Citrus Sinensis ID: 037339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MSTYRATARILRSLMWQAAGANYSSSSLTSGRHLMSRYPAGIVRYWSSASSSSSSSSSSSSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELKDAPAPVGYH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccHHcccccccHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccccccccEcccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHEEEEHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MSTYRATARILRSLMWQAaganyssssltsgrhlmsryPAGIVRYwssassssssssssssappvdlpkdkeeinqQNIVSYwgiiptkvtkedgsawrwncfrhhkpenyrdkFAYWTVQAlkfpthlffqRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDlengsfenapapaiaidywrmppdstlrDVVVDIQcqghelkdapapvgyh
Flexible Loop (DISEMBL)
MSTYRATARILRSLMWQAAGAnyssssltsgrHLMSRYPAGIVRYWSSASsssssssssssappvDLPKDKEEINQQnivsywgiiptkvTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGhelkdapapvgyh
Low Complexity Region (SEG)
MSTYRATARILRSLMWQAAGANYSSSSLTSGRHLMSRYPAGIVRYWssassssssssssssaPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELKDAPAPVGYH
Disordered region (IsUnstruct)
*******ARILRSLMWQAAGANY*********HLMSRYPAGIVRYW******************************QNIVSYWGIIPTKVTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK****************************************************
Disordered Region (DISOPRED)
***********************************************************************************GIIPTKVTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELKDA*A*****
Disordered Region (DISEMBL)
********RILRSLMWQAAGANYSSSSLTSGRHLMSRYPAGIVRYW*********************PKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELKD********
Disordered Region (DISPRO)
********RILRSLMWQAAGANYSSSSLTSGRHLMSRYPAGIVRYW*****************************QQNIVSYWGIIPTKVTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELKDAPAPV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTYRATARILRSLMWQAAGANYSSSSLTSGRHLMSRYPAGIVRYWSSASSSSSSSSSSSSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELKDAPAPVGYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q8LEE7	318	Ubiquinol oxidase 3, mito	yes	no	0.949	0.886	0.609	1e-109
Q40578	297	Ubiquinol oxidase 2, mito	N/A	no	0.747	0.747	0.669	1e-100
Q41224	353	Ubiquinol oxidase 1, mito	N/A	no	0.747	0.628	0.653	9e-99
O23913	325	Ubiquinol oxidase 1b, mit	no	no	0.865	0.790	0.594	1e-98
Q39219	354	Ubiquinol oxidase 1a, mit	no	no	0.750	0.629	0.650	3e-98
Q07185	321	Ubiquinol oxidase 1, mito	yes	no	0.956	0.884	0.532	1e-94
O22048	329	Ubiquinol oxidase 1c, mit	no	no	0.767	0.693	0.619	1e-94
Q40294	318	Ubiquinol oxidase, mitoch	N/A	no	0.808	0.754	0.584	3e-92
P22185	349	Ubiquinol oxidase 1, mito	N/A	no	0.915	0.779	0.539	2e-90
Q41266	333	Ubiquinol oxidase 2, mito	no	no	0.730	0.651	0.618	1e-88

>sp|Q8LEE7|AOX3_ARATH Ubiquinol oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=AOX3 PE=2 SV=2

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/330 (60%), Positives = 234/330 (70%), Gaps = 48/330 (14%)

Query: 3   TYRATARILRSLMWQAAGANYSSSSLTSGR---HLMSRYPAGIVRYWSSASSSSSSSSSS 59
           +YR+  R LR ++     ++  SS L  G    HL+S  P   VR  SS +SS  S ++ 
Sbjct: 2   SYRSIYRTLRPVL----SSSVQSSGLGIGGFRGHLISHLPN--VRLLSSDTSSPVSGNNQ 55

Query: 60  SSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF---------------R 104
              P           + + I +YWGI PTK+TK DGSAW+WNCF               +
Sbjct: 56  PENP-------IRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTK 108

Query: 105 HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRK 164
           HHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLL+TVAAVPGMVGGMLLH KSLR+
Sbjct: 109 HHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRR 168

Query: 165 FEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKL 224
           FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQGVFFNAYFLAY+ SPKL
Sbjct: 169 FEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKL 228

Query: 225 AHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV------ 278
           AHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIAIDYWR+P D+TLRDVV       
Sbjct: 229 AHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADE 288

Query: 279 -----------DIQCQGHELKDAPAPVGYH 297
                      DIQ +GHELK+APAP+GYH
Sbjct: 289 AHHRDINHYASDIQFKGHELKEAPAPIGYH 318

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 201/254 (79%), Gaps = 32/254 (12%)

Query: 76  QQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWTV 120
           ++++VSYWG+ P+KVTKEDG+ W+WNCFR               HH P  + DKFAYWTV
Sbjct: 44  EKSVVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTV 103

Query: 121 QALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAE 180
           +AL++PT +FFQRR+ C AM+L+TVAAVPGMVGGMLLHCKSLR+FE SGGWIKALLEEAE
Sbjct: 104 KALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAE 163

Query: 181 NERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSY 240
           NERMHLMTF+E+A+P WYERALVFAVQGVF NAYF+ YL SPKLAHRIVGYLEEEA++SY
Sbjct: 164 NERMHLMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSY 223

Query: 241 TEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV-----------------DIQCQ 283
           TEFLK+L+ G+ EN PAPAIAIDYWR+P DSTLRDVV+                 DI  Q
Sbjct: 224 TEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQ 283

Query: 284 GHELKDAPAPVGYH 297
           G +LKD+PAP+GYH
Sbjct: 284 GQQLKDSPAPIGYH 297

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41224|AOX1_TOBAC Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1

 Score =  360 bits (923), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 166/254 (65%), Positives = 199/254 (78%), Gaps = 32/254 (12%)

Query: 76  QQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWTV 120
           ++++VSYWG+ P+KVTKEDG+ W+WNCFR               HH P  + DKFAYWTV
Sbjct: 100 EKSVVSYWGVQPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTV 159

Query: 121 QALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAE 180
           ++L++PT +FFQRR+ C AM+L+TVAAVPGMVGGMLLHCKSLR+FE SGGWIK LL+EAE
Sbjct: 160 KSLRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAE 219

Query: 181 NERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSY 240
           NERMHLMTF+E+A+P WYERALVFAVQGVFFNAYF+ YL SPKLAHRIVGYLEEEA++SY
Sbjct: 220 NERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSY 279

Query: 241 TEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV-----------------DIQCQ 283
           TEFLK+L+ G+ EN PAPAIAIDY R+P DSTL DVV+                 DI  Q
Sbjct: 280 TEFLKELDKGNIENVPAPAIAIDYCRLPKDSTLLDVVLVVRADEAHHRDVNHFASDIHYQ 339

Query: 284 GHELKDAPAPVGYH 297
           G +LKD+PAP+GYH
Sbjct: 340 GQQLKDSPAPIGYH 353

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O23913|AOX1B_ARATH Ubiquinol oxidase 1b, mitochondrial OS=Arabidopsis thaliana GN=AOX1B PE=1 SV=1

 Score =  360 bits (923), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/296 (59%), Positives = 212/296 (71%), Gaps = 39/296 (13%)

Query: 37  RYPA-GIVRYWSSAS--SSSSSSSSSSSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKE 93
           R PA G+VR +S  +     ++    SS    D     E++    IVSYWG+ P K+TKE
Sbjct: 34  RVPAMGVVRVFSKMTFEKKKTTEEKGSSGGKADQGNKGEQL----IVSYWGVKPMKITKE 89

Query: 94  DGSAWRWNCFR---------------HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCH 138
           DG+ W+W+CFR               HH P    DK AYWTV++L++PT LFFQRR+ C 
Sbjct: 90  DGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFFQRRYGCR 149

Query: 139 AMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWY 198
           AM+L+TVAAVPGMVGGML+HCKSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+P WY
Sbjct: 150 AMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWY 209

Query: 199 ERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAP 258
           ERALV AVQG+FFNAYFL YL SPK AHR+VGYLEEEA++SYTEFLK+L+NG+ EN PAP
Sbjct: 210 ERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAP 269

Query: 259 AIAIDYWRMPPDSTLRDVVV-----------------DIQCQGHELKDAPAPVGYH 297
           AIAIDYWR+  D+TLRDVV+                 DI  QG ELK+APAP+GYH
Sbjct: 270 AIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGRELKEAPAPIGYH 325

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2

 Score =  358 bits (918), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 166/255 (65%), Positives = 195/255 (76%), Gaps = 32/255 (12%)

Query: 75  NQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWT 119
             + I SYWG+ P K+TKEDGS W+WNCFR               HH P  + D+ AYWT
Sbjct: 100 GDKGIASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWT 159

Query: 120 VQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEA 179
           V++L++PT LFFQRR+ C AM+L+TVAAVPGMVGGMLLHCKSLR+FE SGGWIKALLEEA
Sbjct: 160 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEA 219

Query: 180 ENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNS 239
           ENERMHLMTF+E+A+P+WYERALV  VQGVFFNAYFL YL SPK AHR+VGYLEEEA++S
Sbjct: 220 ENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 279

Query: 240 YTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV-----------------DIQC 282
           YTEFLK+L+ G+ EN PAPAIAIDYWR+P D+TLRDVV+                 DI  
Sbjct: 280 YTEFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHY 339

Query: 283 QGHELKDAPAPVGYH 297
           QG ELK+APAP+GYH
Sbjct: 340 QGRELKEAPAPIGYH 354

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q07185|AOX1_SOYBN Ubiquinol oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1

 Score =  346 bits (888), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/319 (53%), Positives = 213/319 (66%), Gaps = 35/319 (10%)

Query: 14  LMWQAAGANYSSSSLTSGRHLMSRYPAGIVRYWSSASSSSSS---SSSSSSAPPVDLPKD 70
           +M   +GAN  +++       +S    G+   +     S S+   S        V L   
Sbjct: 3   MMMSRSGANRVANTAMFVAKGLSGEVGGLRALYGGGVRSESTLALSEKEKIEKKVGLSSA 62

Query: 71  KEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF---------------RHHKPENYRDKF 115
                ++ IVSYWGI P+K+TK+DG+ W+WNCF               +H  P  + DK 
Sbjct: 63  GGNKEEKVIVSYWGIQPSKITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKM 122

Query: 116 AYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKAL 175
           A+WTV+ L++PT +FFQRR+ C AM+L+TVAAVPGMV GMLLHCKSLR+FEHSGGW KAL
Sbjct: 123 AFWTVKVLRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKAL 182

Query: 176 LEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEE 235
           LEEAENERMHLMTF+E+A+P+WYERALV  VQGVFFNAYFL YL SPK AHR+ GYLEEE
Sbjct: 183 LEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEE 242

Query: 236 AVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV----------------- 278
           A++SYTEFLK+L+ G+ EN PAPAIAIDYW++PP STLRDVV+                 
Sbjct: 243 AIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFAS 302

Query: 279 DIQCQGHELKDAPAPVGYH 297
           DI  QG EL++A AP+GYH
Sbjct: 303 DIHYQGRELREAAAPIGYH 321

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22048|AOX1C_ARATH Ubiquinol oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1

 Score =  346 bits (887), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/260 (61%), Positives = 197/260 (75%), Gaps = 32/260 (12%)

Query: 70  DKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDK 114
           D+    +Q IVSYWG+ P K+TKEDG+ W+W+CFR               HH P    DK
Sbjct: 70  DQGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDK 129

Query: 115 FAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKA 174
            AYW V++L++PT LFFQRR+ C A++L+TVAAVPGMVGGML+H KSLR+FE SGGWIKA
Sbjct: 130 IAYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKA 189

Query: 175 LLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEE 234
           LLEEAENERMHLMTF+E+A+P+WYERALV +VQGVFFNAY + Y+ SPK AHR+VGYLEE
Sbjct: 190 LLEEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEE 249

Query: 235 EAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV---------------- 278
           EA++SYTEFLK+L+NG+ EN PAPAIA+DYWR+  D+TLRDVV+                
Sbjct: 250 EAIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYA 309

Query: 279 -DIQCQGHELKDAPAPVGYH 297
            DI  QGHELK+APAP+GYH
Sbjct: 310 SDIHYQGHELKEAPAPIGYH 329

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40294|AOX1_MANIN Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2

 Score =  338 bits (866), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 159/272 (58%), Positives = 196/272 (72%), Gaps = 32/272 (11%)

Query: 58  SSSSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF-------------- 103
           S++      + + KEE     + +YWGI   K+T+EDGS W WNCF              
Sbjct: 47  SNAGGAEAQVKEQKEEKKDAMVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDL 106

Query: 104 -RHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSL 162
            +HH P  + DKFAY TV+ L+ PT +FFQRR+ C AM+L+TVAAVPGMVGGMLLH KSL
Sbjct: 107 KKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSL 166

Query: 163 RKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASP 222
           RK E SGGWIKALLEEAENERMHLMT +EL +P+WYER LV AVQGVFFN++F+ Y+ SP
Sbjct: 167 RKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSP 226

Query: 223 KLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV---- 278
           KLAHRIVGYLEEEA++SYTE+LKD+++G+ +N PAPAIAIDYWR+P D+TL+DV+     
Sbjct: 227 KLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRA 286

Query: 279 -------------DIQCQGHELKDAPAPVGYH 297
                        D+Q QG EL+DAPAPVGYH
Sbjct: 287 DEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 318

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Mangifera indica (taxid: 29780)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P22185|AOX1_TYPVN Ubiquinol oxidase 1, mitochondrial OS=Typhonium venosum GN=AOX1 PE=1 SV=1

 Score =  332 bits (851), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/319 (53%), Positives = 212/319 (66%), Gaps = 47/319 (14%)

Query: 24  SSSSLTSGRHLMSRYPAGIVRYWSSASSSSSSSSSSSSAPPVDLPKDKEE---------- 73
           ++SSL  G    +  PA     W  +  S    +S+ SAP  D  K+K            
Sbjct: 33  TASSLLHG--CSAAAPAQRAGLWPPSWFSPPRHASTLSAPAQDGGKEKAAGTAGKVPPGE 90

Query: 74  ---INQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKF 115
                ++ +VSYW + P+KV+KEDGS WRW CFR               HH P    DK 
Sbjct: 91  DGGAEKEAVVSYWAVPPSKVSKEDGSEWRWTCFRPWETYQADLSIDLHKHHVPTTILDKL 150

Query: 116 AYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKAL 175
           A  TV+AL++PT +FFQRR+ C AM+L+TVAAVPGMVGG+LLH KSLR+FEHSGGWI+AL
Sbjct: 151 ALRTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFEHSGGWIRAL 210

Query: 176 LEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEE 235
           LEEAENERMHLMTF+E+A+P+WYERALV AVQGVFFNAYFL YL SPK AHR+VGYLEEE
Sbjct: 211 LEEAENERMHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEE 270

Query: 236 AVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV----------------- 278
           A++SYTEFLKD+++G+ ++ PAPAIA+DYWR+P  STLRDVV                  
Sbjct: 271 AIHSYTEFLKDIDSGAIQDCPAPAIALDYWRLPQGSTLRDVVTVVRADEAHHRDVNHFAS 330

Query: 279 DIQCQGHELKDAPAPVGYH 297
           D+  Q  ELK  PAP+GYH
Sbjct: 331 DVHYQDLELKTTPAPLGYH 349

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures. In S.guttatum the alternative respiratory pathway is thermogenic.

Typhonium venosum (taxid: 4463)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41266|AOX2_SOYBN Ubiquinol oxidase 2, mitochondrial OS=Glycine max GN=AOX2 PE=1 SV=2

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/249 (61%), Positives = 185/249 (74%), Gaps = 32/249 (12%)

Query: 81  SYWGIIPTKVTKEDGSAWRWNCF---------------RHHKPENYRDKFAYWTVQALKF 125
           SYWGI   KV +EDG+ W WNCF               +HH P+N  DK AY TV+ L+ 
Sbjct: 85  SYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRI 144

Query: 126 PTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMH 185
           PT LFF+RR+ C AM+L+TVAAVPGMVGGMLLH +SLRKF+ SGGWIKALLEEAENERMH
Sbjct: 145 PTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMH 204

Query: 186 LMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK 245
           LMT +EL +P+WYER LV AVQGVFFNA+F+ Y+ SPK+AHRIVGYLEEEA++SYTE+LK
Sbjct: 205 LMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 264

Query: 246 DLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV-----------------DIQCQGHELK 288
           DLE+G+ EN PAPAIAIDYWR+P D+ L+DV+                  DI  QG EL+
Sbjct: 265 DLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 324

Query: 289 DAPAPVGYH 297
           +APAP+GYH
Sbjct: 325 EAPAPIGYH 333

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
147782375	285	hypothetical protein VITISV_001908 [Viti	0.835	0.870	0.676	1e-108
225427480	322	PREDICTED: alternative oxidase 3, mitoch	0.828	0.763	0.681	1e-108
224074535	253	predicted protein [Populus trichocarpa]	0.737	0.865	0.745	1e-108
6967043	294	alternative oxidase [Populus tremula x P	0.801	0.809	0.690	1e-107
350539127	318	alternative oxidase 1b [Solanum lycopers	0.848	0.792	0.650	1e-107
18398395	318	alternative oxidase 3 [Arabidopsis thali	0.949	0.886	0.609	1e-107
21553592	318	oxidase, putative [Arabidopsis thaliana]	0.949	0.886	0.606	1e-106
297851678	315	At1g32350/F5D14.4 [Arabidopsis lyrata su	0.925	0.873	0.606	1e-105
18176467	317	At1g32350/F5D14.4 [Arabidopsis thaliana]	0.946	0.886	0.603	1e-104
155573899	353	mitochondrial alternative oxidase AOX1a	0.750	0.631	0.670	1e-100

>gi|147782375|emb|CAN70584.1| hypothetical protein VITISV_001908 [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/281 (67%), Positives = 214/281 (76%), Gaps = 33/281 (11%)

Query: 50  SSSSSSSSSSSSAPPVDLPKDKEEINQQN-IVSYWGIIPTKVTKEDGSAWRWNCFR---- 104
             S+ +S  +    P+ +PK   E  +Q  IVSYWG+ P  +TKEDGS W+W+CFR    
Sbjct: 5   EQSTLASGDAKEEKPIQVPKTGSENGEQKAIVSYWGVPPANLTKEDGSPWKWHCFRPWET 64

Query: 105 -----------HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVG 153
                      HHKP  + DKFAYWTVQALK PTH+FFQR+HMCHAMLL+TVAAVPGMVG
Sbjct: 65  YKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVG 124

Query: 154 GMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNA 213
           GMLLHC+S R+FE SGGWIKALLEEAENERMHLMTFIELA+PQWYERAJVFAVQGVFFNA
Sbjct: 125 GMLLHCQSXRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAJVFAVQGVFFNA 184

Query: 214 YFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTL 273
           YFL YLASPK+AHRI GYLEEEAV SYTEFLKDL+NGSFEN PAPAIAIDYWR+P +STL
Sbjct: 185 YFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPAESTL 244

Query: 274 RDVV-----------------VDIQCQGHELKDAPAPVGYH 297
           RDVV                  DIQCQGH+ KD PAP+GYH
Sbjct: 245 RDVVEVIRADEAHHRDVNHYASDIQCQGHQFKDVPAPLGYH 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427480|ref|XP_002262982.1| PREDICTED: alternative oxidase 3, mitochondrial [Vitis vinifera] gi|296088482|emb|CBI37473.3| unnamed protein product [Vitis vinifera]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/279 (68%), Positives = 214/279 (76%), Gaps = 33/279 (11%)

Query: 52  SSSSSSSSSSAPPVDLPKDKEEINQQN-IVSYWGIIPTKVTKEDGSAWRWNCFR------ 104
           S+ +S  +    P+ +PK   E  +Q  IVSYWG+ P  +TKEDGS W+W+CFR      
Sbjct: 44  STLASGDAKEEKPIQVPKTGSENGEQKAIVSYWGVPPANLTKEDGSPWKWHCFRPWETYK 103

Query: 105 ---------HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGM 155
                    HHKP  + DKFAYWTVQALK PTH+FFQR+HMCHAMLL+TVAAVPGMVGGM
Sbjct: 104 ADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVGGM 163

Query: 156 LLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYF 215
           LLHC+S R+FE SGGWIKALLEEAENERMHLMTFIELA+PQWYERA+VFAVQGVFFNAYF
Sbjct: 164 LLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAVQGVFFNAYF 223

Query: 216 LAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRD 275
           L YLASPK+AHRI GYLEEEAV SYTEFLKDL+NGSFEN PAPAIAIDYWR+P +STLRD
Sbjct: 224 LTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPAESTLRD 283

Query: 276 VV-----------------VDIQCQGHELKDAPAPVGYH 297
           VV                  DIQCQGH+ KD PAP+GYH
Sbjct: 284 VVEVIRADEAHHRDVNHYASDIQCQGHQFKDVPAPLGYH 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074535|ref|XP_002304386.1| predicted protein [Populus trichocarpa] gi|222841818|gb|EEE79365.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/251 (74%), Positives = 205/251 (81%), Gaps = 32/251 (12%)

Query: 79  IVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWTVQAL 123
           IVSYWG+ P K+TKEDG+AW+WNCFR               HHKP    DKFAYWTVQ L
Sbjct: 3   IVSYWGVTPPKITKEDGTAWKWNCFRPWESYKPDISIDVKKHHKPGTTMDKFAYWTVQVL 62

Query: 124 KFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENER 183
           K+PT+LFFQRRHMCHAMLL+TVAAVPGMVGGMLLHCKSLR+FE SGGWIKALLEEAENER
Sbjct: 63  KYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 122

Query: 184 MHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEF 243
           MHLMTF+E+A+PQWYERALVFAVQG FFNAYFLAYLASPKLAHRIVGYLEEEAVNSY+EF
Sbjct: 123 MHLMTFVEIAKPQWYERALVFAVQGAFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEF 182

Query: 244 LKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV-----------------DIQCQGHE 286
           L+DL+NG+FEN PAPAIAIDYWR+PP+STLRDVV                  DIQCQG E
Sbjct: 183 LEDLDNGNFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEAHHRDLNHYASDIQCQGQE 242

Query: 287 LKDAPAPVGYH 297
           LK  PAP+GYH
Sbjct: 243 LKHTPAPIGYH 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6967043|emb|CAB72441.1| alternative oxidase [Populus tremula x Populus tremuloides]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/281 (69%), Positives = 219/281 (77%), Gaps = 43/281 (15%)

Query: 59  SSSAPPVDLPKDKEEI----------NQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---- 104
           S+SAPPV +P ++E+           + + IVSYWG+ P K+TKEDG+AW+WNCFR    
Sbjct: 15  SASAPPV-IPGEEEKPKAAANSFTTEDGKAIVSYWGVSPPKITKEDGTAWKWNCFRPWES 73

Query: 105 -----------HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVG 153
                      HHKP    DKFAYWTVQ LK+PT+LFFQRRHMCHAMLL+TVAAVPGMVG
Sbjct: 74  YKPDISIDVKKHHKPGTTMDKFAYWTVQVLKYPTYLFFQRRHMCHAMLLETVAAVPGMVG 133

Query: 154 GMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNA 213
           GMLLH KSLR+FE SGGWIKALLEEAENERMHLMTF+E+A+PQWYERALVFAVQGVFFNA
Sbjct: 134 GMLLHFKSLRRFEQSGGWIKALLEEAENERMHLMTFVEIAKPQWYERALVFAVQGVFFNA 193

Query: 214 YFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTL 273
           YFLAYLASPKLAHRIVGYLEEEAVNSY+EFL+DL+N SFEN PAPAIAIDYWR+PP+STL
Sbjct: 194 YFLAYLASPKLAHRIVGYLEEEAVNSYSEFLEDLDNCSFENVPAPAIAIDYWRLPPNSTL 253

Query: 274 RDVVV-----------------DIQCQGHELKDAPAPVGYH 297
           RDVV                  DIQCQG EL+  PAP+GYH
Sbjct: 254 RDVVFVIRADEAHHRDLNHYASDIQCQGQELRYTPAPIGYH 294

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539127|ref|NP_001234120.1| alternative oxidase 1b [Solanum lycopersicum] gi|29465624|gb|AAK58483.1| alternative oxidase 1b [Solanum lycopersicum]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/292 (65%), Positives = 220/292 (75%), Gaps = 40/292 (13%)

Query: 43  VRYWSSASSSSSSSSSSSSAPPVDLPKDKEEINQ-----QNIVSYWGIIPTKVTKEDGSA 97
           +R+WS+ ++SS +     +    + P   +  N      + IVSYWG+ P K++KEDG+ 
Sbjct: 30  IRHWSNMNTSSKTKEEQKTH---NQPSHTDATNAAGDKAKKIVSYWGVDPPKISKEDGTP 86

Query: 98  WRWNCFR---------------HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLL 142
           W+WN FR               HH P N+ DKFAYWTVQ+LK+PT+LFFQRRHMCHAMLL
Sbjct: 87  WKWNSFRPWETYSADISIDVEKHHMPTNFMDKFAYWTVQSLKYPTYLFFQRRHMCHAMLL 146

Query: 143 QTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERAL 202
           +TVAAVPGMVGGMLLHCKSLR+FEHSGGWIKALLEEAENERMHLMTFIEL+ P+WYERAL
Sbjct: 147 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSNPKWYERAL 206

Query: 203 VFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAI 262
           VFAVQGVF NAYF+AYLASPKLAHRIVGYLEEEAVNSYTEFL D+E G FEN+PAPAIAI
Sbjct: 207 VFAVQGVFVNAYFIAYLASPKLAHRIVGYLEEEAVNSYTEFLIDIEKGLFENSPAPAIAI 266

Query: 263 DYWRMPPDSTLRDVVV-----------------DIQCQGHELKDAPAPVGYH 297
           DYWR+P D+TL+DVV                  DIQCQGHELK  PAP+GYH
Sbjct: 267 DYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQCQGHELKGYPAPIGYH 318

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398395|ref|NP_564395.1| alternative oxidase 3 [Arabidopsis thaliana] gi|85681032|sp|Q8LEE7.2|AOX3_ARATH RecName: Full=Ubiquinol oxidase 3, mitochondrial; AltName: Full=Alternative oxidase 3; Flags: Precursor gi|8920609|gb|AAF81331.1|AC007767_11 Strong similarity to alternative oxidase from Populus tremula x Populus tremuloides gb|AJ271889. It contains an alternative oxidase domain PF|01786 [Arabidopsis thaliana] gi|115311485|gb|ABI93923.1| At1g32350 [Arabidopsis thaliana] gi|332193346|gb|AEE31467.1| alternative oxidase 3 [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/330 (60%), Positives = 234/330 (70%), Gaps = 48/330 (14%)

Query: 3   TYRATARILRSLMWQAAGANYSSSSLTSGR---HLMSRYPAGIVRYWSSASSSSSSSSSS 59
           +YR+  R LR ++     ++  SS L  G    HL+S  P   VR  SS +SS  S ++ 
Sbjct: 2   SYRSIYRTLRPVL----SSSVQSSGLGIGGFRGHLISHLPN--VRLLSSDTSSPVSGNNQ 55

Query: 60  SSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF---------------R 104
              P           + + I +YWGI PTK+TK DGSAW+WNCF               +
Sbjct: 56  PENP-------IRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTK 108

Query: 105 HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRK 164
           HHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLL+TVAAVPGMVGGMLLH KSLR+
Sbjct: 109 HHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRR 168

Query: 165 FEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKL 224
           FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQGVFFNAYFLAY+ SPKL
Sbjct: 169 FEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKL 228

Query: 225 AHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV------ 278
           AHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIAIDYWR+P D+TLRDVV       
Sbjct: 229 AHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADE 288

Query: 279 -----------DIQCQGHELKDAPAPVGYH 297
                      DIQ +GHELK+APAP+GYH
Sbjct: 289 AHHRDINHYASDIQFKGHELKEAPAPIGYH 318

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553592|gb|AAM62685.1| oxidase, putative [Arabidopsis thaliana]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/330 (60%), Positives = 233/330 (70%), Gaps = 48/330 (14%)

Query: 3   TYRATARILRSLMWQAAGANYSSSSLTSGR---HLMSRYPAGIVRYWSSASSSSSSSSSS 59
           +YR+  R LR ++     ++  SS L  G    HL+S  P   VR  SS +SS  S ++ 
Sbjct: 2   SYRSIYRTLRPVL----SSSVQSSGLGIGGFRGHLISHLPN--VRLLSSDTSSPVSGNNQ 55

Query: 60  SSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF---------------R 104
              P           + + I +YWGI PTK+TK DGSAW+WNCF               +
Sbjct: 56  PENP-------IRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTK 108

Query: 105 HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRK 164
           HHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLL+TVAAVPGMVG MLLH KSLR+
Sbjct: 109 HHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGWMLLHLKSLRR 168

Query: 165 FEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKL 224
           FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQGVFFNAYFLAY+ SPKL
Sbjct: 169 FEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKL 228

Query: 225 AHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV------ 278
           AHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIAIDYWR+P D+TLRDVV       
Sbjct: 229 AHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADE 288

Query: 279 -----------DIQCQGHELKDAPAPVGYH 297
                      DIQ +GHELK+APAP+GYH
Sbjct: 289 AHHRDINHYASDIQFKGHELKEAPAPIGYH 318

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851678|ref|XP_002893720.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata] gi|297339562|gb|EFH69979.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 228/320 (71%), Gaps = 45/320 (14%)

Query: 14  LMWQAAGANYSSSSLTSG----RHLMSRYPAGIVRYWSSASSSSSSSSSSSSAPPVDLPK 69
           LM++      SSS L  G     H++S      VR+ SS +SS +S ++    P      
Sbjct: 5   LMYRTLRPVLSSSGLGVGPGIRGHVISHL--STVRFLSSDTSSPASGNNQPEKP------ 56

Query: 70  DKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF---------------RHHKPENYRDK 114
             +  + + + +YWGI P K+TK DGSAW+WNCF               +HHKP N+ DK
Sbjct: 57  -VQTADGKVMSTYWGIPPAKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDK 115

Query: 115 FAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKA 174
           FAYWTVQ LK P  LFFQR+HMCHAMLL+TVAAVPGMVGGMLLH KSLR+FEHSGGWIKA
Sbjct: 116 FAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKA 175

Query: 175 LLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEE 234
           LLEEAENERMHLMTFIEL++P+WYERA+VF VQG FFNAYFLAY+ SPKLAHRI GYLEE
Sbjct: 176 LLEEAENERMHLMTFIELSQPKWYERAIVFTVQGAFFNAYFLAYVISPKLAHRITGYLEE 235

Query: 235 EAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV---------------- 278
           EAVNSYTEFLKD++ G FEN+PAPAIAIDYWR+P D+TLRDVV                 
Sbjct: 236 EAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYA 295

Query: 279 -DIQCQGHELKDAPAPVGYH 297
            DIQ +GHELK+APAP+GYH
Sbjct: 296 SDIQFKGHELKEAPAPIGYH 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18176467|gb|AAL60049.1| At1g32350/F5D14.4 [Arabidopsis thaliana]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/330 (60%), Positives = 232/330 (70%), Gaps = 49/330 (14%)

Query: 3   TYRATARILRSLMWQAAGANYSSSSLTSGR---HLMSRYPAGIVRYWSSASSSSSSSSSS 59
           +YR+  R LR ++     ++  SS L  G    HL+S  P   VR  SS +SS  S ++ 
Sbjct: 2   SYRSIYRTLRPVL----SSSVQSSGLGIGGFRGHLISHLPN--VRLLSSDTSSPVSGNNQ 55

Query: 60  SSAPPVDLPKDKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF---------------R 104
              P           + + I +YWGI PTK+TK DGSAW+WNCF               +
Sbjct: 56  PENP-------IRTADGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTK 108

Query: 105 HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRK 164
           HHKP N+ DKFAYWTVQ LK P  LFFQR+HMCHAMLL+TVA VPGMVGGMLLH KSLR+
Sbjct: 109 HHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVA-VPGMVGGMLLHLKSLRR 167

Query: 165 FEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKL 224
           FEHSGGWIKALLEEAENERMHLMTFIEL++P+WYERA+VF VQGVFFNAYFLAY+ SPKL
Sbjct: 168 FEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKL 227

Query: 225 AHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV------ 278
           AHRI GYLEEEAVNSYTEFLKD++ G FEN+PAPAIA+DYWR P D+TLRDVV       
Sbjct: 228 AHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAMDYWRFPKDATLRDVVYVIRAEE 287

Query: 279 -----------DIQCQGHELKDAPAPVGYH 297
                      DIQ +GHELK+APAP+GYH
Sbjct: 288 APPRDINHYASDIQFKGHELKEAPAPIGYH 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|155573899|gb|ABU24346.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa] gi|155573901|gb|ABU24347.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/255 (67%), Positives = 203/255 (79%), Gaps = 32/255 (12%)

Query: 75  NQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWT 119
           +++++VSYWG+ P+KVTKEDG+ W+WNCFR               HH P  + DKFAYWT
Sbjct: 99  DEKSVVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWT 158

Query: 120 VQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEA 179
           V+AL++PT +FFQRR+ C AM+L+TVAAVPGMVGGMLLHCKSLR+FE SGGWIKALLEEA
Sbjct: 159 VKALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEA 218

Query: 180 ENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNS 239
           ENERMHLMTF+E+A+P WYERALVFAVQGVFFNAYF+ YL SPKLAHRIVGYLEEEA++S
Sbjct: 219 ENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHS 278

Query: 240 YTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV-----------------DIQC 282
           YTEFLK+L+ G+ EN PAPAIAIDYWR+P DSTLRDVV+                 DI  
Sbjct: 279 YTEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHY 338

Query: 283 QGHELKDAPAPVGYH 297
           QG +LKD+PAP+GYH
Sbjct: 339 QGQQLKDSPAPIGYH 353

Source: Nicotiana glutinosa

Species: Nicotiana glutinosa

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2028311	318	AOX1D "alternative oxidase 1D"	0.696	0.650	0.748	1.8e-97
TAIR|locus:2087807	354	AOX1A "alternative oxidase 1A"	0.703	0.590	0.68	4.4e-90
TAIR|locus:2087882	325	AOX1B "alternative oxidase 1B"	0.727	0.664	0.663	9e-90
TAIR|locus:2089124	329	AOX1C "alternative oxidase 1C"	0.727	0.656	0.633	3.1e-87
UNIPROTKB|Q07185	321	AOX1 "Ubiquinol oxidase 1, mit	0.717	0.663	0.650	1.7e-86
TAIR|locus:2173353	353	AOX2 "alternative oxidase 2" [	0.663	0.558	0.638	3.6e-86
UNIPROTKB|Q8W855	345	AOX1c "Alternative oxidase" [O	0.690	0.594	0.660	4e-83
DICTYBASE|DDB_G0280819	337	aoxA [Dictyostelium discoideum	0.589	0.519	0.460	1.4e-41
ASPGD|ASPL0000047182	354	AN2099 [Emericella nidulans (t	0.478	0.401	0.534	8.7e-40
UNIPROTKB|O93788	377	AOX1 "Alternative oxidase, mit	0.478	0.376	0.506	4e-39

TAIR|locus:2028311 AOX1D "alternative oxidase 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
 Identities = 167/223 (74%), Positives = 187/223 (83%)

Query:    79 IVSYWGIIPTKVTKEDGSAWRWNCF---------------RHHKPENYRDKFAYWTVQAL 123
             I +YWGI PTK+TK DGSAW+WNCF               +HHKP N+ DKFAYWTVQ L
Sbjct:    68 ISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTL 127

Query:   124 KFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENER 183
             K P  LFFQR+HMCHAMLL+TVAAVPGMVGGMLLH KSLR+FEHSGGWIKALLEEAENER
Sbjct:   128 KIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENER 187

Query:   184 MHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEF 243
             MHLMTFIEL++P+WYERA+VF VQGVFFNAYFLAY+ SPKLAHRI GYLEEEAVNSYTEF
Sbjct:   188 MHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEF 247

Query:   244 LKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQC-QGH 285
             LKD++ G FEN+PAPAIAIDYWR+P D+TLRDVV  I+  + H
Sbjct:   248 LKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAH 290

GO:0005739 "mitochondrion" evidence=ISM

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2087807 AOX1A "alternative oxidase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 153/225 (68%), Positives = 183/225 (81%)

Query:    77 QNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWTVQ 121
             + I SYWG+ P K+TKEDGS W+WNCFR               HH P  + D+ AYWTV+
Sbjct:   102 KGIASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVK 161

Query:   122 ALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAEN 181
             +L++PT LFFQRR+ C AM+L+TVAAVPGMVGGMLLHCKSLR+FE SGGWIKALLEEAEN
Sbjct:   162 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAEN 221

Query:   182 ERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYT 241
             ERMHLMTF+E+A+P+WYERALV  VQGVFFNAYFL YL SPK AHR+VGYLEEEA++SYT
Sbjct:   222 ERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 281

Query:   242 EFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQC-QGH 285
             EFLK+L+ G+ EN PAPAIAIDYWR+P D+TLRDVV+ ++  + H
Sbjct:   282 EFLKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAH 326

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0045333 "cellular respiration" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IEP

TAIR|locus:2087882 AOX1B "alternative oxidase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 154/232 (66%), Positives = 186/232 (80%)

Query:    70 DKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDK 114
             D+    +Q IVSYWG+ P K+TKEDG+ W+W+CFR               HH P    DK
Sbjct:    66 DQGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDK 125

Query:   115 FAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKA 174
              AYWTV++L++PT LFFQRR+ C AM+L+TVAAVPGMVGGML+HCKSLR+FE SGGWIKA
Sbjct:   126 LAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKA 185

Query:   175 LLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEE 234
             LLEEAENERMHLMTF+E+A+P WYERALV AVQG+FFNAYFL YL SPK AHR+VGYLEE
Sbjct:   186 LLEEAENERMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEE 245

Query:   235 EAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQC-QGH 285
             EA++SYTEFLK+L+NG+ EN PAPAIAIDYWR+  D+TLRDVV+ ++  + H
Sbjct:   246 EAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAH 297

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

TAIR|locus:2089124 AOX1C "alternative oxidase 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
 Identities = 147/232 (63%), Positives = 184/232 (79%)

Query:    70 DKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDK 114
             D+    +Q IVSYWG+ P K+TKEDG+ W+W+CFR               HH P    DK
Sbjct:    70 DQGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDK 129

Query:   115 FAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKA 174
              AYW V++L++PT LFFQRR+ C A++L+TVAAVPGMVGGML+H KSLR+FE SGGWIKA
Sbjct:   130 IAYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKA 189

Query:   175 LLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEE 234
             LLEEAENERMHLMTF+E+A+P+WYERALV +VQGVFFNAY + Y+ SPK AHR+VGYLEE
Sbjct:   190 LLEEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEE 249

Query:   235 EAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQC-QGH 285
             EA++SYTEFLK+L+NG+ EN PAPAIA+DYWR+  D+TLRDVV+ ++  + H
Sbjct:   250 EAIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAH 301

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q07185 AOX1 "Ubiquinol oxidase 1, mitochondrial" [Glycine max (taxid:3847)]

 Score = 814 (291.6 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
 Identities = 151/232 (65%), Positives = 185/232 (79%)

Query:    70 DKEEINQQNIVSYWGIIPTKVTKEDGSAWRWNCF---------------RHHKPENYRDK 114
             +KEE   + IVSYWGI P+K+TK+DG+ W+WNCF               +H  P  + DK
Sbjct:    65 NKEE---KVIVSYWGIQPSKITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDK 121

Query:   115 FAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKA 174
              A+WTV+ L++PT +FFQRR+ C AM+L+TVAAVPGMV GMLLHCKSLR+FEHSGGW KA
Sbjct:   122 MAFWTVKVLRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKA 181

Query:   175 LLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEE 234
             LLEEAENERMHLMTF+E+A+P+WYERALV  VQGVFFNAYFL YL SPK AHR+ GYLEE
Sbjct:   182 LLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEE 241

Query:   235 EAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQC-QGH 285
             EA++SYTEFLK+L+ G+ EN PAPAIAIDYW++PP STLRDVV+ ++  + H
Sbjct:   242 EAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAH 293

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173353 AOX2 "alternative oxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 3.6e-86, Sum P(3) = 3.6e-86
 Identities = 136/213 (63%), Positives = 167/213 (78%)

Query:    89 KVTKEDGSAWRWNCF---------------RHHKPENYRDKFAYWTVQALKFPTHLFFQR 133
             K+T++DGS W WNCF               +HH P+N  DK AY  V+ L+ PT +FFQR
Sbjct:   113 KITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQR 172

Query:   134 RHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELA 193
             R+ C AM+L+TVAAVPGMVGGMLLH KS+RKFEHSGGWIKALLEEAENERMHLMT +EL 
Sbjct:   173 RYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELV 232

Query:   194 RPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFE 253
             +P+WYER LV  VQG+FFN++F+ Y+ SP+LAHR+VGYLEEEA++SYTEFLKD++NG  E
Sbjct:   233 KPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIE 292

Query:   254 NAPAPAIAIDYWRMPPDSTLRDVVVDIQC-QGH 285
             N  APAIAIDYWR+P D+TL+DVV  I+  + H
Sbjct:   293 NVAAPAIAIDYWRLPKDATLKDVVTVIRADEAH 325

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;IDA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0010230 "alternative respiration" evidence=ISS

UNIPROTKB|Q8W855 AOX1c "Alternative oxidase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 787 (282.1 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
 Identities = 146/221 (66%), Positives = 177/221 (80%)

Query:    81 SYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWTVQALKF 125
             SYWGI  +K+  +DG  W+W+CFR               HH+P+   DK AYWTV+AL+ 
Sbjct:    97 SYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRV 156

Query:   126 PTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMH 185
             PT +FFQRR+ C AM+L+TVAAVPGMVGGMLLH +SLR+FEHSGGWI+ALLEEAENERMH
Sbjct:   157 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMH 216

Query:   186 LMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK 245
             LMTF+E+A+P+WYERALV AVQGVFFNAYFL YL SPKLAHR+VGYLEEEA++SYTE+LK
Sbjct:   217 LMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLK 276

Query:   246 DLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQC-QGH 285
             D+E G  EN PAP IAIDYWR+P  +TL+DVVV ++  + H
Sbjct:   277 DIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAH 317

GO:0005739 "mitochondrion" evidence=IC

DICTYBASE|DDB_G0280819 aoxA [Dictyostelium discoideum (taxid:44689)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 81/176 (46%), Positives = 126/176 (71%)

Query:   106 HKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKF 165
             ++ ++  D FA ++V  L+  ++LFF+ + + +A++L+TVAAVPG+V GM LH K+LR  
Sbjct:    98 YEAKSLSDNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNM 157

Query:   166 EHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLA 225
             + S  WIK L++E ENERMHL++F+EL +P   ER +V   Q +++N + + Y+ SPK A
Sbjct:   158 Q-SNNWIKILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTA 216

Query:   226 HRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQ 281
             HR  GYLEE+AV +YT  L+D+++G   N  AP IAI+YW +P D+TLRD+++ I+
Sbjct:   217 HRFTGYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIR 272

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000047182 AN2099 [Emericella nidulans (taxid:162425)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 78/146 (53%), Positives = 108/146 (73%)

Query:   140 MLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYE 199
             + L++VA VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A P W+ 
Sbjct:   154 VFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFM 213

Query:   200 RALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGS---FENAP 256
             R +V   QGVFFN +FL+YL SP+  HR VGYLEEEAV +YT  +KDLE+G    +E   
Sbjct:   214 RLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLE 273

Query:   257 APAIAIDYWRMPPDS-TLRDVVVDIQ 281
             AP IA+ YW+MP  + T++D+++ ++
Sbjct:   274 APEIAVKYWKMPEGNRTMKDLLLYVR 299

GO:0005739 "mitochondrion" evidence=IDA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0010230 "alternative respiration" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

UNIPROTKB|O93788 AOX1 "Alternative oxidase, mitochondrial" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 392 (143.0 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 75/148 (50%), Positives = 103/148 (69%)

Query:   140 MLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYE 199
             + L+++AAVPGMV GML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++  P W  
Sbjct:   153 IFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGWLM 212

Query:   200 RALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFE--NAP- 256
             + L+   QGV+FNA F+AYL SPK+ HR VGYLEEEAV++YT  +++LE G     + P 
Sbjct:   213 KILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSDPK 272

Query:   257 --APAIAIDYWRMPPDS-TLRDVVVDIQ 281
                P IA+ YW MP    T+RD+++ I+
Sbjct:   273 FQVPEIAVSYWGMPEGHRTMRDLLLYIR 300

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LEE7	AOX3_ARATH	1, ., -, ., -, ., -	0.6090	0.9494	0.8867	yes	no
Q07185	AOX1_SOYBN	1, ., -, ., -, ., -	0.5329	0.9562	0.8847	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Aox1b RecName- Full=Alternative oxidase; EC=1.-.-.-; (322 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
PLN02478	328	PLN02478, PLN02478, alternative oxidase	1e-158
pfam01786	214	pfam01786, AOX, Alternative oxidase	4e-98
cd01053	168	cd01053, AOX, Alternative oxidase, ferritin-like d	4e-82

>gnl|CDD|215265 PLN02478, PLN02478, alternative oxidase

 Score =  442 bits (1139), Expect = e-158
 Identities = 182/327 (55%), Positives = 211/327 (64%), Gaps = 49/327 (14%)

Query: 20  GANYSSSSLTSGRHLMSRYPA-------------GIVRYWSSASSSSSSSSSSSSAPPVD 66
             N   SS +S  H+ S                 G  R  S  +      +    +    
Sbjct: 2   LCNRLVSSASSASHMKSPLFPAAPMRIGDRAPRFGGFRIGSKHAQEEKKLAEEEESSGKA 61

Query: 67  LPKDKE----EINQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHK 107
                E    +  Q+ IVSYWGI P K+TKEDG+ W+WNCFR               HH 
Sbjct: 62  TENKDEGSTVKGGQKAIVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSIDLKKHHV 121

Query: 108 PENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEH 167
           P+   DK AYWTV++L+ PT LFFQRR+ C AM+L+TVAAVPGMVGGMLLH KSLR+FEH
Sbjct: 122 PKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEH 181

Query: 168 SGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHR 227
           SGGWIKALLEEAENERMHLMTF+E+A+P+WYERALV AVQGVFFNAYFL YL SPK AHR
Sbjct: 182 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYLISPKFAHR 241

Query: 228 IVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV--------- 278
           IVGYLEEEA++SYTEFLKDL+ G  EN PAPAIAIDYWR+P D+TLRDVV          
Sbjct: 242 IVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHH 301

Query: 279 --------DIQCQGHELKDAPAPVGYH 297
                   DI  QG ELK+APAP+GYH
Sbjct: 302 RDVNHFASDIHYQGKELKEAPAPIGYH 328

Length = 328

>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase

 Score =  286 bits (735), Expect = 4e-98
 Identities = 105/184 (57%), Positives = 133/184 (72%), Gaps = 8/184 (4%)

Query: 105 HHKPENYRDKFAYWTVQALKFPTHL-------FFQRRHMCHAMLLQTVAAVPGMVGGMLL 157
           H +P+   DK A++ V+ L++   L         + R +  A+ L+TVA VPGMVGGML 
Sbjct: 15  HREPKTLGDKVAFFLVKFLRWCFDLVTGYRYEMTEERWLHRAIFLETVAGVPGMVGGMLR 74

Query: 158 HCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLA 217
           H +SLR+ +  GGWI+ LLEEAENERMHL+TF+EL +P W+ER LV   QGVFFNA+FL 
Sbjct: 75  HLRSLRRLKRDGGWIETLLEEAENERMHLLTFLELGKPGWFERFLVLLAQGVFFNAFFLL 134

Query: 218 YLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPP-DSTLRDV 276
           YL SP++AHR VGYLEEEAV +YT FLKD+E G   N PAP IAIDYWR+P  D+TLRDV
Sbjct: 135 YLLSPRMAHRFVGYLEEEAVVTYTHFLKDIEAGKLPNVPAPEIAIDYWRLPELDATLRDV 194

Query: 277 VVDI 280
           ++ I
Sbjct: 195 ILVI 198

The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature. Length = 214

>gnl|CDD|153112 cd01053, AOX, Alternative oxidase, ferritin-like diiron-binding domain

 Score =  244 bits (626), Expect = 4e-82
 Identities = 91/150 (60%), Positives = 108/150 (72%)

Query: 131 FQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFI 190
           ++ R +   + L+TVA VPGMV GMLLH  SLR     GGWIK LLEEAENERMHL+ F 
Sbjct: 1   YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFE 60

Query: 191 ELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENG 250
           EL  P W+ R  V   Q VF+NAYFL YL SP+LAHR VGYLEEEAV++YTEFLKD+E G
Sbjct: 61  ELGGPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEG 120

Query: 251 SFENAPAPAIAIDYWRMPPDSTLRDVVVDI 280
              + PAP IAI+Y+R+  D+TL DV V I
Sbjct: 121 LKPDLPAPEIAIEYYRLGEDATLYDVFVAI 150

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular disulfide bridge between monomeric subunits. The enzyme is non-proton-motive and does not contribute to the conservation of energy. The heat that dissipates from AOX activity is used in thermogenic plants to volatilize primary amines to attract pollinating insects. Other functions have been proposed: i) that the alternative oxidase allows Krebs-cycle turnover when the energy charge of the cell is high, and ii) that the enzyme protects against oxidative stress. The expression of AOX is induced when plants are exposed to a variety of stresses including chilling, pathogen attack, senescence and fruit ripening. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
PLN02478	328	alternative oxidase	100.0
PF01786	207	AOX: Alternative oxidase; InterPro: IPR002680 The	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	100.0
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	94.84
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	94.81
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	92.77
COG2941	204	CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym	80.73

>PLN02478 alternative oxidase

Probab=100.00  E-value=4.4e-102  Score=728.07  Aligned_cols=224  Identities=77%  Similarity=1.337  Sum_probs=220.4

Q ss_pred             ccccccccccccCCCcccccCCCcccccccc---------------ccCCCCcchHHHHHHHHHhhhhcccccccccccc
Q 037339           74 INQQNIVSYWGIIPTKVTKEDGSAWRWNCFR---------------HHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCH  138 (297)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~---------------H~~P~~~~Dk~A~~~Vk~LR~~~D~~f~~r~~~R  138 (297)
                      .+++.++||||++++++++|||++|+|+||.               |++|++|+||+|+++||+|||++|+||++||++|
T Consensus        73 ~~~~~~~~ywg~~~~~~~~~dg~~~~w~~~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~f~~R~~~R  152 (328)
T PLN02478         73 GGQKAIVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCR  152 (328)
T ss_pred             cCCeeeeeecccCCcccccCCCCCCCccCcCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhH
Confidence            3558999999999999999999999999994               9999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCchHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 037339          139 AMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAY  218 (297)
Q Consensus       139 ~i~LETVA~VPGmV~gmlrHL~SLR~mkrd~gwI~tLLeEAENERmHLltf~~l~kP~~~~R~lv~~aQgvFfn~ff~~Y  218 (297)
                      ++|||||||||||||||++||+|||+|+||+||||+|||||||||||||||++|++|+|++|++|+++|++|||+||++|
T Consensus       153 ~ifLETVA~VPGmV~gmlrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~w~eR~lv~~aQgvf~~~ff~~Y  232 (328)
T PLN02478        153 AMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGY  232 (328)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhChhhHHhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHH-----------------Hhh
Q 037339          219 LASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVV-----------------DIQ  281 (297)
Q Consensus       219 liSPr~aHRfVGYLEEEAV~TYT~~Lkdid~G~l~n~pAP~IAi~YW~Lp~datLrDVv~-----------------~I~  281 (297)
                      |+|||+|||||||||||||+|||+||+|||+|+|+|+|||+||++||+||+|+||||||+                 ||+
T Consensus       233 LiSPr~aHRfvGYLEEEAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdVNH~~sd~~  312 (328)
T PLN02478        233 LISPKFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDVNHFASDIH  312 (328)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhccCcchhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999                 788


Q ss_pred             cCccccccCCCCCCCC
Q 037339          282 CQGHELKDAPAPVGYH  297 (297)
Q Consensus       282 ~~~~~~~~~~a~~~~~  297 (297)
                      +||+|++++|||+|||
T Consensus       313 ~~~~~~~~~~~~~~~~  328 (328)
T PLN02478        313 YQGKELKEAPAPIGYH  328 (328)
T ss_pred             hcccccCCCCCCCCCC
Confidence            8999999999999999

>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []

Probab=100.00  E-value=4.3e-81  Score=561.27  Aligned_cols=191  Identities=53%  Similarity=0.977  Sum_probs=186.0

Q ss_pred             ccccccccCCCCcchHHHHHHHHHhhhhcccccccccccchhhhhhhccCCchHHHHHHHHHHHhcCCcCcchHHHHHHH
Q 037339           99 RWNCFRHHKPENYRDKFAYWTVQALKFPTHLFFQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEE  178 (297)
Q Consensus        99 ~~~~~~H~~P~~~~Dk~A~~~Vk~LR~~~D~~f~~r~~~R~i~LETVA~VPGmV~gmlrHL~SLR~mkrd~gwI~tLLeE  178 (297)
                      .....+|++|++++|++|+++||+|||++|++|++||++|++|||||||||||||||++||+|||+||||+||||+||||
T Consensus         9 ~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~~~~~r~~~R~~~LEtVA~VPg~v~~~~~Hl~slr~~~rd~g~I~~lleE   88 (207)
T PF01786_consen    9 ESVQVTHREPKTFSDRVAYGIVKFLRWFFDLLFEKRWLHRFIFLETVAGVPGMVGGMVRHLRSLRRMKRDGGWIKTLLEE   88 (207)
T ss_pred             hhcccccCCCCcHHHHHHHHHHHHHHHHHHHhccccchhheeeeeecccCChHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            34456799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCC
Q 037339          179 AENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAP  258 (297)
Q Consensus       179 AENERmHLltf~~l~kP~~~~R~lv~~aQgvFfn~ff~~YliSPr~aHRfVGYLEEEAV~TYT~~Lkdid~G~l~n~pAP  258 (297)
                      |||||||||||++|+||+|++|++++++|++|||+|+++|++|||+|||||||||||||+|||+||+|||+|+|+|+|||
T Consensus        89 aeNErmHLli~~~l~~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~g~l~~~paP  168 (207)
T PF01786_consen   89 AENERMHLLIFEELGKPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDEGKLPNMPAP  168 (207)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCC-CCcHHHHHHHhhcCcccccc
Q 037339          259 AIAIDYWRMPP-DSTLRDVVVDIQCQGHELKD  289 (297)
Q Consensus       259 ~IAi~YW~Lp~-datLrDVv~~I~~~~~~~~~  289 (297)
                      +||++||+||+ ++||||||++||.|+.+=++
T Consensus       169 ~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~  200 (207)
T PF01786_consen  169 EIAIDYWGLPELDATLRDVILAIRADEAEHRD  200 (207)
T ss_pred             HHHHHHhCCCccCchHHHHHHHHHhhHHHHHH
Confidence            99999999999 99999999999999876554

This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=100.00  E-value=1.9e-75  Score=511.03  Aligned_cols=159  Identities=58%  Similarity=0.954  Sum_probs=155.5

Q ss_pred             cccccccchhhhhhhccCCchHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 037339          131 FQRRHMCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVF  210 (297)
Q Consensus       131 f~~r~~~R~i~LETVA~VPGmV~gmlrHL~SLR~mkrd~gwI~tLLeEAENERmHLltf~~l~kP~~~~R~lv~~aQgvF  210 (297)
                      |++||++||+||||||||||||+||++||+|||+||||+||||+|||||||||||||||++|++|+|++|.+|+.+|++|
T Consensus         1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~vf   80 (168)
T cd01053           1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAVF   80 (168)
T ss_pred             CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhChhhHHhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCcccccc
Q 037339          211 FNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELKD  289 (297)
Q Consensus       211 fn~ff~~YliSPr~aHRfVGYLEEEAV~TYT~~Lkdid~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~~~~~~  289 (297)
                      ||+||++|++|||+|||||||||||||+|||+||+|||+|+++|+|||+||++||+||+++||||||++||.|+-+=++
T Consensus        81 y~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~  159 (168)
T cd01053          81 YNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRK  159 (168)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876544

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=94.84  E-value=0.24  Score=44.04  Aligned_cols=97  Identities=25%  Similarity=0.289  Sum_probs=73.1

Q ss_pred             chHHHHHHHH-HHHHHHHHHHHHh-----hCCchHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhhhhhhhhHHHHHHHH
Q 037339          170 GWIKALLEEA-ENERMHLMTFIEL-----ARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEF  243 (297)
Q Consensus       170 gwI~tLLeEA-ENERmHLltf~~l-----~kP~~~~R~lv~~aQgvFfn~ff~~YliSPr~aHRfVGYLEEEAV~TYT~~  243 (297)
                      .-++..++|+ +.|.-||-.|.++     .+|+++-=+.    .+.=|..-++.=++.++.++-|+.-+|+....-|.+-
T Consensus        29 ~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW----~~~gf~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~q  104 (165)
T cd01042          29 PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW----YVAGFALGALTALLGKKAAMACTAAVETVVEEHYNDQ  104 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH----HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence            3466666664 8899999999986     3777644332    2223344445666799999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCccccc
Q 037339          244 LKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELK  288 (297)
Q Consensus       244 Lkdid~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~~~~~  288 (297)
                      |++++.-                  +|..+++.|..+++|+.+=+
T Consensus       105 l~~L~~~------------------~d~~l~~~l~~~r~DE~~H~  131 (165)
T cd01042         105 LRELPAQ------------------PDKELRAIIEQFRDDELEHA  131 (165)
T ss_pred             HHHhhcc------------------CCHHHHHHHHHHHHHHHHHH
Confidence            9999731                  36789999999999886644

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=94.81  E-value=0.24  Score=44.27  Aligned_cols=97  Identities=24%  Similarity=0.270  Sum_probs=73.3

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHh-----hCCchHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhhhhhhhhHHHHHHHHHH
Q 037339          172 IKALLEEA-ENERMHLMTFIEL-----ARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLK  245 (297)
Q Consensus       172 I~tLLeEA-ENERmHLltf~~l-----~kP~~~~R~lv~~aQgvFfn~ff~~YliSPr~aHRfVGYLEEEAV~TYT~~Lk  245 (297)
                      ++..+.|+ ++|.-||-.|.++     ..|+++.=+.    .+.-|..-++.=++.++.+.-++.-+|+....-|.+-|+
T Consensus        34 ~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw----~~~g~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~  109 (172)
T PF03232_consen   34 LRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLW----YVAGFALGALTALLGDKAAMACTAAVETVVEEHYNDQLR  109 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHH----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555 6999999999997     2587754333    334444455567899999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCcccc
Q 037339          246 DLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHEL  287 (297)
Q Consensus       246 did~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~~~~  287 (297)
                      ++.+..               .++|..++++|..+++|+.+=
T Consensus       110 ~L~~~~---------------~~~d~~l~~~i~~~r~DE~~H  136 (172)
T PF03232_consen  110 ELPAMG---------------EEEDPELRAIIEQFRDDELEH  136 (172)
T ss_pred             HHHhcc---------------ccchHHHHHHHHHHHHHHHHH
Confidence            998311               234556999999999987653

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=92.77  E-value=0.22  Score=41.92  Aligned_cols=122  Identities=16%  Similarity=0.145  Sum_probs=84.8

Q ss_pred             hhhhhhccCCchHHHHHHHHHHHhcCCcC-cchHHHHHHHHHHHHHHHHHHHHh-----hCCchHHHHHHHHHHHHHHHH
Q 037339          140 MLLQTVAAVPGMVGGMLLHCKSLRKFEHS-GGWIKALLEEAENERMHLMTFIEL-----ARPQWYERALVFAVQGVFFNA  213 (297)
Q Consensus       140 i~LETVA~VPGmV~gmlrHL~SLR~mkrd-~gwI~tLLeEAENERmHLltf~~l-----~kP~~~~R~lv~~aQgvFfn~  213 (297)
                      +++|-++|.-|=..+++..++.....+.. ..--+.+...|.-|.-|...+.++     ++|.+...+..   .+.+|..
T Consensus        17 ~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~   93 (154)
T cd07908          17 LLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTG   93 (154)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCc
Confidence            56788888888888899999987777642 345677888999999999999886     36765432211   1111111


Q ss_pred             HHHHHHhChhhHHhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCcc
Q 037339          214 YFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGH  285 (297)
Q Consensus       214 ff~~YliSPr~aHRfVGYLEEEAV~TYT~~Lkdid~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~~  285 (297)
                      -.+....++.-+-++.--+|+.|+..|.+.++.+                     +|...++++..|-.+++
T Consensus        94 ~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---------------------~d~~~r~ll~~I~~eE~  144 (154)
T cd07908          94 KYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI---------------------KDPYIRALLNRIILDEK  144 (154)
T ss_pred             cccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHH
Confidence            1112334667789999999999999999998864                     34567777777766654

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]

Probab=80.73  E-value=11  Score=35.05  Aligned_cols=93  Identities=25%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             HHHHHH-HHHHHHHHHHHHHh-----hCCchHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhhhhhhhhHHHHHHHHHHH
Q 037339          173 KALLEE-AENERMHLMTFIEL-----ARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYTEFLKD  246 (297)
Q Consensus       173 ~tLLeE-AENERmHLltf~~l-----~kP~~~~R~lv~~aQgvFfn~ff~~YliSPr~aHRfVGYLEEEAV~TYT~~Lkd  246 (297)
                      +.+|.| ++.|-.||-+|.+.     ..|+++-=+-    -+.-|..-.++=|+++|.++-|+.-.|+.--+-|.+-|+.
T Consensus        73 R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W----~~~~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~  148 (204)
T COG2941          73 RIQLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLW----YAAAFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLRE  148 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHH----HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335555 46788999999885     3676643222    2223344445779999999999999999999999999998


Q ss_pred             hcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCccccc
Q 037339          247 LENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHELK  288 (297)
Q Consensus       247 id~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~~~~~  288 (297)
                      +.+                   .|+.++..|...|+|+.+=+
T Consensus       149 L~~-------------------~d~~lr~~l~qfR~DE~eH~  171 (204)
T COG2941         149 LPN-------------------LDAELRAILAQFRDDELEHL  171 (204)
T ss_pred             Hhh-------------------ccHHHHHHHHHHhhHHHHHH
Confidence            873                   34477777777777776644

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 11/34 (32%)

Query: 233 EEEAVNSYTEFLKDLENGSFE-NAP--APAIAID 263
           E++A       LK L+  S +  A   APA+AI 
Sbjct: 18  EKQA-------LKKLQA-SLKLYADDSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00