Citrus Sinensis ID: 037330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccEEEEccccccccccEEEEcccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEcccccccccccEEEccHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
EGDAPATEEAKKSSHVLRKLEKrqkdrtldphieeqfgsgrlLACIasrpgqcgradgyileGKELEFYMKKLQRkkgkgagaa
Flexible Loop (DISEMBL)
egdapateeakksshvLRKLekrqkdrtldphieeqfgsgrlLACIASRPGQCGRADGYILEGKELEFYMKKlqrkkgkgagaa
Low Complexity Region (SEG)
EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Disordered region (IsUnstruct)
************************************FGSGRLLACIASRPGQCGRADGYILEGKELEFYM**************
Disordered Region (DISOPRED)
********************************IEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKK************
Disordered Region (DISEMBL)
****************LRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKL***********
Disordered Region (DISPRO)
***************VLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
P49199	220	40S ribosomal protein S8	yes	no	0.964	0.368	0.890	1e-35
Q08069	221	40S ribosomal protein S8	N/A	no	0.928	0.352	0.871	6e-34
Q9FIF3	210	40S ribosomal protein S8-	yes	no	1.0	0.4	0.809	2e-28
O81361	221	40S ribosomal protein S8	N/A	no	0.773	0.294	0.830	3e-25
Q93VG5	222	40S ribosomal protein S8-	no	no	0.714	0.270	0.8	5e-24
Q8MLY8	208	40S ribosomal protein S8	yes	no	0.797	0.322	0.626	1e-18
Q7SYU0	208	40S ribosomal protein S8	N/A	no	0.702	0.283	0.694	3e-18
Q90YR6	208	40S ribosomal protein S8	N/A	no	0.714	0.288	0.65	3e-18
O76756	208	40S ribosomal protein S8	yes	no	0.821	0.331	0.594	4e-18
Q8WQI5	208	40S ribosomal protein S8	N/A	no	0.880	0.355	0.567	5e-18

>sp|P49199|RS8_ORYSJ 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/82 (89%), Positives = 77/82 (93%), Gaps = 1/82 (1%)

Query: 3   DAPAT-EEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYIL 61
           DA AT EEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYIL
Sbjct: 139 DAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYIL 198

Query: 62  EGKELEFYMKKLQRKKGKGAGA 83
           EGKELEFYMKKLQRKKGKGA A
Sbjct: 199 EGKELEFYMKKLQRKKGKGASA 220

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/78 (87%), Positives = 72/78 (92%)

Query: 6   ATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKE 65
           A EE KKS+HV RKLEKR++ RTLDPHIEEQFGSGRLLACI+SRPGQCGRADGYILEGKE
Sbjct: 144 AAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKE 203

Query: 66  LEFYMKKLQRKKGKGAGA 83
           LEFYMKKLQRKKGK A A
Sbjct: 204 LEFYMKKLQRKKGKSAVA 221

Zea mays (taxid: 4577)

>sp|Q9FIF3|RS82_ARATH 40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 74/84 (88%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           +G+A  TEE KKS+HV RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGRADGYI
Sbjct: 127 KGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYI 186

Query: 61  LEGKELEFYMKKLQRKKGKGAGAA 84
           LEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 187 LEGKELEFYMKKLQKKKGKNAGAA 210

Arabidopsis thaliana (taxid: 3702)

>sp|O81361|RS8_PRUAR 40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 59/65 (90%)

Query: 11  KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYM 70
           KKS+HV  KLEKRQ+ RTLD HIEEQFG G+LLACI+SRPGQCG+ADG ILEGKELEFYM
Sbjct: 147 KKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYM 206

Query: 71  KKLQR 75
           KKLQR
Sbjct: 207 KKLQR 211

Prunus armeniaca (taxid: 36596)

>sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 55/60 (91%)

Query: 11  KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYM 70
           KKS+H+LRK+  RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGRADGYILEGKELEFYM
Sbjct: 151 KKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYM 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 56/67 (83%)

Query: 11  KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYM 70
           K+S  V++K  +RQK   ++  +E+QF SGR+LACI+SRPGQCGR+DGYILEGKELEFY+
Sbjct: 142 KRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYL 201

Query: 71  KKLQRKK 77
           KK++ KK
Sbjct: 202 KKIKSKK 208

Drosophila melanogaster (taxid: 7227)

>sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 51/59 (86%)

Query: 21  EKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 79
           E+R+K   + P +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct: 150 EERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Xenopus laevis (taxid: 8355)

>sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 52/60 (86%)

Query: 20  LEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 79
            +KR+K+  + P ++EQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct: 149 FDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208

Ictalurus punctatus (taxid: 7998)

>sp|O76756|RS8_APIME 40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 54/69 (78%)

Query: 11  KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYM 70
           K+S     K + RQ+   ++P +EEQF +GR+LACI+SRPGQCGR DGYILEGKELEFYM
Sbjct: 140 KRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYM 199

Query: 71  KKLQRKKGK 79
           ++++ KK K
Sbjct: 200 RRIKSKKAK 208

Apis mellifera (taxid: 7460)

>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 55/74 (74%)

Query: 6   ATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKE 65
           A    K+S    +K   RQ+   ++  +EEQF +GRLLAC+ASRPGQCGRADGYILEGKE
Sbjct: 135 AIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQCGRADGYILEGKE 194

Query: 66  LEFYMKKLQRKKGK 79
           LEFY++K++ K+ K
Sbjct: 195 LEFYLRKIKSKRAK 208

Spodoptera frugiperda (taxid: 7108)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
115457852	221	Os04g0349500 [Oryza sativa Japonica Grou	0.976	0.371	0.891	6e-35
125547847	221	hypothetical protein OsI_15456 [Oryza sa	0.976	0.371	0.891	7e-35
449461203	219	PREDICTED: 40S ribosomal protein S8-like	0.988	0.378	0.869	8e-35
115446173	220	Os02g0489400 [Oryza sativa Japonica Grou	0.964	0.368	0.890	5e-34
149391819	168	40S ribosomal protein S8 [Oryza sativa I	0.976	0.488	0.879	6e-34
224127352	220	predicted protein [Populus trichocarpa]	0.988	0.377	0.857	8e-34
968902	220	ribosomal protein S8 [Oryza sativa Japon	0.964	0.368	0.890	2e-33
224056425	218	predicted protein [Populus trichocarpa]	0.976	0.376	0.855	5e-33
225460793	219	PREDICTED: 40S ribosomal protein S8-like	0.976	0.374	0.831	1e-32
297737524	212	unnamed protein product [Vitis vinifera]	0.976	0.386	0.831	1e-32

>gi|115457852|ref|NP_001052526.1| Os04g0349500 [Oryza sativa Japonica Group] gi|32489919|emb|CAE05511.1| OSJNBa0038P21.4 [Oryza sativa Japonica Group] gi|113564097|dbj|BAF14440.1| Os04g0349500 [Oryza sativa Japonica Group] gi|125589973|gb|EAZ30323.1| hypothetical protein OsJ_14370 [Oryza sativa Japonica Group] gi|215686988|dbj|BAG90858.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 79/83 (95%), Gaps = 1/83 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EG+A ATEEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYI
Sbjct: 140 EGEA-ATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYI 198

Query: 61  LEGKELEFYMKKLQRKKGKGAGA 83
           LEGKELEFYMKKLQRKKGKGA A
Sbjct: 199 LEGKELEFYMKKLQRKKGKGAAA 221

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125547847|gb|EAY93669.1| hypothetical protein OsI_15456 [Oryza sativa Indica Group]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 79/83 (95%), Gaps = 1/83 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EG+A ATEEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYI
Sbjct: 140 EGEA-ATEEAKKSNHVVRKLEKRQQTRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYI 198

Query: 61  LEGKELEFYMKKLQRKKGKGAGA 83
           LEGKELEFYMKKLQRKKGKGA A
Sbjct: 199 LEGKELEFYMKKLQRKKGKGAAA 221

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461203|ref|XP_004148331.1| PREDICTED: 40S ribosomal protein S8-like [Cucumis sativus] gi|449507060|ref|XP_004162922.1| PREDICTED: 40S ribosomal protein S8-like [Cucumis sativus]

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 78/84 (92%), Gaps = 1/84 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EGDA  TEE KKS+HV RK+EKRQ+DR LDPHIEEQF SGRL+ACI+SRPGQCGRADGYI
Sbjct: 137 EGDA-GTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYI 195

Query: 61  LEGKELEFYMKKLQRKKGKGAGAA 84
           LEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 196 LEGKELEFYMKKLQRKKGKGAGAA 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115446173|ref|NP_001046866.1| Os02g0489400 [Oryza sativa Japonica Group] gi|109940162|sp|P49199.2|RS8_ORYSJ RecName: Full=40S ribosomal protein S8 gi|47848087|dbj|BAD21871.1| putative 40S ribosomal protein S8 [Oryza sativa Japonica Group] gi|47848093|dbj|BAD21876.1| putative 40S ribosomal protein S8 [Oryza sativa Japonica Group] gi|113536397|dbj|BAF08780.1| Os02g0489400 [Oryza sativa Japonica Group] gi|215734981|dbj|BAG95703.1| unnamed protein product [Oryza sativa Japonica Group] gi|218190769|gb|EEC73196.1| hypothetical protein OsI_07259 [Oryza sativa Indica Group] gi|222622880|gb|EEE57012.1| hypothetical protein OsJ_06781 [Oryza sativa Japonica Group]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/82 (89%), Positives = 77/82 (93%), Gaps = 1/82 (1%)

Query: 3   DAPAT-EEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYIL 61
           DA AT EEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYIL
Sbjct: 139 DAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYIL 198

Query: 62  EGKELEFYMKKLQRKKGKGAGA 83
           EGKELEFYMKKLQRKKGKGA A
Sbjct: 199 EGKELEFYMKKLQRKKGKGASA 220

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149391819|gb|ABR25841.1| 40S ribosomal protein S8 [Oryza sativa Indica Group]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 78/83 (93%), Gaps = 1/83 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EG+A ATEE KKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYI
Sbjct: 87  EGEA-ATEEEKKSNHVVRKLEKRQQTRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYI 145

Query: 61  LEGKELEFYMKKLQRKKGKGAGA 83
           LEGKELEFYMKKLQRKKGKGA A
Sbjct: 146 LEGKELEFYMKKLQRKKGKGAAA 168

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127352|ref|XP_002329256.1| predicted protein [Populus trichocarpa] gi|222870710|gb|EEF07841.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 78/84 (92%), Gaps = 1/84 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EG+A  TEE KKS+HV+RKLEKRQ+ R LDPHIEEQFGSGRLLA I+SRPGQCGRADGYI
Sbjct: 138 EGEA-TTEETKKSNHVIRKLEKRQQVRKLDPHIEEQFGSGRLLASISSRPGQCGRADGYI 196

Query: 61  LEGKELEFYMKKLQRKKGKGAGAA 84
           LEGKELEFYMKK+QRKKGKGAGAA
Sbjct: 197 LEGKELEFYMKKIQRKKGKGAGAA 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|968902|dbj|BAA07207.1| ribosomal protein S8 [Oryza sativa Japonica Group]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/82 (89%), Positives = 77/82 (93%), Gaps = 1/82 (1%)

Query: 3   DAPAT-EEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYIL 61
           DA AT EEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYIL
Sbjct: 139 DAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYIL 198

Query: 62  EGKELEFYMKKLQRKKGKGAGA 83
           EGKELEFYMKKLQRKKGKGA A
Sbjct: 199 EGKELEFYMKKLQRKKGKGASA 220

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056425|ref|XP_002298850.1| predicted protein [Populus trichocarpa] gi|222846108|gb|EEE83655.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/83 (85%), Positives = 77/83 (92%), Gaps = 1/83 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EG+A  TEE KKS+HVLRKLEKRQ+ R LDPHIEEQFGSGRLLA I+SRPGQCGRADGYI
Sbjct: 137 EGEA-VTEEVKKSNHVLRKLEKRQQIRKLDPHIEEQFGSGRLLASISSRPGQCGRADGYI 195

Query: 61  LEGKELEFYMKKLQRKKGKGAGA 83
           LEGKELEFY+KK+QRKKGKGAGA
Sbjct: 196 LEGKELEFYLKKIQRKKGKGAGA 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460793|ref|XP_002275094.1| PREDICTED: 40S ribosomal protein S8-like [Vitis vinifera]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 76/83 (91%), Gaps = 1/83 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EGD PA EE KKS+HV+RKLEKRQ++  LDPHIEEQFGSGRLLA I+SRPGQCGRADGYI
Sbjct: 138 EGDGPA-EETKKSNHVVRKLEKRQQEHKLDPHIEEQFGSGRLLAAISSRPGQCGRADGYI 196

Query: 61  LEGKELEFYMKKLQRKKGKGAGA 83
           LEGKELEFYMKK+QRKKGKG+ A
Sbjct: 197 LEGKELEFYMKKIQRKKGKGSAA 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737524|emb|CBI26725.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 76/83 (91%), Gaps = 1/83 (1%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           EGD PA EE KKS+HV+RKLEKRQ++  LDPHIEEQFGSGRLLA I+SRPGQCGRADGYI
Sbjct: 131 EGDGPA-EETKKSNHVVRKLEKRQQEHKLDPHIEEQFGSGRLLAAISSRPGQCGRADGYI 189

Query: 61  LEGKELEFYMKKLQRKKGKGAGA 83
           LEGKELEFYMKK+QRKKGKG+ A
Sbjct: 190 LEGKELEFYMKKIQRKKGKGSAA 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
UNIPROTKB|Q0JDZ7	221	OSJNBa0038P21.4 "40S ribosomal	0.976	0.371	0.891	8.3e-35
UNIPROTKB|P49199	220	RPS8 "40S ribosomal protein S8	0.988	0.377	0.882	3.6e-34
TAIR|locus:2168479	210	AT5G59240 "AT5G59240" [Arabido	1.0	0.4	0.809	2.3e-32
TAIR|locus:2149194	222	AT5G20290 "AT5G20290" [Arabido	0.964	0.364	0.753	2.1e-29
UNIPROTKB|A8HVQ1	208	RPS8 "40S ribosomal protein S8	0.916	0.370	0.662	3.3e-24
UNIPROTKB|Q17016	135	Q17016 "Anopheles gambiae puta	0.821	0.511	0.681	2.4e-21
ZFIN|ZDB-GENE-050522-202	208	rps8b "ribosomal protein S8b"	0.892	0.360	0.615	2.7e-20
UNIPROTKB|G8JKY0	207	RPS8 "40S ribosomal protein S8	0.892	0.362	0.564	7.2e-20
UNIPROTKB|Q5E958	208	RPS8 "40S ribosomal protein S8	0.892	0.360	0.564	7.2e-20
UNIPROTKB|E2RFR0	208	RPS8 "40S ribosomal protein S8	0.892	0.360	0.564	7.2e-20

UNIPROTKB|Q0JDZ7 OSJNBa0038P21.4 "40S ribosomal protein S8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 74/83 (89%), Positives = 79/83 (95%)

Query:     1 EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
             EG+A ATEEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYI
Sbjct:   140 EGEA-ATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPGQCGRADGYI 198

Query:    61 LEGKELEFYMKKLQRKKGKGAGA 83
             LEGKELEFYMKKLQRKKGKGA A
Sbjct:   199 LEGKELEFYMKKLQRKKGKGAAA 221

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|P49199 RPS8 "40S ribosomal protein S8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 75/85 (88%), Positives = 79/85 (92%)

Query:     1 EG-DAPAT-EEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADG 58
             EG DA AT EEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADG
Sbjct:   136 EGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADG 195

Query:    59 YILEGKELEFYMKKLQRKKGKGAGA 83
             YILEGKELEFYMKKLQRKKGKGA A
Sbjct:   196 YILEGKELEFYMKKLQRKKGKGASA 220

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

TAIR|locus:2168479 AT5G59240 "AT5G59240" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 68/84 (80%), Positives = 74/84 (88%)

Query:     1 EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
             +G+A  TEE KKS+HV RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGRADGYI
Sbjct:   127 KGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYI 186

Query:    61 LEGKELEFYMKKLQRKKGKGAGAA 84
             LEGKELEFYMKKLQ+KKGK AGAA
Sbjct:   187 LEGKELEFYMKKLQKKKGKNAGAA 210

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2149194 AT5G20290 "AT5G20290" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 61/81 (75%), Positives = 70/81 (86%)

Query:     1 EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
             E    A EE KKS+H+LRK+  RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGRADGYI
Sbjct:   141 EAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYI 200

Query:    61 LEGKELEFYMKKLQRKKGKGA 81
             LEGKELEFYMKK+Q+KKGKGA
Sbjct:   201 LEGKELEFYMKKIQKKKGKGA 221

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|A8HVQ1 RPS8 "40S ribosomal protein S8" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query:     5 PATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGK 64
             P  EE K S+HV RK+++R + R LD H+ EQF +GRL ACI+SRPGQCGR DGYILEGK
Sbjct:   132 PKPEEIKGSNHVKRKIKERLQKRKLDSHLAEQFSTGRLFACISSRPGQCGRCDGYILEGK 191

Query:    65 ELEFYMKKLQRKKGKGA 81
             ELEFY+KK+Q+KK K A
Sbjct:   192 ELEFYVKKMQKKKSKAA 208

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|Q17016 Q17016 "Anopheles gambiae putative ribosomal protein S8" [Anopheles gambiae (taxid:7165)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 47/69 (68%), Positives = 57/69 (82%)

Query:    11 KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYM 70
             K++   LRK  KRQK+  +DP +EEQF +GRLLACI+SRPGQ GRADGYILEGKELEFY+
Sbjct:    67 KRTKSNLRKYVKRQKNAKIDPAVEEQFNAGRLLACISSRPGQVGRADGYILEGKELEFYL 126

Query:    71 KKLQRKKGK 79
             KK++ KK K
Sbjct:   127 KKIKNKKSK 135

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-050522-202 rps8b "ribosomal protein S8b" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 48/78 (61%), Positives = 59/78 (75%)

Query:     5 PATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYIL 61
             P  EE    K+S  V +K+E R+K   +   +EEQF  G+LLACIASRPGQCGRADGYIL
Sbjct:   131 PEEEEILNKKRSKKVQKKIEGRRKKSKISSLLEEQFLQGKLLACIASRPGQCGRADGYIL 190

Query:    62 EGKELEFYMKKLQRKKGK 79
             EGKELEFY++K++ KKGK
Sbjct:   191 EGKELEFYLRKIKAKKGK 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|G8JKY0 RPS8 "40S ribosomal protein S8" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/78 (56%), Positives = 60/78 (76%)

Query:     5 PATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYIL 61
             P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+L
Sbjct:   130 PEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVL 189

Query:    62 EGKELEFYMKKLQRKKGK 79
             EGKELEFY++K++ +KGK
Sbjct:   190 EGKELEFYLRKIKARKGK 207

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5E958 RPS8 "40S ribosomal protein S8" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/78 (56%), Positives = 60/78 (76%)

Query:     5 PATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYIL 61
             P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+L
Sbjct:   131 PEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVL 190

Query:    62 EGKELEFYMKKLQRKKGK 79
             EGKELEFY++K++ +KGK
Sbjct:   191 EGKELEFYLRKIKARKGK 208

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

UNIPROTKB|E2RFR0 RPS8 "40S ribosomal protein S8" [Canis lupus familiaris (taxid:9615)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/78 (56%), Positives = 60/78 (76%)

Query:     5 PATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYIL 61
             P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+L
Sbjct:   131 PEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVL 190

Query:    62 EGKELEFYMKKLQRKKGK 79
             EGKELEFY++K++ +KGK
Sbjct:   191 EGKELEFYLRKIKARKGK 208

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FIF3	RS82_ARATH	No assigned EC number	0.8095	1.0	0.4	yes	no
P49199	RS8_ORYSJ	No assigned EC number	0.8902	0.9642	0.3681	yes	no
Q4UFS9	RS8_THEAN	No assigned EC number	0.7209	0.5119	0.2336	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4335547	ribosomal protein, putative, expressed (221 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4333148	40S ribosomal protein S19, putative (146 aa)				•	•	•	•		0.960
	4332773	60S ribosomal protein L19-3, putative, expressed (208 aa)				•		•	•		0.931
	4333016	40S ribosomal protein S6, putative, expressed (245 aa)			•	•	•	•	•		0.925
	4343945	40S ribosomal protein S6, putative, expressed (250 aa)			•	•	•	•	•		0.921
	OsI_13894	ribosomal protein L4, putative, expressed (404 aa)			•	•	•	•	•		0.921
	4333317	60S ribosomal protein L19-3, putative, expressed (206 aa)				•		•	•		0.919
	4342563	ribosomal protein L4, putative, expressed (405 aa)			•	•	•	•	•		0.916
	4333308	40S ribosomal protein S3-1, putative, expressed (228 aa)				•	•	•	•		0.915
	4331742	40S ribosomal protein S28, putative, expressed (65 aa)			•	•	•	•	•		0.915
	4343869	40S ribosomal protein S3-1, putative, expressed (233 aa)				•	•	•	•		0.906

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	84
PTZ00148	205	PTZ00148, PTZ00148, 40S ribosomal protein S8; Prov	4e-35
cd11380	138	cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal r	2e-09
cd11382	122	cd11382, Ribosomal_S8e, Eukaryotic/archaeal riboso	2e-07
pfam01201	129	pfam01201, Ribosomal_S8e, Ribosomal protein S8e	1e-04

>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional

 Score =  117 bits (296), Expect = 4e-35
 Identities = 45/75 (60%), Positives = 57/75 (76%)

Query: 3   DAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILE 62
           +    +  KKS  ++ KLE R+K+  +D  + EQF SGRLLA I+SRPGQ GRADGYILE
Sbjct: 130 EEENKKAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYILE 189

Query: 63  GKELEFYMKKLQRKK 77
           GKELEFY+KKL++KK
Sbjct: 190 GKELEFYLKKLEKKK 204

Length = 205

>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein S8e and similar proteins

 Score = 50.2 bits (121), Expect = 2e-09
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 34  EEQFGSGRLLACIASRPGQCGRADGYIL 61
           EE        A + SRPGQ G  +  +L
Sbjct: 111 EEGKVVWGGYAQVTSRPGQDGCVNAVLL 138

This family contains the eukaryotic/archaeal ribosomal protein S8, a component of the small ribosomal subunits, as well as the NSA2 gene product. Length = 138

>gnl|CDD|211394 cd11382, Ribosomal_S8e, Eukaryotic/archaeal ribosomal protein S8e (RPS8)

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 41  RLLACIASRPGQCGRADGYIL 61
           R LA + SRPGQ G  +G +L
Sbjct: 102 RGLARVTSRPGQDGVVNGVLL 122

The eukaryotic/archaeal ribosomal protein S8 is a component of the small (40S in eukaryotes, 30S in archaea) ribosomal subunits and interacts tightly with 18S rRNA (16S rRNA in archaea, presumably). Length = 122

>gnl|CDD|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 44  ACIASRPGQCGRADGYIL 61
           A + SRPGQ GR +G +L
Sbjct: 112 ARVTSRPGQDGRVNGVLL 129

Length = 129

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
PTZ00148	205	40S ribosomal protein S8; Provisional	100.0
KOG3283	200	consensus 40S ribosomal protein S8 [Translation, r	100.0
PF01201	132	Ribosomal_S8e: Ribosomal protein S8e; InterPro: IP	98.37
COG2007	127	RPS8A Ribosomal protein S8E [Translation, ribosoma	97.99
TIGR00307	127	S8e ribosomal protein S8.e. Archaeal and eukaryoti	97.92
PRK04049	127	30S ribosomal protein S8e; Validated	97.41
PTZ00388	223	40S ribosomal protein S8-like; Provisional	95.92

>PTZ00148 40S ribosomal protein S8; Provisional

Probab=100.00  E-value=1.8e-37  Score=233.01  Aligned_cols=74  Identities=61%  Similarity=0.924  Sum_probs=70.3

Q ss_pred             hhhhhhhhchHHHHHHHHHhccCCCChHHHHHhhcCceeEEEeccCCcccccceeeeccchHHHHHHHHHhhhc
Q 037330            5 PATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKG   78 (84)
Q Consensus         5 ~~~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILEGkELeFY~kki~~kK~   78 (84)
                      ++.+++++|+++++||+.|+++++||++|+|||.+||||||||||||||||||||||||+||+||+++|++||+
T Consensus       132 ~~~~~~k~s~~~~kk~~~r~~~~~~~~~leeqf~~GrllA~IsSRPGQ~Gr~dGyILEGkEL~FY~kk~~~kK~  205 (205)
T PTZ00148        132 ENKKAKKKSESLVAKLEVRKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYILEGKELEFYLKKLEKKKK  205 (205)
T ss_pred             hhhhhhhhhHHHHHHHHHhhhhccccHHHHHHHhhCeEEEEEeCCCCCccceeEEEEecHHHHHHHHHHHhccC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999873

>KOG3283 consensus 40S ribosomal protein S8 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.7e-37  Score=229.98  Aligned_cols=73  Identities=66%  Similarity=1.101  Sum_probs=70.3

Q ss_pred             hhhhhhchHHHHHHHHHhccCCCChHHHHHhhcCceeEEEeccCCcccccceeeeccchHHHHHHHHHhhhcc
Q 037330            7 TEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK   79 (84)
Q Consensus         7 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILEGkELeFY~kki~~kK~k   79 (84)
                      .+++++|+++++||++|+++++||++|+|||++|||||||+|||||||+||||||||+||+||+++|++||.|
T Consensus       128 ~~~~k~sk~~~rk~~~r~~~a~vds~l~eqF~~GrL~A~isSrpGQ~GradgyileGkEl~FYlrki~~kk~k  200 (200)
T KOG3283|consen  128 ILNKKKSKHVQRKYAERQKNAKVDSSLEEQFAAGRLYACISSRPGQCGRADGYILEGKELEFYLRKIKAKKGK  200 (200)
T ss_pred             cccchhhHHHHHHHHHhhccccccHHHHHHHhcCcEEEEEeCCCCcccccceeeeccchhHHHHHHhhhhcCC
Confidence            5678899999999999999999999999999999999999999999999999999999999999999999854

>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []

Probab=98.37  E-value=6.5e-08  Score=68.62  Aligned_cols=19  Identities=42%  Similarity=0.660  Sum_probs=18.6

Q ss_pred             eEEEeccCCcccccceeee
Q 037330           43 LACIASRPGQCGRADGYIL   61 (84)
Q Consensus        43 lA~IsSRPGQ~GraDGyIL   61 (84)
                      ||+|+|||||+|.+|||||
T Consensus       114 ~A~vtSRPGQdG~vnavLl  132 (132)
T PF01201_consen  114 YARVTSRPGQDGVVNAVLL  132 (132)
T ss_dssp             EEEEESEHHHHSCEEEEEE
T ss_pred             eEEEEeCCCCcceeeEEEC
Confidence            9999999999999999997

One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.

>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=3.1e-06  Score=60.59  Aligned_cols=36  Identities=36%  Similarity=0.644  Sum_probs=27.5

Q ss_pred             HHHHHh---ccCCCChHHHHHhhcCceeEEEeccCCcccccceeeec
Q 037330           19 KLEKRQ---KDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILE   62 (84)
Q Consensus        19 K~~~R~---k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILE   62 (84)
                      -|..|.   |.+.|+..+      |  ||+|+|||||.|.+++++|+
T Consensus        89 ~y~rrniitKGaiI~t~~------G--~A~VTsRPgQdG~vNavLl~  127 (127)
T COG2007          89 EYVRRNIITKGAIIETEI------G--YAVVTSRPGQDGVVNAVLLE  127 (127)
T ss_pred             HHhhccceecceEEEEee------e--EEEEecCCCccceeEEEEeC
Confidence            355552   445555443      7  99999999999999999996

>TIGR00307 S8e ribosomal protein S8

Probab=97.92  E-value=5.4e-06  Score=59.05  Aligned_cols=21  Identities=43%  Similarity=0.719  Sum_probs=19.9

Q ss_pred             eEEEeccCCcccccceeeecc
Q 037330           43 LACIASRPGQCGRADGYILEG   63 (84)
Q Consensus        43 lA~IsSRPGQ~GraDGyILEG   63 (84)
                      +|+|+|||||.|.++|++||+
T Consensus       107 ~A~VTsrPgQdG~vNavll~~  127 (127)
T TIGR00307       107 YARVTSRPGQDGVVNGVLIEE  127 (127)
T ss_pred             EEEEecCCCcCceEeEEEecC
Confidence            599999999999999999985

e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.

>PRK04049 30S ribosomal protein S8e; Validated

Probab=97.41  E-value=8.4e-05  Score=53.03  Aligned_cols=20  Identities=40%  Similarity=0.644  Sum_probs=18.9

Q ss_pred             EEEeccCCcccccceeeecc
Q 037330           44 ACIASRPGQCGRADGYILEG   63 (84)
Q Consensus        44 A~IsSRPGQ~GraDGyILEG   63 (84)
                      |.|+|||||.|-.+|++||.
T Consensus       108 A~VTSRPGQdG~vNavLi~~  127 (127)
T PRK04049        108 AKVTSRPGQDGVVNAVLIEE  127 (127)
T ss_pred             EEEecCCCcCceEEEEEecC
Confidence            99999999999999999983

>PTZ00388 40S ribosomal protein S8-like; Provisional

Probab=95.92  E-value=0.0044  Score=48.03  Aligned_cols=19  Identities=21%  Similarity=0.373  Sum_probs=18.1

Q ss_pred             eEEEeccCCcccccceeee
Q 037330           43 LACIASRPGQCGRADGYIL   61 (84)
Q Consensus        43 lA~IsSRPGQ~GraDGyIL   61 (84)
                      ||.|+|||||.|-.+|++|
T Consensus       204 yAqVTsrPgQDG~VNAVLL  222 (223)
T PTZ00388        204 YAQVTNNPENDGCINAVLL  222 (223)
T ss_pred             eEEEecCCCcCceeeEEEe
Confidence            6999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
2xzm_2	208	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-19
3u5c_I	200	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-15
3zey_5	220	High-resolution Cryo-electron Microscopy Structure		1e-13

>pdb|2XZM|2 Chain 2, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 208

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 12  KSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMK 71
           KS HV +++ KR K + L+ +IEEQF S R+LACI SRPGQ GRADGYILEGKELEFY++
Sbjct: 143 KSRHVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIR 201
Query: 72  KLQRKK 77
           KLQ KK
Sbjct: 202 KLQSKK 207

>pdb|3U5C|I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 200

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 46/70 (65%)
Query: 8   EEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELE 67
           E   KS +  RK   R     ++  +E QF +GRL ACI+SRPGQ GR DGYILEG+EL 
Sbjct: 131 ETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELA 190
Query: 68  FYMKKLQRKK 77
           FY+++L  KK
Sbjct: 191 FYLRRLTAKK 200

>pdb|3ZEY|5 Chain 5, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 220

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 47/67 (70%)
Query: 11  KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYM 70
           K SS + RK E R+K   ++  + +Q   GRLLA I SRPGQ GRADG +LEG EL+FY+
Sbjct: 153 KASSKLKRKWEYRRKHHKIEKALADQLREGRLLARITSRPGQTGRADGALLEGAELQFYL 212
Query: 71  KKLQRKK 77
           KKL +KK
Sbjct: 213 KKLDKKK 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	2e-26
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	3e-26

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I Length = 200

 Score = 94.8 bits (235), Expect = 2e-26
 Identities = 36/77 (46%), Positives = 48/77 (62%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
           + +    E   KS +  RK   R     ++  +E QF +GRL ACI+SRPGQ GR DGYI
Sbjct: 124 KKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYI 183

Query: 61  LEGKELEFYMKKLQRKK 77
           LEG+EL FY+++L  KK
Sbjct: 184 LEGEELAFYLRRLTAKK 200

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2 Length = 208

 Score = 94.8 bits (235), Expect = 3e-26
 Identities = 44/77 (57%), Positives = 53/77 (68%)

Query: 1   EGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYI 60
                     K+ S  ++K  KR K + L+ +IEEQF S R+LACI SRPGQ GRADGYI
Sbjct: 131 LKKDRTVLGNKEKSRHVQKRVKRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYI 190

Query: 61  LEGKELEFYMKKLQRKK 77
           LEGKELEFY++KLQ KK
Sbjct: 191 LEGKELEFYIRKLQSKK 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3u5c_I	200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	100.0
2xzm_2	208	40S ribosomal protein S8; ribosome, translation; 3	100.0
2kcp_A	98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	99.29
2kco_A	133	30S ribosomal protein S8E; ribosomal protein of un	99.23
3j20_J	127	30S ribosomal protein S8E; archaea, archaeal, KINK	96.96

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I

Probab=100.00  E-value=9.1e-39  Score=238.06  Aligned_cols=71  Identities=51%  Similarity=0.895  Sum_probs=63.9

Q ss_pred             hhhhhhchHHHHHHHHHhccCCCChHHHHHhhcCceeEEEeccCCcccccceeeeccchHHHHHHHHHhhh
Q 037330            7 TEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK   77 (84)
Q Consensus         7 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILEGkELeFY~kki~~kK   77 (84)
                      ++++++|+++++||++|+++++||++|+|||++||||||||||||||||||||||||+||+||++||++||
T Consensus       130 ~~~~k~s~~~~~k~~~r~~~~~i~~~leeqf~~GrllA~isSRPGQ~GradGyiLEGkELeFy~kk~~~kk  200 (200)
T 3u5c_I          130 EETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK  200 (200)
T ss_dssp             ------CSHHHHHHHHSCSSCCCCHHHHHHHHTTCCEEEECSCHHHHSCCCEEECCHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhHHHHHHHHHHHhhCCcCHHHHHHHhhCcEEEEEecCCCCccccceeEEccHHHHHHHHHHhccC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999875

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2

Probab=100.00  E-value=3.2e-38  Score=236.44  Aligned_cols=70  Identities=64%  Similarity=1.019  Sum_probs=67.6

Q ss_pred             hhhhhhchHHHHHHHHHhccCCCChHHHHHhhcCceeEEEeccCCcccccceeeeccchHHHHHHHHHhhh
Q 037330            7 TEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKK   77 (84)
Q Consensus         7 ~~~kk~Sk~~~kK~~~R~k~~kv~~~L~eqf~~GrllA~IsSRPGQ~GraDGyILEGkELeFY~kki~~kK   77 (84)
                      .+++++|+++++|| +|++++++||+|+|||++||||||||||||||||||||||||+||+||+++|++||
T Consensus       138 ~~~~k~s~~~~kk~-~r~~~~~~~~~l~eqf~~GrllA~isSRPGQ~GradGyiLEGkELeFY~~k~~~kk  207 (208)
T 2xzm_2          138 LGNKEKSRHVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKK  207 (208)
T ss_dssp             CCSCCSSTTHHHHH-HHTTTCCCCHHHHHHHHHSEEEEEECSCHHHHSCCEEEECCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHH-HHhhhccccHHHHHHHhhCcEEEEEecCCCCcccccEEEEechhHHHHHHHHHhcc
Confidence            45789999999999 99999999999999999999999999999999999999999999999999999987

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A

Probab=99.29  E-value=5.3e-13  Score=90.49  Aligned_cols=28  Identities=32%  Similarity=0.495  Sum_probs=25.5

Q ss_pred             hhcCceeEEEeccCCcccccceeeeccchH
Q 037330           37 FGSGRLLACIASRPGQCGRADGYILEGKEL   66 (84)
Q Consensus        37 f~~GrllA~IsSRPGQ~GraDGyILEGkEL   66 (84)
                      ...|+  |||+|||||+|++|||||||+|-
T Consensus        66 ~d~Gk--A~VTSRPGQdG~vnavlL~g~e~   93 (98)
T 2kcp_A           66 TNLGN--VRVTSRPGQDGVINGVLIRELEH   93 (98)
T ss_dssp             ESSSE--EEECSCTTGGGSCEEEEECCSCC
T ss_pred             ecCcE--EEEecCCCCccEEEEEEEecccc
Confidence            34798  99999999999999999999984

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}

Probab=99.23  E-value=1.3e-12  Score=92.42  Aligned_cols=25  Identities=36%  Similarity=0.597  Sum_probs=24.3

Q ss_pred             eEEEeccCCcccccceeeeccchHH
Q 037330           43 LACIASRPGQCGRADGYILEGKELE   67 (84)
Q Consensus        43 lA~IsSRPGQ~GraDGyILEGkELe   67 (84)
                      ||||+|||||+|++|||||||+||+
T Consensus       108 ~A~VtSRPGQdG~vnavlleg~el~  132 (133)
T 2kco_A          108 LAVVTSRPGQDGVINAVLLKNESQR  132 (133)
T ss_dssp             EEEEEEEECTTSBEEEEECSSCCCC
T ss_pred             eEEEecCCCCcceEEEEEEeccccc
Confidence            7999999999999999999999996

>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=96.96  E-value=0.0003  Score=49.01  Aligned_cols=24  Identities=42%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             hhcCceeEEEeccCCcccccceeeec
Q 037330           37 FGSGRLLACIASRPGQCGRADGYILE   62 (84)
Q Consensus        37 f~~GrllA~IsSRPGQ~GraDGyILE   62 (84)
                      ..-|+  |+|+|||||.|..++++||
T Consensus       103 te~G~--a~vtsrPgqdG~vNavll~  126 (127)
T 3j20_J          103 TEIGK--AKVTSRPGQDGVVNAILLE  126 (127)
T ss_dssp             BSSSE--EEECSCSSSSCCCCEEECC
T ss_pred             EcCce--EEEecCCccCceEEEEEec
Confidence            44564  9999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00