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHV 487
           P++         L  +       I        L  +    +       +      +    
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 488 EKKIQEFFEFTTKNIAYIFQGKVLSL---------LSGLDLSCNKLIGHIPPQVGNLTRI 538
           +          T           +S          L+ L    NK+    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 539 QTLNLSHNNLTGLIPSTFSNLKQIESLDLS 568
             ++L +N ++ + P   +N   +  + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 25/212 (11%), Positives = 68/212 (32%), Gaps = 16/212 (7%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             ++ + +    + +  ++      L  ++ L      +     VQ   LN L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 445 NNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           N +  L P            + +   +                  +I +       +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHI---------PPQVGNLTRIQTLNLSHNNLTGLIPST 555
           +    +  + +   L+    + ++            + NL+++ TL    N ++ + P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 556 FSNLKQIESLDLSYNKLNGKIP-HQLVELKEL 586
            ++L  +  + L  N+++   P      L  +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 8e-07
 Identities = 52/331 (15%), Positives = 99/331 (29%), Gaps = 22/331 (6%)

Query: 162 RLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQ 221
           RL     R    L+++N          + ++ P L S   S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 222 ILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVG 281
           + + +   L+   P    +G  N +   L        +   + +  +L+ L         
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 282 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPV-------- 333
               +       E   L   +        L  L  L   +         +          
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 334 --EFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVT 391
                +  +  +  + D   S    +           L +++    +    F   S L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 392 LDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLI 451
                N  +  I    D    L  L + NN L  E+P       +L+ L  S N+L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAE-V 319

Query: 452 PPCFDN-TKLHESYNNSSSPDEQFKILFSIK 481
           P    N  +LH  YN      +  + +  ++
Sbjct: 320 PELPQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 57/347 (16%), Positives = 96/347 (27%), Gaps = 32/347 (9%)

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHL 327
               L+L        +P+       LE L  + NSL+ ++P    +L            +
Sbjct: 39  QAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLKS--------LLV 85

Query: 328 EGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCS 387
           +         L  L       NN    LP   +   +  + +  N L             
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF- 144

Query: 388 SLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNL 447
                         +  + +  L  L  L     +      +    L+   ++  +N   
Sbjct: 145 ---------IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 195

Query: 448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQ 507
                          + NN                 + +    + E  +  T        
Sbjct: 196 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 508 GKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDL 567
              LS L       N     I         ++ LN+S+N L   +P+    L   E L  
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIA 311

Query: 568 SYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENS 614
           S+N L  ++P     LK+L    V YN L  E P+          NS
Sbjct: 312 SFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 112 FPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHL 171
              FL   +   ++  +   +        + +N       L            I S    
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLT 231
              ++   N   +    + D+ P L   N+S N L   +P+       L+ L  S N L 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 317

Query: 232 GEIPEHLAMGCVNLEFLALSNNSLKG 257
            E+PE       NL+ L +  N L+ 
Sbjct: 318 -EVPELPQ----NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 52/339 (15%), Positives = 93/339 (27%), Gaps = 30/339 (8%)

Query: 13  CLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISLEPLFNHSRLK 71
           CL        L++++  L+ S+   P      +E L  S N    +P           LK
Sbjct: 35  CLDR--QAHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELP------QSLK 81

Query: 72  IFYADNNPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQ 131
               DNN + A       L         L       +           + L+ +      
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 132 MNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGD 191
           +                Q      ++                L+           +    
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201

Query: 192 ILPRLISFNISMNALDGSIPSSFG-------NMNLLQILDLSNNQLTGEIPEHLAMGCVN 244
            LP L +     N L                +  L  + +L  +    ++ E++  G   
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 245 LEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLS 304
           L       N+    + S      +L  L +  N  + E+P        LE L  + N L+
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA 317

Query: 305 GKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQI 343
            ++P    NL  L    +  N L    P     +  L++
Sbjct: 318 -EVPELPQNLKQL---HVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 117 YYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDV 176
              +  +     +     +    +    ++L       ++ +   R        L  L+V
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 177 SNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPE 236
           SNN        E+  + PRL     S N L   +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 237 HLAMGCVNLEFLALSN 252
                  ++E L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 296 LYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSL 355
           L+L +  L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 356 PSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL---NGSIPDWIDGLSQ 412
               +   + ++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 413 LSHLI 417
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 342 QILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNG 401
           ++L ++  +++  L      L +T + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALEN 57

Query: 402 SIPDWIDGLSQLSHLILGNNNLEG-EVPVQLCGLNQLQLLDLSNNNLHGL 450
                     Q   L+L NN L+       L    +L LL+L  N+L   
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 200 NISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHM 259
           +++   L  ++      + L+  LDLS+N+L    P   A+ C+ +       +      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 260 FSRNFNLINLRWLQLEGNHFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLI 318
                NL  L+ L L  N        Q L  C  L  L L  NSL          L  ++
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 438 QLLDLSNNNLHGL--IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFF 495
           ++L L++ +L  L  +      T L  S+N   +       L  ++              
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE------------VL 48

Query: 496 EFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQ-VGNLTRIQTLNLSHNNLT---GL 551
           + +   +  +     L  L  L L  N+L      Q + +  R+  LNL  N+L    G+
Sbjct: 49  QASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 552 IPSTFSNLKQIESL 565
                  L  + S+
Sbjct: 109 QERLAEMLPSVSSI 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 8e-06
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN-LTGLIPSTFSNLKQIESLDLSYNKL 572
            SGL  + +  +      +     +  L + +   L  L       L ++ +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 573 NGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL 626
               P        L+  ++++N L   +     Q  +  E    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 20/150 (13%), Positives = 33/150 (22%), Gaps = 2/150 (1%)

Query: 290 CSSLEGLYLNNNSLSGKIPRWLGNLT-WLIHIIMPKNHLEGPIPVEFCHLYSLQILDISD 348
                GL    +         L          I  + HL+     +   L  L+ L I  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 349 NNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWID 408
           + +    P  FH                 L   T    S    +     L       W+ 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 409 GLSQLSHLILGNNNLEGEVPVQLCGLNQLQ 438
              +     +    L+      L  +    
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 3/148 (2%)

Query: 220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHF 279
              L  + +    +   HL       E    +   L+         L  LR L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 280 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVE-FCHL 338
               P +      L  L L+ N+L   +         L  +++  N L     +      
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 339 YSLQILDISDNNISGSLPSCFHPLSITQ 366
               +  + +  +          +    
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 21/130 (16%), Positives = 34/130 (26%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLIN 268
                      L  L + N Q    +      G   L  L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 269 LRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE 328
           L  L L  N       +++   S  E +   N        RWL          +P+  L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 329 GPIPVEFCHL 338
                   H+
Sbjct: 142 CHGQGPLAHM 151

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 9e-06
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 7/219 (3%)

Query: 209 SIPSSFGNMNLLQILDLSNNQLTGEIPEHLA-MGCVNLEFLALSNNSLKGHMFSRNFNLI 267
            IPS          L     +L        +  G +    ++ ++          +    
Sbjct: 22  EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 268 NLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR--WLGNLTWLIHIIMPKN 325
                  + N+ +   P++     +L+ L ++N  +               L+ I    N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 326 HLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFN 385
                        +   IL ++ N I       F+   + +++LS N    +L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 386 CSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLE 424
            S  V LD+S   ++      ++ L +L        NL+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 4/232 (1%)

Query: 340 SLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLL 399
           S ++    ++ ++  +PS   P +  ++      L   ++ G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTK 459
              I   +       H I         + +       L  L     +  G+      +  
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKA-NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 460 LHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDL 519
                      D             G   + +  +         +        L      
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 520 SCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNK 571
             N L           +    L++S   +  L      NLK++ +      K
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 30/211 (14%), Positives = 51/211 (24%), Gaps = 3/211 (1%)

Query: 387 SSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNN 446
            + + L      L         G   L  + +  N++   +   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 447 LHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIF 506
            + L         L        S      +    K H         +            F
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 507 QGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLD 566
            G        L L+ N +              +     +NNL  L    F        LD
Sbjct: 149 VGLSFES-VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 567 LSYNKLNGKIPHQLVELKELAVFSVAYNNLS 597
           +S  +++    + L  LK+L   S    NL 
Sbjct: 208 ISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 27/212 (12%), Positives = 58/212 (27%), Gaps = 4/212 (1%)

Query: 18  TSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADN 77
            +   L     +L   I          +E++ +S N     I  +   N  +L     + 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
                 I        P  Q   +S +               +  L+      I       
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI 197
                 + +   L L  + +        +  +   L ++S+NN    +P ++       +
Sbjct: 148 FV--GLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-NLSDNNNLEELPNDVFHGASGPV 204

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQ 229
             +IS   +         N+  L+     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 30/237 (12%), Positives = 59/237 (24%), Gaps = 10/237 (4%)

Query: 19  SLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHF-HIPISLEPLFNHSRLKIFYADN 77
           S R+     +++T      P     +  EL         I       F          ++
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

Query: 78  NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFP 137
                +      L          + +  Y +   F      Q+ L      +   +    
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 138 NWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLI 197
           + L +    ++    ++      F         L L    N N    I     +      
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL----NKNGIQEIHNCAFNGTQLDE 180

Query: 198 SFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNS 254
                 N L+      F   +   ILD+S  ++   +P +       L   +  N  
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 15/190 (7%)

Query: 385 NCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSN 444
             +  +   L    +  ++      L Q++ L      ++    V+   LN L  ++ SN
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 445 NNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAY 504
           N L  + P       +    NN+   D       +          +I +           
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 505 IFQGKVLSLLSGLDLSCNKLIGHI---------PPQVGNLTRIQTLNLSHNNLTGLIPST 555
             +    ++     LS    +  +            + NLT ++ L++S N ++ +  S 
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SV 189

Query: 556 FSNLKQIESL 565
            + L  +ESL
Sbjct: 190 LAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 16/197 (8%)

Query: 400 NGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN---------NLHGL 450
           N    D    L++    +LG  N+   V      L+Q+  L               L+ L
Sbjct: 9   NQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNL 64

Query: 451 IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKV 510
               F N +L +     +       ++ + +         +      T  N        +
Sbjct: 65  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124

Query: 511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYN 570
            +L +   L  +         +  LT +Q LN S N +T L P   +NL  +E LD+S N
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 182

Query: 571 KLNG-KIPHQLVELKEL 586
           K++   +  +L  L+ L
Sbjct: 183 KVSDISVLAKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 199 FNISMNALDGS---IPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSL 255
           ++ S  ALD             N+  +L+  ++         +      L  L LSNN L
Sbjct: 20  YDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRL 77

Query: 256 KGHMFSRNF--NLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 313
                  +      NL+ L L GN    E      K   LE L+L+ NSLS         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 314 LTWLIHII 321
           ++ +    
Sbjct: 138 ISAIRERF 145

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 5/161 (3%)

Query: 265 NLINLRWLQLEGNHF-VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMP 323
                  ++L G    + ++  +LS   + + L L+ N++  KI   L  +  L  + + 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLG 78

Query: 324 KNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTF 383
           +N            +           N   SL      +++  +++S N +    +    
Sbjct: 79  RNL--IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 384 FNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLE 424
                L  L L+ N L     +          ++    NL+
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	693
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.75

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.6e-30  Score=257.54  Aligned_cols=259  Identities=35%  Similarity=0.574  Sum_probs=218.2

Q ss_pred             CCCEEeccCCcccc--cCCccccCCCCCcEEEccC-CccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEE
Q 037315          292 SLEGLYLNNNSLSG--KIPRWLGNLTWLIHIIMPK-NHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVH  368 (693)
Q Consensus       292 ~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  368 (693)
                      +++.|+++++.+.+  .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..             
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-------------  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-------------  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-------------
Confidence            46667777776665  3566777777777777765 6677777777778888888888777776322             


Q ss_pred             ccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCC-CEEEccCCcC
Q 037315          369 LSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQL-QLLDLSNNNL  447 (693)
Q Consensus       369 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~  447 (693)
                                +. .+..+++|+.+++++|.+...+|..+.+++.++++++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       118 ----------~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         118 ----------PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----------CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ----------cc-cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                      22 56778889999999998888889999999999999999999998899888888776 8899999999


Q ss_pred             cccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCccccc
Q 037315          448 HGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH  527 (693)
Q Consensus       448 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  527 (693)
                      ++..|..+...                                                      ....++++++...+.
T Consensus       187 ~~~~~~~~~~l------------------------------------------------------~~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEEC
T ss_pred             ccccccccccc------------------------------------------------------ccccccccccccccc
Confidence            98877766542                                                      245799999999999


Q ss_pred             CchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCcccc
Q 037315          528 IPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQF  607 (693)
Q Consensus       528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  607 (693)
                      +|..+..+++++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.+|++ ..+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccC
Confidence            99999999999999999999987754 6888999999999999999999999999999999999999999999985 788


Q ss_pred             CcCCcccccCccCCCCCCCCCCC
Q 037315          608 ATFNENSYEGNTFLCGLPLPICR  630 (693)
Q Consensus       608 ~~l~~~~~~~n~~~c~~~~~~c~  630 (693)
                      +++..+++.+|+.+|+.|+..|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCHHHhCCCccccCCCCCCCC
Confidence            99999999999999999988874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=5.5e-27  Score=242.79  Aligned_cols=342  Identities=24%  Similarity=0.316  Sum_probs=196.5

Q ss_pred             cCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCE
Q 037315          143 NNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQI  222 (693)
Q Consensus       143 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  222 (693)
                      .+.+|++|+++++.++..  ..+..+++|++|++++|+++ .++. +.. +++|++|++++|.+.+..  .++++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~~-L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LKN-LTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-ccC-Cccccccccccccccccc--cccccccccc
Confidence            345566666666665531  34455566666666666665 3332 222 556666666666665322  2556666666


Q ss_pred             EEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCc
Q 037315          223 LDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNS  302 (693)
Q Consensus       223 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  302 (693)
                      |+++++.++ .++...  ....+.......+.+......................     ....+...+.........|.
T Consensus       115 L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccc
Confidence            666666555 232221  2445555555555444322221111111111111110     01112222333333333332


Q ss_pred             ccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 037315          303 LSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGT  382 (693)
Q Consensus       303 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  382 (693)
                      ..  .......+++++.+++++|.+.+..+  +...++|+.|++++|.+.                       . ++  .
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-----------------------~-~~--~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-IG--T  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-CG--G
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-----------------------C-cc--h
Confidence            21  22333444455555555554443322  233444555555544443                       2 22  4


Q ss_pred             ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccc
Q 037315          383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE  462 (693)
Q Consensus       383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  462 (693)
                      +..+++|+.+++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.+++++|.+.+..  .+.      
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~------  304 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PIS------  304 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGG------
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccc------
Confidence            567788888888888877543  3777888888888888887433  3677888888888888776421  111      


Q ss_pred             ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315          463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN  542 (693)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  542 (693)
                                                                     .+++++.|++++|++++..  .+..+++|++|+
T Consensus       305 -----------------------------------------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         305 -----------------------------------------------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             -----------------------------------------------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             -----------------------------------------------hhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence                                                           1557888888888888653  378888999999


Q ss_pred             CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCC
Q 037315          543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYN  594 (693)
Q Consensus       543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  594 (693)
                      +++|+++++  ..++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       336 L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999988865  358888899999999998886654  788889999998887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.9e-26  Score=236.27  Aligned_cols=353  Identities=24%  Similarity=0.278  Sum_probs=207.9

Q ss_pred             CCCCccCcchhccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEECCCCcCcCcCCcccccCCCCCcEEEccCCcccc
Q 037315            3 DNELRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLFYLTSIEELSLSNNHFHIPISLEPLFNHSRLKIFYADNNPINA   82 (693)
Q Consensus         3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~   82 (693)
                      .+++++.++  ...+.+|++|++++++|+ ++..  ++.+++|++|++++|++++. +  .++++++|++|++++|++.+
T Consensus        31 ~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~g--l~~L~nL~~L~Ls~N~l~~l-~--~l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          31 KTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             CSSTTSEEC--HHHHTTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCccC--HHHhCCCCEEECCCCCCC-Cccc--cccCCCCCEEeCcCCcCCCC-c--cccCCccccccccccccccc
Confidence            445555443  346778999999999988 7754  88899999999999988743 3  48888999999998888753


Q ss_pred             ccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCC
Q 037315           83 KITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFR  162 (693)
Q Consensus        83 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  162 (693)
                      ..                              .++.+++|+.++++++...+..+.   .....+.......+.+.....
T Consensus       103 i~------------------------------~l~~l~~L~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~  149 (384)
T d2omza2         103 IT------------------------------PLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISDISA  149 (384)
T ss_dssp             CG------------------------------GGTTCTTCCEEECCSSCCCCCGGG---TTCTTCSEEEEEEEEECCCGG
T ss_pred             cc------------------------------cccccccccccccccccccccccc---ccccccccccccccccccccc
Confidence            21                              133445566666665555432221   233445555555444432211


Q ss_pred             CCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCC
Q 037315          163 LPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGC  242 (693)
Q Consensus       163 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  242 (693)
                      ...................     ..+.. .+.........+...  ....+..+++++.+++++|.++ .++..  ..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~-~~~~~--~~~  218 (384)
T d2omza2         150 LSGLTSLQQLSFGNQVTDL-----KPLAN-LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQIS-DITPL--GIL  218 (384)
T ss_dssp             GTTCTTCSEEEEEESCCCC-----GGGTT-CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCC-CCGGG--GGC
T ss_pred             ccccccccccccccccchh-----hhhcc-ccccccccccccccc--cccccccccccceeeccCCccC-CCCcc--ccc
Confidence            1111111111111111111     11111 233333444444332  2334555666666666666665 33221  235


Q ss_pred             CCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEc
Q 037315          243 VNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIM  322 (693)
Q Consensus       243 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  322 (693)
                      ++|++|++++|.++..  ..+..+++|+.|++++|.+++..  .+..+++|++|+++++.+.+..  .+..++.++.+.+
T Consensus       219 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~  292 (384)
T d2omza2         219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLEL  292 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccccc
Confidence            6666666666666542  24455666666666666665432  2555666666666666665322  2455566666666


Q ss_pred             cCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCC
Q 037315          323 PKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGS  402 (693)
Q Consensus       323 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  402 (693)
                      ..|.+.+.  ..+..+++++.|++++|++.+                       . +  .+..+++|++|++++|++++ 
T Consensus       293 ~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~-----------------------l-~--~l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         293 NENQLEDI--SPISNLKNLTYLTLYFNNISD-----------------------I-S--PVSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             CSSCCSCC--GGGGGCTTCSEEECCSSCCSC-----------------------C-G--GGGGCTTCCEEECCSSCCCC-
T ss_pred             cccccccc--cccchhcccCeEECCCCCCCC-----------------------C-c--ccccCCCCCEEECCCCCCCC-
Confidence            66665532  235556666666666665542                       2 1  35677889999999998874 


Q ss_pred             cchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 037315          403 IPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNN  445 (693)
Q Consensus       403 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  445 (693)
                      ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       344 l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            33 58888999999999999886544  788899999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.2e-27  Score=239.71  Aligned_cols=251  Identities=30%  Similarity=0.461  Sum_probs=166.4

Q ss_pred             CCCeEeccCccccc--cCCcCCcCCCCCCEEeccC-CcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEE
Q 037315          268 NLRWLQLEGNHFVG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQIL  344 (693)
Q Consensus       268 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  344 (693)
                      +++.|+|+++.+.+  .+|..++.+++|++|++++ |.+++.+|..++++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45566666665554  3456666666666666665 56666666666666667777777766666666666666677777


Q ss_pred             ECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCC-CEEEccCCcc
Q 037315          345 DISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQL-SHLILGNNNL  423 (693)
Q Consensus       345 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~L~~n~l  423 (693)
                      ++++|.+.+.+|.                        .+..+++++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       131 ~l~~N~~~~~~p~------------------------~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccCch------------------------hhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            7766665533222                        45556666666666666666666666666554 6666777777


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccce
Q 037315          424 EGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIA  503 (693)
Q Consensus       424 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (693)
                      ++..+..+..+..+ .++++++...+.+|..+..                                              
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~----------------------------------------------  219 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGS----------------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccc----------------------------------------------
Confidence            66666666555433 5777776666655554433                                              


Q ss_pred             eeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccC
Q 037315          504 YIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVEL  583 (693)
Q Consensus       504 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  583 (693)
                             +++++.+++++|.+.+.+ ..+..+++|+.|+|++|++++.+|..|+++++|++|+|++|+++|.+|. +..+
T Consensus       220 -------~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         220 -------DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             -------TSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             -------cccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence                   346777777777776544 3567777888888888888877788888888888888888888877774 4677


Q ss_pred             CCCCEEecCCCcCcc
Q 037315          584 KELAVFSVAYNNLSG  598 (693)
Q Consensus       584 ~~L~~L~l~~N~l~~  598 (693)
                      ++|+.+++++|+..|
T Consensus       291 ~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         291 QRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGSCGGGTCSSSEEE
T ss_pred             CCCCHHHhCCCcccc
Confidence            788888888887443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=5.4e-25  Score=219.44  Aligned_cols=205  Identities=24%  Similarity=0.294  Sum_probs=110.2

Q ss_pred             CCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEecc
Q 037315          220 LQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLN  299 (693)
Q Consensus       220 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  299 (693)
                      .+.++-++.+++ .+|..+   .+++++|++++|+++.+.+..|.++++|++|++++|.+....|..|..+++|+.|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344555555554 555433   2355566666666555554555556666666666666665555556666666666666


Q ss_pred             CCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccC
Q 037315          300 NNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLK  379 (693)
Q Consensus       300 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  379 (693)
                      +|+++. +|..  ....++.|.+.+|.+....+..+.....+..++...|.....                      ...
T Consensus        88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------------------~~~  142 (305)
T d1xkua_          88 KNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GIE  142 (305)
T ss_dssp             SSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GBC
T ss_pred             CCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------------------CCC
Confidence            666553 2222  123455556666655554444455555666666655543211                      111


Q ss_pred             cccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcc
Q 037315          380 GGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFD  456 (693)
Q Consensus       380 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  456 (693)
                      ...+..+++|+.+++++|.+.. ++..  .+++|++|++++|..+...+..+.+++.+++|++++|.+.+..+.++.
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             ccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc
Confidence            1245556666666666666653 2322  245666666666666655555566666666666666655555444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.9e-24  Score=213.14  Aligned_cols=252  Identities=26%  Similarity=0.354  Sum_probs=146.5

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEE
Q 037315          170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLA  249 (693)
Q Consensus       170 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  249 (693)
                      ..+.+|.++.+++ .+|..+.   +++++|++++|+|+...+.+|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4455666666665 5555432   35556666666555444445555555555555555555 33333333455555555


Q ss_pred             ccccccccccCccCCCCCCCCeEeccCccccccCCcCCcCCCCCCEEeccCCcccccCCccccCCCCCcEEEccCCccc-
Q 037315          250 LSNNSLKGHMFSRNFNLINLRWLQLEGNHFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLE-  328 (693)
Q Consensus       250 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~-  328 (693)
                      +++|+++.+                         |..+  ...++.|++.+|.+....+..+.....+..+....+... 
T Consensus        86 l~~n~l~~l-------------------------~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          86 LSKNQLKEL-------------------------PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             CCSSCCSBC-------------------------CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             ccCCccCcC-------------------------ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence            555554443                         2211  234444555555444433334444444455555444322 


Q ss_pred             -cCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhh
Q 037315          329 -GPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWI  407 (693)
Q Consensus       329 -~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  407 (693)
                       ...+..+..+++|+.+++++|.+... +.. ..++++.|++++|......+. .|..++.++.|++++|.+.+..+.++
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~-~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNITTI-PQG-LPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSC-CSS-CCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCCCccccccccccCccccccCCcccc-Ccc-cCCccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccc
Confidence             12234455666677777777666532 221 134566666666655444443 67777888888888888887777788


Q ss_pred             hCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCccc
Q 037315          408 DGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDN  457 (693)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  457 (693)
                      .++++|++|+|++|+++ .+|.++..+++|++|++++|+++.+....|..
T Consensus       216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             cccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccC
Confidence            88888888888888887 45667888888888888888887665555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-25  Score=217.96  Aligned_cols=225  Identities=26%  Similarity=0.293  Sum_probs=116.5

Q ss_pred             EEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCC-CCcccEEEccCcccccccCcccccCCCCCcEEeCc-C
Q 037315          319 HIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFH-PLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLS-Y  396 (693)
Q Consensus       319 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~-~  396 (693)
                      .++.++++++ .+|..+  .+++++|++++|+++...+..+. ...|+.+++++|++....+ ..+..++.++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC--CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-ccccccccccccccccc
Confidence            3455555555 334333  24567777777777644443332 4445555555555533222 244455555555443 3


Q ss_pred             cccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhH
Q 037315          397 NLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKI  476 (693)
Q Consensus       397 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  476 (693)
                      +.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|+++++.+..|..                   
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-------------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-------------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc-------------------
Confidence            3444444445555555555555555555444444555555555555555555444444433                   


Q ss_pred             hhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccc
Q 037315          477 LFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTF  556 (693)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  556 (693)
                                                        .++|++|++++|++.+..+..|.++++|+.+++++|+++++.|..|
T Consensus       152 ----------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f  197 (284)
T d1ozna_         152 ----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (284)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ----------------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHh
Confidence                                              2245555555555555555555555555555555555555555555


Q ss_pred             cCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccC
Q 037315          557 SNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEI  600 (693)
Q Consensus       557 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  600 (693)
                      .++++|++||+++|++.+..+..|..+++|++|++++|++.|.+
T Consensus       198 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            55555555555555555555555555555555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=213.39  Aligned_cols=237  Identities=24%  Similarity=0.237  Sum_probs=170.6

Q ss_pred             CCCCEEeccCCcccccCCccccCCCCCcEEEccCCccccCccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEcc
Q 037315          291 SSLEGLYLNNNSLSGKIPRWLGNLTWLIHIIMPKNHLEGPIPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLS  370 (693)
Q Consensus       291 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  370 (693)
                      +.+++|+|++|+++...+..|.++++|++|++++|.+....+..+..++.++.++...+...                  
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~------------------   93 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL------------------   93 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC------------------
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc------------------
Confidence            34566666666665544455666666666666666665555555555666666655433221                  


Q ss_pred             CcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCccc
Q 037315          371 KNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGL  450 (693)
Q Consensus       371 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  450 (693)
                           ..++...|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|+.|++++|++.++
T Consensus        94 -----~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          94 -----RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             -----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             -----ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence                 223333677788888888888888766667777788888888888888877777788888888888888888888


Q ss_pred             CCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCch
Q 037315          451 IPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPP  530 (693)
Q Consensus       451 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  530 (693)
                      .+..|..                                                     +++|+.+++++|++++..|.
T Consensus       169 ~~~~f~~-----------------------------------------------------l~~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         169 PERAFRG-----------------------------------------------------LHSLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             CTTTTTT-----------------------------------------------------CTTCCEEECCSSCCCEECTT
T ss_pred             chhhhcc-----------------------------------------------------ccccchhhhhhccccccChh
Confidence            7777765                                                     45788899999999888888


Q ss_pred             hhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCc
Q 037315          531 QVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWK  604 (693)
Q Consensus       531 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~  604 (693)
                      .|..+++|++|++++|++.++.+..|+++++|++|++++|++.+.-+. -.-...++.+....+++.|..|..+
T Consensus       196 ~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l  268 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL  268 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGG
T ss_pred             HhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHH
Confidence            999999999999999999999889999999999999999998754321 1111234556666777777766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-23  Score=203.37  Aligned_cols=202  Identities=27%  Similarity=0.298  Sum_probs=95.2

Q ss_pred             CCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEE
Q 037315          337 HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL  416 (693)
Q Consensus       337 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  416 (693)
                      ....+.+++.+++.++. +|..+ +++++.|+|++|++.+ ++...|.++++|++|++++|.++.. + .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCc-CcCCCEEECcCCcCCC-cCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            44556666777777763 33322 2345555555555532 2222445555555555555554422 1 23344555555


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceee
Q 037315          417 ILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFE  496 (693)
Q Consensus       417 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (693)
                      ++++|+++ ..+..+.++++|+.|++++|.+.+..+..+..                                       
T Consensus        83 ~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------------------  122 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG---------------------------------------  122 (266)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT---------------------------------------
T ss_pred             cccccccc-ccccccccccccccccccccccceeecccccc---------------------------------------
Confidence            55555544 22334444555555555555444433333322                                       


Q ss_pred             eecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccC
Q 037315          497 FTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI  576 (693)
Q Consensus       497 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  576 (693)
                                    +.++++|++++|.+....+..+..+++|+.|++++|++++++++.|..+++|++|+|++|+|+ .+
T Consensus       123 --------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         123 --------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             --------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             --------------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence                          224444555555444444444444445555555555554444444444455555555555544 34


Q ss_pred             CcccccCCCCCEEecCCCcCcc
Q 037315          577 PHQLVELKELAVFSVAYNNLSG  598 (693)
Q Consensus       577 ~~~l~~l~~L~~L~l~~N~l~~  598 (693)
                      |+.+..+++|+.|++++|++.|
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCC
T ss_pred             ChhHCCCCCCCEEEecCCCCCC
Confidence            4444444444444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.2e-22  Score=192.80  Aligned_cols=204  Identities=27%  Similarity=0.245  Sum_probs=177.5

Q ss_pred             CcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEE
Q 037315          362 LSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLD  441 (693)
Q Consensus       362 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  441 (693)
                      ..+.+++.+++.++ .+|. .+  .+++++|+|++|.+++..+.+|.++++|++|++++|+++.. + .+..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~-~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCc-Cc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            45667888888885 4564 22  26899999999999977778899999999999999999853 3 367899999999


Q ss_pred             ccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCC
Q 037315          442 LSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSC  521 (693)
Q Consensus       442 l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  521 (693)
                      +++|++.... ..+..                                                     +++|+.|++++
T Consensus        84 Ls~N~l~~~~-~~~~~-----------------------------------------------------l~~L~~L~l~~  109 (266)
T d1p9ag_          84 LSHNQLQSLP-LLGQT-----------------------------------------------------LPALTVLDVSF  109 (266)
T ss_dssp             CCSSCCSSCC-CCTTT-----------------------------------------------------CTTCCEEECCS
T ss_pred             cccccccccc-ccccc-----------------------------------------------------ccccccccccc
Confidence            9999987543 33333                                                     56899999999


Q ss_pred             CcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          522 NKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       522 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      |.+.+..+..+..+.++++|++++|.++.+.+..+..+++|+.|++++|++++..+..|..+++|++|++++|+++ .+|
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp  188 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP  188 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccC
Confidence            9999888888999999999999999999999999999999999999999999888889999999999999999999 788


Q ss_pred             CCccccCcCCcccccCccCCCCCCC
Q 037315          602 EWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       602 ~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      +.+..+..++.+.++||||.|+|..
T Consensus       189 ~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             hhHCCCCCCCEEEecCCCCCCCcch
Confidence            8777888999999999999999865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=6.1e-18  Score=171.74  Aligned_cols=58  Identities=31%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCc
Q 037315          383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLH  448 (693)
Q Consensus       383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  448 (693)
                      +..++.|+.+++++|.... .+   ....++..+.+..+.+... +   ...+.+...++..+.+.
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccc-cc---ccccccccccccccccccc-c---ccccccccccccccccc
Confidence            3456667777777766542 22   2345566677776666522 1   12345566666555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=1.9e-17  Score=168.06  Aligned_cols=76  Identities=32%  Similarity=0.461  Sum_probs=43.4

Q ss_pred             cceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCC
Q 037315          514 LSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAY  593 (693)
Q Consensus       514 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  593 (693)
                      ....++..+.+.+.    ...+++|++|+|++|+++.+ |.   .+++|+.|+|++|+|+ .+|..   +++|++|++++
T Consensus       266 ~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~  333 (353)
T d1jl5a_         266 LYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEY  333 (353)
T ss_dssp             CCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             hcccccccCccccc----cccCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcC
Confidence            34455555554432    22345677777777777644 32   2456777777777776 34432   34677777777


Q ss_pred             CcCcccCCC
Q 037315          594 NNLSGEIPE  602 (693)
Q Consensus       594 N~l~~~~p~  602 (693)
                      |+++ .+|+
T Consensus       334 N~L~-~lp~  341 (353)
T d1jl5a_         334 NPLR-EFPD  341 (353)
T ss_dssp             SCCS-SCCC
T ss_pred             CcCC-CCCc
Confidence            7765 4444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.9e-21  Score=201.95  Aligned_cols=381  Identities=20%  Similarity=0.127  Sum_probs=185.9

Q ss_pred             CCCEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccc----cCCccCCCCCCCCEEEcccCccccccchHHhh----C
Q 037315          170 HLRLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDG----SIPSSFGNMNLLQILDLSNNQLTGEIPEHLAM----G  241 (693)
Q Consensus       170 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~  241 (693)
                      +|++||++++++++..-..+...++++++|+|++|.++.    .++..+..+++|++|||++|.+++.-...+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            345555555555432222222334555555555555542    12233445555666666555554211111111    1


Q ss_pred             CCCCcEEEccccccccc----cCccCCCCCCCCeEeccCccccccCCcC----Cc-CCCCCCEEeccCCcccccC----C
Q 037315          242 CVNLEFLALSNNSLKGH----MFSRNFNLINLRWLQLEGNHFVGEIPQS----LS-KCSSLEGLYLNNNSLSGKI----P  308 (693)
Q Consensus       242 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~-~l~~L~~L~L~~n~i~~~~----~  308 (693)
                      ..+|++|++++|.+++.    .+..+..+++|++|++++|.+.......    +. ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            23455666655555432    1223445555666666655544211100    00 1112222222222221100    0


Q ss_pred             ccccCCCCCcEEEccCCccccCcc----ccc-cCCCCCCEEECcCCcCCCCCCC-----CCCCCcccEEEccCcccccc-
Q 037315          309 RWLGNLTWLIHIIMPKNHLEGPIP----VEF-CHLYSLQILDISDNNISGSLPS-----CFHPLSITQVHLSKNMLHGQ-  377 (693)
Q Consensus       309 ~~l~~l~~L~~L~l~~n~~~~~~~----~~~-~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~L~l~~n~~~~~-  377 (693)
                      ..+.....++.+.++++.......    ..+ ........+++..+.+......     ......++.+.+.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            112233455555555554331100    001 1223444555555544311100     01134455666665554221 


Q ss_pred             ---cCcccccCCCCCcEEeCcCcccCCC----cchhhhCCCCCCEEEccCCcccccCCcc-----cCCCCCCCEEEccCC
Q 037315          378 ---LKGGTFFNCSSLVTLDLSYNLLNGS----IPDWIDGLSQLSHLILGNNNLEGEVPVQ-----LCGLNQLQLLDLSNN  445 (693)
Q Consensus       378 ---~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~l~~n  445 (693)
                         ...........++.+++++|.+...    ...++...+.++.+++++|+++......     ......|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               1111334566788888888776532    2223455777888888888776332221     123457888888887


Q ss_pred             cCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCccc
Q 037315          446 NLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLI  525 (693)
Q Consensus       446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  525 (693)
                      .++......+...                                                 ....++|++|+|++|++.
T Consensus       323 ~l~~~~~~~l~~~-------------------------------------------------~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         323 SFTAACCSHFSSV-------------------------------------------------LAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCBGGGHHHHHHH-------------------------------------------------HHHCSSCCEEECCSSBCH
T ss_pred             chhhhhhhhcccc-------------------------------------------------cccccchhhhheeeeccc
Confidence            7653221111100                                                 001346888888888876


Q ss_pred             ccC----chhhc-cCCCCCeeeCCCccCCcc----CcccccCCCCCCEEeCCCccccccCCcccc-----cCCCCCEEec
Q 037315          526 GHI----PPQVG-NLTRIQTLNLSHNNLTGL----IPSTFSNLKQIESLDLSYNKLNGKIPHQLV-----ELKELAVFSV  591 (693)
Q Consensus       526 ~~~----~~~~~-~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~L~~L~l  591 (693)
                      +..    +..+. ..+.|++|+|++|.+++.    +++.+..+++|++|||++|+++......+.     ....|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            432    22232 456788888888888753    234566678888888888888754333331     2346888888


Q ss_pred             CCCcCccc
Q 037315          592 AYNNLSGE  599 (693)
Q Consensus       592 ~~N~l~~~  599 (693)
                      .+|.+...
T Consensus       434 ~~~~~~~~  441 (460)
T d1z7xw1         434 YDIYWSEE  441 (460)
T ss_dssp             TTCCCCHH
T ss_pred             CCCCCCHH
Confidence            88887643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.9e-21  Score=200.96  Aligned_cols=401  Identities=19%  Similarity=0.106  Sum_probs=206.4

Q ss_pred             CCCEEEccCccccccCchhhhhcCCCCCEEEccCCccccc----CCCCCCCCCCCCEEEccCCcCcccCChhhhhc----
Q 037315          121 DLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGP----FRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDI----  192 (693)
Q Consensus       121 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~----  192 (693)
                      +|++|+++++++++..-..++..++++++|+|++|.++..    +...+..+++|++||+++|+++......+.+.    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            3556666666665543333445666677777777766532    22334566677777777776653222222222    


Q ss_pred             CCCCcEEEccCCccccc----CCccCCCCCCCCEEEcccCccccccchHHhh----CCCCCcEEEcccccccccc----C
Q 037315          193 LPRLISFNISMNALDGS----IPSSFGNMNLLQILDLSNNQLTGEIPEHLAM----GCVNLEFLALSNNSLKGHM----F  260 (693)
Q Consensus       193 l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~----~  260 (693)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.+.....+..    ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            23577777777766532    2345666777777777777665322111111    1112333333322222110    0


Q ss_pred             ccCCCCCCCCeEeccCccccccCC----cCC-cCCCCCCEEeccCCcccccC----CccccCCCCCcEEEccCCccccC-
Q 037315          261 SRNFNLINLRWLQLEGNHFVGEIP----QSL-SKCSSLEGLYLNNNSLSGKI----PRWLGNLTWLIHIIMPKNHLEGP-  330 (693)
Q Consensus       261 ~~~~~l~~L~~L~L~~n~l~~~~~----~~l-~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~l~~n~~~~~-  330 (693)
                      ..+...+.++.++++++.......    ..+ ........+++..+.+....    ...+...+.++.+.+.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            112233455555555554331100    000 11123445555555433111    11223345555555555543221 


Q ss_pred             ----ccccccCCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchh
Q 037315          331 ----IPVEFCHLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDW  406 (693)
Q Consensus       331 ----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  406 (693)
                          ..........++.+++++|.+.....                   .... ..+...+.++.+++++|.+.+.....
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~-------------------~~~~-~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLC-RVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHH-HHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cchhhccccccccccccccccccccccccc-------------------cccc-ccccccccccccccccccccccccch
Confidence                11223334555566665555432100                   0011 13345677788888887765332222


Q ss_pred             h-----hCCCCCCEEEccCCcccccCCc----ccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHh
Q 037315          407 I-----DGLSQLSHLILGNNNLEGEVPV----QLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKIL  477 (693)
Q Consensus       407 ~-----~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  477 (693)
                      +     ...+.|+.+++++|.++.....    .+...++|++|+|++|++.......+..                    
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~--------------------  362 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ--------------------  362 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH--------------------
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh--------------------
Confidence            1     2345788888888877654332    2345668888888888875321111100                    


Q ss_pred             hhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCccccc----CchhhccCCCCCeeeCCCccCCccCc
Q 037315          478 FSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGH----IPPQVGNLTRIQTLNLSHNNLTGLIP  553 (693)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~  553 (693)
                       .+                           ....+.|++|+|++|++++.    ++..+...++|++|+|++|+++....
T Consensus       363 -~l---------------------------~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         363 -GL---------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             -HH---------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             -hh---------------------------hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence             00                           00133588899999988743    34456778999999999999876433


Q ss_pred             cc----cc-CCCCCCEEeCCCccccccCCccc----ccCCCCCEE
Q 037315          554 ST----FS-NLKQIESLDLSYNKLNGKIPHQL----VELKELAVF  589 (693)
Q Consensus       554 ~~----~~-~l~~L~~L~Ls~N~l~~~~~~~l----~~l~~L~~L  589 (693)
                      ..    +. +.+.|+.|++++|.+....+..+    ...|+|+++
T Consensus       415 ~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            22    22 44579999999999875444433    345666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=9.9e-19  Score=160.04  Aligned_cols=177  Identities=24%  Similarity=0.281  Sum_probs=125.9

Q ss_pred             CcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccc-cCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCC
Q 037315          389 LVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEG-EVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNS  467 (693)
Q Consensus       389 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~  467 (693)
                      .+.++.++++++ .+|..+.  +++++|+|++|++++ ..+..|.++++|+.|++++|.+....+..|..          
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------   76 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------   76 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT----------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc----------
Confidence            356777777777 4554442  578888888888865 34556777888888888888888777776655          


Q ss_pred             CCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCcc
Q 037315          468 SSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNN  547 (693)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  547 (693)
                                                                 +++|++|+|++|++....+..|.++++|++|+|++|+
T Consensus        77 -------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          77 -------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             -------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------ccccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence                                                       4478888888888887777788888888888888888


Q ss_pred             CCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCCCCccccCcCCcccccCccCCCCCC
Q 037315          548 LTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLP  625 (693)
Q Consensus       548 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  625 (693)
                      |+++.++.|.++++|++|+|++|++....+.. .-...++.+.+..+.+++..|..   +..+...++..|.+.|.++
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             ccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            88888888888888888888888886432211 11223556667777777777653   3344556677777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=163.66  Aligned_cols=80  Identities=21%  Similarity=0.079  Sum_probs=51.3

Q ss_pred             CcceEECCCCcccccCchhhccCCCCC-eeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV  591 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  591 (693)
                      .++.|++++|+++...+..+.. ++++ .+++++|+++.+.++.|.++++|++|+|++|+++...+..|.++++|+++++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            4666777777776554444433 3433 3356677777766667777777777777777777655666666666666655


Q ss_pred             CC
Q 037315          592 AY  593 (693)
Q Consensus       592 ~~  593 (693)
                      .+
T Consensus       233 ~~  234 (242)
T d1xwdc1         233 YN  234 (242)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.1e-17  Score=157.84  Aligned_cols=76  Identities=17%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      .++|+.|++++|.+.+.  ..++++++|++|++++|+++++.  .++++++|++|+|++|++++..  .+.++++|++|+
T Consensus       150 ~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~  223 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVT  223 (227)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEE
T ss_pred             ccccccccccccccccc--hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEE
Confidence            34566677776666533  23667777777777777777652  3667777777777777776443  266777777777


Q ss_pred             cC
Q 037315          591 VA  592 (693)
Q Consensus       591 l~  592 (693)
                      ++
T Consensus       224 ls  225 (227)
T d1h6ua2         224 LT  225 (227)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=9.8e-18  Score=158.14  Aligned_cols=55  Identities=20%  Similarity=0.306  Sum_probs=38.6

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCC
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY  569 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  569 (693)
                      +++|++|++++|++++.  ..++.+++|++|+|++|+++++.  .++++++|++|++++
T Consensus       172 l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         172 LSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             cccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            44566667766666643  23677788888888888887764  377888888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.2e-18  Score=160.33  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEcc
Q 037315          172 RLLDVSNNNFQGHIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALS  251 (693)
Q Consensus       172 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  251 (693)
                      +.++.++..++ .+|..+.   +++++|++++|.++...+.+|.++++|++|++++|.+.+.++...+.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666665 5665442   3667777777777655555667777777777777766544555555556666666654


Q ss_pred             c-cccccccCccCCCCCCCCeEeccCcccc
Q 037315          252 N-NSLKGHMFSRNFNLINLRWLQLEGNHFV  280 (693)
Q Consensus       252 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~  280 (693)
                      . |.+....+..+.++++|+++++++|.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccchhhhc
Confidence            3 4555555555556666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=2.7e-17  Score=150.34  Aligned_cols=137  Identities=23%  Similarity=0.359  Sum_probs=118.9

Q ss_pred             cCcceEECCCCcccc-cCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEe
Q 037315          512 SLLSGLDLSCNKLIG-HIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFS  590 (693)
Q Consensus       512 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  590 (693)
                      +++++|+|++|++++ ..+..|.++++|++|+|++|.+..+++..|..+++|++|+|++|++..+.|..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            468999999999976 4466789999999999999999999999999999999999999999988899999999999999


Q ss_pred             cCCCcCcccCCCCccccCcCCcccccCccCCCCCCCC----------------CCCCCCCCCccccccccCCCC
Q 037315          591 VAYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPLP----------------ICRSPTTMSEASIENERDDNL  648 (693)
Q Consensus       591 l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~~~  648 (693)
                      |++|+|++..|.++..+.++..+.+.+||+.|+|+..                .|..|....+..+.+.....+
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHhhC
Confidence            9999999988888888999999999999999998652                477777777666655555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.8e-16  Score=146.94  Aligned_cols=145  Identities=26%  Similarity=0.375  Sum_probs=83.5

Q ss_pred             ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccc
Q 037315          383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHE  462 (693)
Q Consensus       383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~  462 (693)
                      +..+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|+.|++++|.+....  .+..     
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~~--~l~~-----  132 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDIN--GLVH-----  132 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCG--GGGG-----
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccccc--cccc-----
Confidence            344555556666655555322  24555666666666666553 22 3555666666666666543211  1111     


Q ss_pred             ccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeee
Q 037315          463 SYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLN  542 (693)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  542 (693)
                                                                      ++.++.+++++|.+++  +..+..+++|++++
T Consensus       133 ------------------------------------------------l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         133 ------------------------------------------------LPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             ------------------------------------------------cccccccccccccccc--cccccccccccccc
Confidence                                                            3456666666666653  23455667777777


Q ss_pred             CCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecC
Q 037315          543 LSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVA  592 (693)
Q Consensus       543 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  592 (693)
                      +++|+++++.  .+.++++|++|++++|+++. +| .+..+++|++|+++
T Consensus       163 l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         163 LEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            7777776542  36677777777777777763 33 46677777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.4e-16  Score=144.26  Aligned_cols=166  Identities=26%  Similarity=0.336  Sum_probs=108.3

Q ss_pred             CCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEE
Q 037315          337 HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL  416 (693)
Q Consensus       337 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  416 (693)
                      .+.+|+.|++++|.+.. ++....+++|++|++++|++.+. +  .+..+++|+.|++++|++++ ++ .+.++++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~~l~~l~~L~~L~L~~n~i~~l-~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDI-K--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC-chhHhhCCCCCEEeCCCccccCc-c--ccccCccccccccccccccc-cc-ccccccccccc
Confidence            35567777777777763 33334466777777777777542 2  34567777777777777764 33 46777777777


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceee
Q 037315          417 ILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFE  496 (693)
Q Consensus       417 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (693)
                      ++++|.+..  ...+..++.++.+++++|.+++..+  +.                                        
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~~--~~----------------------------------------  153 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITDITV--LS----------------------------------------  153 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCGG--GG----------------------------------------
T ss_pred             ccccccccc--ccccccccccccccccccccccccc--cc----------------------------------------
Confidence            777777652  2346677777777777777653211  11                                        


Q ss_pred             eecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCC
Q 037315          497 FTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSY  569 (693)
Q Consensus       497 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  569 (693)
                                   .+++|+++++++|++.+..  .+.++++|++|++++|+++++ + .+.++++|++|+|++
T Consensus       154 -------------~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 -------------RLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------------GCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             -------------ccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence                         1456777777777776432  367777777777777777755 2 477777777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.4e-16  Score=140.78  Aligned_cols=162  Identities=29%  Similarity=0.435  Sum_probs=113.1

Q ss_pred             CCCCCCEEECcCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEE
Q 037315          337 HLYSLQILDISDNNISGSLPSCFHPLSITQVHLSKNMLHGQLKGGTFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHL  416 (693)
Q Consensus       337 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  416 (693)
                      .+.+++.|++++|.+..                        +.  .++.+++|++|++++|.+++..+  +.++++|++|
T Consensus        38 ~l~~l~~L~l~~~~i~~------------------------l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L   89 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS------------------------ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI   89 (199)
T ss_dssp             HHTTCCEEECTTSCCCC------------------------CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhcCCCEEECCCCCCCC------------------------cc--ccccCCCcCcCccccccccCccc--ccCCcccccc
Confidence            45667777777776652                        11  35667888888888888875433  7788888888


Q ss_pred             EccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccccccCCCCCCchhhhHhhhhcccCCcccccccceee
Q 037315          417 ILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFE  496 (693)
Q Consensus       417 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (693)
                      ++++|.+... + .+.++++|+.|++++|.+....+  +..                                       
T Consensus        90 ~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~~--~~~---------------------------------------  126 (199)
T d2omxa2          90 LMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDP--LKN---------------------------------------  126 (199)
T ss_dssp             ECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCGG--GTT---------------------------------------
T ss_pred             cccccccccc-c-ccccccccccccccccccccccc--cch---------------------------------------
Confidence            8888887632 2 47778888888888877654321  111                                       


Q ss_pred             eecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccC
Q 037315          497 FTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI  576 (693)
Q Consensus       497 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  576 (693)
                                    +++|+.|++++|++...  ..+..+++|++|++++|+++++.  .++++++|++|++++|++++. 
T Consensus       127 --------------l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i-  187 (199)
T d2omxa2         127 --------------LTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI-  187 (199)
T ss_dssp             --------------CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred             --------------hhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC-
Confidence                          55788888888877632  35777888888888888887663  477888888888888888743 


Q ss_pred             CcccccCCCCCEE
Q 037315          577 PHQLVELKELAVF  589 (693)
Q Consensus       577 ~~~l~~l~~L~~L  589 (693)
                      + .+..+++|+.|
T Consensus       188 ~-~l~~L~~L~~L  199 (199)
T d2omxa2         188 S-VLAKLTNLESL  199 (199)
T ss_dssp             G-GGGGCTTCSEE
T ss_pred             c-cccCCCCCCcC
Confidence            2 46777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.9e-15  Score=138.65  Aligned_cols=54  Identities=24%  Similarity=0.270  Sum_probs=29.5

Q ss_pred             ccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEE
Q 037315          383 FFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLL  440 (693)
Q Consensus       383 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  440 (693)
                      +..+++|++|++++|.+++..  .+.++++|++|++++|++++.  ..++.+++|++|
T Consensus       146 l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         146 LSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            445556666666666555321  255666666666666666532  235555666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-16  Score=154.53  Aligned_cols=182  Identities=22%  Similarity=0.245  Sum_probs=114.7

Q ss_pred             CCCCEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCC-cCcccCChhhhhcCCCCcE
Q 037315          120 HDLEDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNN-NFQGHIPVEIGDILPRLIS  198 (693)
Q Consensus       120 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~  198 (693)
                      .+|++|+++++.+.+.....++.++++|++|+++++.+++.....+..+++|++|++++| .+++.....+.+.+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            467888888777765554555678888888888888877666666777788888888885 4543222334455788888


Q ss_pred             EEccCCc-cccc-CCccCC-CCCCCCEEEcccCc--cccccchHHhhCCCCCcEEEccccc-cccccCccCCCCCCCCeE
Q 037315          199 FNISMNA-LDGS-IPSSFG-NMNLLQILDLSNNQ--LTGEIPEHLAMGCVNLEFLALSNNS-LKGHMFSRNFNLINLRWL  272 (693)
Q Consensus       199 L~L~~n~-i~~~-~~~~~~-~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  272 (693)
                      |++++|. +++. ....+. ..+.|+.|+++++.  +++..-..+..++++|++|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            8888763 3321 111122 24677888887652  3322222334457778888887753 555555566667777777


Q ss_pred             eccCc-cccccCCcCCcCCCCCCEEeccCC
Q 037315          273 QLEGN-HFVGEIPQSLSKCSSLEGLYLNNN  301 (693)
Q Consensus       273 ~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  301 (693)
                      ++++| .+++.....++.+++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77775 454444445566666777766665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.2e-16  Score=151.76  Aligned_cols=224  Identities=16%  Similarity=0.174  Sum_probs=148.4

Q ss_pred             CEEEccCccccccCchhhhhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEcc
Q 037315          123 EDVHFSRIQMNGEFPNWLLENNTKLRQLSLVNDSLAGPFRLPIHSHRHLRLLDVSNNNFQGHIPVEIGDILPRLISFNIS  202 (693)
Q Consensus       123 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~  202 (693)
                      +++|+++..+.......+..  .....+.++...+.... .......+|++||++++.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35666666554333333322  23456666665544322 2233456889999998887755445556668899999999


Q ss_pred             CCcccccCCccCCCCCCCCEEEcccC-ccccccchHHhhCCCCCcEEEccccc-ccccc-CccC-CCCCCCCeEeccCcc
Q 037315          203 MNALDGSIPSSFGNMNLLQILDLSNN-QLTGEIPEHLAMGCVNLEFLALSNNS-LKGHM-FSRN-FNLINLRWLQLEGNH  278 (693)
Q Consensus       203 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~-~~l~~L~~L~L~~n~  278 (693)
                      +|.+++..+..++++++|++|++++| .+++..-..+..++++|++|++++|. +++.. ...+ ...++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99888777777888899999999986 45432223344568999999998864 43211 1112 234789999998753


Q ss_pred             --cccc-CCcCCcCCCCCCEEeccCC-cccccCCccccCCCCCcEEEccCC-ccccCccccccCCCCCCEEECcCC
Q 037315          279 --FVGE-IPQSLSKCSSLEGLYLNNN-SLSGKIPRWLGNLTWLIHIIMPKN-HLEGPIPVEFCHLYSLQILDISDN  349 (693)
Q Consensus       279 --l~~~-~~~~l~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n  349 (693)
                        ++.. +......+++|++|++++| .+++.....+..+++|++|++++| .+++.....+..+++|+.|++++|
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              3321 1222356788999999886 466666677788888999998886 455555556778888888888876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.8e-15  Score=129.20  Aligned_cols=79  Identities=19%  Similarity=0.182  Sum_probs=48.7

Q ss_pred             cCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccCC---cccccCCCCC
Q 037315          512 SLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIP---HQLVELKELA  587 (693)
Q Consensus       512 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~  587 (693)
                      ++|++|++++|++++..+..+..+++|++|++++|++++... ..+..+++|++|++++|+++....   ..+..+|+|+
T Consensus        63 ~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             cchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence            345555555555554444455666677777777777665432 456667777777777777763321   2456677777


Q ss_pred             EEe
Q 037315          588 VFS  590 (693)
Q Consensus       588 ~L~  590 (693)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-14  Score=126.96  Aligned_cols=129  Identities=20%  Similarity=0.153  Sum_probs=104.5

Q ss_pred             cccCCCCCcEEeCcCcccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCccc
Q 037315          382 TFFNCSSLVTLDLSYNLLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLH  461 (693)
Q Consensus       382 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~  461 (693)
                      .|.++.++++|+|++|+|+. ++..+..+++|+.|++++|+++..  +.+..+++|++|++++|+++...+..+..    
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~----   85 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----   85 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH----
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccc----
Confidence            46677889999999999985 466678899999999999999854  35888999999999999998766554433    


Q ss_pred             cccCCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCc-hhhccCCCCCe
Q 037315          462 ESYNNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIP-PQVGNLTRIQT  540 (693)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~  540 (693)
                                                                       +++|+.|++++|++..... ..+..+++|++
T Consensus        86 -------------------------------------------------l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          86 -------------------------------------------------LPDLTELILTNNSLVELGDLDPLASLKSLTY  116 (162)
T ss_dssp             -------------------------------------------------CTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             -------------------------------------------------ccccccceeccccccccccccccccccccch
Confidence                                                             5689999999999875432 46888999999


Q ss_pred             eeCCCccCCccC---cccccCCCCCCEEe
Q 037315          541 LNLSHNNLTGLI---PSTFSNLKQIESLD  566 (693)
Q Consensus       541 L~Ls~n~l~~~~---~~~~~~l~~L~~L~  566 (693)
                      |++++|.++...   +..+..+++|++||
T Consensus       117 L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         117 LCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999999998664   23577889999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.7e-14  Score=122.82  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=94.8

Q ss_pred             CcceEECCCCcccccCchhhccCCCCCeeeCCCc-cCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEEec
Q 037315          513 LLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHN-NLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSV  591 (693)
Q Consensus       513 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  591 (693)
                      ..+.++.+++++. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+.+.|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4567888888887 46778888999999999766 588888889999999999999999999888999999999999999


Q ss_pred             CCCcCcccCCCCccccCcCCcccccCccCCCCCCC
Q 037315          592 AYNNLSGEIPEWKAQFATFNENSYEGNTFLCGLPL  626 (693)
Q Consensus       592 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  626 (693)
                      ++|+++...+..+ +...+..+++++|||.|+|..
T Consensus        88 s~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhh-ccccccccccCCCcccCCchH
Confidence            9999995555544 444788999999999999865

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.3e-13  Score=112.20  Aligned_cols=86  Identities=31%  Similarity=0.461  Sum_probs=74.4

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccC-CcccccCCCCCEE
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKI-PHQLVELKELAVF  589 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L  589 (693)
                      ++.|++|++++|+++ .+|..++.+++|++|++++|.++++  +.+..+++|++|++++|++.... ...+..+++|+.+
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            568999999999998 4577899999999999999999976  35899999999999999998654 3578899999999


Q ss_pred             ecCCCcCccc
Q 037315          590 SVAYNNLSGE  599 (693)
Q Consensus       590 ~l~~N~l~~~  599 (693)
                      ++++|+++..
T Consensus        96 ~l~~N~i~~~  105 (124)
T d1dcea3          96 NLQGNSLCQE  105 (124)
T ss_dssp             ECTTSGGGGS
T ss_pred             ECCCCcCCcC
Confidence            9999999753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.7e-13  Score=112.70  Aligned_cols=77  Identities=26%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             ccCcceEECCCCcccccCchhhccCCCCCeeeCCCccCCccCc-ccccCCCCCCEEeCCCccccccC---CcccccCCCC
Q 037315          511 LSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLSHNNLTGLIP-STFSNLKQIESLDLSYNKLNGKI---PHQLVELKEL  586 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~l~~L  586 (693)
                      +++|++|++++|++++. | .+..+++|++|++++|++++... ..+..+++|++|++++|+++...   ......+|+|
T Consensus        42 l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L  119 (124)
T d1dcea3          42 LRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  119 (124)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             hhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCc
Confidence            34566666666666543 2 46777888888888888876643 56777888888888888886432   2234446666


Q ss_pred             CEE
Q 037315          587 AVF  589 (693)
Q Consensus       587 ~~L  589 (693)
                      +.+
T Consensus       120 ~~L  122 (124)
T d1dcea3         120 SSI  122 (124)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=3.3e-14  Score=142.91  Aligned_cols=245  Identities=17%  Similarity=0.160  Sum_probs=138.3

Q ss_pred             chhccCCCCCCEEECCCCCCCCc----CCccccCCCCCCCEEECCCCcCcCcC---C------cccccCCCCCcEEEccC
Q 037315           11 PWCLANMTSLRILDVSSNQLTGS----ISSSPLFYLTSIEELSLSNNHFHIPI---S------LEPLFNHSRLKIFYADN   77 (693)
Q Consensus        11 ~~~~~~l~~L~~L~Ls~n~l~~~----l~~~~~~~l~~L~~L~Ls~n~~~~~~---~------~~~~~~l~~L~~L~l~~   77 (693)
                      ..++.+.+.|++|+|++|.+...    +.. .+...++|+.|+++++......   +      ...+..+++|++|++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSE-NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHH-TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHH-HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            34566678888888888877531    222 4566788888888877542111   1      12345567788888888


Q ss_pred             CccccccccccCCCCCCccccEEecCCCCCCCCcCchhhcCCCCCCEEEccCccccccCch------------hhhhcCC
Q 037315           78 NPINAKITKSHTLTTPKFQLASLSLSSSYGDGVTFPKFLYYQHDLEDVHFSRIQMNGEFPN------------WLLENNT  145 (693)
Q Consensus        78 n~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------------~~~~~~~  145 (693)
                      |.+.......                        +...+...++|++|++++|.+......            ......+
T Consensus       103 n~i~~~~~~~------------------------l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~  158 (344)
T d2ca6a1         103 NAFGPTAQEP------------------------LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP  158 (344)
T ss_dssp             CCCCTTTHHH------------------------HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccc------------------------hhhhhcccccchheecccccccccccccccccccccccccccccCc
Confidence            7765432222                        122333455566666665554321110            0113456


Q ss_pred             CCCEEEccCCcccccC----CCCCCCCCCCCEEEccCCcCcccCC----hhhhhcCCCCcEEEccCCccccc----CCcc
Q 037315          146 KLRQLSLVNDSLAGPF----RLPIHSHRHLRLLDVSNNNFQGHIP----VEIGDILPRLISFNISMNALDGS----IPSS  213 (693)
Q Consensus       146 ~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~i~~~----~~~~  213 (693)
                      .|+.+.++++.+....    ...+..++.|+.|++++|.++....    ......+++|+.|++++|.++..    +...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            6777777766655322    1223445667777777776653211    11122356777777777766532    2334


Q ss_pred             CCCCCCCCEEEcccCccccccchHHhh-----CCCCCcEEEccccccccccCc----cC-CCCCCCCeEeccCcccc
Q 037315          214 FGNMNLLQILDLSNNQLTGEIPEHLAM-----GCVNLEFLALSNNSLKGHMFS----RN-FNLINLRWLQLEGNHFV  280 (693)
Q Consensus       214 ~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~----~~-~~l~~L~~L~L~~n~l~  280 (693)
                      +..+++|++|++++|.+.+.....+..     ..+.|++|++++|.+......    .+ .+.++|++|++++|.+.
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            566777777777777776432222211     235678888888877643211    22 14567888888888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=8.1e-14  Score=140.00  Aligned_cols=240  Identities=16%  Similarity=0.149  Sum_probs=135.7

Q ss_pred             chhhcCCCCCCEEEccCccccccCchhh---hhcCCCCCEEEccCCccccc----------CCCCCCCCCCCCEEEccCC
Q 037315          113 PKFLYYQHDLEDVHFSRIQMNGEFPNWL---LENNTKLRQLSLVNDSLAGP----------FRLPIHSHRHLRLLDVSNN  179 (693)
Q Consensus       113 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----------~~~~l~~~~~L~~L~l~~n  179 (693)
                      ...+....++++|++++|.+.......+   +...++|+.++++++.....          +...+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3455666777777777776654332222   24556777777776543211          1122445677777777777


Q ss_pred             cCcccCChhhh---hcCCCCcEEEccCCcccccCCcc-------------CCCCCCCCEEEcccCccccccchHH---hh
Q 037315          180 NFQGHIPVEIG---DILPRLISFNISMNALDGSIPSS-------------FGNMNLLQILDLSNNQLTGEIPEHL---AM  240 (693)
Q Consensus       180 ~~~~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~---~~  240 (693)
                      .++......+.   ...++|++|++++|.+.......             ....+.|+.+++++|.+.......+   ..
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            76543222222   22567777777777654211110             1245677777777776653222111   22


Q ss_pred             CCCCCcEEEccccccccc-----cCccCCCCCCCCeEeccCcccccc----CCcCCcCCCCCCEEeccCCcccccCCc--
Q 037315          241 GCVNLEFLALSNNSLKGH-----MFSRNFNLINLRWLQLEGNHFVGE----IPQSLSKCSSLEGLYLNNNSLSGKIPR--  309 (693)
Q Consensus       241 ~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~--  309 (693)
                      .++.|++|++++|.+...     ....+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++....  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            466777788777776542     223455667777777777776532    223455677777777777776643222  


Q ss_pred             --ccc--CCCCCcEEEccCCccccCc----ccccc-CCCCCCEEECcCCcCC
Q 037315          310 --WLG--NLTWLIHIIMPKNHLEGPI----PVEFC-HLYSLQILDISDNNIS  352 (693)
Q Consensus       310 --~l~--~l~~L~~L~l~~n~~~~~~----~~~~~-~l~~L~~L~l~~n~~~  352 (693)
                        .+.  ..+.|++|++++|.+....    ...+. .+++|+.|++++|.+.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence              222  2355777777777765322    12222 4566777777777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.7e-12  Score=111.51  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=74.6

Q ss_pred             ccCcceEECCCC-cccccCchhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCcccccCCCCCEE
Q 037315          511 LSLLSGLDLSCN-KLIGHIPPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVF  589 (693)
Q Consensus       511 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  589 (693)
                      +++|++|++++| .++.+.+..|.++++|+.|++++|+|+.+.+.+|.++++|++|+|++|+++...+..+.. .+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence            446788888765 477777788999999999999999999998999999999999999999999666655554 479999


Q ss_pred             ecCCCcCcccC
Q 037315          590 SVAYNNLSGEI  600 (693)
Q Consensus       590 ~l~~N~l~~~~  600 (693)
                      ++++|++.|.+
T Consensus       109 ~L~~Np~~C~C  119 (156)
T d2ifga3         109 VLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCCCCG
T ss_pred             ccCCCcccCCc
Confidence            99999998644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=3.1e-14  Score=129.64  Aligned_cols=150  Identities=21%  Similarity=0.267  Sum_probs=111.5

Q ss_pred             CCCcEEeCcCc--ccCCCcchhhhCCCCCCEEEccCCcccccCCcccCCCCCCCEEEccCCcCcccCCCCcccCcccccc
Q 037315          387 SSLVTLDLSYN--LLNGSIPDWIDGLSQLSHLILGNNNLEGEVPVQLCGLNQLQLLDLSNNNLHGLIPPCFDNTKLHESY  464 (693)
Q Consensus       387 ~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~  464 (693)
                      ...+.+++++.  .+. ..+..+..+++|++|++++|+++.. + .+.++++|++|++++|+++.+. ..+..       
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i~-~~~~~-------   91 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIE-NLDAV-------   91 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSCS-SHHHH-------
T ss_pred             cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccccc-ccccc-------
Confidence            34555666553  233 4567788899999999999999843 3 5888899999999999886432 11111       


Q ss_pred             CCCCCCchhhhHhhhhcccCCcccccccceeeeecccceeeeccccccCcceEECCCCcccccCchhhccCCCCCeeeCC
Q 037315          465 NNSSSPDEQFKILFSIKGHQGHVEKKIQEFFEFTTKNIAYIFQGKVLSLLSGLDLSCNKLIGHIPPQVGNLTRIQTLNLS  544 (693)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  544 (693)
                                                                    ++.|+.|++++|+++..  ..+..+++|++|+++
T Consensus        92 ----------------------------------------------~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          92 ----------------------------------------------ADTLEELWISYNQIASL--SGIEKLVNLRVLYMS  123 (198)
T ss_dssp             ----------------------------------------------HHHCCEEECSEEECCCH--HHHHHHHHSSEEEES
T ss_pred             ----------------------------------------------ccccccccccccccccc--ccccccccccccccc
Confidence                                                          34689999999998854  458889999999999


Q ss_pred             CccCCccCc-ccccCCCCCCEEeCCCccccccCCcc----------cccCCCCCEEecCCCcCc
Q 037315          545 HNNLTGLIP-STFSNLKQIESLDLSYNKLNGKIPHQ----------LVELKELAVFSVAYNNLS  597 (693)
Q Consensus       545 ~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~l~~N~l~  597 (693)
                      +|++++... ..+..+++|+.|++++|++....+..          +..+|+|+.||  +.+++
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999987643 56889999999999999987554432          56788898887  44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=4.4e-13  Score=121.88  Aligned_cols=115  Identities=27%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             cCChhhhhcCCCCcEEEccCCcccccCCccCCCCCCCCEEEcccCccccccchHHhhCCCCCcEEEccccccccccCccC
Q 037315          184 HIPVEIGDILPRLISFNISMNALDGSIPSSFGNMNLLQILDLSNNQLTGEIPEHLAMGCVNLEFLALSNNSLKGHMFSRN  263 (693)
Q Consensus       184 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  263 (693)
                      .++..+.. +++|++|++++|.|+.. + .+..+++|++|++++|.++ .++.... .+++|++|++++|+++..  ..+
T Consensus        39 ~l~~sl~~-L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~-~~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          39 KMDATLST-LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             CCHHHHHH-TTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHH-HHHHCCEEECSEEECCCH--HHH
T ss_pred             hhhhHHhc-ccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccc-cccccccccccccccccc--ccc
Confidence            33444444 66777777777777633 2 4667777777777777776 5554332 245677777777777653  235


Q ss_pred             CCCCCCCeEeccCccccccCC-cCCcCCCCCCEEeccCCcccc
Q 037315          264 FNLINLRWLQLEGNHFVGEIP-QSLSKCSSLEGLYLNNNSLSG  305 (693)
Q Consensus       264 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~  305 (693)
                      ..+++|++|++++|+++.... ..+..+++|+.|++++|++..
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            556667777777776653211 345666667777777666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.9e-08  Score=86.14  Aligned_cols=80  Identities=24%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             ccCcceEECCCCcccccC--chhhccCCCCCeeeCCCccCCccCcccccCCCCCCEEeCCCccccccCCc-------ccc
Q 037315          511 LSLLSGLDLSCNKLIGHI--PPQVGNLTRIQTLNLSHNNLTGLIPSTFSNLKQIESLDLSYNKLNGKIPH-------QLV  581 (693)
Q Consensus       511 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~  581 (693)
                      ++.|++|+|++|+++...  +..+..+++|+.|+|++|.|+.+.+-.+.....|+.|++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            445666666666666432  34466777888888888888776553444455678888888888654432       245


Q ss_pred             cCCCCCEEe
Q 037315          582 ELKELAVFS  590 (693)
Q Consensus       582 ~l~~L~~L~  590 (693)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            678888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-07  Score=81.57  Aligned_cols=75  Identities=24%  Similarity=0.229  Sum_probs=60.5

Q ss_pred             cCchhhccCCCCCeeeCCCccCCccC--cccccCCCCCCEEeCCCccccccCCcccccCCCCCEEecCCCcCcccCC
Q 037315          527 HIPPQVGNLTRIQTLNLSHNNLTGLI--PSTFSNLKQIESLDLSYNKLNGKIPHQLVELKELAVFSVAYNNLSGEIP  601 (693)
Q Consensus       527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  601 (693)
                      .++..+..+++|++|+|++|+|+.+.  +..+..+++|+.|+|++|.|+...+-.+.....|+.+++++|++.+...
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            33445678999999999999999874  3557789999999999999996555444556689999999999987544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.47  E-value=2.5e-05  Score=67.40  Aligned_cols=73  Identities=14%  Similarity=0.232  Sum_probs=49.7

Q ss_pred             ccCCCCCCEEECCCC-CCCCc----CCccccCCCCCCCEEECCCCcCcCcC--C-cccccCCCCCcEEEccCCccccccc
Q 037315           14 LANMTSLRILDVSSN-QLTGS----ISSSPLFYLTSIEELSLSNNHFHIPI--S-LEPLFNHSRLKIFYADNNPINAKIT   85 (693)
Q Consensus        14 ~~~l~~L~~L~Ls~n-~l~~~----l~~~~~~~l~~L~~L~Ls~n~~~~~~--~-~~~~~~l~~L~~L~l~~n~~~~~~~   85 (693)
                      ..+.++|++|+|+++ .++..    +.. .+...++|++|+|++|.+....  . ...+...+.|++|++++|.++....
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~-~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHH-HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            345688999999874 46532    222 4667788999999999885321  1 1244567889999999988876544


Q ss_pred             cc
Q 037315           86 KS   87 (693)
Q Consensus        86 ~~   87 (693)
                      ..
T Consensus        90 ~~   91 (167)
T d1pgva_          90 AR   91 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=2.4e-05  Score=67.49  Aligned_cols=60  Identities=17%  Similarity=0.026  Sum_probs=26.0

Q ss_pred             CCCCCEEeccCCccccc----CCccccCCCCCcEEEccCCccccC-------ccccccCCCCCCEEECcCC
Q 037315          290 CSSLEGLYLNNNSLSGK----IPRWLGNLTWLIHIIMPKNHLEGP-------IPVEFCHLYSLQILDISDN  349 (693)
Q Consensus       290 l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~-------~~~~~~~l~~L~~L~l~~n  349 (693)
                      .+.|++|++++|.+++.    +...+...+.|++|++++|.....       +...+...++|+.|+++.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34455555555544421    112233344455555554433211       1222334556666665544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.06  E-value=4.4e-05  Score=65.78  Aligned_cols=78  Identities=17%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             cCcchhccCCCCCCEEECCC-CCCCCc----CCccccCCCCCCCEEECCCCcCcCcCC---cccccCCCCCcEEEccCCc
Q 037315            8 GSLPWCLANMTSLRILDVSS-NQLTGS----ISSSPLFYLTSIEELSLSNNHFHIPIS---LEPLFNHSRLKIFYADNNP   79 (693)
Q Consensus         8 ~~~~~~~~~l~~L~~L~Ls~-n~l~~~----l~~~~~~~l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~l~~n~   79 (693)
                      ..+.....+.+.|++|+|++ +.++..    +.. ++...++|++|++++|.++....   ...+...+.++.+++++|.
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~-al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHH-HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            33445556779999999997 456532    222 45678899999999998753211   1244567889999988888


Q ss_pred             ccccccc
Q 037315           80 INAKITK   86 (693)
Q Consensus        80 ~~~~~~~   86 (693)
                      +......
T Consensus        86 ~~~~g~~   92 (166)
T d1io0a_          86 ISGSGIL   92 (166)
T ss_dssp             CCHHHHH
T ss_pred             ccchhHH
Confidence            7655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.75  E-value=0.00027  Score=60.55  Aligned_cols=112  Identities=13%  Similarity=0.216  Sum_probs=48.5

Q ss_pred             hcCCCCCEEEccC-Cccccc----CCCCCCCCCCCCEEEccCCcCcccCChhhh---hcCCCCcEEEccCCccccc----
Q 037315          142 ENNTKLRQLSLVN-DSLAGP----FRLPIHSHRHLRLLDVSNNNFQGHIPVEIG---DILPRLISFNISMNALDGS----  209 (693)
Q Consensus       142 ~~~~~L~~L~l~~-~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~L~~n~i~~~----  209 (693)
                      .+.++|++|++++ +.++..    +...+...++|++|++++|.++......++   ...+.++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3445555555554 233321    122233455566666666655432222221   1234566666666555421    


Q ss_pred             CCccCCCCCCCCEEEcc--cCccccccchHH---hhCCCCCcEEEcccc
Q 037315          210 IPSSFGNMNLLQILDLS--NNQLTGEIPEHL---AMGCVNLEFLALSNN  253 (693)
Q Consensus       210 ~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~---~~~l~~L~~L~l~~n  253 (693)
                      +...+...+.|+.++|+  +|.+.......+   ....++|++|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            12334455566654443  334432111111   113555666655544