Citrus Sinensis ID: 037404
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LS72 | 600 | Pentatricopeptide repeat- | yes | no | 0.971 | 0.98 | 0.623 | 0.0 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.957 | 0.781 | 0.377 | 1e-117 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.945 | 0.775 | 0.354 | 1e-114 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.919 | 0.711 | 0.373 | 1e-112 | |
| O22137 | 613 | Pentatricopeptide repeat- | no | no | 0.900 | 0.889 | 0.360 | 1e-106 | |
| Q1PEU4 | 555 | Pentatricopeptide repeat- | no | no | 0.851 | 0.927 | 0.365 | 1e-105 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.904 | 0.796 | 0.336 | 1e-105 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.947 | 0.822 | 0.322 | 1e-104 | |
| Q9LXF2 | 548 | Pentatricopeptide repeat- | no | no | 0.826 | 0.912 | 0.364 | 1e-104 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.927 | 0.818 | 0.359 | 1e-103 |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/590 (62%), Positives = 464/590 (78%), Gaps = 2/590 (0%)
Query: 2 SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
S P+RAP+W S RR+ EE+LQ+L KC NLNQ KQL AQII+ +L D +IAPKLIS+L+L
Sbjct: 4 SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSL 63
Query: 62 CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
CRQ LA++VFN +Q+P+VHL N+LIRA QNS QAF VF +MQ G+F DNFTYPFL
Sbjct: 64 CRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123
Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
LKAC+G++W +V+M+H I K G DI+VPN+LID YS+CG +GV A KLF M ER
Sbjct: 124 LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183
Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
D VSWNSM+ GLVK GEL +ARRLFDEMP+RD +SWNT+LDGYA+ EM+ AFELFEK+P
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP 243
Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLY 299
RN VSWSTMV GYSK GDMEMA+++FD+MP AK +V WTIII+GYAEKG+ KEA RL
Sbjct: 244 ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLV 303
Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
DQM +GLK D +ISILAAC ESGLL LGM++H+ + + N V NAL+DMYAKC
Sbjct: 304 DQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKC 363
Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
G+L A VFN + KKDLVSWN ML+GL +HG G++A+ LFSRM+ EG PDK TF+ VL
Sbjct: 364 GNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVL 423
Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
C+C HAG ID+G+ YFYSME+ Y ++PQVEHYGC++DLLGR GRLKEA+++VQ+MP+EPN
Sbjct: 424 CSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPN 483
Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
+IWG LLGACR HN V++A+EVLD L++L DPGNY++LSNI+AA DW VA++R +
Sbjct: 484 VVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSK 543
Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
MK +KPSGASSVE+++ +HEF+V D+ HPKS+QIYQM+ +L + P
Sbjct: 544 MKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIEPPDP 593
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/627 (37%), Positives = 351/627 (55%), Gaps = 48/627 (7%)
Query: 21 LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
L LH CK L + + AQ+IK+ L Y KLI L + AI VF IQ+
Sbjct: 37 LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96
Query: 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
P++ ++NT+ R +S A ++++ M G+ +++T+PF+LK+C F Q I
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
H + K G D++V SLI Y + G + A K+F RD+VS+ ++I G G
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNG--RLEDAHKVFDKSPHRDVVSYTALIKGYASRG 214
Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSWSTMV---- 252
+ A++LFDE+P +D VSWN ++ GYA+ G A ELF+ + N+ STMV
Sbjct: 215 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 274
Query: 253 ----------------WG------------------YSKDGDMEMAKLLFDRMPAKTLVP 278
W YSK G++E A LF+R+P K ++
Sbjct: 275 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 334
Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
W +I GY + KEA L+ +M +G P+D T++SIL ACA G + +G +H I+
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 394
Query: 339 KYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
K R K TN + +L+DMYAKCG ++ A VFN + K L SWNAM++G AMHG+ +
Sbjct: 395 K-RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
+ LFSRM+ G PD TFVG+L AC+H+G +D G F +M +DY + P++EHYGCMI
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513
Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
DLLG SG KEA ++ M +EP+ +IW +LL AC+ H VEL E + LI+++ +PG
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573
Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
+Y +LSNI+A+ G WN+VA R + +K G SS+E+D+ VHEF + D+ HP++ +
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633
Query: 576 IYQMINTLGKDLKPVGHAAKLSAEIGE 602
IY M+ + L+ G S + E
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQE 660
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/617 (35%), Positives = 343/617 (55%), Gaps = 45/617 (7%)
Query: 24 LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVH 81
+ +C +L Q KQ +I+ DPY A KL + AL L A KVF++I P+
Sbjct: 37 IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96
Query: 82 LYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
+NTLIRA + FLDM E + + +T+PFL+KA + L Q +H +
Sbjct: 97 AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156
Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
K D+FV NSLI Y CG + A K+F ++ E+D+VSWNSMI G V+ G
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSCG--DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPD 214
Query: 201 EARRLFDEMPERDAVS---------------------------------------WNTIL 221
+A LF +M D + N +L
Sbjct: 215 KALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAML 274
Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
D Y K G + A LF+ + ++ V+W+TM+ GY+ D E A+ + + MP K +V W
Sbjct: 275 DMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNA 334
Query: 282 IISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
+IS Y + G EA ++ +++ + +K + TL+S L+ACA+ G L LG +H+ I K+
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKH 394
Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
+ N +V +AL+ MY+KCG L+ + VFN + K+D+ W+AM+ GLAMHG G +A+ +F
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454
Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
+M++ P+ TF V CAC+H G +D+ F+ ME +YGI+P+ +HY C++D+LGR
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGR 514
Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
SG L++A++ +++MP+ P+ +WG LLGAC+ H + LAE L+ L+ + G + +L
Sbjct: 515 SGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLL 574
Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
SNI+A G W V+ +R M+ T +K G SS+E+D +HEF D HP SE++Y +
Sbjct: 575 SNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKL 634
Query: 581 NTLGKDLKPVGHAAKLS 597
+ + + LK G+ ++S
Sbjct: 635 HEVMEKLKSNGYEPEIS 651
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/570 (37%), Positives = 335/570 (58%), Gaps = 14/570 (2%)
Query: 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
+NL + ++LF ++ +RD ++S A + A VF+ + + + +N L+
Sbjct: 140 RNLGKARELF----EIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALL 195
Query: 88 RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
A VQNS +A +F + + + N +K K Q ++ +
Sbjct: 196 SAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK---KKIVEARQFFDSMNVR---- 248
Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
D+ N++I Y++ G + A++LF +D+ +W +M++G ++ + EAR LFD
Sbjct: 249 -DVVSWNTIITGYAQSG--KIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
+MPER+ VSWN +L GY + M +A ELF+ +P RN+ +W+TM+ GY++ G + AK L
Sbjct: 306 KMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNL 365
Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
FD+MP + V W +I+GY++ G + EA RL+ QME G + + + S L+ CA+ L
Sbjct: 366 FDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVAL 425
Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
LG ++H + K ++ V NAL+ MY KCGS++ A +F M KD+VSWN M+ G
Sbjct: 426 ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 485
Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
+ HG GE AL F MK EG PD T V VL AC+H G +DKG QYFY+M +DYG++P
Sbjct: 486 SRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPN 545
Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
+HY CM+DLLGR+G L++A L+++MP EP+A IWGTLLGA R H ELAE D +
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605
Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
++ + G Y +LSN++A++G W V +R++M+ +K G S +E+ N+ H FSV D
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665
Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
+ HP+ ++I+ + L +K G+ +K S
Sbjct: 666 EFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/597 (36%), Positives = 328/597 (54%), Gaps = 52/597 (8%)
Query: 17 LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV----- 71
+ + L CK + Q+ ++IK + ++ + +++ + A R+ LA
Sbjct: 12 ISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFH 71
Query: 72 --------FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
F +++DP L+N +I++ QA + M E GV D F+ +LK
Sbjct: 72 EYHVCSFSFGEVEDP--FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLK 129
Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
AC+ + IH + K G + D+F+ N LI Y KCG +G L++++F M +RD
Sbjct: 130 ACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLG--LSRQMFDRMPKRDS 187
Query: 184 VSWNSMIAGLVKGGELSEARRLFD----------------------------------EM 209
VS+NSMI G VK G + AR LFD +M
Sbjct: 188 VSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM 247
Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
PE+D +SWN+++DGY K G + A LF+ +P R++V+W+TM+ GY+K G + AK LFD
Sbjct: 248 PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFD 307
Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLG 328
+MP + +V + +++GY + EA ++ ME E+ L PDD TL+ +L A A+ G L
Sbjct: 308 QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLS 367
Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
+ +H I + +F + AL+DMY+KCGS+ +AM VF G+ K + WNAM+ GLA
Sbjct: 368 KAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLA 427
Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
+HG GE A + +++ PD TFVGVL AC+H+G + +G+ F M R + I P++
Sbjct: 428 IHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRL 487
Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
+HYGCM+D+L RSG ++ A L++ MPVEPN +IW T L AC H E E V LI
Sbjct: 488 QHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLIL 547
Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
G +P +Y +LSN++A+ G W V VR MK+ + +K G S +E+D VHEF V
Sbjct: 548 QAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604
|
Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor to recruit C-deaminase. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/523 (36%), Positives = 316/523 (60%), Gaps = 8/523 (1%)
Query: 65 MGLAIKVFND-IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLL 122
+G A K+F+ Q D L N++I+A ++ +F ++ D++++ F DNFT+ L
Sbjct: 26 IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85
Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
K+C+ + +H+ I++ G+ D++V ++D Y+K G +G A+ F M R
Sbjct: 86 KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGC--ARNAFDEMPHRS 143
Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
VSW ++I+G ++ GEL A +LFD+MP +D V +N ++DG+ K+G+M A LF+++
Sbjct: 144 EVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203
Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
H+ +++W+TM+ GY D++ A+ LFD MP + LV W +I GY + +E RL+ +
Sbjct: 204 HKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQE 263
Query: 302 ME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
M+ L PDD T++S+L A +++G L LG H + + + VC A++DMY+KCG
Sbjct: 264 MQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCG 323
Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
++ A +F+ M +K + SWNAM++G A++G AL LF M E PD+ T + V+
Sbjct: 324 EIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVIT 382
Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
AC H G +++G ++F+ M R+ G+ ++EHYGCM+DLLGR+G LKEA L+ +MP EPN
Sbjct: 383 ACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNG 441
Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
II + L AC ++ +E AE +L + L+ + GNY +L N++AA W+ V+ M
Sbjct: 442 IILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVM 501
Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
+K +A+K G S +E++ V EF D HP I+ ++ L
Sbjct: 502 RKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDL 544
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/613 (33%), Positives = 337/613 (54%), Gaps = 66/613 (10%)
Query: 27 CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG----LAIKVFNDIQDPDVHL 82
CK +Q KQL +Q I + +P KL + C ++G A K+F I +PDV +
Sbjct: 44 CKTTDQFKQLHSQSITRGVAPNPTFQKKLF--VFWCSRLGGHVSYAYKLFVKIPEPDVVV 101
Query: 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK---------ACNGKNWFHL 133
+N +I+ + + + R++L+M ++GV D+ T+PFLL AC K
Sbjct: 102 WNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK----- 156
Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
+H + K G +++V N+L+ YS CG++ +A+ +F + D+ SWN MI+G
Sbjct: 157 ---LHCHVVKFGLGSNLYVQNALVKMYSLCGLM--DMARGVFDRRCKEDVFSWNLMISGY 211
Query: 194 VKGGELSEARRLFDEMPERDAVS------------------------------------- 216
+ E E+ L EM ER+ VS
Sbjct: 212 NRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPS 270
Query: 217 ---WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
N +++ YA GEM++A +F + R+++SW+++V GY + G++++A+ FD+MP
Sbjct: 271 LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPV 330
Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
+ + WTI+I GY G E+ ++ +M+ AG+ PD+ T++S+L ACA G L +G +
Sbjct: 331 RDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWI 390
Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
I+K + K + V NAL+DMY KCG + A VF+ M ++D +W AM+ GLA +GQG
Sbjct: 391 KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG 450
Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
++A+ +F +M+D PD T++GVL AC H+G +D+ ++F M D+ I P + HYGC
Sbjct: 451 QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510
Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
M+D+LGR+G +KEA +++ MP+ PN+I+WG LLGA R HN +AE ++ L+ +
Sbjct: 511 MVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDN 570
Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
Y +L NI+A W + VR ++ +K G S +EV+ HEF D+ H +S
Sbjct: 571 GAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQS 630
Query: 574 EQIYQMINTLGKD 586
E+IY + L ++
Sbjct: 631 EEIYMKLEELAQE 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/626 (32%), Positives = 342/626 (54%), Gaps = 53/626 (8%)
Query: 11 FSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
FS ++ +L + + KC +L +Q+F ++ QR+ Y +++ L + A
Sbjct: 51 FSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMP----QRNIYTWNSVVTGLTKLGFLDEAD 106
Query: 70 KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
+F + + D +N+++ Q+ +A F M ++G + +++ +L AC+G N
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLN 166
Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
+ +H+LI K + D+++ ++L+D YSKCG V+ A+++F MG+R++VSWNS+
Sbjct: 167 DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG--NVNDAQRVFDEMGDRNVVSWNSL 224
Query: 190 IAGLVKGGELSEARRLFDEMPE-------------------------------------- 211
I + G EA +F M E
Sbjct: 225 ITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDK 284
Query: 212 --RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
D + N +D YAK + A +F+ +P RN+++ ++M+ GY+ + A+L+F
Sbjct: 285 LRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFT 344
Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
+M + +V W +I+GY + G +EA L+ ++ + P + +IL ACA+ L L
Sbjct: 345 KMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHL 404
Query: 330 GMKVHASINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
GM+ H + K+ FK + V N+L+DMY KCG ++ VF M ++D VSWNAM
Sbjct: 405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAM 464
Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
+ G A +G G +AL LF M + G PD T +GVL AC HAGF+++G YF SM RD+G
Sbjct: 465 IIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFG 524
Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
+ P +HY CM+DLLGR+G L+EA +++ MP++P+++IWG+LL AC+ H + L + V
Sbjct: 525 VAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVA 584
Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
+ L+ ++ S+ G Y +LSN++A G W V NVR M+K K G S +++ H F
Sbjct: 585 EKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVF 644
Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKP 589
V D+ HP+ +QI+ +++ L +++P
Sbjct: 645 MVKDKSHPRKKQIHSLLDILIAEMRP 670
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/543 (36%), Positives = 320/543 (58%), Gaps = 43/543 (7%)
Query: 25 HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHL 82
CKN+ KQ+ A ++ L + + +LI +SL++ + A K+F++I PDV +
Sbjct: 20 QNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSI 79
Query: 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
N ++R Q+ + ++ +M+++GV D +T+ F+LKAC+ W H +
Sbjct: 80 CNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVV 139
Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
+ G+ + +V N+LI ++ CG +G+ A +LF + V+W+SM +G K G++ EA
Sbjct: 140 RHGFVLNEYVKNALILFHANCGDLGI--ASELFDDSAKAHKVAWSSMTSGYAKRGKIDEA 197
Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
RLFDEMP +D V+WN ++ G K EM+ A ELF++ +++V+W+ M
Sbjct: 198 MRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAM----------- 246
Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
ISGY G KEA ++ +M +AG PD T++S+L+ACA
Sbjct: 247 --------------------ISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACA 286
Query: 323 ESGLLGLGMKVH------ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
G L G ++H AS++ + T + NAL+DMYAKCGS+D A+ VF G+ +D
Sbjct: 287 VLGDLETGKRLHIYILETASVSSSIY-VGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRD 345
Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
L +WN ++ GLA+H E ++ +F M+ P++ TF+GV+ AC+H+G +D+G +YF
Sbjct: 346 LSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFS 404
Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
M Y I P ++HYGCM+D+LGR+G+L+EA V+SM +EPNAI+W TLLGAC+ + V
Sbjct: 405 LMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNV 464
Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
EL + + L+ ++ + G+Y +LSNI+A+TG W+ V VR TR +KP+G S +E
Sbjct: 465 ELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEE 524
Query: 557 DNE 559
D++
Sbjct: 525 DDD 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 205/571 (35%), Positives = 317/571 (55%), Gaps = 10/571 (1%)
Query: 29 NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
+N KQ+ +I L D ++ L+ RQ + +F+ Q P++ LYN+LI
Sbjct: 25 TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84
Query: 89 ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
V N L + +FL +++ G++ FT+P +LKAC + L +H+L+ KCG+
Sbjct: 85 GFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144
Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
D+ SL+ YS G ++ A KLF + +R +V+W ++ +G G EA LF +
Sbjct: 145 DVAAMTSLLSIYSGSG--RLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 209 MPER----DAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
M E D+ +L G+++ + + E +N +T+V Y+K G
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
ME A+ +FD M K +V W+ +I GYA KE L+ QM + LKPD +++ L++
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
CA G L LG + I+++ F N + NAL+DMYAKCG++ VF M +KD+V
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382
Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
NA + GLA +G + + +F + + G PD TF+G+LC C HAG I G+++F ++
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442
Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
Y + VEHYGCM+DL GR+G L +A RL+ MP+ PNAI+WG LL CR +LAE
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502
Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
VL LI L+ + GNY LSNI++ G W++ A VR M K +K G S +E++ +V
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562
Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
HEF D+ HP S++IY + LG +++ +G
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 255584337 | 604 | pentatricopeptide repeat-containing prot | 0.983 | 0.985 | 0.714 | 0.0 | |
| 225452922 | 594 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.988 | 0.701 | 0.0 | |
| 449433085 | 601 | PREDICTED: pentatricopeptide repeat-cont | 0.973 | 0.980 | 0.654 | 0.0 | |
| 356523586 | 604 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.980 | 0.639 | 0.0 | |
| 356568696 | 604 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.980 | 0.640 | 0.0 | |
| 15228653 | 600 | pentatricopeptide repeat-containing prot | 0.971 | 0.98 | 0.623 | 0.0 | |
| 297815228 | 629 | pentatricopeptide repeat-containing prot | 0.991 | 0.953 | 0.619 | 0.0 | |
| 357502061 | 605 | Pentatricopeptide repeat-containing prot | 0.981 | 0.981 | 0.608 | 0.0 | |
| 224077718 | 427 | predicted protein [Populus trichocarpa] | 0.649 | 0.920 | 0.748 | 0.0 | |
| 326528029 | 639 | predicted protein [Hordeum vulgare subsp | 0.955 | 0.904 | 0.485 | 1e-163 |
| >gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/595 (71%), Positives = 496/595 (83%)
Query: 1 MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
MS P RAPTW S RRL EEKLQ+LHKC + N K++ AQIIK +L D Y+APKLIS+ +
Sbjct: 7 MSLPTRAPTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFS 66
Query: 61 LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
LC QM LA+ VFN IQDP+VHLYNTLIRA VQNS + +AF F DMQ+ G+F DNFTYPF
Sbjct: 67 LCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPF 126
Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
LLKACNGK W VQMIH + K G+FGD+FVPNSLIDSYSKCG++GV+ A KLFM MGE
Sbjct: 127 LLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGE 186
Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
+D+VSWNSMI GLVK G+L AR+LFDEM ERDAVSWNTILDGY KAGEM+ AF LFEK+
Sbjct: 187 KDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKM 246
Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
P RN+VSWSTMV GY K GDMEMA++LFD+MP K LV WTIIISG+AEKG+AKEA LY+
Sbjct: 247 PERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYN 306
Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
QME AGLKPDDGTLISILAACAESGLL LG KVHASI K R KC+ NV NALVDMYAKCG
Sbjct: 307 QMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCG 366
Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
+D A+S+FN M+ +DLVSWN ML GLAMHG GEKA+ LFS+M+ EGF PDK T + +LC
Sbjct: 367 RVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILC 426
Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
ACTHAGF+D+G+ YF SMERD+GI+P +EHYGCMIDLLGR GRL+EA RLVQSMP+EPN
Sbjct: 427 ACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPND 486
Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
+IWGTLLGACR HNAV LAE+VLD LI L+ SDPGNY+MLSNIFAA GDWN VAN+RLQM
Sbjct: 487 VIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQM 546
Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
K T QKPSGASS+E+D+EVHEF+V D+ HP++++IYQ++ LG+DLK V +A +
Sbjct: 547 KSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIYQILVKLGQDLKQVAYAPE 601
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/587 (70%), Positives = 492/587 (83%)
Query: 1 MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
MS PIR PTW SKRRLLE+K+ +LH+C +LNQ KQ+ AQ++K +L R+ ++ KLI++ +
Sbjct: 1 MSVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS 60
Query: 61 LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
LCRQM LA+ VFN IQDPDV LYNTLIRA V+NS AF VF +MQ+ GV DNFTYPF
Sbjct: 61 LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPF 120
Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
LLKAC+GK W +V+MIHA + K G+ DIFVPNSLIDSY KCG+ GV+ A+K+F M E
Sbjct: 121 LLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAE 180
Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
RD VSWNSMI GLVK GEL EARRLFDEMPERD VSWNTILDGY KAGEMN AFELFEK+
Sbjct: 181 RDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKM 240
Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
P RN+VSWSTMV GYSK GDM+MA++LFD+MP K LVPWTI+ISGYAEKG+AK+A LY+
Sbjct: 241 PARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYN 300
Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
QMEEAGLK DDGT+ISIL+ACA SGLLGLG +VHASI + RFKC+T V NAL+DMYAKCG
Sbjct: 301 QMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCG 360
Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
SL+NA+S+F+GM +KD+VSWNA++ GLAMHG GEKAL LFSRMK EGF PDK TFVGVLC
Sbjct: 361 SLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLC 420
Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
ACTHAGF+D+G+ YF++MERDYG+ P+VEHYGCM+DLLGR GRLKEA RLV SMP+EPNA
Sbjct: 421 ACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNA 480
Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
IIWGTLLGACR H+A LAEEV D L++ + SD GN +MLSNI+AA GDW+ AN+RL+M
Sbjct: 481 IIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRM 540
Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
K T QKPSG SS+EVD+EVHEF+V D+ HPKS++IY+ I+ LG+ +
Sbjct: 541 KSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGLGQHI 587
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/590 (65%), Positives = 473/590 (80%), Gaps = 1/590 (0%)
Query: 2 SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
S PIR P+WFS R+LLE+KL +LHKC NLNQ KQL AQI+K +L D ++ PKLIS+ +L
Sbjct: 5 SVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSL 64
Query: 62 CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
CRQM LA FN +Q P+VHLYNT+IRA NS +QAF F MQ G + DNFT+PFL
Sbjct: 65 CRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFL 124
Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-E 180
LK C G W +++ +HA I K G+ D+FVPNSLIDSYSKCG G+S AKKLF+SMG
Sbjct: 125 LKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGAR 184
Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
RD+VSWNSMI+GL KGG EAR++FDEMPE+D +SWNT+LDGY K G+M+ AF+LF+++
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 244
Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
P RN+VSWSTMV GY K GDMEMA++LFD+MP K LV WTII+SG+AEKG+A+EA L+D
Sbjct: 245 PERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFD 304
Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
QME+A LK D+GT++SILAACAESGLLGLG K+HASI FKC T + NALVDMYAKCG
Sbjct: 305 QMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCG 364
Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
L+ A VFN + KD+VSWNAML GLAMHG G KAL LF RMK+EGF P+K T +GVLC
Sbjct: 365 RLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLC 424
Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
ACTHAG ID G++YF +MERDY ++P+VEHYGCM+DLLGR GRL+EA+RL+++MP+ PNA
Sbjct: 425 ACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNA 484
Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
IIWGTLLGACR HNAVELA EVLD L+ L+ +D GN++MLSNI+AA GDWN VAN RL+M
Sbjct: 485 IIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRM 544
Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
+ +KPSGASS+EV+NEVHEF+V D+ HPKS+ IYQ+IN L +LK V
Sbjct: 545 RSIGTKKPSGASSIEVNNEVHEFTVFDRSHPKSDNIYQVINGLRHELKQV 594
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/596 (63%), Positives = 472/596 (79%), Gaps = 4/596 (0%)
Query: 1 MSAPI--RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
M P+ R PTWFS++RLLEEKL +LHKC NL+ Q+ AQ++K +L +D ++APKLI++
Sbjct: 3 MQVPVGGRVPTWFSRQRLLEEKLCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAA 62
Query: 59 LALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFT 117
+LCR + A+ VFN + P+VHLYN++IRA N+ + F F MQ+ G+F DNFT
Sbjct: 63 FSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFT 122
Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
YPFLLKAC G + LV+MIHA + K G++GDIFVPNSLIDSYS+CG G+ A LF++
Sbjct: 123 YPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLA 182
Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
M ERD+V+WNSMI GLV+ GEL A +LFDEMPERD VSWNT+LDGYAKAGEM+ AFELF
Sbjct: 183 MKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELF 242
Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
E++P RNIVSWSTMV GYSK GDM+MA++LFDR PAK +V WT II+GYAEKG +EA
Sbjct: 243 ERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATE 302
Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
LY +MEEAGL+PDDG LISILAACAESG+LGLG ++HAS+ ++RF+C T V NA +DMYA
Sbjct: 303 LYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYA 362
Query: 358 KCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
KCG LD A VF+G M KKD+VSWN+M+ G AMHG GEKAL LFSRM EGF PD YTFV
Sbjct: 363 KCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFV 422
Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
G+LCACTHAG +++G +YFYSME+ YGI+PQVEHYGCM+DLLGR G LKEA L++SMP+
Sbjct: 423 GLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPM 482
Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
EPNAII GTLL ACR HN V+ A V + L +++ +DPGNY++LSNI+A GDW VANV
Sbjct: 483 EPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANV 542
Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
RLQM T QKPSGASS+EV+ EVHEF+V DQ HPKS+ IY+MI+ L +DL+ VG+
Sbjct: 543 RLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQVGY 598
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/596 (64%), Positives = 475/596 (79%), Gaps = 4/596 (0%)
Query: 1 MSAPI--RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
M P+ R PTWFS+RRLLEEKL +LHKC NL+ Q+ AQ++K +L +D ++APKLI++
Sbjct: 3 MQVPVGGRVPTWFSRRRLLEEKLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAA 62
Query: 59 LALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN-AQAFRVFLDMQEKGVFTDNFT 117
+LCR + A+ VFN + P+VHLYN++IRA NS + + F F MQ+ G+F DNFT
Sbjct: 63 FSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFT 122
Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
YPFLLKAC+G + LV+MIHA + K G++GDIFVPNSLIDSYS+CG G+ A LF++
Sbjct: 123 YPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLA 182
Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
M ERD+V+WNSMI GLV+ GEL A +LFDEMP+RD VSWNT+LDGYAKAGEM+ AFELF
Sbjct: 183 MEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELF 242
Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
E++P RNIVSWSTMV GYSK GDM+MA++LFDR P K +V WT II+GYAEKG+A+EA
Sbjct: 243 ERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATE 302
Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
LY +MEEAG++PDDG L+SILAACAESG+LGLG ++HAS+ ++RF+C V NA +DMYA
Sbjct: 303 LYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYA 362
Query: 358 KCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
KCG LD A VF+G M KKD+VSWN+M+ G AMHG GEKAL LFS M EGF PD YTFV
Sbjct: 363 KCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFV 422
Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
G+LCACTHAG +++G +YFYSME+ YGI+PQVEHYGCM+DLLGR G LKEA L++SMP+
Sbjct: 423 GLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPM 482
Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
EPNAII GTLL ACR HN V+LA V + L +L+ SDPGNY++LSNI+A GDW VANV
Sbjct: 483 EPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANV 542
Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
RLQMK T +KPSGASS+EV+ EVHEF+V DQ HPKS+ IYQMI+ L +DL+ VG+
Sbjct: 543 RLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQVGY 598
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana] gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/590 (62%), Positives = 464/590 (78%), Gaps = 2/590 (0%)
Query: 2 SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
S P+RAP+W S RR+ EE+LQ+L KC NLNQ KQL AQII+ +L D +IAPKLIS+L+L
Sbjct: 4 SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSL 63
Query: 62 CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
CRQ LA++VFN +Q+P+VHL N+LIRA QNS QAF VF +MQ G+F DNFTYPFL
Sbjct: 64 CRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123
Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
LKAC+G++W +V+M+H I K G DI+VPN+LID YS+CG +GV A KLF M ER
Sbjct: 124 LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183
Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
D VSWNSM+ GLVK GEL +ARRLFDEMP+RD +SWNT+LDGYA+ EM+ AFELFEK+P
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP 243
Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLY 299
RN VSWSTMV GYSK GDMEMA+++FD+MP AK +V WTIII+GYAEKG+ KEA RL
Sbjct: 244 ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLV 303
Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
DQM +GLK D +ISILAAC ESGLL LGM++H+ + + N V NAL+DMYAKC
Sbjct: 304 DQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKC 363
Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
G+L A VFN + KKDLVSWN ML+GL +HG G++A+ LFSRM+ EG PDK TF+ VL
Sbjct: 364 GNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVL 423
Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
C+C HAG ID+G+ YFYSME+ Y ++PQVEHYGC++DLLGR GRLKEA+++VQ+MP+EPN
Sbjct: 424 CSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPN 483
Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
+IWG LLGACR HN V++A+EVLD L++L DPGNY++LSNI+AA DW VA++R +
Sbjct: 484 VVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSK 543
Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
MK +KPSGASSVE+++ +HEF+V D+ HPKS+QIYQM+ +L + P
Sbjct: 544 MKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIEPPDP 593
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/602 (61%), Positives = 467/602 (77%), Gaps = 2/602 (0%)
Query: 2 SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
S P+RAP+W S RR+ EE+LQ+L KC NLNQ KQL AQII+ +L +D +IAPKLIS+L+L
Sbjct: 4 SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSL 63
Query: 62 CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
CRQ LA++VFN +Q+P+VHL N+LIRA NS QAF VF +MQ G+F DNFTYPFL
Sbjct: 64 CRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123
Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
LKAC+G +W +V+M+H I K G DI+VPN+LID YS+CG +GV A KLF M ER
Sbjct: 124 LKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183
Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
D VSWNSM+ GLVK GEL +AR+LFDEMP+RD +SWNT+LDGYA+ EM+ AFELFEK+P
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMP 243
Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLY 299
RN VSWSTMV GYSK GDMEMA+++FD+MP AK +V WTIII+GYAEKG+ KEA +L
Sbjct: 244 ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLV 303
Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
DQM +GL+ D ISILAACAESGLL LGM+ H+ I K N +V NAL+DMYAKC
Sbjct: 304 DQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKC 363
Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
GSL A VFN M KKDLVSWN ML+GL +HG G++A+ LFSRM+ EG PDK TF+ VL
Sbjct: 364 GSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVL 423
Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
C+C HAG ID+G+ YFYSME+ Y ++P+VEHYGC++DLLGR GRLKEA+++VQ+MP+EPN
Sbjct: 424 CSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPN 483
Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
+IWG LLGACR HN V++A+EVLD L++L SDPGNYT+LSNI+AA DW VA++R +
Sbjct: 484 VVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSK 543
Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAE 599
MK +KPSGASSVE+++ +HEF+V D+ HPKS+QIYQM+ +L + P LS
Sbjct: 544 MKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIEPQDPDMEVLVLSPT 603
Query: 600 IG 601
G
Sbjct: 604 TG 605
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/601 (60%), Positives = 452/601 (75%), Gaps = 7/601 (1%)
Query: 1 MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
+++ IRA TWFS RR LEE + +LHKC N N KQ+ AQ+IK L +DPYIAPKLI+S +
Sbjct: 6 VASSIRAFTWFSLRRHLEENITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYS 65
Query: 61 LCRQMGLAIKVFNDIQDPDVHLYNTLIRACV---QNSLNAQAFRVFLDMQEKGVFTDNFT 117
L + A+ VFN + DP+VHLYN LIRA S + AF V L M GV DNFT
Sbjct: 66 LTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFT 125
Query: 118 YPFLLKACNGKN-WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
YPFLLK CNG + W LV+M+HA + K G++ DIFVPNSLID Y +CG V +A K+F
Sbjct: 126 YPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCG--DVEMAMKVFS 183
Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
M ERD+VSWNSM+ GLVK G+L A ++FDEMPERD VSWNT+LDG+ KAGEM+ AF+L
Sbjct: 184 GMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKL 243
Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
FE++ R+IVSWSTMV GYSK+GDM+MA++LFDR P K LV WT IISGYAEKG KEA
Sbjct: 244 FERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAM 303
Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
L D+ME++GL+ DDG ISILAACAESG+LGLG K+H S + RF+C+T V N+ +DMY
Sbjct: 304 NLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMY 363
Query: 357 AKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
AKCG +D+A VFNGM T+KDLVSWN+M++G +HG GEK++ LF+ M EGF PD+YTF
Sbjct: 364 AKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTF 423
Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
+G+LCACTHAG +++G YFYSM+R YGI+PQ+EHYGCM+DLLGR G LKEA LV+SMP
Sbjct: 424 IGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMP 483
Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
EPNAII GTLLGACR HN V+LA V L +L SDPGN+++LSNI+A +GDW VA
Sbjct: 484 FEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAK 543
Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
VR QM QKPSG SS+EV+ EVHEF+V D HPKS IY MI+ L DL+ VG+ +
Sbjct: 544 VRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLVHDLRQVGYVPR 603
Query: 596 L 596
L
Sbjct: 604 L 604
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/418 (74%), Positives = 358/418 (85%)
Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
+LF M ERD+VSWNSMI GL+K GELSEA +LFDEMP +DAVSWNTILDGY KAGEMN
Sbjct: 2 RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61
Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
AF LFE +P RN+VSWSTMV GY K GDMEMA++LFDRMP K LV WTII+SGYA KG+A
Sbjct: 62 AFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLA 121
Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
K+A R ++QMEEAGLKPDDGT+ISILA+CAESGLLGLG +VH SI + R+KC+ NV NAL
Sbjct: 122 KDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNAL 181
Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
VDMYAKCG +D A+SVFNGM+KKDLVSWN ML GLAMHG GEKAL LFS M+ EGF PDK
Sbjct: 182 VDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDK 241
Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
T V VLCAC HAGF+D+G++YF +MERDYGI+P +EHYGCM+DLLGR GRLKEA RLVQ
Sbjct: 242 VTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQ 301
Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
SMPVEPN +IWGTLLGACR HNAV LAEEVLDCL +L+ SDPGNY++LSNIFA+ GDW+
Sbjct: 302 SMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSS 361
Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
VANVRLQMK QKPSGASS+EVD+EVHEF+V D+ HPKS++IYQMIN LG DLK V
Sbjct: 362 VANVRLQMKNFGIQKPSGASSIEVDDEVHEFTVFDKSHPKSDKIYQMINRLGLDLKRV 419
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/591 (48%), Positives = 409/591 (69%), Gaps = 13/591 (2%)
Query: 7 APTWF--SKRRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
AP W S+RRL+E+ L +L H ++L+ ++L AQ++K L DP A KLISS AL R
Sbjct: 45 APRWGAPSQRRLVEQHLASLPHGLQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQR 104
Query: 64 QMGLAIKVFNDIQDPDVHLY--NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
++ + ++F +P + NTL+RA N+L A +F M ++ D+FTY FL
Sbjct: 105 RLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQR----DSFTYSFL 160
Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
+KA + L + +H+ + K G D +V N+LID+YSK G G A K+F M R
Sbjct: 161 IKALSSSGLTPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNG--GFLDASKVFEEMPRR 217
Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
D VSWNS +A +V+ GE++ ARR+FDEMP++D VSWNT+LDGY KAG+M AFELF+ +P
Sbjct: 218 DTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMP 277
Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
RN+VSWST+V GY K GD+EMA+++FD+MP K LV WTI++S A+ G+ +EA RL+ Q
Sbjct: 278 ERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQ 337
Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
M+EA ++ D ++SILAACAESG L LG ++H + + +T+VCNA++DM+ KCG
Sbjct: 338 MKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGC 397
Query: 362 LDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
++ A VF+ + +KD VSWN ++ G AMHG G+KAL F++MK +GF PD T + VL
Sbjct: 398 VNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLS 457
Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
ACTH GF+++G Q+F +MERDYGI+PQ+EHYGCMIDLLGR G ++EA+ L++SMP +PN
Sbjct: 458 ACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNE 517
Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
+IWG+LL ACR H VE AE ++ L +L+ S+ GNY +LSNI+A G W+ +A R+QM
Sbjct: 518 VIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQM 577
Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
K T +QK +G+S +E+D HEF+V D+ H S+QI +M++ L +K VG
Sbjct: 578 KGTGSQKSAGSSWIELDEAFHEFTVGDRKHSDSDQISEMVDRLSSHVKDVG 628
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| TAIR|locus:2094812 | 600 | AT3G29230 "AT3G29230" [Arabido | 0.961 | 0.97 | 0.628 | 1.1e-204 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.919 | 0.711 | 0.375 | 2.3e-103 | |
| TAIR|locus:2054966 | 555 | AHG11 "ABA hypersensitive germ | 0.851 | 0.927 | 0.365 | 3.9e-99 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.925 | 0.817 | 0.359 | 4.7e-96 | |
| TAIR|locus:2151694 | 550 | AT5G37570 "AT5G37570" [Arabido | 0.876 | 0.963 | 0.358 | 7.6e-96 | |
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.687 | 0.877 | 0.416 | 8.7e-95 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.852 | 0.696 | 0.358 | 8.3e-90 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.938 | 0.688 | 0.347 | 8.6e-88 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.904 | 0.655 | 0.342 | 1.6e-86 | |
| TAIR|locus:4515103421 | 654 | AT4G19191 "AT4G19191" [Arabido | 0.905 | 0.837 | 0.342 | 1.8e-85 |
| TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1980 (702.1 bits), Expect = 1.1e-204, P = 1.1e-204
Identities = 367/584 (62%), Positives = 462/584 (79%)
Query: 2 SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
S P+RAP+W S RR+ EE+LQ+L KC NLNQ KQL AQII+ +L D +IAPKLIS+L+L
Sbjct: 4 SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSL 63
Query: 62 CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
CRQ LA++VFN +Q+P+VHL N+LIRA QNS QAF VF +MQ G+F DNFTYPFL
Sbjct: 64 CRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123
Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
LKAC+G++W +V+M+H I K G DI+VPN+LID YS+CG +GV A KLF M ER
Sbjct: 124 LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183
Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
D VSWNSM+ GLVK GEL +ARRLFDEMP+RD +SWNT+LDGYA+ EM+ AFELFEK+P
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP 243
Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLY 299
RN VSWSTMV GYSK GDMEMA+++FD+MP AK +V WTIII+GYAEKG+ KEA RL
Sbjct: 244 ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLV 303
Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
DQM +GLK D +ISILAAC ESGLL LGM++H+ + + N V NAL+DMYAKC
Sbjct: 304 DQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKC 363
Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
G+L A VFN + KKDLVSWN ML+GL +HG G++A+ LFSRM+ EG PDK TF+ VL
Sbjct: 364 GNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVL 423
Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
C+C HAG ID+G+ YFYSME+ Y ++PQVEHYGC++DLLGR GRLKEA+++VQ+MP+EPN
Sbjct: 424 CSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPN 483
Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
+IWG LLGACR HN V++A+EVLD L++L DPGNY++LSNI+AA DW VA++R +
Sbjct: 484 VVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSK 543
Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
MK +KPSGASSVE+++ +HEF+V D+ HPKS+QIYQM+ +L
Sbjct: 544 MKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSL 587
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
Identities = 214/570 (37%), Positives = 336/570 (58%)
Query: 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
+NL + ++LF +I+ +RD ++S A + A VF+ + + + +N L+
Sbjct: 140 RNLGKARELF-EIMP---ERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALL 195
Query: 88 RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
A VQNS +A +F + + + N +K K Q ++ +
Sbjct: 196 SAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK---KKIVEARQFFDSMNVR---- 248
Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
D+ N++I Y++ G + A++LF +D+ +W +M++G ++ + EAR LFD
Sbjct: 249 -DVVSWNTIITGYAQSGKIDE--ARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305
Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
+MPER+ VSWN +L GY + M +A ELF+ +P RN+ +W+TM+ GY++ G + AK L
Sbjct: 306 KMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNL 365
Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
FD+MP + V W +I+GY++ G + EA RL+ QME G + + + S L+ CA+ L
Sbjct: 366 FDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVAL 425
Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
LG ++H + K ++ V NAL+ MY KCGS++ A +F M KD+VSWN M+ G
Sbjct: 426 ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 485
Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
+ HG GE AL F MK EG PD T V VL AC+H G +DKG QYFY+M +DYG++P
Sbjct: 486 SRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPN 545
Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
+HY CM+DLLGR+G L++A L+++MP EP+A IWGTLLGA R H ELAE D +
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605
Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
++ + G Y +LSN++A++G W V +R++M+ +K G S +E+ N+ H FSV D
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665
Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
+ HP+ ++I+ + L +K G+ +K S
Sbjct: 666 EFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695
|
|
| TAIR|locus:2054966 AHG11 "ABA hypersensitive germination 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 191/523 (36%), Positives = 316/523 (60%)
Query: 65 MGLAIKVFNDI-QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLL 122
+G A K+F+ Q D L N++I+A ++ +F ++ D++++ F DNFT+ L
Sbjct: 26 IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85
Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
K+C+ + +H+ I++ G+ D++V ++D Y+K G +G A+ F M R
Sbjct: 86 KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGC--ARNAFDEMPHRS 143
Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
VSW ++I+G ++ GEL A +LFD+MP +D V +N ++DG+ K+G+M A LF+++
Sbjct: 144 EVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203
Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
H+ +++W+TM+ GY D++ A+ LFD MP + LV W +I GY + +E RL+ +
Sbjct: 204 HKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQE 263
Query: 302 MEEA-GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
M+ L PDD T++S+L A +++G L LG H + + + VC A++DMY+KCG
Sbjct: 264 MQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCG 323
Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
++ A +F+ M +K + SWNAM++G A++G AL LF M E PD+ T + V+
Sbjct: 324 EIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVIT 382
Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
AC H G +++G ++F+ M R+ G+ ++EHYGCM+DLLGR+G LKEA L+ +MP EPN
Sbjct: 383 ACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNG 441
Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
II + L AC ++ +E AE +L + L+ + GNY +L N++AA W+ V+ M
Sbjct: 442 IILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVM 501
Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
+K +A+K G S +E++ V EF D HP I+ ++ L
Sbjct: 502 RKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDL 544
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 205/570 (35%), Positives = 318/570 (55%)
Query: 30 LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
+N KQ+ +I L D ++ L+ RQ + +F+ Q P++ LYN+LI
Sbjct: 26 VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLING 85
Query: 90 CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
V N L + +FL +++ G++ FT+P +LKAC + L +H+L+ KCG+ D
Sbjct: 86 FVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHD 145
Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
+ SL+ YS G ++ A KLF + +R +V+W ++ +G G EA LF +M
Sbjct: 146 VAAMTSLLSIYSGSG--RLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKM 203
Query: 210 PER----DAVSWNTILDGYAKAGEMNLA---FELFEKIP-HRNIVSWSTMVWGYSKDGDM 261
E D+ +L G+++ + E++ +N +T+V Y+K G M
Sbjct: 204 VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKM 263
Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
E A+ +FD M K +V W+ +I GYA KE L+ QM + LKPD +++ L++C
Sbjct: 264 EKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSC 323
Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
A G L LG + I+++ F N + NAL+DMYAKCG++ VF M +KD+V N
Sbjct: 324 ASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMN 383
Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
A + GLA +G + + +F + + G PD TF+G+LC C HAG I G+++F ++
Sbjct: 384 AAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCV 443
Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
Y + VEHYGCM+DL GR+G L +A RL+ MP+ PNAI+WG LL CR +LAE
Sbjct: 444 YALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAET 503
Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
VL LI L+ + GNY LSNI++ G W++ A VR M K +K G S +E++ +VH
Sbjct: 504 VLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVH 563
Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
EF D+ HP S++IY + LG +++ +G
Sbjct: 564 EFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593
|
|
| TAIR|locus:2151694 AT5G37570 "AT5G37570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 192/536 (35%), Positives = 316/536 (58%)
Query: 21 LQNLHK-CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-MGLAIKVFNDIQDP 78
L+ L K CK+ Q+ A+II+ L++D + ISS + + + VF + P
Sbjct: 13 LETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSP 72
Query: 79 DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMI 137
+L+N LI+ L + + + M G+ D +T+P ++K C+ + +
Sbjct: 73 GTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSV 132
Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
H L+ + G+ D+ V S +D Y KC + A+K+F M ER+ VSW +++ VK G
Sbjct: 133 HGLVLRIGFDKDVVVGTSFVDFYGKCK--DLFSARKVFGEMPERNAVSWTALVVAYVKSG 190
Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
EL EA+ +FD MPER+ SWN ++DG K+G++ A +LF+++P R+I+S+++M+ GY+K
Sbjct: 191 ELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250
Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
GDM A+ LF+ + W+ +I GYA+ G EA +++ +M +KPD+ ++ +
Sbjct: 251 GGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGL 310
Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
++AC++ G L KV + +++ K +++ V AL+DM AKCG +D A +F M ++D
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRD 370
Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
LVS+ +M+ G+A+HG G +A+ LF +M DEG PD+ F +L C + +++G++YF
Sbjct: 371 LVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFE 430
Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
M + Y IL +HY C+++LL R+G+LKEA L++SMP E +A WG+LLG C H
Sbjct: 431 LMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNT 490
Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
E+AE V L L+ G+Y +LSNI+AA W VA++R +M + K G S
Sbjct: 491 EIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546
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| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 174/418 (41%), Positives = 269/418 (64%)
Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
++ A K+F M E+++V W SMI G + +L ARR FD PERD V WNT++ GY +
Sbjct: 44 IASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEM 103
Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
G M A LF+++P R+++SW+T++ GY+ GDME + +FD MP + + W +I GYA
Sbjct: 104 GNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYA 163
Query: 288 EKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF-KCN 345
+ G E + +M +E + P+D T+ +L+ACA+ G G VH + K +
Sbjct: 164 QNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVD 223
Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
NV NAL+DMY KCG+++ AM VF G+ ++DL+SWN M+ GLA HG G +AL LF MK+
Sbjct: 224 VNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKN 283
Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
G PDK TFVGVLCAC H G ++ G+ YF SM D+ I+P++EH GC++DLL R+G L
Sbjct: 284 SGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLT 343
Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
+A+ + MPV+ +A+IW TLLGA + + V++ E L+ LI+L+ +P N+ MLSNI+
Sbjct: 344 QAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYG 403
Query: 526 ATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
G ++ A +++ M+ T +K +G S +E D+ + +F + HP++E++ +++ L
Sbjct: 404 DAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRILREL 461
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| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 193/538 (35%), Positives = 310/538 (57%)
Query: 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC--NGKNWFHLVQ 135
P+ + + ++++C ++ + ++ + + G D + + L+ NG+ ++
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR-----LE 186
Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
H + K + D+ +LI Y+ G + A+KLF + +D+VSWN+MI+G +
Sbjct: 187 DAHKVFDKSPH-RDVVSYTALIKGYASRGYI--ENAQKLFDEIPVKDVVSWNAMISGYAE 243
Query: 196 GGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIP-H---RNIVS 247
G EA LF +M + D + T++ A++G + L ++ I H N+
Sbjct: 244 TGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKI 303
Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
+ ++ YSK G++E A LF+R+P K ++ W +I GY + KEA L+ +M +G
Sbjct: 304 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 363
Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN---ALVDMYAKCGSLDN 364
P+D T++SIL ACA G + +G +H I+K R K TN + +L+DMYAKCG ++
Sbjct: 364 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKGVTNASSLRTSLIDMYAKCGDIEA 422
Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
A VFN + K L SWNAM++G AMHG+ + + LFSRM+ G PD TFVG+L AC+H
Sbjct: 423 AHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSH 482
Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
+G +D G F +M +DY + P++EHYGCMIDLLG SG KEA ++ M +EP+ +IW
Sbjct: 483 SGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWC 542
Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
+LL AC+ H VEL E + LI+++ +PG+Y +LSNI+A+ G WN+VA R +
Sbjct: 543 SLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKG 602
Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
+K G SS+E+D+ VHEF + D+ HP++ +IY M+ + L+ G S + E
Sbjct: 603 MKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQE 660
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| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 202/581 (34%), Positives = 318/581 (54%)
Query: 31 NQTKQLFAQIIKLDLQRDPYIAPK--LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
N Q+ A +KL +P++ L+ S R++ LA +F +I + D +NTLI
Sbjct: 164 NAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLIT 223
Query: 89 ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
++ L ++ +FL M++ G +FT+ +LKA G + F L Q +HAL G+
Sbjct: 224 GYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSR 283
Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
D V N ++D YSK V + LF M E D VS+N +I+ + + + F E
Sbjct: 284 DASVGNQILDFYSKHD--RVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFRE 341
Query: 209 MP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGD 260
M +R + T+L A + + +L + S +++V Y+K
Sbjct: 342 MQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM 401
Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
E A+L+F +P +T V WT +ISGY +KG+ +L+ +M + L+ D T ++L A
Sbjct: 402 FEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461
Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
A L LG ++HA I + N + LVDMYAKCGS+ +A+ VF M ++ VSW
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSW 521
Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
NA++ A +G GE A+G F++M + G PD + +GVL AC+H GF+++G +YF +M
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSP 581
Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
YGI P+ +HY CM+DLLGR+GR EA +L+ MP EP+ I+W ++L ACR H LAE
Sbjct: 582 IYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAE 641
Query: 501 EVLDCLIRL-KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
+ L + K D Y +SNI+AA G+W KV +V+ M++ +K S VEV+++
Sbjct: 642 RAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHK 701
Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
+H FS DQ HP ++I + IN L +++ G+ S+ +
Sbjct: 702 IHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVV 742
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| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 192/561 (34%), Positives = 314/561 (55%)
Query: 34 KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
KQ+ A I++ L+ D + LI S C ++ A K+FN + + ++ + TL+ QN
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328
Query: 94 SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
+L+ +A +F M + G+ D + +L +C + +HA K D +V
Sbjct: 329 ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVT 388
Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG---ELSEARRLFDEMP 210
NSLID Y+KC + + A+K+F D+V +N+MI G + G EL EA +F +M
Sbjct: 389 NSLIDMYAKCDCL--TDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMR 446
Query: 211 ER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGDME 262
R +++ ++L A + L+ ++ F+ + +I + S ++ YS ++
Sbjct: 447 FRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLK 506
Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
++L+FD M K LV W + +GY ++ +EA L+ +++ + +PD+ T +++ A
Sbjct: 507 DSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAG 566
Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
+ LG + H + K +CN + NAL+DMYAKCGS ++A F+ +D+V WN+
Sbjct: 567 NLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNS 626
Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
++ A HG+G+KAL + +M EG P+ TFVGVL AC+HAG ++ G++ F M R +
Sbjct: 627 VISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-F 685
Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
GI P+ EHY CM+ LLGR+GRL +A L++ MP +P AI+W +LL C K VELAE
Sbjct: 686 GIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHA 745
Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
+ I D G++TMLSNI+A+ G W + VR +MK K G S + ++ EVH
Sbjct: 746 AEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHI 805
Query: 563 FSVCDQLHPKSEQIYQMINTL 583
F D+ H K+ QIY++++ L
Sbjct: 806 FLSKDKSHCKANQIYEVLDDL 826
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| TAIR|locus:4515103421 AT4G19191 "AT4G19191" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 192/561 (34%), Positives = 313/561 (55%)
Query: 34 KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
+ + A +IK D ++ + C + A KVF + + D +N ++ Q+
Sbjct: 72 EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 131
Query: 94 SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
+AF +F +M+ + D+ T L+++ + + L++ +HA+ + G + V
Sbjct: 132 GHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA 191
Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSM--GERDIVSWNSMIAGLVKGGELSEARRLFDEM-P 210
N+ I +Y KCG + AK +F ++ G+R +VSWNSM GE +A L+ M
Sbjct: 192 NTWISTYGKCG--DLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLR 249
Query: 211 ERDAVSWNTILDGYAKAGEMNLAFE---LFEKIPH----RNIVSWSTMVWGYSKDGDMEM 263
E +T ++ A + + H ++I + +T + YSK D
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309
Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
A+LLFD M ++T V WT++ISGYAEKG EA L+ M ++G KPD TL+S+++ C +
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369
Query: 324 SGLLGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
G L G + A + Y K N +CNAL+DMY+KCGS+ A +F+ +K +V+W
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429
Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
M+ G A++G +AL LFS+M D + P+ TF+ VL AC H+G ++KG +YF+ M++ Y
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489
Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
I P ++HY CM+DLLGR G+L+EAL L+++M +P+A IWG LL AC+ H V++AE+
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQA 549
Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
+ L L+ Y ++NI+AA G W+ A +R MK+ +K G S ++V+ + H
Sbjct: 550 AESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHS 609
Query: 563 FSVCDQLHPKSEQIYQMINTL 583
F+V + H ++E IY +N L
Sbjct: 610 FTVGEHGHVENEVIYFTLNGL 630
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LS72 | PP261_ARATH | No assigned EC number | 0.6237 | 0.9719 | 0.98 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00021027001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (594 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-108 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-94 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-57 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-48 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-41 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
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Score = 344 bits (885), Expect = e-108
Identities = 189/582 (32%), Positives = 310/582 (53%), Gaps = 12/582 (2%)
Query: 29 NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
+L + +++ A +++ + D + LI+ C + A VF+ + D +N +I
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261
Query: 89 ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
+N + +F M+E V D T ++ AC L + +H + K G+
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
D+ V NSLI Y G G A+K+F M +D VSW +MI+G K G +A +
Sbjct: 322 DVSVCNSLIQMYLSLGSWGE--AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----STMVWGYSKDGD 260
M + D ++ ++L A G++++ +L E + ++S+ + ++ YSK
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
++ A +F +P K ++ WT II+G EA + QM LKP+ TLI+ L+A
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSA 498
Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
CA G L G ++HA + + + + NAL+D+Y +CG ++ A + FN +KD+VSW
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSW 557
Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
N +L G HG+G A+ LF+RM + G PD+ TF+ +LCAC+ +G + +G++YF+SME
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
Y I P ++HY C++DLLGR+G+L EA + MP+ P+ +WG LL ACR H VEL E
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
+ L + G Y +L N++A G W++VA VR M++ G S VEV +V
Sbjct: 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737
Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
H F D+ HP+ ++I ++ + +K G A S+ + E
Sbjct: 738 HAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 302 bits (776), Expect = 5e-94
Identities = 161/468 (34%), Positives = 244/468 (52%), Gaps = 43/468 (9%)
Query: 171 AKKLF---MSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
K ++ S G E D N ++ VK G L +ARRLFDEMPER+ SW TI+ G
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD 201
Query: 227 AGEMNLAFELFEKI--------PHRNIV-------SWS-------------TMVWG---- 254
AG AF LF ++ P +V S T V G
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261
Query: 255 -------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
YSK GD+E A+ +FD MP KT V W +++GYA G ++EA LY +M ++G+
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
D T ++ + LL + HA + + F + ALVD+Y+K G +++A +
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
VF+ M +K+L+SWNA++ G HG+G KA+ +F RM EG P+ TF+ VL AC ++G
Sbjct: 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
++G + F SM ++ I P+ HY CMI+LLGR G L EA +++ P +P +W LL
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALL 501
Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
ACR H +EL + L + NY +L N++ ++G + A V +K+
Sbjct: 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561
Query: 548 PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
+ +EV + H F D+LHP+S +IYQ ++ L K++ G+ A+
Sbjct: 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 4e-57
Identities = 134/466 (28%), Positives = 225/466 (48%), Gaps = 23/466 (4%)
Query: 68 AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
A VF + + D+ +N L+ + +A ++ M GV D +T+P +L+ C G
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199
Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
+ +HA + + G+ D+ V N+LI Y KCG V A+ +F M RD +SWN
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG--DVVSARLVFDRMPRRDCISWN 257
Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
+MI+G + GE E LF M E D ++ +++ G+ L E+ +
Sbjct: 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 244 ----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
++ ++++ Y G A+ +F RM K V WT +ISGY + G+ +A Y
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
ME+ + PD+ T+ S+L+ACA G L +G+K+H + V NAL++MY+KC
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
+D A+ VF+ + +KD++SW +++ GL ++ + +AL F +M P+ T + L
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAAL 496
Query: 420 CACTHAGFIDKGVQYFYSMERD----YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
AC G + G + + R G LP ++DL R GR+ A Q
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAWN--QFNS 549
Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
E + + W LL H +A E+ + ++ G +P T +S
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEVTFIS 594
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (457), Expect = 5e-48
Identities = 119/431 (27%), Positives = 200/431 (46%), Gaps = 23/431 (5%)
Query: 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
H N+ +RA + QA ++ MQE V D Y L + C K + +
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSR 111
Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
+ + N+++ + + G + A +F M ERD+ SWN ++ G K G
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVH--AWYVFGKMPERDLFSWNVLVGGYAKAGYFD 169
Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW-------- 248
EA L+ M D ++ +L ++ E+ H ++V +
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV-----HAHVVRFGFELDVDV 224
Query: 249 -STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
+ ++ Y K GD+ A+L+FDRMP + + W +ISGY E G E L+ M E +
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
PD T+ S+++AC G LG ++H + K F + +VCN+L+ MY GS A
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
VF+ M KD VSW AM+ G +G +KAL ++ M+ + PD+ T VL AC G
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404
Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
+D GV+ + + G++ V +I++ + + +AL + ++P E + I W +++
Sbjct: 405 LDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSII 462
Query: 488 -GACRKHNAVE 497
G + E
Sbjct: 463 AGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 5e-41
Identities = 109/389 (28%), Positives = 195/389 (50%), Gaps = 14/389 (3%)
Query: 34 KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
K ++ + + D Y+ +++ C + A ++F+++ + ++ + T+I V
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202
Query: 94 SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
+AF +F +M E G + T+ +L+A G Q +H + K G GD FV
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
+LID YSKCG + A+ +F M E+ V+WNSM+AG G EA L+ EM +
Sbjct: 263 CALIDMYSKCGDI--EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAK 265
D +++ ++ +++ + A + + +IV+ + +V YSK G ME A+
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
+FDRMP K L+ W +I+GY G +A ++++M G+ P+ T +++L+AC SG
Sbjct: 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 326 LLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-WNAM 383
L G ++ S+++ +R K ++++ + G LD A ++ K V+ W A+
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500
Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
L +H E LG + K G GP+K
Sbjct: 501 LTACRIHKNLE--LGRLAAEKLYGMGPEK 527
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 2e-33
Identities = 96/352 (27%), Positives = 165/352 (46%), Gaps = 15/352 (4%)
Query: 187 NSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
NS + L G+L +A +L + M E R V + + + E A E ++ R +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYV-ALFRLCEWKRAVEEGSRVCSRAL 113
Query: 246 VSWST--------MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
S + M+ + + G++ A +F +MP + L W +++ GYA+ G EA
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
LY +M AG++PD T +L C L G +VHA + ++ F+ + +V NAL+ MY
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
KCG + +A VF+ M ++D +SWNAM+ G +G+ + L LF M++ PD T
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 418 VLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
V+ AC G G + + Y ++ + + V +I + G EA ++ M
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAV--DVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
+ +A+ W ++ K+ + A E L+ P T+ S + A
Sbjct: 352 K-DAVSWTAMISGYEKNGLPDKALETYA-LMEQDNVSPDEITIASVLSACAC 401
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 75/330 (22%), Positives = 149/330 (45%), Gaps = 24/330 (7%)
Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLF 268
D + T++ AK+G+++ FE+F ++ + N+ ++ ++ G ++ G + A +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 269 DRMPAKTLVPWTII----ISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACA 322
M +K + P ++ IS + G A + +M E + PD T+ +++ ACA
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
+G + +V+ I++Y K V V+ ++ G D A+S+++ M KK +
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 383 MLYGL---AMH-GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
L A H G +KA + + +G ++ ++ AC++A K ++ + +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNA 495
+ + P V +I L +L +AL ++ M + PN I + LL A + +
Sbjct: 711 -KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 496 VELAEEVLDCLIRLK--GSDPGNYTMLSNI 523
++ LD L + K G P N M I
Sbjct: 770 ADVG---LDLLSQAKEDGIKP-NLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 7e-13
Identities = 71/349 (20%), Positives = 147/349 (42%), Gaps = 29/349 (8%)
Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI-----LDGYAKAGEMNLA 233
G+R + L++ G + + L ++M +R + + I K + A
Sbjct: 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEA 425
Query: 234 FELFEKIPHRNIVSWSTM---VWGYSKD--GDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
F F K+ +S M V S+D G + + +L+ + +T +IS A+
Sbjct: 426 FR-FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484
Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
G ++ +M AG++ + T +++ CA +G + + + K + V
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 349 CNALVDMYAKCGSLDNAMSVFNGMT------KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
NAL+ + G++D A V M D ++ A++ A GQ ++A ++
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 403 MKDEGF--GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
+ + P+ YT + +C+ G D + + M++ G+ P + ++D+ G
Sbjct: 605 IHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGH 661
Query: 461 SGRLKEALRLVQSMPVE---PNAIIWGTLLGACRK----HNAVELAEEV 502
+G L +A ++Q + + + +L+GAC A+EL E++
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 94/417 (22%), Positives = 165/417 (39%), Gaps = 84/417 (20%)
Query: 75 IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC--NGK---- 128
I++P + +N L+ C + A RV +QE G+ D Y L+ C +GK
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 129 -NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV-------GVSLAKKLFMSMGE 180
FH +M++A G ++ +LID ++ G V G+ +K + +
Sbjct: 492 FEVFH--EMVNA-----GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-----K 539
Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPER------DAVSWNTILDGYAKAGEMNLAF 234
D V +N++I+ + G + A + EM D ++ ++ A AG+++ A
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 235 ELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS------ 284
E+++ I NI ++ V S+ GD + A ++D M K + P + S
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
G+A G +A + + G+K + S++ AC
Sbjct: 660 GHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGAC----------------------- 694
Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL---VS-WNAMLYGLAMHGQGEKALGLF 400
NA + A+ ++ + L VS NA++ L Q KAL +
Sbjct: 695 ----SNA--------KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742
Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
S MK G P+ T+ +L A D G+ S ++ GI P + C+ L
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLD-LLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 7e-11
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAK 226
D+V++N++I G K G++ EA +LF+EM +R + +++ ++DG K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
PDV YNTLI + +A ++F +M+++G+ + +TY L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
D+V++N ++ G G+ E+AL LF+ MK G P+ YT+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 7e-08
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSK 257
D V++NT++DGY K G++ A +LF ++ R N+ ++S ++ G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 5e-07
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
+V + +I GY +KG +EA +L+++M++ G+KP+ T ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 67/334 (20%), Positives = 134/334 (40%), Gaps = 64/334 (19%)
Query: 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDM--QEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
PD ++N LI AC Q+ +AF V +M + + D+ T L+KAC
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC---------- 589
Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS----WNSMIA 191
+ G V AK+++ + E +I + +
Sbjct: 590 -------------------------ANAGQVD--RAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 192 GLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-- 245
+ G+ A ++D+M ++ D V ++ ++D AG+++ AFE+ + + I
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 246 --VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI-----IISGYAEKGMAKEAARL 298
VS+S+++ S + + A L++ + + L P T+ +I+ E +A +
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEV 741
Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM--- 355
+M+ GL P+ T +L A +G+ + + + K N +C + +
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801
Query: 356 -YAKCGSLDNAMSVFNG---MTKKDLVSWNAMLY 385
+ K +L + F+ + SW M+Y
Sbjct: 802 RFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 5e-06
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP----WTIIISGYA 287
++V+++T++ GY K G +E A LF+ M + + P ++I+I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERD 213
V++NS+I+G K G+L EA LF EM E+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
V++N ++ GL G+ E+AL LF MK+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
V++N+++ G G+ E+AL LF MK++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
+ +I G + G +EA L+ +M+E G++PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
+ D+V++N++I GL + G + EA L DEM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERD 213
V++N++I GL K G + EA LF EM ER
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEK 239
+ D V++NT++DG +AG ++ A EL ++
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKK----DLVSWNAMLYGLA 388
+ N L+D Y K G ++ A+ +FN M K+ ++ +++ ++ GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
V + +ISGY + G +EA L+ +M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
V++N+++ GY KAG++ A ELF+++ + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRM 271
V++++++ GY K G +E A LF M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
V++NT++DG KAG + A ELF+++ R I
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
+ ++ A+ G A + ++M+ +GLKP
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.21 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.86 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.83 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.57 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.44 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.26 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.26 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.21 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.9 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.9 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.86 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.85 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.77 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.69 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.55 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.48 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.38 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.35 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.33 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.31 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.3 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.19 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.17 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.16 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.15 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.09 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.93 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.6 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.41 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.36 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.06 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.0 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.0 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.84 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.78 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.77 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.73 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.47 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.41 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.27 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.25 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.18 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.88 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.84 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.82 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.67 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.65 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.54 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.36 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.33 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.27 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.23 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.16 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.07 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.89 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.32 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.31 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.04 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.02 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.75 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.23 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.21 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.12 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.88 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.53 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.44 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.34 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.3 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.26 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.09 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.08 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.96 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.77 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.51 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 90.43 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.25 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.24 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.85 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.55 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.52 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.32 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.31 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.23 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.2 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.04 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.04 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.85 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.44 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.4 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.82 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.59 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 87.52 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.35 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.92 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.8 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.71 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.7 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.63 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 86.45 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 86.13 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.03 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.99 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.87 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 85.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.53 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.31 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 84.74 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.67 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.55 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.46 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 83.04 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.01 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 81.7 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.96 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.78 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.43 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.31 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.29 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-84 Score=699.11 Aligned_cols=582 Identities=32% Similarity=0.567 Sum_probs=557.4
Q ss_pred CCCcchhhHHHHHHHhhc---CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHH
Q 037404 10 WFSKRRLLEEKLQNLHKC---KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86 (605)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 86 (605)
++.|+.+ ++..++..| +++..+.++|..+.+.|+.||+.++|.|+.+|+++|++++|.++|++|++||..+||++
T Consensus 182 g~~Pd~~--t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~l 259 (857)
T PLN03077 182 GVRPDVY--TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259 (857)
T ss_pred CCCCChh--HHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHH
Confidence 3445555 555555554 34455677777777777778888889999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 037404 87 IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166 (605)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (605)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|+++|
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-- 337 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG-- 337 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC-
Q 037404 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP- 241 (605)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 241 (605)
+++.|.++|++|..+|..+||.+|.+|++.|++++|+++|++| ..||..||+.++.+|++.|+++.|.++++.+.
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 67999999999999999999999999998876
Q ss_pred ---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037404 242 ---HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318 (605)
Q Consensus 242 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 318 (605)
.++..+|+.|+++|++.|++++|.++|++|.+++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHH
Q 037404 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 478 (605)
+|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.++.|+.|+..+|++++.+|++.|++++|.+++++|+++|
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999668999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (605)
|..+|++|+.+|..+|+.+.++...+++.+++|+++..|..++++|...|+|++|.++.+.|.+.|++++||++|+++.+
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCCCCCc
Q 037404 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597 (605)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~ 597 (605)
.++.|.+++..||..++|+.+|+.+..+|++.||.|+++
T Consensus 736 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred EEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 999999999999999999999999999999999999987
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-75 Score=615.70 Aligned_cols=519 Identities=31% Similarity=0.520 Sum_probs=506.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhH
Q 037404 77 DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155 (605)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (605)
..+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577799999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChH
Q 037404 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 156 l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
|+.+|++.| +++.|.++|++|+++|..+||.+|.+|++.|++++|+++|++| ..||..+|+.++.+|+..|..+
T Consensus 164 Li~~y~k~g--~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCG--MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCC--CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999 9999999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred HHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037404 232 LAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307 (605)
Q Consensus 232 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 307 (605)
.+.+++..+. .+|..+|++|+++|++.|++++|.++|+.|..++..+||.++.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976654 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHH
Q 037404 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387 (605)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 387 (605)
.||..||+.++.+|++.|+++.|.+++..+.+.|+.++..++++|+++|+++|++++|.++|++|.++|..+|++||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (605)
++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.++.|+.|+..+|+.++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 468 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
.+++++|+..|+..+|++++.+|...|+++.|..+++++.+..|++...|..++.+|.+.|++++|.++++.|.+.|+.+
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCCCCCc
Q 037404 548 PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597 (605)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~ 597 (605)
.||++|+++.+..+.|.+++..||..++|+..++.+..+|++.||.|+++
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999987
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-71 Score=598.23 Aligned_cols=509 Identities=26% Similarity=0.444 Sum_probs=449.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 107 (605)
+.++.+.+++..+.+.+..+++.++|.++..|++.|+++.|.++|++|++||+.+||++|.+|++.|++++|+++|++|.
T Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~ 179 (857)
T PLN03077 100 RAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444444444444445555556668889999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHH
Q 037404 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187 (605)
Q Consensus 108 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~ 187 (605)
..|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|+++| +++.|.++|++|+++|..+||
T Consensus 180 ~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG--DVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC--CHHHHHHHHhcCCCCCcchhH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC----CCChhHHHHHHHHHHhcC
Q 037404 188 SMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDG 259 (605)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~ 259 (605)
++|.+|++.|++++|+++|.+| ..||..||+.++.+|++.|+.+.|.+++..+. .||..+|+.|+.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 9999999999999999999999 68999999999999999999999999998775 489999999999999999
Q ss_pred CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (605)
++++|.++|++|..++..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
.|+.++..+++.|+++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCC------------------------------chHHHHHHHHHhhhcCCHHHHHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILP------------------------------QVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
.+|++.|..+.+.+++..+.+ .|+.+ |..+|+++|.+|++.|+.++|.+
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH
Confidence 998888888888888887776 46644 55556666666666666666666
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 470 LVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 470 ~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+|++| ++.||..||+.++.+|.+.|.+++|.++|+.|.+.. .++..+|..++++|.+.|++++|.+++++|
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 66666 456666666666666666666666666666666432 223456666777777777777777766666
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=526.08 Aligned_cols=497 Identities=18% Similarity=0.282 Sum_probs=446.3
Q ss_pred CCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcc-----cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHH
Q 037404 45 LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH-----LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYP 119 (605)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 119 (605)
..++...|..++..+++.|++++|.++|++|++++.. +++.++.+|.+.|..++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4567788889999999999999999999999865444 455677788999999999999998864 8999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccC----CCCeehHHHHHHHHHh
Q 037404 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG----ERDIVSWNSMIAGLVK 195 (605)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 195 (605)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.| +.+.|.++|++|. .||..+|+.+|.+|++
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--KVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999987 4788999999999999
Q ss_pred CCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC------CCChhHHHHHHHHHHhcCCHHHHH
Q 037404 196 GGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP------HRNIVSWSTMVWGYSKDGDMEMAK 265 (605)
Q Consensus 196 ~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~ 265 (605)
.|++++|+++|++| ..||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999 57899999999999999999999999999884 488899999999999999999999
Q ss_pred HHHhhCCCCCc----ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 037404 266 LLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341 (605)
Q Consensus 266 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (605)
++|+.|.+.+. .+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999986654 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037404 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417 (605)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 417 (605)
+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999985 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----c-------------------CCHHHHHHHHHhC
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----S-------------------GRLKEALRLVQSM 474 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 474 (605)
++.+|++.|++++|.+++..|.+ .|+.||..+|++++..|.+ + +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99999999999999999999998 5999999999999866432 2 2246799999999
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q 037404 475 ---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550 (605)
Q Consensus 475 ---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 550 (605)
++.||..+|+.++.+++..+..+.+..+++.+... .+.+..+|..+++.+.+. .++|..++++|.+.|+.|+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 78999999999998888888999988888876643 356677899999987322 368999999999999987764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-63 Score=520.22 Aligned_cols=487 Identities=19% Similarity=0.277 Sum_probs=455.2
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCC-CCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCch
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (605)
.+...+.++|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|..|+..+|+.+|.+|++.|+++
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHH
Confidence 555666677999999999999999996 5778888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhc
Q 037404 98 QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177 (605)
Q Consensus 98 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~ 177 (605)
.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.| ++++|.++|++
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--~~eeAl~lf~~ 532 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--CHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCC----CCeehHHHHHHHHHhCCChhHHHHHHhhc------CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCC----C
Q 037404 178 MGE----RDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----R 243 (605)
Q Consensus 178 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~ 243 (605)
|.+ ||..+|+.+|.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|+.|.+ +
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 963 89999999999999999999999999999 368999999999999999999999999999874 6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK----TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
+..+|+.++.+|++.|++++|.++|++|.+. +..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7799999999999999999999999999864 555699999999999999999999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999986 6899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcc----c-------------------CCHHHHHHHHHHhHHhhCCCCchHHHH
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTH----A-------------------GFIDKGVQYFYSMERDYGILPQVEHYG 452 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ 452 (605)
|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+ .|+.||..+|+
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~ 851 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHH
Confidence 99999999999999999999999876532 1 124679999999999 59999999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 453 CMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
.++.++++.+..+.+..+++.| +..|+..+|++++.++.+. .++|..++++|.+..
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9999999999999999999988 4567789999999998432 468999999999974
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=491.48 Aligned_cols=427 Identities=26% Similarity=0.429 Sum_probs=407.8
Q ss_pred hhhHHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCC
Q 037404 15 RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94 (605)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (605)
..+..++..+.+.++++.+.++|..|.+.|+.||+.+++.|++.|+++|++++|.++|++|++||..+||++|.+|++.|
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 33455677777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHH
Q 037404 95 LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~ 174 (605)
++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.+++..+.+.|+.||..+++.|+++|+++| ++++|.++
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--~~~~A~~v 281 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG--DIEDARCV 281 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC--CHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC----CCChh
Q 037404 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIV 246 (605)
Q Consensus 175 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~ 246 (605)
|++|.++|+.+||.+|.+|++.|++++|+++|++| ..||..||+.++.+|++.|+++.|.++++.|. .+|..
T Consensus 282 f~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999 68999999999999999999999999998876 57889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
+|++|+++|++.|++++|.++|++|.+++..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 327 LGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 327 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++++.+|...|+++.|..+++++.
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 9999999999975 6999999999999999999999999999999987 7899999999999999999999999999987
Q ss_pred HCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC
Q 037404 405 DEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446 (605)
Q Consensus 405 ~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (605)
+ +.|+ ..+|..++..|++.|++++|.++++.|.+ .|+..
T Consensus 522 ~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 522 G--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred C--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 5 4564 67899999999999999999999999998 47754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=306.16 Aligned_cols=515 Identities=11% Similarity=0.066 Sum_probs=372.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCC
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSL 95 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~ 95 (605)
.++..+...|+++++...+..+.+.. +.++..+..+...+.+.|++++|.++|+++.+ .+...|..+...+...|+
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 56677778899999988888887665 45677788888888888999999999887652 345566777778888888
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHH
Q 037404 96 NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175 (605)
Q Consensus 96 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~ 175 (605)
+++|.+.|+.+.+.... +......++..+...|+++.|..+++.+.+.. +++..++..+...|...| +.+.|.+.|
T Consensus 413 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~ 488 (899)
T TIGR02917 413 PSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKG--DLAKAREAF 488 (899)
T ss_pred hHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 88888888888775432 23344556666778888888888888877643 445667778888888888 888888888
Q ss_pred hccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC--C-CCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChh
Q 037404 176 MSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP--E-RDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIV 246 (605)
Q Consensus 176 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 246 (605)
++..+ .+...+..+...+...|++++|.+.|+++. . .+..++..+...+...|+.++|..+++++.+ .+..
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 568 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 77643 244566677777888888888888888772 2 2455677777777778888888888777643 3445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
.+..++..|.+.|++++|..+++.+.+. +...|..++..+...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 6677777788888888888887776543 33347777777888888888888888777653 3345566677777777
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 400 (605)
.|++++|..+++.+.+.. +.+...+..++..+...|++++|..+++.+. +.+...+..+...+...|++++|...|
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788888888887777654 3356677777777777788888877777765 235566677777777777888888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEP 478 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p 478 (605)
+++... .|+..++..+..++...|++++|.+.++.+.. ..+.+...+..++..|...|++++|.+.|+++ ..++
T Consensus 727 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 727 RKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 777764 34446666677777777777777777777766 34556667777777777777777777777776 2234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
+...++.++..+...|+ .+|+..++++.+..|+++..+..++.++...|++++|.++++++.+.++
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56667777777777777 6677777777777777777777777777777777777777777777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=301.97 Aligned_cols=514 Identities=14% Similarity=0.044 Sum_probs=386.8
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCC
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSL 95 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 95 (605)
.++..+...|+.+.+...+..+++.. +.++..+..+...+.+.|++++|...++.+. +.+...+..+...+.+.|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Confidence 45566677788888888888887764 4556667777788888888888888887765 2345567777788888888
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHH
Q 037404 96 NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175 (605)
Q Consensus 96 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~ 175 (605)
+++|.++|+++.+.. +.+...+..+...+...|+++.|...++.+.+.... .......++..+.+.| +.+.|..++
T Consensus 379 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~ 454 (899)
T TIGR02917 379 FEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG--QFDKALAAA 454 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC--CHHHHHHHH
Confidence 888888888887653 224455666666777888888888888888775532 3345566777888888 888888888
Q ss_pred hccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC--CC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChh
Q 037404 176 MSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP--ER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIV 246 (605)
Q Consensus 176 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 246 (605)
+++.. .+...|..+...+...|++++|...|+++. .| +...+..+...+...|++++|.+.++.+.+ .+..
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 534 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR 534 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 87754 355678888888888888888888888772 23 344566777778888888888888877653 3556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKT---LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
++..+...+.+.|+.++|...++++...+ ...+..++..+...|++++|..+++.+.+.. +.+...+..+..++..
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 77788888888888888888888775433 3346677788888888888888888887653 4566777888888888
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 400 (605)
.|+++.|...++.+.+.. +.+...+..+..++...|++++|...|+++. +.+..++..++..+...|++++|..++
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888887654 3356667778888888888888888887765 335677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEP 478 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p 478 (605)
+.+.+.+ +++...+..+...+...|++++|...++.+.. ..|+..++..++..+.+.|++++|.+.++++ ..+.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8887764 44566677777788888888888888888866 2355566777888888888888888888777 3344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+...+..++..|...|++++|...|+++++..|+++.++..+++++...|+ ++|+++++++.+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 566777788888888888888888888888888888888888888888888 77888888887754
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-24 Score=240.36 Aligned_cols=519 Identities=13% Similarity=0.048 Sum_probs=314.6
Q ss_pred CCcchhhHHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC--CCccc-H----
Q 037404 11 FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD--PDVHL-Y---- 83 (605)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~---- 83 (605)
..|.+.+..-++.-.+.++.+.|.+.+..+.... +.|+.++..++..+.+.|+.++|.+.+++..+ |+... +
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3455555566777778899999999999888764 56788899999999999999999999998863 33222 1
Q ss_pred ------------HHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCc
Q 037404 84 ------------NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150 (605)
Q Consensus 84 ------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (605)
..+...+.+.|++++|+..|+.+.+.+ +|+.. ............|+.++|...++.+.+.. +.+.
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~ 181 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT 181 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence 223346788899999999999998753 33322 11112222335689999999999999875 3356
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHhccCCCCe-----------------------ehHH--------------------
Q 037404 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI-----------------------VSWN-------------------- 187 (605)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~-----------------------~~~~-------------------- 187 (605)
..+..+...+...| +.++|...++++..... ..+.
T Consensus 182 ~~~~~LA~ll~~~g--~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 182 GLRNTLALLLFSSG--RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred HHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 67888889998889 99999988887632110 0000
Q ss_pred --------------HHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC--CCh---
Q 037404 188 --------------SMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH--RNI--- 245 (605)
Q Consensus 188 --------------~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~--- 245 (605)
.....+...|++++|+..|++. ..| +...+..+..++.+.|++++|...|++..+ |+.
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 1123456678888888888877 334 556777788888888888888888877654 221
Q ss_pred hHH------------HHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037404 246 VSW------------STMVWGYSKDGDMEMAKLLFDRMPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310 (605)
Q Consensus 246 ~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 310 (605)
..| ......+.+.|++++|+..|+++...++ ..+..+...+...|++++|++.|++..+.. +.+
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~ 418 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGN 418 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 111 1224456778888888888888765433 236667788888888888888888887743 222
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC--------CCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhH
Q 037404 311 DGTLISILAACAESGLLGLGMKVHASINKYRF--------KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVS 379 (605)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 379 (605)
...+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|++.|++.. +.++..
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 333333333332 2233333333332211100 0001112223333444455555555444433 112333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHH-----------------------------------------
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVG----------------------------------------- 417 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~----------------------------------------- 417 (605)
+..+...|.+.|++++|...++++.+. .| +...+..
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 444444444455555555555444432 12 1111111
Q ss_pred ---HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 037404 418 ---VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRK 492 (605)
Q Consensus 418 ---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 492 (605)
....+...|+.++|..+++ ..+.+...+..+...+.+.|++++|++.|+++ ...| +...+..++..+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1223334444444444433 12334445556666677777777777777666 3333 35566666677777
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|++++|++.++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 7777777777777766667766666777777777777777777777766543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-24 Score=235.29 Aligned_cols=510 Identities=13% Similarity=0.030 Sum_probs=374.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHH-HhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCC
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS-LALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNS 94 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 94 (605)
..+.++...|+.++|.+.++.+++.+ +++.......... ....|+.++|++.|+++.+ .+...+..+...+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 55668888999999999999998754 3443322222222 2345899999999998873 35557778888999999
Q ss_pred CchHHHHHHHHHHhCCC------------------C--------------CCcccH-------------------H--HH
Q 037404 95 LNAQAFRVFLDMQEKGV------------------F--------------TDNFTY-------------------P--FL 121 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~-------------------~--~l 121 (605)
+.++|+..++++.+... . |+...+ . ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998865321 0 110000 0 01
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC--CCe---ehHH---------
Q 037404 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDI---VSWN--------- 187 (605)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~---~~~~--------- 187 (605)
...+...|++++|...++..++.. +.+..++..|...|.+.| +.++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g--~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQG--DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 123456688888888888887754 235667778888888888 88888888877654 221 1121
Q ss_pred ---HHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhc
Q 037404 188 ---SMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKD 258 (605)
Q Consensus 188 ---~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 258 (605)
.....+.+.|++++|+..|++. ..| +...+..+...+...|++++|++.|+++.+ .+...+..+...|. .
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 1234566788888888888888 233 444566677788888888888888887764 23455666666664 4
Q ss_pred CCHHHHHHHHhhCCCCC------------cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 259 GDMEMAKLLFDRMPAKT------------LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 259 ~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
++.++|..+++.+.... ...+..+...+...|++++|+..|++.++.. +-+...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 56788888887665321 1124556677888999999999999998853 2245667778889999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----h---------hHHHHHHHHHHHcCCh
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD----L---------VSWNAMLYGLAMHGQG 393 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~ 393 (605)
+++|...++.+.+... .+...+..+...+...++.++|...++.+.... . ..+..+...+...|++
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999887543 345555556666788899999999999876321 1 1223456678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHh
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (605)
++|+.+++. .+.+...+..+...+.+.|++++|+..|+++.+ ..+.+...+..++..|...|++++|++.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 244556777888899999999999999999988 3455788999999999999999999999998
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc------hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 474 M-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG------NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 474 ~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
. ...|+ ...+..+..++...|++++|.++++++....|+++. .+..++.++...|+.++|+..|++...
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 34444 556777888899999999999999999998765543 566779999999999999999999975
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-21 Score=202.21 Aligned_cols=503 Identities=12% Similarity=0.064 Sum_probs=318.0
Q ss_pred hhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC--CCcccHHHHHHHHHhCCCchHHHHH
Q 037404 25 HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD--PDVHLYNTLIRACVQNSLNAQAFRV 102 (605)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (605)
...|+.++|...|+..++.. |-++.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 34499999999999999876 45588889999999999999999999998873 3223333333222 777788888
Q ss_pred HHHHHhCCCCCCcccHHHH----------------------------------------HHHhhccCCHHHHHHHHHHHH
Q 037404 103 FLDMQEKGVFTDNFTYPFL----------------------------------------LKACNGKNWFHLVQMIHALIY 142 (605)
Q Consensus 103 ~~~m~~~~~~p~~~~~~~l----------------------------------------l~~~~~~~~~~~a~~~~~~~~ 142 (605)
|+++...... +...+..+ .+.|...+++++|..++..+.
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8888765321 22222222 333444555555555555555
Q ss_pred HhCCCCCcchhhHHHHHHHh-cCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcC-----CCCcch
Q 037404 143 KCGYFGDIFVPNSLIDSYSK-CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-----ERDAVS 216 (605)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~-~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~ 216 (605)
+.+.. +......|..+|.. .+ + +.+..+++.....+...+..++..+.+.|+.++|..++.++. .|+..+
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~--~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQL--D-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhC--H-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 54421 22333444444444 23 3 444444443223345555566666666666666666666651 111111
Q ss_pred HH------------------------------HHHHHHHcCCChHHHHHHHHhCCC------------------------
Q 037404 217 WN------------------------------TILDGYAKAGEMNLAFELFEKIPH------------------------ 242 (605)
Q Consensus 217 ~~------------------------------~ll~~~~~~~~~~~a~~~~~~~~~------------------------ 242 (605)
+. .++..+.+.++++.++++...-..
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence 11 113334444555544444221110
Q ss_pred --------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--Cc---c-cHHHHHHHHHhCCC---hHHHHHH-------
Q 037404 243 --------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK--TL---V-PWTIIISGYAEKGM---AKEAARL------- 298 (605)
Q Consensus 243 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~l~~~~~~~~~---~~~a~~~------- 298 (605)
.+....-.+.-...+.|+.++|.++|+..... +. . .-.-++..|.+.+. ..++..+
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 01111112222344566677777777665431 11 1 12244455554443 2222222
Q ss_pred ---------------HHHHHHc-CC-CC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 299 ---------------YDQMEEA-GL-KP--DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 299 ---------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHC
Confidence 1111111 11 22 34455555555554 77778888777766554 3433333445555689
Q ss_pred CChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
|++++|...|+++. +++...+..+...+.+.|++++|...+++..+.+ |+. ..+..+.......|++++|...++
T Consensus 523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998765 3444556677788889999999999999988754 433 333344445556799999999999
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
+..+ ..|+...+..+..++.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++.+|+++
T Consensus 601 ~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 601 RSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9976 3567888999999999999999999999988 44554 56788888899999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++..++.++...|++++|+..+++..+..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-23 Score=191.32 Aligned_cols=438 Identities=16% Similarity=0.152 Sum_probs=349.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Q 037404 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162 (605)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (605)
...|..-..+.|++++|.+.-...-+.+ +.+......+-..+....+++.....-...++.. ..-..+|+.+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3456666778889999888766554442 2233333333334555555555544444444432 2245688889999999
Q ss_pred cCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcCC--CCcchHH-HHHHHHHcCCChHHHHHH
Q 037404 163 CGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMPE--RDAVSWN-TILDGYAKAGEMNLAFEL 236 (605)
Q Consensus 163 ~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~ll~~~~~~~~~~~a~~~ 236 (605)
.| ++++|..+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ |+..... .+....-..|++++|...
T Consensus 129 rg--~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RG--QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hc--hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99 99999999988765 3556899999999999999999999988844 4433322 334455568999999998
Q ss_pred HHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037404 237 FEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310 (605)
Q Consensus 237 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 310 (605)
|-+..+ |. ...|+.|...+-..|+...|+..|++..+-++. .|-.|...|...+.+++|+..|.+.... .|+
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 877664 33 367999999999999999999999998765443 3888999999999999999999988874 555
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 311 -DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 311 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
...+..+...|...|+++.|+..|++..+.... -+..|+.|..++-..|++.+|...|++.. .....+.+.+...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 466778888899999999999999999886532 46789999999999999999999999876 4456788899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 464 (605)
|...|.+++|..+|....+ +.|.. ..++.|...|-+.|++++|+..|+++.+ +.|+ ...|+.+...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999887 46654 5688999999999999999999999964 6776 56899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 465 KEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.|.+.+.++ .+.|. ....+.|...|...|+..+|+..|+++++++|+.|.++..++.++---.+|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999988 66776 55889999999999999999999999999999999999999988766666655
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-20 Score=199.05 Aligned_cols=508 Identities=10% Similarity=0.033 Sum_probs=372.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHH--------HhccCChhHHHHHhcccCCCC--cccHHHH-H
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS--------LALCRQMGLAIKVFNDIQDPD--VHLYNTL-I 87 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-l 87 (605)
.+...+...++.+.+..+++++++.. +.+..++..+... |.+.+....+++ .....|+ ..+.... .
T Consensus 113 ~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 113 RLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHH
Confidence 34444566688888889999988875 4556666666666 776666666666 2223343 4333444 7
Q ss_pred HHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc-cCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 037404 88 RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166 (605)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (605)
+.|.+.|++++|+..+.++.+.++. +..-...+-.++.. .++ +.+..+++. .+..+..++..+.+.|.+.|
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G-- 261 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRG-- 261 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCC--
Confidence 8999999999999999999998543 34445556566766 355 777777442 33467888999999999999
Q ss_pred ChHHHHHHHhccCC-----CCeeh------------------------------HHHHHHHHHhCCChhHHHHHHhhcCC
Q 037404 167 GVSLAKKLFMSMGE-----RDIVS------------------------------WNSMIAGLVKGGELSEARRLFDEMPE 211 (605)
Q Consensus 167 ~~~~a~~~~~~~~~-----~~~~~------------------------------~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (605)
+.+.|.+++++++. ++..+ .-.++..+.+.++++.+.++...-..
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 99999999999864 11111 11235667777888777766432200
Q ss_pred -------------------------------C-CcchHHHHHHHHHcCCChHHHHHHHHhCCC--C----ChhHHHHHHH
Q 037404 212 -------------------------------R-DAVSWNTILDGYAKAGEMNLAFELFEKIPH--R----NIVSWSTMVW 253 (605)
Q Consensus 212 -------------------------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~ 253 (605)
| +......+.-...+.|+.++|..+|+.... + +......++.
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 1 111222223334568899999999988765 2 2234557788
Q ss_pred HHHhcCC---HHHHHHHHh-------------------------hCCCC-----CcccHHHHHHHHHhCCChHHHHHHHH
Q 037404 254 GYSKDGD---MEMAKLLFD-------------------------RMPAK-----TLVPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 254 ~~~~~~~---~~~a~~~~~-------------------------~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
.|.+.+. ..++..+-. ..... +...|..+..++.. +++++|+..+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 8887776 333333311 11111 22336777777776 88999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHH
Q 037404 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380 (605)
Q Consensus 301 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 380 (605)
+.... .|+......+...+...|+++.|...++.+... +|+...+..+..++.+.|+.++|...++.....++...
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 88775 467655445555667899999999999987654 33444566778889999999999999988775443333
Q ss_pred H---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 381 N---AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 381 ~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
. .+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|+..++++.. ..+.+...++.+...
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3 3333444569999999999999984 67788899999999999999999999999987 345567788999999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|++..+....+++..+..+++.|.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999988 4445 467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 037404 536 VRLQMKKTRAQ 546 (605)
Q Consensus 536 ~~~~~~~~~~~ 546 (605)
-+++....++.
T Consensus 733 ~~~r~~~~~~~ 743 (987)
T PRK09782 733 EVGRRWTFSFD 743 (987)
T ss_pred HHHHHhhcCcc
Confidence 99988876543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-22 Score=185.30 Aligned_cols=418 Identities=13% Similarity=0.145 Sum_probs=333.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhC
Q 037404 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKG 196 (605)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 196 (605)
.|..-.-+.|++.+|++.....-.... .+....-.+-..+.... +.+....--..-.. .-..+|..+...+-..
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~--r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGS--RLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhccc--chhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 333445577888888887665543321 11122222223343333 44433222222111 2345899999999999
Q ss_pred CChhHHHHHHhhcC--CC-CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhh
Q 037404 197 GELSEARRLFDEMP--ER-DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV---SWSTMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 197 g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 270 (605)
|++++|+..++.++ +| ....|..+..++...|+.+.|...|.+..+-|+. ..+.+....-..|++.+|...+.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 99999999999993 44 4668999999999999999999999888764443 334566667778999999998887
Q ss_pred CCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 271 MPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 271 ~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
..+..+ ..|+.|...+..+|+...|+..|++... +.|+ ...|..+...|...+.++.|...|..+.... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 654332 3499999999999999999999999987 4565 4678888889999999999999998887654 2245
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMTK--K-DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCAC 422 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 422 (605)
.++..+.-.|-.+|.++.|+..|++..+ | -+..|+.|..++-..|+..+|...+.+.... .|+ ..+.+.|...|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 6677888889999999999999998773 3 4579999999999999999999999998874 554 46889999999
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 499 (605)
...|.+++|..+|....+ +.|. ...++.|...|..+|++++|+..+++. .+.|+ ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999999976 3444 567899999999999999999999998 78888 55999999999999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 548 (605)
.+.+.+++..+|.-.+++..|+.+|...|+..+|+.-|+...+..++.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 9999999999999999999999999999999999999999999766533
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-19 Score=188.57 Aligned_cols=413 Identities=11% Similarity=-0.021 Sum_probs=271.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC---CeehHHHHHHHHHhCC
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---DIVSWNSMIAGLVKGG 197 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 197 (605)
....+.+.|+++.|...|+..++. .|+...|..+..+|.+.| +++.|.+.++...+. +...|..+..++...|
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~--~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALG--DWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 334455666666666666666553 344555666666666666 666666666655432 3345666666777777
Q ss_pred ChhHHHHHHhhcCC--C-CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037404 198 ELSEARRLFDEMPE--R-DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274 (605)
Q Consensus 198 ~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 274 (605)
++++|+..|..... + +......++..+........+...++.- ..+...+..+...+ ..........-+....+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhhhccccc
Confidence 77777666654411 1 1111111111111111112223333221 12222222222222 111111111111111111
Q ss_pred Ccc---cHHHHHHHH---HhCCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 275 TLV---PWTIIISGY---AEKGMAKEAARLYDQMEEAG-LKPD-DGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 275 ~~~---~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
+.. .+..+...+ ...+++++|+..|++..+.+ ..|+ ...+..+...+...|++++|...++...+... ...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcH
Confidence 111 122222111 23478899999999998764 2343 35566777778889999999999999887642 345
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
..|..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 678888899999999999999998765 4467889999999999999999999999998853 334567778888899
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcC
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA-I-------IWGTLLGACRKHN 494 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g 494 (605)
+.|++++|...++.+.+ ..+.+...++.++..+...|++++|.+.|++. ...|+. . .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999987 44556788999999999999999999999986 333321 1 1122222334469
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++++|..+++++++++|++...+..++.++.+.|++++|++++++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=185.65 Aligned_cols=311 Identities=12% Similarity=0.051 Sum_probs=215.7
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCch
Q 037404 254 GYSKDGDMEMAKLLFDRMPAKTLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD---DGTLISILAACAESGLL 327 (605)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~ 327 (605)
.+...|++++|...|+++.+.++. .+..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555666666666665543322 255566666666666666666666665322111 13445556666666677
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------hhHHHHHHHHHHHcCChHHHHHH
Q 037404 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD--------LVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+.|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77776666666542 2345566677777777777777777777664221 12345667778889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC
Q 037404 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP 478 (605)
Q Consensus 400 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 478 (605)
|+++.+.. +.+...+..+...+.+.|++++|.++++++... .......++..++.+|...|++++|.+.++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99988753 234567777888899999999999999999762 22222456788999999999999999999988 5567
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCceeEEE
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA---TGDWNKVANVRLQMKKTRAQKPSGASSVE 555 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 555 (605)
+...+..++..+.+.|++++|..+++++++..|+++. +..+...+.. .|+.+++..+++++.++++.++|.+....
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~ 359 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRN 359 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCC
Confidence 7777788899999999999999999999999998774 4444444432 56999999999999999988888755443
Q ss_pred eCCeEEEEEeCCC
Q 037404 556 VDNEVHEFSVCDQ 568 (605)
Q Consensus 556 ~~~~~~~~~~~~~ 568 (605)
.+.....|..-|.
T Consensus 360 cg~~~~~~~~~c~ 372 (389)
T PRK11788 360 CGFTARTLYWHCP 372 (389)
T ss_pred CCCCCccceeECc
Confidence 4433334444333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-19 Score=173.48 Aligned_cols=513 Identities=12% Similarity=0.067 Sum_probs=368.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHH---HHhCC---CchHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA---CVQNS---LNAQAFR 101 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~---~~~~~---~~~~a~~ 101 (605)
+++..+...|...+.-....-+.....+...+.+.|+.+.|+..|+.+.+-|+..-++++.. -.... .+..++.
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 77788888888866654333334444455777888999999999988876555544444421 12222 3344555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC--CcchhhHHHHHHHhcCCCChHHHHHHHhccC
Q 037404 102 VFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG--DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179 (605)
Q Consensus 102 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~ 179 (605)
++...-... .-|+...+.|.+.+.-.|++..+..+...+....... -...|--+.++|...| +++.|...|.+..
T Consensus 258 ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G--d~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 258 LLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG--DFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHH
Confidence 555444332 3367778888888888999999999998888765221 2234667888999999 9999999998765
Q ss_pred C--CC--eehHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCC----ChHHHHHHHHhCCCC---Ch
Q 037404 180 E--RD--IVSWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAG----EMNLAFELFEKIPHR---NI 245 (605)
Q Consensus 180 ~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~---~~ 245 (605)
. +| +..+--+...+.+.|+++.+...|+.. ..| +..+...+...|+..+ ..+.|..++.+..++ |.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 4 22 345667888999999999999999998 334 4556667777776664 567778887777653 55
Q ss_pred hHHHHHHHHHHhcCCH------HHHHHHHhhCCCC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHH---
Q 037404 246 VSWSTMVWGYSKDGDM------EMAKLLFDRMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEA---GLKPDDG--- 312 (605)
Q Consensus 246 ~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~--- 312 (605)
..|..+..+|....-+ ..|.+++...... .+...|.+...+...|++.+|...|+..... ...+|..
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 6777777776655443 3344333332222 3333889999999999999999999998765 1233331
Q ss_pred ---HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 313 ---TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 313 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
+--.+.......++.+.|.+.|+.+.+..+ .-+..|-.++-+....+...+|...++... ..++..++.+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 223445566677899999999999987642 223344444444445577888888888766 4577888888889
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcc------------cCCHHHHHHHHHHhHHhhCCCCchHHHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTH------------AGFIDKGVQYFYSMERDYGILPQVEHYGC 453 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 453 (605)
+.....+..|.+-|....+.- ..+|.++...|...|.. .+..++|+++|.++.+ ..+.|...-|.
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccc
Confidence 999888888888777666532 23577776666665542 3456788888888877 56678888888
Q ss_pred HHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCC
Q 037404 454 MIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 529 (605)
++-.++..|++.+|..+|.+. ....+..+|..++.+|...|++..|+++|+...+.. .+++.++..|++++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999988 223456788899999999999999999999999874 4678899999999999999
Q ss_pred hHHHHHHHHHHHhCCCC
Q 037404 530 WNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 530 ~~~A~~~~~~~~~~~~~ 546 (605)
+.+|.+.+..+....+.
T Consensus 732 ~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999999999886543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-18 Score=175.63 Aligned_cols=324 Identities=9% Similarity=-0.011 Sum_probs=246.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhc
Q 037404 185 SWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKD 258 (605)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 258 (605)
-...++..+.+.|++++|+.+++.. ..| +...+..++.+....|+++.|...++++.. .+...+..+...+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3455667778888888888888877 223 344555666677778888888888888764 3456788888888899
Q ss_pred CCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 037404 259 GDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335 (605)
Q Consensus 259 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 335 (605)
|++++|...+++.... +...+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988887653 23347788888899999999999998887653 332222222334778899999999988
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCC
Q 037404 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK----ALGLFSRMKDEGF 408 (605)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~g~ 408 (605)
.+.+....++......+...+...|++++|...++++. +.+...+..+...|...|++++ |...|++..+.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 88776543444455566778888999999999998765 3456778888889999999885 78999988875
Q ss_pred CC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHH
Q 037404 409 GP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAII-WGT 485 (605)
Q Consensus 409 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ 485 (605)
.| +...+..+...+...|++++|...++++.. ..+.+...+..+...+.+.|++++|.+.++++ ...|+... +..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 44 456788888899999999999999999887 33445667778889999999999999999887 44566443 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
+..++...|++++|+..|+++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56778889999999999999999988865
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-18 Score=175.23 Aligned_cols=347 Identities=12% Similarity=0.024 Sum_probs=277.5
Q ss_pred HHhCCChhHHHHHHhhcCC------CCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHH
Q 037404 193 LVKGGELSEARRLFDEMPE------RDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEM 263 (605)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 263 (605)
+.+..+++.-.-+|....+ .+......++..+.+.|++++|..+++.... .+...+..++.+....|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3455666665555555521 1333456678888999999999999988753 345667777788888999999
Q ss_pred HHHHHhhCCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc
Q 037404 264 AKLLFDRMPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340 (605)
Q Consensus 264 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (605)
|...++++...++ ..|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999875433 448888899999999999999999999852 334567778888999999999999999988766
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
...+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 5433 3344333 3478899999999999987643 23344555678899999999999999999864 33566778
Q ss_pred HHHHHhcccCCHHH----HHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 037404 417 GVLCACTHAGFIDK----GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGAC 490 (605)
Q Consensus 417 ~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 490 (605)
.+..++...|++++ |...++++.+ ..+.+...+..++..+.+.|++++|...+++. ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88899999999986 8999999987 34456778999999999999999999999988 44454 55777888999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.+.|++++|+..++++.+..|.++..+..++.++...|+.++|+..+++..+..+
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999887777788999999999999999999988654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-17 Score=171.54 Aligned_cols=418 Identities=12% Similarity=0.005 Sum_probs=294.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Q 037404 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162 (605)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (605)
+......+.+.|+++.|+..|++.++. .|+...|..+..++...|+++.|...++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667888999999999999998864 6777788888888999999999999999998864 2345688889999999
Q ss_pred cCCCChHHHHHHHhccCCCC---eehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHh
Q 037404 163 CGVVGVSLAKKLFMSMGERD---IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239 (605)
Q Consensus 163 ~g~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 239 (605)
.| ++++|...|......+ ......++..+........+...++.- .++...+..+.. +...........-+..
T Consensus 207 lg--~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LG--KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred cC--CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 99 9999988776543211 111112222111111122233333221 122222222222 2221111111121222
Q ss_pred CCCCCh---hHHHHHHHHH---HhcCCHHHHHHHHhhCCCCC------cccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037404 240 IPHRNI---VSWSTMVWGY---SKDGDMEMAKLLFDRMPAKT------LVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307 (605)
Q Consensus 240 ~~~~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 307 (605)
..+.+. ..+..+...+ ...+++++|.+.|+...+.+ ...|..+...+...|++++|+..|++.++.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 111111 1111111111 23478999999999876532 223778888889999999999999999885
Q ss_pred CCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHH
Q 037404 308 KPD-DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAM 383 (605)
Q Consensus 308 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 383 (605)
.|+ ...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++.. +.+...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 5577888888999999999999999998765 3467888999999999999999999999876 3456778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hH-------HHHHHH
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VE-------HYGCMI 455 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~ 455 (605)
...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+..... .|+ .. .++..+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 899999999999999999988752 335678888899999999999999999998762 221 11 122223
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
..+...|++++|.+++++. ...|+ ...+..++..+.+.|++++|+..++++.++.+...
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 3344579999999999986 55555 44788899999999999999999999999876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-17 Score=162.57 Aligned_cols=517 Identities=12% Similarity=0.044 Sum_probs=379.7
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccC---ChhHHHHHhcccC---CCCcccHHHHHHHHHhC
Q 037404 20 KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR---QMGLAIKVFNDIQ---DPDVHLYNTLIRACVQN 93 (605)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 93 (605)
..-.+..|++...|+-.|....+.+. -++.++..|.-.-.... .+..+..++...- ..|+...+.|...|...
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK 283 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc
Confidence 34467788999999999999887652 34444444433333333 3455666665443 46888899999999999
Q ss_pred CCchHHHHHHHHHHhCCCC--CCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHH
Q 037404 94 SLNAQAFRVFLDMQEKGVF--TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA 171 (605)
Q Consensus 94 ~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a 171 (605)
|+++.++.+...+...... .-...|-.+.+++-..|+++.|..+|.+..+.....-...+-.|.++|.+.| +.+.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~--dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG--DLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc--hHHHH
Confidence 9999999999998875311 1234578888999999999999999988877543222344567899999999 99999
Q ss_pred HHHHhccCC--C-CeehHHHHHHHHHhCC----ChhHHHHHHhhcCCC---CcchHHHHHHHHHcCCChHHHHHHHHh--
Q 037404 172 KKLFMSMGE--R-DIVSWNSMIAGLVKGG----ELSEARRLFDEMPER---DAVSWNTILDGYAKAGEMNLAFELFEK-- 239 (605)
Q Consensus 172 ~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~-- 239 (605)
...|+.+.. | +..+...|...|...+ ..+.|..++.+..++ |...|..+...+-...- ..++..|..
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHH
Confidence 999998865 3 4456666666676664 457777777777443 45566666555544333 222444432
Q ss_pred ------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------Cc------ccHHHHHHHHHhCCChHHHHHHHH
Q 037404 240 ------IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-------TL------VPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 240 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
+....+...|.+...+...|++.+|...|...... +. ..-..+...+-..++++.|.+.|+
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 23467788999999999999999999999876432 11 112235666677889999999999
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-----C
Q 037404 301 QMEEAGLKPDDG-TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-----K 374 (605)
Q Consensus 301 ~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~ 374 (605)
.+.+. .|.-+ .|..++......+...+|...++.+...+ ..++..++.+...+....++..|.+-|..+. .
T Consensus 521 ~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 521 SILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 99986 45544 34444434445677888999988887755 4467778888889999888888888665443 2
Q ss_pred CChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 375 KDLVSWNAMLYGLAM------------HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 375 ~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
+|..+.-+|...|.+ .+..++|+.+|.+..+.. +-|...-+.+..+++..|++.+|..+|....+.
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa- 675 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA- 675 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH-
Confidence 355555555554432 345678999999888753 347778888888999999999999999999883
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
......+|..++.+|..+|++-.|+++|+.. ....+..+...|.+++.+.|.+.+|.+.+..+....|.++.+.+
T Consensus 676 -~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 676 -TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred -HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 3345567889999999999999999999887 23457788999999999999999999999999999999998888
Q ss_pred HHHHHHHhcC-------------------ChHHHHHHHHHHHhCCCC
Q 037404 519 MLSNIFAATG-------------------DWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 519 ~l~~~~~~~g-------------------~~~~A~~~~~~~~~~~~~ 546 (605)
.++-+..+.+ ..++|.++|..+...+-+
T Consensus 755 N~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 755 NLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7776654433 477788888888876544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-17 Score=173.22 Aligned_cols=399 Identities=10% Similarity=-0.018 Sum_probs=202.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC
Q 037404 86 LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165 (605)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (605)
.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..+...+...|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g- 97 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG- 97 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC-
Confidence 3445555677777777776665421 2233345666666666677777777666666542 223344455555666666
Q ss_pred CChHHHHHHHhccCC--C-CeehHHHHHHHHHhCCChhHHHHHHhhc--CCCC-cchHHHHHHHHHcCCChHHHHHHHHh
Q 037404 166 VGVSLAKKLFMSMGE--R-DIVSWNSMIAGLVKGGELSEARRLFDEM--PERD-AVSWNTILDGYAKAGEMNLAFELFEK 239 (605)
Q Consensus 166 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 239 (605)
+.++|...+++..+ | +.. +..+..++...|+.++|+..++++ ..|+ ...+..+..++...+..+.|.+.++.
T Consensus 98 -~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 98 -QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred -CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666655533 2 233 555555555666666666666555 2232 22233344444445555555555544
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHH-----hCCCh---HHHHHHHHHHHHc-CCCCC
Q 037404 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA-----EKGMA---KEAARLYDQMEEA-GLKPD 310 (605)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~-~~~p~ 310 (605)
... ++.....+ +. .+...++.... ..+++ ++|++.++.+.+. ...|+
T Consensus 176 ~~~-~p~~~~~l--------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 176 ANL-TPAEKRDL--------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred CCC-CHHHHHHH--------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 433 11100000 00 00111111111 11222 5666777766643 11222
Q ss_pred HH-HHH----HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-------hh
Q 037404 311 DG-TLI----SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD-------LV 378 (605)
Q Consensus 311 ~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~ 378 (605)
.. .+. ..+..+...|++++|...|+.+.+.+.+........+..+|...|++++|+..|+++...+ ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 21 111 1123334556667777777766655422111122224556666677777777666654221 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCC
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGF-----------GPDK---YTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 444 (605)
.+..+..++...|++++|..+++++..... .|+. ..+..+...+...|+.++|++.++++.. ..
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NA 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 344455566667777777777776665320 1221 1233444455566666666666666655 33
Q ss_pred CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+.+...+..++..+...|++++|++.++++ ...|+ ...+...+..+...|++++|+..++++++..|+++.
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 444555666666666666666666666655 33344 334444455555666666666666666666666653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-17 Score=175.66 Aligned_cols=390 Identities=8% Similarity=-0.019 Sum_probs=237.4
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHH
Q 037404 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLV 194 (605)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 194 (605)
..-.+......|+.++|..++....... +.+...+..+...+...| ++++|..++++..+ .+...+..++..+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK--QWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3344444555555555555555554311 222233455555555555 55555555555321 22334444444555
Q ss_pred hCCChhHHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037404 195 KGGELSEARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272 (605)
Q Consensus 195 ~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 272 (605)
..|++++|+..+++. ..|+ +.. +..+..++...|+.++|+..++++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~------------------------------~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPD------------------------------KAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCC------------------------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555554 1221 222 4444444444444555544444443
Q ss_pred CCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHH-----HccCch---HHHHHHHH
Q 037404 273 AKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD------GTLISILAAC-----AESGLL---GLGMKVHA 335 (605)
Q Consensus 273 ~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~ 335 (605)
+..+.. +..+...+...+..++|+..++.... .|+. ......+... ...+++ +.|.+.++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 322211 33344444444555555554443332 1111 0011111111 112233 67777888
Q ss_pred HHHHc-CCCCChh--HHHH---HHHHHHhcCChHHHHHHHhcCCCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037404 336 SINKY-RFKCNTN--VCNA---LVDMYAKCGSLDNAMSVFNGMTKKD---LV-SWNAMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 336 ~~~~~-~~~~~~~--~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
.+.+. ...|+.. .... .+..+...|++++|+..|+.+...+ +. ....+...|...|++++|+.+|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 87754 2222221 1111 1334567799999999999988542 21 222357789999999999999999886
Q ss_pred CCCCC---CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC----------CCCc---hHHHHHHHHHhhhcCCHHHHHH
Q 037404 406 EGFGP---DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG----------ILPQ---VEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 406 ~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
..... .......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43111 124456667788999999999999999977210 1122 2345677888999999999999
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 470 LVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 470 ~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+++++ . .+.+...+..++..+...|++++|++.++++++.+|+++..+..++..+.+.|++++|+.+++++.+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99998 3 334567888899999999999999999999999999999999999999999999999999999999854
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-18 Score=169.28 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=182.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCc-------ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTL-------VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
++..+...+...|++++|..+++.+..... ..+..++..|...|++++|..+|+++.+.. +++..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444445555555554444432211 124555666666666666666666666542 334555666666
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCN----TNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 392 (605)
.+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+ .+...+..+...|.+.|+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 66666777777666666665443221 12345667778888899999888887652 345677788889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
+++|.++++++.+.+......++..+..+|...|++++|...++++.+. .|+...+..++..+.+.|++++|.++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999987532222456788889999999999999999998772 4666777889999999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhh
Q 037404 473 SM-PVEPNAIIWGTLLGACRK---HNAVELAEEVLDCLIRL 509 (605)
Q Consensus 473 ~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 509 (605)
++ ...|+...+..++..+.. .|+.+++...++++++.
T Consensus 307 ~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 307 EQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 77 667998888888877664 55888999999888864
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-16 Score=159.48 Aligned_cols=440 Identities=12% Similarity=0.039 Sum_probs=297.2
Q ss_pred HHHHHhccCChhHHHHHhcccCC--CCcc-cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH---HHHhhcc
Q 037404 55 LISSLALCRQMGLAIKVFNDIQD--PDVH-LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL---LKACNGK 128 (605)
Q Consensus 55 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~ 128 (605)
.+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence 34445688999999999988874 3321 12267777888899999999888887 3333333222 3457777
Q ss_pred CCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCee--hHHHHHHHHHhCCChhHHHHHH
Q 037404 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV--SWNSMIAGLVKGGELSEARRLF 206 (605)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 206 (605)
|+++.|.++++.+++..+. +...+..++..|...+ +.++|.+.++++...+.. .+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~--q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG--RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC--CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 8899999999988886533 3566667778888888 888888888887764433 3333333333345555588888
Q ss_pred hhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHH
Q 037404 207 DEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283 (605)
Q Consensus 207 ~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 283 (605)
+++ ..| +...+.....++.+.|-...|.++...-.. ..+-..... =+.+.|.+..+....++.. - -
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a~~vr~a~~~~~~-~---~ 261 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAAEQVRMAVLPTRS-E---T 261 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHHHHHhhccccccc-c---h
Confidence 877 344 344556666777777777777777665331 111100000 0112222222111100000 0 0
Q ss_pred HHHHhCCChHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 037404 284 SGYAEKGMAKEAARLYDQMEEA-GLKPDD-G----TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357 (605)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (605)
. +.--.+.|+.-++.+... +..|.. . ...-.+.++...|+...+++.++.+...+.+....+-.++.++|.
T Consensus 262 ~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 262 E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 0 001235566666665542 112322 1 223456677888999999999999998887767778889999999
Q ss_pred hcCChHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--HH-H
Q 037404 358 KCGSLDNAMSVFNGMTKK---------DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-----------GPD--KY-T 414 (605)
Q Consensus 358 ~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~--~~-~ 414 (605)
..+++++|+.+|..+... +......|..+|...+++++|..+++++.+.-. .|| -. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 999999999999987532 223356788899999999999999999987311 122 22 2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRK 492 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 492 (605)
+..++..+...|+..+|++.++++.. .-+-|......+...+...|.+.+|++.++.+ ...|+ ..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 44456778899999999999999977 56678899999999999999999999999876 45565 4466677888889
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchH
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
.|++++|..+.+.+.+..|+++.+-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999998543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-17 Score=146.14 Aligned_cols=437 Identities=14% Similarity=0.101 Sum_probs=310.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHH-HHhhccCCHHHHHHHHHHHHHhCCCCCcch----hhHHHHHH
Q 037404 86 LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL-KACNGKNWFHLVQMIHALIYKCGYFGDIFV----PNSLIDSY 160 (605)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~ 160 (605)
|.+.|..+....+|+..|+-..+....|+.-.+..-+ ..+.+.+.+..|.++++..++.-+..+..+ .+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4456777778899999999999888888887655444 347788899999999999887654444333 33444457
Q ss_pred HhcCCCChHHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHhhcCC----------------CCcchHHHH--
Q 037404 161 SKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIAGLVKGGELSEARRLFDEMPE----------------RDAVSWNTI-- 220 (605)
Q Consensus 161 ~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~l-- 220 (605)
.+.| .++.|...|+...+ |+..+-..|+-++..-|+-++..+.|.+|+. |+....+..
T Consensus 287 iq~g--qy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAG--QYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred Eecc--cchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7888 99999999988765 6665544555566667889999999988821 222222221
Q ss_pred ---HHHHHcCCC--hHHHHHHHHhCC----CCChh-------------HHH--------HHHHHHHhcCCHHHHHHHHhh
Q 037404 221 ---LDGYAKAGE--MNLAFELFEKIP----HRNIV-------------SWS--------TMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 221 ---l~~~~~~~~--~~~a~~~~~~~~----~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~~~~ 270 (605)
++-.-+.+. .++++-.--++. .|+.. .+. .-..-|.+.|+++.|.++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 222222211 222222111222 22211 011 112347789999999999888
Q ss_pred CCCCCccc----HHHHHHHH-H-hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC
Q 037404 271 MPAKTLVP----WTIIISGY-A-EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344 (605)
Q Consensus 271 ~~~~~~~~----~~~l~~~~-~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 344 (605)
..+.+..+ -+.|-..+ . .-.++..|..+-+..+... .-+......-.......|++++|...|++.....-..
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 77655444 22222222 2 2346677777666655432 2333333333344456789999999999998766444
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
....|+ +.-.+-..|++++|+++|-++. ..+......+...|-...+..+|++++.+.... ++.|+..+..|...
T Consensus 524 ~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 444444 3445778899999999998765 557778888899999999999999999887664 45577888899999
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGAC-RKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A 499 (605)
|-+.|+..+|.+.+-.-.+ -++-+..+...|...|....-+++|+.+|++. -+.|+..-|..++..| .+.|++++|
T Consensus 602 ydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999998877654 56678999999999999999999999999998 6789999999887666 567999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
..+|+...+..|.+...+..|.++....|.
T Consensus 680 ~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 680 FDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999888874
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-15 Score=154.66 Aligned_cols=193 Identities=11% Similarity=0.050 Sum_probs=158.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHh
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-----FGPDKYTFVGVLCAC 422 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~ 422 (605)
.+-++...|+..++++.|+.+... ...+-..+.++|...+++++|+.+++++.... ..++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 355677889999999999999833 23456678899999999999999999987643 122334457888999
Q ss_pred cccCCHHHHHHHHHHhHHhhC----------CCCc---hHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYG----------ILPQ---VEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLL 487 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 487 (605)
...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ .-+-|......+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999987211 0122 233455678889999999999999998 3345677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+...|.+.+|++.++.+...+|++..+....+.++...|+|++|..+.+.+.+..
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998888754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-14 Score=133.03 Aligned_cols=499 Identities=11% Similarity=0.056 Sum_probs=387.9
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 037404 34 KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 110 (605)
.++++..+++ ++.++..|...+. ..+.++|+-++....+ .++..| -++++..-++.|..++++.++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-
Confidence 5566655553 3555555555444 3456668888776653 333333 4566677788899999998876
Q ss_pred CCCCcccHHHHHHHhhccCCHHHHHHHHHHHH----HhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC------
Q 037404 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIY----KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE------ 180 (605)
Q Consensus 111 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~------ 180 (605)
++-+...+.+....--.+|+.+....+...-+ ..|+..+..-|..=...+-..| ..-.+..+...+..
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag--sv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG--SVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhccccc
Confidence 77788888777777778888888877776543 4566666666666666666666 55555555544432
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCC--C-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHH
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPE--R-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWG 254 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 254 (605)
.-..+|..-...|.+.+.++-|..+|....+ | +...|......--..|..+.-..+|++... .....|-.....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 1234788888899999999999999988833 3 455666666666678888888888888764 344567777788
Q ss_pred HHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 037404 255 YSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331 (605)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (605)
+-..|++..|..++....+.++.+ |-.-+.....+..++.|..+|.+.... .|+...|.--+..-.-.++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 888999999999998876654444 888888889999999999999998874 677777777777777788999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037404 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 408 (605)
+++++..+.- +.-...|-.+.+.+-+.++++.|.+.|..-. +..+..|-.+...--+.|+.-+|..++++.+-.+
T Consensus 672 rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 672 RLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 9999888754 3345678888999999999999999998655 4466788888888889999999999999988765
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 488 (605)
+-+...|...++.-.+.|+.+.|..++.++.+ .++.+...|..-|.+..+.++-.++...+++.. .|+.++..+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHH
Confidence 44677899999999999999999999999998 577788889989999888888778877777764 57778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 554 (605)
.+....++++|++.|.++++.+|++.++|..+-..+.+.|.-++-.+++.+..... |.-|..|.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~ 889 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999888754 44555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-14 Score=138.27 Aligned_cols=521 Identities=12% Similarity=0.096 Sum_probs=348.9
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCC
Q 037404 18 EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNS 94 (605)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~ 94 (605)
...+..+.+.|+.++|..++..+++.. +.+...|..|...|-..|+.+++...+--+. +.|..-|-.+..-..+.|
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 345667777899999999999999986 6888999999999999999999998876543 567788999999999999
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhH----HHHHHHhcCCCChHH
Q 037404 95 LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS----LIDSYSKCGVVGVSL 170 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~~~ 170 (605)
++++|.-+|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-... .+..+...+ +-+.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~--~~e~ 298 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN--ERER 298 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh--HHHH
Confidence 9999999999999873 33544455556668899999999999999998765333333333 345566667 6688
Q ss_pred HHHHHhccCC-----CCeehHHHHHHHHHhCCChhHHHHHHhhcCC----CC----------------------cchHH-
Q 037404 171 AKKLFMSMGE-----RDIVSWNSMIAGLVKGGELSEARRLFDEMPE----RD----------------------AVSWN- 218 (605)
Q Consensus 171 a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~- 218 (605)
|.+.++.... .+...++.++..+.+...++.|......+.. +| ...|.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 8888876653 3456789999999999999999888776622 11 11111
Q ss_pred ---HHHHHHHcCCChHHHHHHHHhCC------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHH
Q 037404 219 ---TILDGYAKAGEMNLAFELFEKIP------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK----TLVPWTIIISG 285 (605)
Q Consensus 219 ---~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~ 285 (605)
.++-++......+....+..... ..+...|..+..+|...|++..|.++|..+... +...|-.+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 11222333333333333332222 234567888889999999999999999888643 33348888999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHH
Q 037404 286 YAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASIN--------KYRFKCNTNVCNALVDMY 356 (605)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~ 356 (605)
|...|.+++|...|...+.. .|+ ...-.++...+.+.|+.++|.+.+..+. ..++.|+..+.......+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999998875 344 3445567777888999999998888853 233455566666666677
Q ss_pred HhcCChHHHHHHHhcCCC----------------------------------------C---------------------
Q 037404 357 AKCGSLDNAMSVFNGMTK----------------------------------------K--------------------- 375 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~~----------------------------------------~--------------------- 375 (605)
.+.|+.++=..+-..|.. +
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 777776654332221110 0
Q ss_pred ----Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 376 ----DL----VSWNAMLYGLAMHGQGEKALGLFSRMKDEGF--GPDKY--TF-VGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 376 ----~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~--~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
.. ..+.-++.++++.+++++|+.+...+..... .++.. .+ ...+.++...+++..|...++.+....
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00 1234566778889999999999988876532 12221 22 334566778899999999999888743
Q ss_pred CCCCc---hHHHHHHHHHhh-----------------------------------hcCCHHHHHHHHHhC-CCCCCHHHH
Q 037404 443 GILPQ---VEHYGCMIDLLG-----------------------------------RSGRLKEALRLVQSM-PVEPNAIIW 483 (605)
Q Consensus 443 ~~~~~---~~~~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~-~~~p~~~~~ 483 (605)
+...+ ...|+.....+. .++.+.-|+..+-++ ...|+....
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 33322 223442222222 223344555544333 223442222
Q ss_pred HHH-HHHHH----------hcCCHHHHHHHHHHHHhhcCC--CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 484 GTL-LGACR----------KHNAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 484 ~~l-~~~~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+.+ +.++. ++-..-++..++.+..++... .-.+.+.+|++|-..|-..-|+.+|+++.+..
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 221 12211 111244455556555555422 44678999999999999999999999999864
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-14 Score=126.11 Aligned_cols=307 Identities=11% Similarity=0.148 Sum_probs=200.5
Q ss_pred HhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHh--ccCChhHH------------------------HHHhcccCC
Q 037404 24 LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA--LCRQMGLA------------------------IKVFNDIQD 77 (605)
Q Consensus 24 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A------------------------~~~~~~~~~ 77 (605)
+-..+.+.++.-+|..|.+.|++.++.+...|+..-+ ...++.-| -+++.+..+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 3456888889999999999999988888777766433 22222111 113333334
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHH
Q 037404 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157 (605)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (605)
.+..+|..||.++|+-...++|.++|++......+.+..+||.+|.+-+-.. .++++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 5667888999999998888999999999888888888889999888743222 277888888888899999999999
Q ss_pred HHHHhcCCCChHHHHHH----HhccC----CCCeehHHHHHHHHHhCCChhH-HHHHHhhc--------CC---C-Ccch
Q 037404 158 DSYSKCGVVGVSLAKKL----FMSMG----ERDIVSWNSMIAGLVKGGELSE-ARRLFDEM--------PE---R-DAVS 216 (605)
Q Consensus 158 ~~~~~~g~~~~~~a~~~----~~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~--------~~---~-~~~~ 216 (605)
++.++.| +++.|.+. +.+|+ +|+..+|..+|..+.+.++..+ |..++.++ .+ | |...
T Consensus 281 ~c~akfg--~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 281 SCAAKFG--KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999988 77665444 34443 3666777777777777766543 22333222 11 1 2333
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChH
Q 037404 217 WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV---PWTIIISGYAEKGMAK 293 (605)
Q Consensus 217 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 293 (605)
|...+..|.+..+.+.|.++..-....+ +++.. .++.. -|..+....++....+
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~---------------N~~~i--------g~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGD---------------NWKFI--------GPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCC---------------chhhc--------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544432221100 00000 00111 1455666777777788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
.....|+.|.-.-.-|+..+...++++..-.+.++-..+++..++..|.........-++..+++.
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 888888888877777888888888888888888888888888888877655555444444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-12 Score=122.66 Aligned_cols=482 Identities=14% Similarity=0.087 Sum_probs=375.7
Q ss_pred hhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHH
Q 037404 25 HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFR 101 (605)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (605)
.......+|+-++...++. .+.+... .-+|++..-++.|..+++... +.+...|-+-...--.+|+.+...+
T Consensus 387 VelE~~~darilL~rAvec-cp~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-CPQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3334445555555555543 2233333 344566667888888887765 5677888776666677888888877
Q ss_pred HHHH----HHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC--CcchhhHHHHHHHhcCCCChHHHHHHH
Q 037404 102 VFLD----MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG--DIFVPNSLIDSYSKCGVVGVSLAKKLF 175 (605)
Q Consensus 102 ~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~a~~~~ 175 (605)
+.++ +...|+..+...+..=...|-..|..-.+..+....+..|++. ...+|..-.+.|.+.+ .++-|+.+|
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~--~~~carAVy 539 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP--AIECARAVY 539 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc--hHHHHHHHH
Confidence 7665 4567888888888888888989999999999999999888753 3458888889999999 999999998
Q ss_pred hccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC---CCCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChh
Q 037404 176 MSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP---ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIV 246 (605)
Q Consensus 176 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 246 (605)
....+ .+...|...+..--..|..++-..+|++.+ +.....|......+-..|+...|..++....+ .+..
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 87654 356678888877778899999999999983 33444555556777788999999999887764 3557
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV--PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD-GTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~ 323 (605)
.|..-+..-..+.+++.|..+|.+....... .|..-+....-.++.++|++++++.++. -|+- ..|..+...+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 8889999999999999999999998754433 3766666666789999999999999884 5664 455666677888
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 400 (605)
.++++.|...|..-.+. ++..+..|-.|...--+.|.+-.|..++++.. +.+...|-..|+.-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 89999998887664443 34567788888888889999999999999766 447789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN 479 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 479 (605)
.+..+. ++.+...|..-|...-+.++-......+++. ..|+.+...+...|....++++|.+.|.+. ...||
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 988875 4556677777777777777766666555544 457778888999999999999999999988 56666
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 480 -AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 480 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
..+|.-+...+.++|.-+.-.+++.+...-.|.+...|.....-
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 55888889999999999999999999999999998888776644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-14 Score=130.30 Aligned_cols=421 Identities=13% Similarity=0.109 Sum_probs=296.4
Q ss_pred cHHHHHHH---hhccCCHHHHHHHHHHHHHhCCCCCcchh-hHHHHHHHhcCCCChHHHHHHHhccCC--C--Ce----e
Q 037404 117 TYPFLLKA---CNGKNWFHLVQMIHALIYKCGYFGDIFVP-NSLIDSYSKCGVVGVSLAKKLFMSMGE--R--DI----V 184 (605)
Q Consensus 117 ~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~a~~~~~~~~~--~--~~----~ 184 (605)
||..|... |.......+|...++.+++...-|+.... ..+...+.+.. .+..|.+.++.... | +. .
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr--~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR--EFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehh--hHHHHHHHHHHHHhhccccchhhHHH
Confidence 56555543 66677788999999999998887776543 34566677777 89999988865432 2 22 2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCC----------------CChh
Q 037404 185 SWNSMIAGLVKGGELSEARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----------------RNIV 246 (605)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------~~~~ 246 (605)
..+.+.-.+.+.|+++.|+..|+.. ..|+-.+-..++-++...|+.++..+.|.++.. |+..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 3444445678999999999999988 557766666667777788999999999988763 1222
Q ss_pred HHH-----HHHHHHHhcCC--HHHHHHHHhhCCCCCccc-------HHH------------------HHHHHHhCCChHH
Q 037404 247 SWS-----TMVWGYSKDGD--MEMAKLLFDRMPAKTLVP-------WTI------------------IISGYAEKGMAKE 294 (605)
Q Consensus 247 ~~~-----~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~-------~~~------------------l~~~~~~~~~~~~ 294 (605)
..+ ..+.-.-+.+. -++++-.--++..+-+.+ |.. -...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222 12222222221 122222222222222211 211 1235778999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 295 AARLYDQMEEAGLKPDDGTLISI--LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 295 a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
|+++++-+.+..-+.-...-+.+ +.......++..|.++-+...... .-+......-.+.....|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999988776533333333322 222223446777777766655432 223333333344455679999999999999
Q ss_pred CCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH
Q 037404 373 TKKDLVSWNAMLY---GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 373 ~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
...|..+-.++.. .+-..|+.++|++.|-++... +..+...+..+...|....+..+|++++..... -++.|+.
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 9887765555543 467789999999999987753 344667778888899999999999999988865 5666888
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
+...|...|-+.|+-..|.+..-.- . .+.+..+..-|..-|....-+++++.+|+++.-+.|........++.++.+.
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 9999999999999999999976554 3 3456778887888888888999999999999999999888888888999999
Q ss_pred CChHHHHHHHHHHHhC
Q 037404 528 GDWNKVANVRLQMKKT 543 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~ 543 (605)
|++..|..+|+....+
T Consensus 674 gnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-12 Score=129.45 Aligned_cols=482 Identities=13% Similarity=0.037 Sum_probs=306.5
Q ss_pred HHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHH
Q 037404 56 ISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132 (605)
Q Consensus 56 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 132 (605)
.+.+...|+.++|.+++.++. +.+...|.+|...|-+.|+.+.++..+-..-.. .+-|...|..+-......|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 333444599999999999987 356778999999999999999999877665544 3336678888888889999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCe----e----hHHHHHHHHHhCCChhHHHH
Q 037404 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI----V----SWNSMIAGLVKGGELSEARR 204 (605)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~ 204 (605)
.|.-.+..+++.. +++...+-.-...|-+.| +...|..-|.++.+.++ . .--..+..+...++-+.|.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTG--DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999875 334555566778899999 99999988888765332 1 22334567778888899999
Q ss_pred HHhhcCC-----CCcchHHHHHHHHHcCCChHHHHHHHHhCCC-------------------------------CChhHH
Q 037404 205 LFDEMPE-----RDAVSWNTILDGYAKAGEMNLAFELFEKIPH-------------------------------RNIVSW 248 (605)
Q Consensus 205 ~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~~~ 248 (605)
.++.... -+...++.++..+.+...++.+......+.. .+..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 9888733 2445678888888888888888877544332 12222
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC------cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037404 249 STMVWGYSKDGDMEMAKLLFDRMPAKT------LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322 (605)
Q Consensus 249 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 322 (605)
..++-++......+....+...+...+ ...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122333333333333333333333333 22278889999999999999999999998755556778899999999
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh------------hHHHHHHHHHHHc
Q 037404 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL------------VSWNAMLYGLAMH 390 (605)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~l~~~~~~~ 390 (605)
..|..+.|.+.|..+.... +.+...--.|...+.+.|+.++|.+++..+..||. .........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998865 33566777888899999999999999999876652 1222234456667
Q ss_pred CChHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHhcccCCHHHHHHHHHHh-----HHhhC
Q 037404 391 GQGEKALGLFSRMKDEG-----FGP-----------------DKYTFVGVLCACTHAGFIDKGVQYFYSM-----ERDYG 443 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g-----~~p-----------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~ 443 (605)
|+.++-+.+...|...+ +-| ...+...++.+-.+.++......-...- ....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 77666554444433211 001 1111222222222222221111111110 00012
Q ss_pred CCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 037404 444 ILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM-P---VEPNAI---IW-GTLLGACRKHNAVELAEEVLDCLIRL---- 509 (605)
Q Consensus 444 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~---- 509 (605)
+.-+ -..+.-++..+++.+++++|+.+...+ . ...+.. .+ ...+.++...+++..|...++.++..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 2211 134455666677777777777776655 1 111111 22 22334455667777777777666665
Q ss_pred -cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 -KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|--...|+.....+.+.|+-.--..++......
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~ 734 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK 734 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3433444444444445555544444444444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=149.76 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=112.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL-ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355666777777777777555443223444333 33444556677788888888877765533 55566777776 6888
Q ss_pred ChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 361 SLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 361 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
++++|.+++.... .+++..+..++..+...++++++..+++++.... .+.+...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988887664 3456677788888999999999999999977533 345667788888899999999999999999
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+.+ ..+.|......++..+...|+.+++.++++.. ..+.|+..+..+..++...|++++|...++++.+.+|+|+.
T Consensus 172 al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 987 33446778889999999999999988888776 22455667888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+...+++++...|+.++|..++.++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-12 Score=113.54 Aligned_cols=424 Identities=15% Similarity=0.116 Sum_probs=238.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhh--ccCCHH-HHHHHHHHHHHhCCCCCcchhhH
Q 037404 79 DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN--GKNWFH-LVQMIHALIYKCGYFGDIFVPNS 155 (605)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ 155 (605)
.+++=|.|+. +..+|..+++.-+|+.|.+.|++.+...-..|++..+ ...+.- .-++-|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 3445666665 4567889999999999999998877766556655422 222211 112233333333321 22222
Q ss_pred HHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChH
Q 037404 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 156 l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
+.| +. |. ++-+...+...++..+|.++++--..+.|.+++++. .+-+..+||.+|.+-+-..+-+
T Consensus 191 ------K~G--~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~ 259 (625)
T KOG4422|consen 191 ------KSG--AV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKK 259 (625)
T ss_pred ------ccc--cH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHH
Confidence 223 32 33 555555566778888999999888888898888887 3456778888876654433333
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 037404 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311 (605)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 311 (605)
..-++...-..||..|+|+++.+..+.|+++.|.+. |++++.+|.+.|+.|.-
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcch
Confidence 333333333458888888888888888877665432 44445555555555555
Q ss_pred HHHHHHHHHHHccCchHH-HHHHHHHHHH----cCC----CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--------
Q 037404 312 GTLISILAACAESGLLGL-GMKVHASINK----YRF----KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------- 374 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 374 (605)
.+|..++..+.+.++..+ +..++.++.. ..+ +.+...|...+..|.+..+.+-|.++-.-+..
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 555555555555554432 2222222221 111 11233344445555555555555544432221
Q ss_pred C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 375 K---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 375 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
+ ...-|..+....++....+.-+.+|+.|.-.-+-|+..+...++++....|.++-.-++|..++. +|..-+....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~ 471 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLR 471 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHH
Confidence 1 11234445555566666666666666666555556666666666666666666666666666555 4444333333
Q ss_pred HHHHHHhhhcC-CH-------------HHHHHHH-------HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 452 GCMIDLLGRSG-RL-------------KEALRLV-------QSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 452 ~~l~~~~~~~g-~~-------------~~A~~~~-------~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.-+...+++.. +. +-|..++ .++ ...-....++.++-.+.+.|..++|.+++....+.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 33333333332 10 0011111 112 23345666777777888999999999999888664
Q ss_pred c---CCCCc--hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 510 K---GSDPG--NYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 510 ~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
. |..|. +...+.+.-.+...-..|...++-|...+.
T Consensus 552 ~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 552 HNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3 44442 223444555666778889999998876543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-13 Score=123.17 Aligned_cols=215 Identities=15% Similarity=0.148 Sum_probs=174.8
Q ss_pred HccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037404 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
.-.|+.-.+..-++..+.....++ ..|-.+..+|.+..+.++....|+... +.|+.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 345777788888888877664433 336666777889999999999998766 4577888888888888899999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037404 399 LFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV 476 (605)
Q Consensus 399 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 476 (605)
-|++.+.. .| +...|..+..+..+.+.++++...|++.++ .++.-++.|+.....+..++++++|.+.|+.. .+
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99998874 55 456777777788899999999999999998 67778889999999999999999999999987 34
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 477 EPN---------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 477 ~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.|+ +.+-.+++..- -.+++.+|+.++.++.+++|....++..|+.+..++|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 22222232222 348999999999999999999999999999999999999999999998875
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-11 Score=113.26 Aligned_cols=486 Identities=12% Similarity=0.048 Sum_probs=339.9
Q ss_pred CCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037404 48 DPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124 (605)
Q Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 124 (605)
+...+....+.-..++++..|+.+|+.... .+...|-.-+..-.++.+...|..++++....=+..|..-|. -+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 334444444444556788889999998874 566667777888889999999999999988753333433332 2223
Q ss_pred hhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccC--CCCeehHHHHHHHHHhCCChhHH
Q 037404 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG--ERDIVSWNSMIAGLVKGGELSEA 202 (605)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 202 (605)
--..|+...|+++|+.-.+ .+|+...|.+.|..-.+.. .++.|..+++... .|++.+|--....-.++|+...|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyk--eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYK--EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh--HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 3467899999999998876 5789999999999999999 9999999999865 58888998888888999999999
Q ss_pred HHHHhhcCCC--C----cchHHHHHHHHHcCCChHHHHHHHHhCCC----C-ChhHHHHHHHHHHhcCCHHHHHHHH---
Q 037404 203 RRLFDEMPER--D----AVSWNTILDGYAKAGEMNLAFELFEKIPH----R-NIVSWSTMVWGYSKDGDMEMAKLLF--- 268 (605)
Q Consensus 203 ~~~~~~~~~~--~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~--- 268 (605)
..+|...++- | ...+.+....-.+...++.|.-+|+-..+ . ....|..+...--+-|+.....+..
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999887331 2 22344444444556777888888765442 2 1344555555444556654444432
Q ss_pred -----hhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-------HHH---HHHHHHHccCchHHH
Q 037404 269 -----DRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG-------TLI---SILAACAESGLLGLG 330 (605)
Q Consensus 269 -----~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~---~ll~~~~~~~~~~~a 330 (605)
+.+.+.|+.. |--.++.--..|+.+...++|+..+.. ++|-.. .|. ..+-.-....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2333444444 555666667789999999999999876 555331 121 112222456889999
Q ss_pred HHHHHHHHHcCCCCChhHHHHH----HHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 331 MKVHASINKYRFKCNTNVCNAL----VDMYAKCGSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
.++++...+ -++....+|..+ ...-.++.++..|.+++.... -|...+|...|..-.+.+++|.+.+++++..
T Consensus 386 r~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999888 345555666544 334457889999999998776 4566788888888899999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 037404 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIW 483 (605)
Q Consensus 405 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 483 (605)
+-+ +-|..+|......-...|+.+.|..+|.-++....+.-....|.+.|.--...|.+++|..+++++ ...+...+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 854 336688888888888999999999999999874333444567778888888999999999999988 444555577
Q ss_pred HHHHHHHH-----hcC-----------CHHHHHHHHHHHHhhc----CCCC--chHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 484 GTLLGACR-----KHN-----------AVELAEEVLDCLIRLK----GSDP--GNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 484 ~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~----p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
-++..--. +.+ ....|..+|+++.... |... ..+..+.+.-...|...+...+-.+|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 66664433 334 5678999999988753 2111 122233333344565555554444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-11 Score=112.71 Aligned_cols=455 Identities=10% Similarity=0.042 Sum_probs=335.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 037404 79 DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158 (605)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (605)
+...|-.-.+.-..++++..|.++|++.+..... +...+.--+..-.+......|+.+++..+..-+..| ..|-..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 4555655666667788999999999999876432 555555566666788899999999999887543333 24444555
Q ss_pred HHHhcCCCChHHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHH
Q 037404 159 SYSKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIAGLVKGGELSEARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAF 234 (605)
Q Consensus 159 ~~~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 234 (605)
+--..| ++..|.++|+...+ |+..+|++.|+.-.+-+.++.|..++++. ..|+..+|.--...-.+.|....+.
T Consensus 150 mEE~Lg--Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLG--NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 555678 99999999998874 89999999999999999999999999998 7899999988888888999999999
Q ss_pred HHHHhCCC------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-----cHHHHHHHHHhCCChHHHHHH-----
Q 037404 235 ELFEKIPH------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV-----PWTIIISGYAEKGMAKEAARL----- 298 (605)
Q Consensus 235 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~----- 298 (605)
.+|+...+ .+...+.+....-.++..++.|.-+|+-..+.-+. .|..+...--+-|+.......
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99987764 22345666666666778888898888765432221 144444333345554443332
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh-hHHHHHHHH--------HHhcCChHHHH
Q 037404 299 ---YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT-NVCNALVDM--------YAKCGSLDNAM 366 (605)
Q Consensus 299 ---~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~g~~~~A~ 366 (605)
|+.+.+.+ +.|-.++-..+..-...|+.+...++|+.++..-.+.+. ..|...|-. -....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444443 567778888888888899999999999999875433221 222222221 13467888899
Q ss_pred HHHhcCC---CCChhHHHH----HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhH
Q 037404 367 SVFNGMT---KKDLVSWNA----MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439 (605)
Q Consensus 367 ~~~~~~~---~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (605)
++|+... +..-.||.- ......++.+...|.+++-..+ |..|...+|...|..-.+.+.++.+..++++..
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9987654 444455444 4445567889999999998766 578999999999999999999999999999998
Q ss_pred HhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+ -.+-+..+|...+..-...|+.+.|..+|+-+-.+|. ...|.+.+..-...|.++.|..+|+++++..+...
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 7 3344778888888888999999999999998733443 34666667777788999999999999999765544
Q ss_pred hHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHhC
Q 037404 516 NYTMLSNIFA-----ATG-----------DWNKVANVRLQMKKT 543 (605)
Q Consensus 516 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 543 (605)
+|...+..-. +.| ....|..+++++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 6777766544 444 567888899888653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-12 Score=116.90 Aligned_cols=326 Identities=15% Similarity=0.099 Sum_probs=243.9
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-cHHHHHHHHHhCC
Q 037404 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV-PWTIIISGYAEKG 290 (605)
Q Consensus 212 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~ 290 (605)
.|...+-.....+-+.|....|...|......-+..|.+.+....-.-+.+.+..+...+...... .=-.+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344444445555667788888888888777655666666665555555555555544444332111 1112344555566
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChHH-HHH
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK--CNTNVCNALVDMYAKCGSLDN-AMS 367 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-A~~ 367 (605)
..+++..-.......|++.+...-+....+.....|+++|+.+|+++.+..+- -|..+|+.++-.--.+.++.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 78888888888888887766666666777778889999999999999887431 256777776643333222222 222
Q ss_pred HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC
Q 037404 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446 (605)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (605)
++ .+-+--+.|..++..-|.-.++.++|...|++..+. .|.. ..|+.+..-|....+...|++-++.+++ -.+-
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~ 396 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPR 396 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCch
Confidence 22 233335567778888899999999999999999985 4544 5677777889999999999999999987 4556
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
|-..|-.|+++|.-.+...-|+-+|+++ ..+| |...|.+|+.+|.+.++.++|+..|+++......+..++..|+++|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 8889999999999999999999999998 4444 6789999999999999999999999999998877888999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 037404 525 AATGDWNKVANVRLQMKK 542 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~ 542 (605)
.+.++.++|.+.+++.++
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999999887
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-11 Score=113.51 Aligned_cols=375 Identities=14% Similarity=0.109 Sum_probs=266.2
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN-IVSWSTMVWGYSKDG 259 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~ 259 (605)
.|...+-...-.+.+.|....|+..|...+..-+..|.+-+....-..+.+.+..+...+...+ ...--.+..++-...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 4554455555566788999999999988865444555554444444445554444443333222 222234455666666
Q ss_pred CHHHHHHHHhhCCCCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCchHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKV 333 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~ 333 (605)
+.+++..-.+.....+... -+....+.-...++++|+.+|+++.+... --|..+|..++-.-.....+.---+.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 7777776666665543332 12233345567899999999999998731 12456777666543332222211111
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
...+. +--+.+...+.+.|.-.++.++|...|+...+- ....|+.|.+-|...++...|++-+++.++-+ +-
T Consensus 322 v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 322 VSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR 396 (559)
T ss_pred HHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence 11222 223566777888899999999999999987744 45789999999999999999999999999853 44
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLG 488 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 488 (605)
|-..|..|.++|.-.+...=|+-+|+++.. --+.|...|.+|+++|.+.++.++|.+.|... .-+.+...+..|+.
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 778999999999999999999999999976 34557899999999999999999999999988 22345678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-------cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEE
Q 037404 489 ACRKHNAVELAEEVLDCLIRL-------KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (605)
.|.+.++.++|..++++.++. .|....+...|+.-+.+.+++++|..+..+...-
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------ 536 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------ 536 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------
Confidence 999999999999999998883 2333445566888899999999999987666541
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHhh
Q 037404 562 EFSVCDQLHPKSEQIYQMINTLGKDLK 588 (605)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (605)
.+..++..++++++.+.+.
T Consensus 537 --------~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 --------ETECEEAKALLREIRKIQA 555 (559)
T ss_pred --------CchHHHHHHHHHHHHHhcC
Confidence 4566777888877766543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-12 Score=124.71 Aligned_cols=246 Identities=10% Similarity=0.076 Sum_probs=123.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLI--SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555444432 23322111 12334444455555555554444443 2234444445555555555555
Q ss_pred HHHHHhcCCCC---Ch--------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 037404 365 AMSVFNGMTKK---DL--------VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433 (605)
Q Consensus 365 A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (605)
|.+++..+.+. +. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55444444321 11 12222222222333444444444444322 23345555566666666666666666
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
.+++..+ .+|+.... ++.+....++.+++++.+++. +..| |+..+..+...|.+.|++++|.+.|+++.+..|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6666644 23333221 222233446666666666665 2233 344556666777777777777777777777666
Q ss_pred CCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 512 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++. .+..++.++.+.|+.++|.+++++...
T Consensus 360 ~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 643 355667777777777777777766654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-12 Score=112.92 Aligned_cols=264 Identities=12% Similarity=0.093 Sum_probs=150.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
|.+-|...|-++.|+.+|..+.+.+ ..-......++..|....+|++|+.+-..+.+.+..+.. -.+.+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~---~eIAqf------ 182 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR---VEIAQF------ 182 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch---hHHHHH------
Confidence 4444555555666666665555432 122334444555555555555555555544443322111 001111
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
|.-+...+....+.+.|..++.+..+.+ |+. ..--.+.+.....|++..|++.++.+.+
T Consensus 183 ------------------yCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 183 ------------------YCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred ------------------HHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 2223344444566666666666666542 322 2223344556666777777777776665
Q ss_pred hhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
.+..--..+...|..+|...|+.++....+.++ ...+.......+........-.+.|...+.+-++.+|.-...+..
T Consensus 243 -Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 243 -QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred -hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 233333455666777777777777777766665 334444444555555555555666777777767667775555544
Q ss_pred HHHHHHhc--CChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHH
Q 037404 520 LSNIFAAT--GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576 (605)
Q Consensus 520 l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (605)
+-.-+... |...+-...+..|....++..|.+.....+-..+.+.+.|......+.+
T Consensus 322 ~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPsC~~W~Ti 380 (389)
T COG2956 322 MDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPSCRAWETI 380 (389)
T ss_pred HHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCCccccccc
Confidence 44444433 5588888899999988888888777777777777788777666555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=127.51 Aligned_cols=278 Identities=13% Similarity=0.032 Sum_probs=220.5
Q ss_pred cCCChHHHHHHHHhCCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--HH--HHHHHHHhCCChHHHHHH
Q 037404 226 KAGEMNLAFELFEKIPHR--NIVS-WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP--WT--IIISGYAEKGMAKEAARL 298 (605)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~ 298 (605)
..|+++.|.+.+....+. ++.. |.....+..+.|+++.|.+.+.++.+.++.. .. .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 379999999998876543 2333 4344555689999999999999987655444 21 336688899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChh-------HHHHHHHHHHhcCChHHHHHHHhc
Q 037404 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN-------VCNALVDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 371 (605)
++++.+.. +-+...+..+...|.+.|+++.+..++..+.+.+..++.. .|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999864 3356777888899999999999999999999887553321 233334444455667777888887
Q ss_pred CC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCch
Q 037404 372 MT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448 (605)
Q Consensus 372 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 448 (605)
+. +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|.
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 76 457888999999999999999999999998884 4555322 23344566999999999999987 556677
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
..+..+...+.+.|++++|.+.|+++ ...|+...+..+...+.+.|+.++|.+++++.+...
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 78899999999999999999999998 778999999999999999999999999999998753
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-11 Score=115.39 Aligned_cols=259 Identities=14% Similarity=0.007 Sum_probs=210.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
....-+...+++.+..++.....+.. +++...+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 34455667899999999999998874 5666666666778888888877777767777654 446778888988888899
Q ss_pred ChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 361 SLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 361 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
+..+|++.|.+...- -...|-.+..+|+-.|..|+|+..+...-+. ++-....+..+.--|.+.++.+.|.++|..
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999987643 3479999999999999999999999887763 122222333344458889999999999999
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP--------VEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
+.. -.+.|+...+-+.-.....+.+.+|..+|+... ..+ -..+++.|+.+|.+.+.+++|+..+++++.
T Consensus 406 A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 406 ALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 965 445577788888888888999999999998761 111 345788999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 509 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+.|.++.++..++-+|...|+++.|++.|.+..-..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=129.75 Aligned_cols=277 Identities=12% Similarity=0.046 Sum_probs=209.0
Q ss_pred CCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCchHHHHHH
Q 037404 259 GDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKV 333 (605)
Q Consensus 259 ~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~ 333 (605)
-+..+|...|..+...-.-+ ...+.++|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+. -+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 45678888888855432222 35678889999999999999999887531 12345666665443321 12222
Q ss_pred H-HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037404 334 H-ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409 (605)
Q Consensus 334 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 409 (605)
+ +.+.+.. +..+.+|-++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 2233322 446789999999999999999999999988744 446788888888889999999999998765 44
Q ss_pred CCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHH
Q 037404 410 PDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTL 486 (605)
Q Consensus 410 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l 486 (605)
|.. ..|..+...|.+.++++.|+-.|+++.+ --+-+......++..+.+.|+.++|+++++++ .. +.|+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 544 4567778889999999999999999866 23335667777888899999999999999988 32 3345555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+..+...+++++|.+.++++.+.-|++..++..++.+|.+.|+.+.|+.-+--+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6777888999999999999999999999999999999999999999999888887754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=129.37 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=200.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHH
Q 037404 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF--KCNTNVCNALVDMYAKCGSLDNAM 366 (605)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 366 (605)
.-+..+|+..|.+..++ +.-.......+..+|...+++++++++|+.+.+... ..+..+|.+.+--+-+.-.+..--
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 34578999999995554 344446667888999999999999999999987542 236677887775544322222222
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
+-+-.+-+..+.+|.++..+|.-+++++.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+.++. +.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~ 485 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VD 485 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CC
Confidence 222233355789999999999999999999999999988 466 567888888888889999999999998865 22
Q ss_pred C-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 446 P-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 446 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
| +-..|..++-.|.++++++.|+-.|+++ .+.|. .+....++..+.+.|+.++|+++++++..++|.++-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 2 3345556788899999999999999998 66665 5577778888999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 037404 523 IFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 523 ~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++...+++++|...++++.+.-
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999999853
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-11 Score=119.34 Aligned_cols=472 Identities=13% Similarity=0.078 Sum_probs=300.3
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 037404 36 LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ----DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV 111 (605)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 111 (605)
++..+...|+.|+..+|.++|..||..|+.+.|- +|..|. ..+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3778888999999999999999999999999998 888776 346667899999988888887775
Q ss_pred CCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccC--CCCeehHHHH
Q 037404 112 FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG--ERDIVSWNSM 189 (605)
Q Consensus 112 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~--~~~~~~~~~l 189 (605)
.|-+.||..|+.+|+..||+..-..+-+.+.. +...+...| .-.....++..+. ......-...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~G--vgs~e~~fl~k~~c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHG--VGSPERWFLMKIHCCPHSLPDAENA 145 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhc--cCcHHHHHHhhcccCcccchhHHHH
Confidence 67889999999999999998773333332222 223333444 3333333333321 1111112234
Q ss_pred HHHHHhCCChhHHHHHHhhcCC--CCcchHHHHHHHHHcC-CChHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHH
Q 037404 190 IAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKA-GEMNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDMEMAK 265 (605)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 265 (605)
+....-.|-++.+++++..+.. .+. ++..+++-+... ..+++-..+-+...+ +++.++..++.+-...|+.+.|.
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 4445566778888888877722 111 222234444332 234444444444444 89999999999999999999999
Q ss_pred HHHhhCCCCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH----------
Q 037404 266 LLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM---------- 331 (605)
Q Consensus 266 ~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~---------- 331 (605)
.++.+|.+.+... |..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|....+.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 9999999887654 4444444 7888999999999999999999999988777666633211110
Q ss_pred -HHHHHHH-------------------------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------Chh
Q 037404 332 -KVHASIN-------------------------KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-------DLV 378 (605)
Q Consensus 332 -~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~ 378 (605)
.++..+. =.|+.....+|...++ ...+|+-+..+.+...+..| ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 0111110 0233333344443333 22367777777766655532 444
Q ss_pred HHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCCH------------------------
Q 037404 379 SWNAMLYGLAMHG----------------------QGEKALGLFSRMKDEGFGPDK------------------------ 412 (605)
Q Consensus 379 ~~~~l~~~~~~~~----------------------~~~~A~~~~~~m~~~g~~p~~------------------------ 412 (605)
.|..++.-|.+.- ...+..+++... .||.
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhh
Confidence 5544444433211 111111111111 2221
Q ss_pred ----HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC-----CCCCHHHH
Q 037404 413 ----YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-----VEPNAIIW 483 (605)
Q Consensus 413 ----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~ 483 (605)
..-+.++..|++.-+..++...-+.... .-+ ...|..|++.++...+.+.|..+.++.. +.-|..-+
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 1123334444444444444444333333 111 2678899999999999999999999883 22345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLK---GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
..+.....+.+....+..++++..+.- |........+.......|+.+.-.++.+-+...|...
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 778888889999999999999888742 3334556667777788899999888888888888755
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-12 Score=123.49 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCchHHHHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG--TLISILAACAESGLLGLGMK 332 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 332 (605)
.|+++.|.+.+.+..+..+.+ +-.........|+++.|...+.+..+. .|+.. .-......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444433322211 222233344445555555555554432 12221 12222444444555555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHH----HHHHHHHHcCChHHHHHHHHHHHH
Q 037404 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWN----AMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
.++.+.+.. +-++.+...+...+.+.|++++|.+.+..+.+. +...+. .........+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555554443 223344445555555555555555555444421 111111 001111222222222333333333
Q ss_pred CCC---CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHH--HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037404 406 EGF---GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH--YGCMIDLLGRSGRLKEALRLVQSM-PVEPN 479 (605)
Q Consensus 406 ~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 479 (605)
... +.+...+..+...+...|+.++|.+.+++..+. .+.+... ...........++.+.+.+.+++. ...|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 211 124455555556666666666666666666552 1112110 111111122335566666666555 22333
Q ss_pred -H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 480 -A--IIWGTLLGACRKHNAVELAEEVLD--CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 480 -~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+ ....++++.+.+.|++++|.+.|+ .+.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 455567777777777777777777 35555555433 55777777777777777777776544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-11 Score=119.72 Aligned_cols=279 Identities=11% Similarity=-0.007 Sum_probs=184.2
Q ss_pred cCCChHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc----cHHHHHHHHHhCCChHHHHHH
Q 037404 226 KAGEMNLAFELFEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV----PWTIIISGYAEKGMAKEAARL 298 (605)
Q Consensus 226 ~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~ 298 (605)
..|+++.|.+.+.+..+ |+ ...+-....++...|+++.|.+.+.+..+..+. ..-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35566666665554432 22 222334445566666777776666664322111 122235566667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH---H----hcCChHHHHHHHhc
Q 037404 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY---A----KCGSLDNAMSVFNG 371 (605)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~~ 371 (605)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..........-..++ . .....+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77777753 2244556666777777777777777777777765432222211111111 2 22233455555555
Q ss_pred CCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 372 MTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT--F-VGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 372 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
... .++..+..++..+...|++++|.+++++..+. .|+... + ..........++.+.+.+.++...+. .+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 553 47888899999999999999999999999986 344432 1 11122234457888999999888773 33
Q ss_pred Cch--HHHHHHHHHhhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 446 PQV--EHYGCMIDLLGRSGRLKEALRLVQS--M-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 446 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
-|+ ....+++..+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344 6777999999999999999999994 3 66899998999999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=133.20 Aligned_cols=251 Identities=13% Similarity=0.143 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-C----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 250 TMVWGYSKDGDMEMAKLLFDRMP-A----KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 250 ~l~~~~~~~~~~~~a~~~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
.+...+.+.|++++|.+++++.. . .+..-|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566667777777777774422 2 12222555666666677788888888877765422 34445555555 677
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-----KKDLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+++++|.+++....+.. +++..+...+..+.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888877776654432 355666777788888888888888887743 34667888888899999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-C
Q 037404 400 FSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-V 476 (605)
Q Consensus 400 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~ 476 (605)
+++..+. .| |......++..+...|+.+++.+++....+. .+.++..+..++.+|...|+.++|+..+++. . .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999885 56 4667888888999999999999999888773 3566778889999999999999999999988 3 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
+.|+.+...++.++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 34677888899999999999999999888765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-10 Score=107.63 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=175.7
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 037404 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365 (605)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 365 (605)
+.-.|+...|...|+..+.....++. .|..+...|....+.++..+.|..+.+.+. .++.+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 34578999999999999986433332 277778889999999999999999998774 4778888888999999999999
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 366 MSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 366 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
..-|++...- +...|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+.+++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999988744 5566777777777889999999999999886 455678899999999999999999999999876
Q ss_pred CCCCc---------hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 443 GILPQ---------VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 443 ~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
+.|. +.+...++..- -.+++..|.+++.++ .+.|- ...+..|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2332 22233333333 348999999999998 66665 4588999999999999999999999988763
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-09 Score=101.29 Aligned_cols=508 Identities=12% Similarity=0.134 Sum_probs=282.0
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHh-CCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 20 KLQNLHKCKNLNQTKQLFAQIIKL-DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
+++++-..+++...+..|+..+.. .+.-...+|.-.+...-..|-++.+.+++++..+-++..-+--|..+++.+++++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHH
Confidence 444444555555555555555543 2333345555555555555555666666665555444445555666666666666
Q ss_pred HHHHHHHHHhCC------CCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCC--CCCc--chhhHHHHHHHhcCCCCh
Q 037404 99 AFRVFLDMQEKG------VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY--FGDI--FVPNSLIDSYSKCGVVGV 168 (605)
Q Consensus 99 a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~ 168 (605)
|.+.+...+... -+.+...|+-+-...++..+.-....+ +.+.+.|+ -+|. ..|.+|.+-|.+.| .+
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g--~~ 264 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSG--LF 264 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhh--hh
Confidence 666665554321 111222333333333332222211111 11112221 1222 35666667777777 77
Q ss_pred HHHHHHHhccCCC--CeehHHHHHHHHHhC----------------CC------hhHHHHHHhhcCCC------------
Q 037404 169 SLAKKLFMSMGER--DIVSWNSMIAGLVKG----------------GE------LSEARRLFDEMPER------------ 212 (605)
Q Consensus 169 ~~a~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~~~~~------------ 212 (605)
+.|..++++.... .+.-|+.+.+.|+.- |+ ++-.+.-|+.+...
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 7777776665431 222233333333211 11 11111112221100
Q ss_pred ---CcchHHHHHHHHHcCCChHHHHHHHHhCCC---C------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--
Q 037404 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPH---R------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP-- 278 (605)
Q Consensus 213 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 278 (605)
+..+|..-. -...|+..+-...|.++.+ | -...|..+...|-..|+++.|..+|++..+-+...
T Consensus 345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 011111111 1123334444444443321 1 12468888999999999999999999987654443
Q ss_pred -----HHHHHHHHHhCCChHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHccCchHHHHHHHHH
Q 037404 279 -----WTIIISGYAEKGMAKEAARLYDQMEEAGLK----------P-------DDGTLISILAACAESGLLGLGMKVHAS 336 (605)
Q Consensus 279 -----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (605)
|......-.+..+++.|+++++....---. | +...|...+..-...|-++....+|+.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 555666666788899999988877542111 1 111233334444456778888888888
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHHCCC
Q 037404 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT----KKDL-VSWNAMLYGLAM---HGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~ 408 (605)
+.+..+- ++.+.-.....+-...-++++.++|++-. .|++ ..|+..+.-+.+ ....+.|..+|++..+ |+
T Consensus 503 iidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 8887654 33333334444556667889999998765 3444 467776655443 3468999999999998 77
Q ss_pred CCCHHHHHHHH--HHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 037404 409 GPDKYTFVGVL--CACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIW 483 (605)
Q Consensus 409 ~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 483 (605)
+|...-+..|+ ..-.+-|....|..+++++.. ++++. ..+|+.+|.--...=-+.....+|+++ ..-|+...-
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 77654332232 333456889999999999876 55554 457787776544433334444555554 223444332
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhhc-CC-CCchHHHHHHHHHhcCChHHHHHH
Q 037404 484 ---GTLLGACRKHNAVELAEEVLDCLIRLK-GS-DPGNYTMLSNIFAATGDWNKVANV 536 (605)
Q Consensus 484 ---~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~ 536 (605)
.-+...-.+.|..+.|+.+|....++. |. ++..|...=..-.+.|+-+.-.+.
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 233455567899999999999998885 42 566788888888889994444333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-10 Score=101.78 Aligned_cols=250 Identities=13% Similarity=0.025 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC--Ccc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAK--TLV--PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~--~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 328 (605)
.+.-..|+.+.+-+++.+..+. +.. ..-...+.....|++..|..-+.++.+.+ +-+.........+|.+.|++.
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~ 204 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQ 204 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHH
Confidence 3334444444444444444332 111 13333444445555555555555555432 223334444455555555555
Q ss_pred HHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037404 329 LGMKVHASINKYRFKCN-------TNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 329 ~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
....++..+.+.+.-.+ ..++..+++-....+..+.-...++... +.++..-.+++.-+.+.|+.++|.+
T Consensus 205 ~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 205 ALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 55555555555443322 2344555555555555555555666665 3456677777777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE 477 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 477 (605)
+..+..+++..|+.. ..-.+.+-++...-++..+.-.+. .+-++..+.+|+..|.+.+.+.+|.+.|+.. +..
T Consensus 285 ~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 285 IIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 888887777666622 222455667777666666666663 3334467777888888888888888888766 667
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
|+..+|+.+..++.+.|+..+|.++.++++..
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888888888888777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-10 Score=102.70 Aligned_cols=279 Identities=14% Similarity=0.153 Sum_probs=215.2
Q ss_pred hcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 037404 257 KDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333 (605)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 333 (605)
..|+|.+|+++..+-.+.+..+ |..-+.+--+.|+.+.+-.++.+.-+....++.....+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4689999999988866555544 5555666778899999999999998854355566677777888999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-----------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 037404 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD-----------LVSWNAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
...+.+.+. .++.+.....++|.+.|++.....++.++.+.. ..+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 988888764 467888899999999999999999999887542 23667777666666666666667776
Q ss_pred HHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCH
Q 037404 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNA 480 (605)
Q Consensus 403 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 480 (605)
...+ .+-++..-..++.-+.+.|+.++|.++..+..+ .+..|+. ...-.+.+-++...-++..++. ..+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 5543 455666667778888999999999999999888 4666662 2222345666766666666554 223345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+.+|+..|.+++.+.+|..+++.+++..|+ ...|..+++++.+.|+..+|.+..++..-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78889999999999999999999999987766 567999999999999999999999988753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-11 Score=110.25 Aligned_cols=198 Identities=15% Similarity=0.059 Sum_probs=162.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34567777888888899999988888665 3356677888888999999999999999988764 3355677778888
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 499 (605)
+...|++++|...++.+......+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998873222334567777888999999999999999987 3334 466788889999999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-10 Score=101.61 Aligned_cols=279 Identities=11% Similarity=0.134 Sum_probs=181.0
Q ss_pred CCChhHHHHHHhhcCCCCcchHH---HHHHHHHcCCChHHHHHHHHhCCC-CCh------hHHHHHHHHHHhcCCHHHHH
Q 037404 196 GGELSEARRLFDEMPERDAVSWN---TILDGYAKAGEMNLAFELFEKIPH-RNI------VSWSTMVWGYSKDGDMEMAK 265 (605)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~a~ 265 (605)
..+.++|.++|-+|.+.|+.|+. ++.+.|.+.|..|.|+++...+.+ ||. .....|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45677777777777655555443 466777778888888888776654 333 23456677788899999999
Q ss_pred HHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC
Q 037404 266 LLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342 (605)
Q Consensus 266 ~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 342 (605)
.+|..+.+.+... .-.|+..|-...+|++|+++-+++.+.+..+...-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----------------------------
Confidence 9999987744333 677888999999999999999999887655443221
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 343 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
...|--|...+....+.+.|...+.+..+. .+..--.+.+.+...|++..|.+.++...+.+..--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 112333444444555666666666655422 23333445566777788888888888777765444445667777
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhc---CC
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ-SMPVEPNAIIWGTLLGACRKH---NA 495 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~~~~---g~ 495 (605)
.+|...|+.++....+..+.+. .+....-..+...-....-.+.|..++. .+.-+|+...+..++...... |.
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 8888888888888888777662 3444444455554444555555555543 445678888887777665432 34
Q ss_pred HHHHHHHHHHHHh
Q 037404 496 VELAEEVLDCLIR 508 (605)
Q Consensus 496 ~~~A~~~~~~~~~ 508 (605)
..+....++.++.
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 5555555555554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=115.31 Aligned_cols=438 Identities=13% Similarity=0.041 Sum_probs=256.3
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHH
Q 037404 77 DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156 (605)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (605)
.||.++|..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|...+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 566777777777777777777776 7777766666666667777777766666666554 5566677777
Q ss_pred HHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc-CCC-CcchHHHHHHHHHcCCChHHHH
Q 037404 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-PER-DAVSWNTILDGYAKAGEMNLAF 234 (605)
Q Consensus 157 ~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~ 234 (605)
..+|...| |+.. .+..++ ....++..+...|....-..++..+ ..| ....-..++......|-++.+.
T Consensus 90 l~ayr~hG--Dli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 90 LKAYRIHG--DLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred HHHHHhcc--chHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 77777777 6554 111111 2233444555566655555555554 111 1111123444555667788888
Q ss_pred HHHHhCCC--CCh-hHHHHHHHHHH-hcCCHHHHHHHHhhCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 037404 235 ELFEKIPH--RNI-VSWSTMVWGYS-KDGDMEMAKLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309 (605)
Q Consensus 235 ~~~~~~~~--~~~-~~~~~l~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 309 (605)
+++..+.. .+. ... .++-.. ....+++-........+ +++.+|.+++..-...|+.+.|..++.+|.+.|++.
T Consensus 160 kll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 88877653 111 111 132222 23345555555555554 677789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh-----------cCCC----
Q 037404 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN-----------GMTK---- 374 (605)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------~~~~---- 374 (605)
+.+-|-.++-+ .++...++.+++.|...|+.|+..++.-.+..+..+|....+..... .+..
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 98887777766 88888999999999999999999998877766666444322211110 0000
Q ss_pred -------------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHhcccC
Q 037404 375 -------------------------KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGP-DKYTFVGVLCACTHAG 426 (605)
Q Consensus 375 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p-~~~~~~~ll~~~~~~g 426 (605)
....+|...+. ...+|.-++...+...|..-- ..+ +...|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 01112222222 122466666666666554311 122 2233444333332211
Q ss_pred C----------------------HHHHHHHHHHhHHh---------------hCCCC-------chHHHHHHHHHhhhcC
Q 037404 427 F----------------------IDKGVQYFYSMERD---------------YGILP-------QVEHYGCMIDLLGRSG 462 (605)
Q Consensus 427 ~----------------------~~~a~~~~~~~~~~---------------~~~~~-------~~~~~~~l~~~~~~~g 462 (605)
. ..+..++....... ..+.| -...-+.++..+++.-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 0 00111111000000 00000 0112233444455555
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG---SDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 463 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+..+++...++....--...|..++.-+..+.+.+.|..+.++....+. -+-..+..+.+++.+.+...++..++++
T Consensus 474 n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 5555554433331111124567788888888888888888888766432 2334577889999999999999999999
Q ss_pred HHh
Q 037404 540 MKK 542 (605)
Q Consensus 540 ~~~ 542 (605)
+.+
T Consensus 554 ~ks 556 (1088)
T KOG4318|consen 554 DKS 556 (1088)
T ss_pred hhH
Confidence 987
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-09 Score=101.67 Aligned_cols=280 Identities=10% Similarity=-0.004 Sum_probs=216.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
.+........+-+...+++.+..++++.+.+.++.. +..-|.++...|+..+-..+=.++.+. .+-...+|-.+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 345556666677788899999999999887665543 555666888888888888888888875 3445678888888
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 396 (605)
-|...|+.++|.++|......+.. -...|-.+...|+-.|+.|+|+..+....+ ..-.-+--+.--|.+.++...|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 888999999999999988765432 245688889999999999999988875542 1111122234457788999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh-----CCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 397 LGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY-----GILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 397 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
.+.|.+... +.| |+...+-+.-.....+.+.+|..+|+.....- .......+++.|+..|.+.+++++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998876 455 56677777767778899999999999887311 0112355789999999999999999999
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 471 VQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 471 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
+++. -.+.+..++.+++-.|...|+++.|...|.+++.++|++..+-..|..+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9987 3456788999999999999999999999999999999997776666655433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-09 Score=99.14 Aligned_cols=519 Identities=12% Similarity=0.140 Sum_probs=317.0
Q ss_pred CCCcchHHHHHHHhccCChhHHHHHhcccC-----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 037404 47 RDPYIAPKLISSLALCRQMGLAIKVFNDIQ-----DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121 (605)
Q Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 121 (605)
.-+.++...++.+.++|++..-++.|++.. ......|...+.-....+-++.+.++|++.++. .| ..-.--
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHH
Confidence 446677777888888999999999998764 356677998999888999999999999999875 33 335566
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhC------CCCCcchhhHHHHHHHhcCCC-ChHHHHHHHhccCC--CC--eehHHHHH
Q 037404 122 LKACNGKNWFHLVQMIHALIYKCG------YFGDIFVPNSLIDSYSKCGVV-GVSLAKKLFMSMGE--RD--IVSWNSMI 190 (605)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~-~~~~a~~~~~~~~~--~~--~~~~~~li 190 (605)
+..+++.+++++|.+.+...+... -+.+-..|..+.+..++..+. ..-....+++.+.. +| ...|+.|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 777888999999999888876432 133445666666666554310 11223444554443 22 34799999
Q ss_pred HHHHhCCChhHHHHHHhhcCCC--CcchHHHHHHHHHc----------------CCC------hHHHHHHHHhCCCC---
Q 037404 191 AGLVKGGELSEARRLFDEMPER--DAVSWNTILDGYAK----------------AGE------MNLAFELFEKIPHR--- 243 (605)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~----------------~~~------~~~a~~~~~~~~~~--- 243 (605)
+.|++.|.++.|..+|++.+.. ...-|..+.++|+. .|+ ++-...-|+.+...
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 9999999999999999988432 22233333333332 111 12222223333221
Q ss_pred ------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCccc--HHHHHHHHHhCCChHHHHHHHHHH
Q 037404 244 ------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPA-------KTLVP--WTIIISGYAEKGMAKEAARLYDQM 302 (605)
Q Consensus 244 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m 302 (605)
++..|..-+. +..|+..+-...+.+..+ .+... |..+.+.|-..|+.+.|..+|.+.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 2222332222 223455555555554321 12111 888889999999999999999888
Q ss_pred HHcCCCCC---HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----------CC------ChhHHHHHHHHHHhcCCh
Q 037404 303 EEAGLKPD---DGTLISILAACAESGLLGLGMKVHASINKYRF-----------KC------NTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 303 ~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~ 362 (605)
.+-..+-- ..+|......-.+..+++.|..+.+.+..... ++ +..+|...++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 76432211 12344444444556677777777776643211 11 233444455555566777
Q ss_pred HHHHHHHhcCCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc---ccCCHHHHHHHH
Q 037404 363 DNAMSVFNGMTKKDLVSWN---AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACT---HAGFIDKGVQYF 435 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---~~g~~~~a~~~~ 435 (605)
+....+|+++.+--+.|=. .....+-.+.-++++.+++++-+..--.|+.. .|+..+.-+. ....++.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7777788777643222211 12222334556778888887655543345543 4554443332 344789999999
Q ss_pred HHhHHhhCCCCchH--HHHHHHHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 436 YSMERDYGILPQVE--HYGCMIDLLGRSGRLKEALRLVQSM--PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 436 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+++.+ +.+|... .|......--+.|-...|+++++++ ++++. ...|+..+.-....=-+..-+.+|+++++.
T Consensus 574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99998 7777533 2333333344568899999999998 34433 236777665444333345567899999998
Q ss_pred cCCCCc--hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHH
Q 037404 510 KGSDPG--NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580 (605)
Q Consensus 510 ~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 580 (605)
-|++-. ...-.+++-.+.|..+.|..+|....+...+...+.-| ..|+.| ...|++-+.+.++|
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW----~twk~F---EvrHGnedT~keML 717 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW----DTWKEF---EVRHGNEDTYKEML 717 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH----HHHHHH---HHhcCCHHHHHHHH
Confidence 776543 34456777889999999999998887754322222222 233333 23466655555555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-09 Score=102.72 Aligned_cols=389 Identities=13% Similarity=0.058 Sum_probs=255.8
Q ss_pred CCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcCC----C-Ccch
Q 037404 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMPE----R-DAVS 216 (605)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~ 216 (605)
.++.|..+|..|.-+..++| ++..+.+.|++... .....|+.+...+...|.-..|+.+++.... | |...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g--~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCG--QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 35567788888888889999 99999999988764 2445788899999999999999999887732 3 2333
Q ss_pred HHHHHHHHHc-CCChHHHHHHHHhCCC--------CChhHHHHHHHHHHhc-----------CCHHHHHHHHhhCCCCCc
Q 037404 217 WNTILDGYAK-AGEMNLAFELFEKIPH--------RNIVSWSTMVWGYSKD-----------GDMEMAKLLFDRMPAKTL 276 (605)
Q Consensus 217 ~~~ll~~~~~-~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 276 (605)
+...-..|.. .+.+++++.+-.++.. -....|..+.-+|... ....++.+.+++..+.++
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333344443 4555555555433322 2334555555555422 124556677777654333
Q ss_pred cc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc-CCCCChhHHHHH
Q 037404 277 VP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNAL 352 (605)
Q Consensus 277 ~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 352 (605)
.. -..+.--|+..++.+.|+...++..+-+..-+...|..+...+...+++..|+.+.+..... |. |......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 33 22233456677889999999999988766778888888888888889999999888776532 21 11111111
Q ss_pred HHHHHhcCChHHHHHHHhcC--------------------------C--C---CC-hhHHHHHHHHHHHcC---ChHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGM--------------------------T--K---KD-LVSWNAMLYGLAMHG---QGEKAL 397 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~--------------------------~--~---~~-~~~~~~l~~~~~~~~---~~~~A~ 397 (605)
++.-..-++.+++......+ . . .+ +.++..+.......+ .++..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 11122234444443322211 1 0 01 122222221111110 11111
Q ss_pred HHHHHHHHCCCCC--C------HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 398 GLFSRMKDEGFGP--D------KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 398 ~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
+...-+.| + ...|......+.+.+..++|...+.++.. -.+.....|...+..+...|..++|.+
T Consensus 633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 11111222 2 12344555678888999999988888866 455567788888889999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 470 LVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEE--VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 470 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.|... .+.|+ +.+..+++..+.+.|+...|.. ++..+++.+|.++.+|+.++.++.+.|+.++|.+-|+...+...
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99887 56666 5588899999999998888888 99999999999999999999999999999999999999988643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-08 Score=90.76 Aligned_cols=281 Identities=10% Similarity=0.015 Sum_probs=195.0
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 037404 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT-LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352 (605)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 352 (605)
.|......+...+...|+.++|+..|.+.+.. .|+..+ .....-.+...|+.+....+...+.... +.+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 34444677778888888888888888887763 444332 1222223456677776666665554322 1122233333
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFI 428 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 428 (605)
+......++++.|+.+-++..+. +...+-.-...+...+++++|.-.|+..+. +.| +..+|..|+.+|...|..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 44455677888888888876643 444555555678888999999999988776 354 668899999999999999
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHH-HHh-hhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 037404 429 DKGVQYFYSMERDYGILPQVEHYGCMI-DLL-GRSGRLKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
.+|.-.-....+ -++.+..+...+. ..+ -.-..-++|.+++++. .++|+-. ..+.+...|...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 998887777766 3455555555543 222 2233457888888887 6778744 66777888889999999999999
Q ss_pred HHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 037404 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLG 584 (605)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 584 (605)
+.+...|+ ...+..|++++.....+.+|.+.|..+... +|+.+...+=+..++
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHH
Confidence 99987776 457889999999999999999999888763 556666666676666
Q ss_pred HHhh
Q 037404 585 KDLK 588 (605)
Q Consensus 585 ~~~~ 588 (605)
++++
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 6554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-08 Score=93.80 Aligned_cols=437 Identities=14% Similarity=0.105 Sum_probs=255.2
Q ss_pred HHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhH--HHHHHHhcCC
Q 037404 88 RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS--LIDSYSKCGV 165 (605)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~ 165 (605)
.-+..+|++++|.....+++..+ +-|...+..-+-+....+.+++|..+.+ ..+.. .+++. +=.+||....
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~---~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGAL---LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchh---hhcchhhHHHHHHHHHc
Confidence 34556677778887777777654 3344455555556667777777764332 22211 11111 3556665444
Q ss_pred CChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHH-HcCCChHHHHHHHHhCCCC-
Q 037404 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGY-AKAGEMNLAFELFEKIPHR- 243 (605)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~- 243 (605)
...++|...++....-+..+...-...+-+.|++++|+++|+.+.+.+...+...+.+- ...+-.-.+. +.+.....
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVP 171 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCC
Confidence 48888888888555555556666677888899999999999998665555444433221 1111111121 33333322
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCC-----ccc-----HHHHHHHHHhCCChHHHHHHHHHHH
Q 037404 244 --NIVSWSTMVWGYSKDGDMEMAKLLFDRM--------PAKT-----LVP-----WTIIISGYAEKGMAKEAARLYDQME 303 (605)
Q Consensus 244 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~-----~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~ 303 (605)
+...+......++..|++.+|+++++.. ...+ +.. --.|...+...|+..+|..+|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2233344455677889999999998876 1111 111 2345566778999999999999998
Q ss_pred HcCCCCCHHHHHHHHH---HHHccCchHH--HHHHHH------------HHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 037404 304 EAGLKPDDGTLISILA---ACAESGLLGL--GMKVHA------------SINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366 (605)
Q Consensus 304 ~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 366 (605)
+.. .+|......+.+ +.....++-. +...++ .+.... ......-+.++.+| .+..+.+.
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r 327 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVR 327 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHH
Confidence 875 455533322222 2222111111 111111 111110 00111112233333 35667777
Q ss_pred HHHhcCCCCC-hhHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH-------
Q 037404 367 SVFNGMTKKD-LVSWNAMLYGL--AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY------- 436 (605)
Q Consensus 367 ~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~------- 436 (605)
++........ ...+..++..+ ++...+.++.+++...-+....-........+......|+++.|.+++.
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 7777766443 23444444432 2233577888888877664322223455566777889999999999998
Q ss_pred -HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 437 -SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-----PVEPNAI----IWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 437 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
.+.+ .+..| .+...+...+.+.++.+.|..++++. ...+... ++.-++..-.+.|+-++|...++++
T Consensus 408 ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 408 SSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 4443 34444 45556777788888766676666655 1112222 3333444456779999999999999
Q ss_pred HhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 507 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
++.+|++..+...++-+|++. +.+.|..+-+.+
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999888765 455566654433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=102.50 Aligned_cols=226 Identities=13% Similarity=0.042 Sum_probs=161.5
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcC
Q 037404 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHG 391 (605)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 391 (605)
..+..+|.+.|-+..|++.++...+.. |-+.+|..|-+.|.+..+++.|+.+|.+-.+ .|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 345555556666666665555554432 3445556666666666677777766665542 23334444566666677
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
+.++|.++++...+.. ..+......+...|.-.++++.|..+|.++.+ .|.. ++..|+.+.-+|.-.+++|-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888888777642 33555566666667777788888888888877 4543 5667777777777888888888877
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 472 QSM---PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 472 ~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
+++ ...|+ ..+|..+.......||+..|.+.|+-++..+|++...+..|+-.-.+.|++++|..+++......+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 766 12233 557888888888899999999999999999999999999999999999999999999998887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-10 Score=109.34 Aligned_cols=230 Identities=15% Similarity=0.175 Sum_probs=153.8
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCChHHHHHHHhcCC--------CCC-
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKY-----RF-KCNT-NVCNALVDMYAKCGSLDNAMSVFNGMT--------KKD- 376 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~- 376 (605)
+...+...|...|+++.|...++...+. |. .|.. ...+.+...|...+++.+|..+|+++. +.+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555555444332 10 1111 122345566666777777766666554 111
Q ss_pred --hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhC--CC
Q 037404 377 --LVSWNAMLYGLAMHGQGEKALGLFSRMKD-----EGFG-PDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYG--IL 445 (605)
Q Consensus 377 --~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~-p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~ 445 (605)
..+++.|..+|.+.|++++|...+++..+ .|.. |... .++.+...|...+++++|..+++...+-.. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 24566666677777777777776666443 1222 2222 356677778899999999999887765322 22
Q ss_pred Cc----hHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 037404 446 PQ----VEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-- 509 (605)
Q Consensus 446 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 509 (605)
++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++++|.++|.+...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 467899999999999999999999877 11222 457788999999999999999999988775
Q ss_pred --cCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 510 --KGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 510 --~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.|++| .+|..|+.+|.+.|++++|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45554 4578899999999999999999999875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-09 Score=112.41 Aligned_cols=242 Identities=14% Similarity=0.083 Sum_probs=178.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 290 GMAKEAARLYDQMEEAGLKPDD-GTLISILAACA---------ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
++.++|...|++..+. .|+. ..+..+..++. ..+++++|...++++.+.+. .+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 3467888999888875 4543 34444443332 23457889999999888763 3677888888899999
Q ss_pred CChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 360 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
|++++|...|++.. +.+...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999876 335678888899999999999999999999985 4543 23334444566789999999999
Q ss_pred HHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q 037404 436 YSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLDCLIRL--- 509 (605)
Q Consensus 436 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 509 (605)
+++.. ..+| ++..+..+..++...|+.++|...+.++ +..|+.. ..+.+...+...| ++|...++++.+.
T Consensus 430 ~~~l~--~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRS--QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHH--hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 99876 2334 4556778888999999999999999987 4455544 4455556667766 4788877777765
Q ss_pred cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|.++. .+..++.-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344443 367778888888888777 8888764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-08 Score=91.83 Aligned_cols=273 Identities=11% Similarity=0.023 Sum_probs=209.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037404 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318 (605)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 318 (605)
..|+.....+..++...|+.++|...|++...-++.+ .....-.+.+.|+.+....+...+.... .-....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4678889999999999999999999999977655544 3334445567899998888888887642 12333333334
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
.......+++.|..+-+..++.+. .+...+-.-...+...|+.++|.-.|+... +-+..+|.-++.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 445567788888888888877653 245556556677889999999999998655 3478999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHh-cccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVL-CAC-THAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
|...-+...+. +..+..+...+. ..| .....-++|..++++... +.|+ ....+.+.+.+...|..+.+..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99988876654 344566665552 233 334456788899888754 5565 4567788899999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 473 SM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 473 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
+. ...||....+.|...+...+.+++|...|..+++++|.+..+..-|
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 87 6789999999999999999999999999999999999987654433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-08 Score=86.97 Aligned_cols=437 Identities=10% Similarity=0.008 Sum_probs=232.6
Q ss_pred HHHHhccCChhHHHHHhcccCCC----CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCH
Q 037404 56 ISSLALCRQMGLAIKVFNDIQDP----DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131 (605)
Q Consensus 56 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 131 (605)
+.-+...+++..|+.+++--... ...+-.++..++...|++++|+.+|..+.+. -.|+......|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 44456677888888888754311 1122234667788899999999999988875 455666666666556667788
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhH-HHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcC
Q 037404 132 HLVQMIHALIYKCGYFGDIFVPNS-LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210 (605)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (605)
.+|+.+-... |+...... |...-.+.+ +-++.....+++.... .--..|.+..-..-.+++|++++.+..
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahkln--dEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLN--DEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhC--cHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776543 34444444 444555566 6666666666655432 233345555555567899999999884
Q ss_pred C--CCcchHHH-HHHHHHcCCChHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHH
Q 037404 211 E--RDAVSWNT-ILDGYAKAGEMNLAFELFEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284 (605)
Q Consensus 211 ~--~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 284 (605)
. |+-...|. +.-+|.+..-++-+.++++--.+ || ....|..+....+.-.-..|++-.+.+.+.....|- .+.
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~ 257 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIE 257 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHH
Confidence 4 33344443 34456666666766666544332 22 233333333333321112222222222111111111 111
Q ss_pred HHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH-----H
Q 037404 285 GYAEK-----GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV-----D 354 (605)
Q Consensus 285 ~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 354 (605)
-+++. .+-+.|++++-.+.+. .|.. -..++.-|.+.+++.+|..+.+.+.- ..|-..+...++ +
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQ 331 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhh
Confidence 11111 2234555555444432 2221 12334445566666666655544321 011111111111 1
Q ss_pred HHHhcCChHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTKK-----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 429 (605)
-......+.-|...|+-.... .+..-.++.+.+.-..++++++..++.+..-- ..|...-..+.++++..|++.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChH
Confidence 111112344455555433321 22334455566666667777777777666542 233333334667777777788
Q ss_pred HHHHHHHHhHHhhCCCCchHHH-HHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHY-GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT-LLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
+|+++|-.+.. ..++ |..+| ..|..+|.++++++-|.+++-++..+.+..++.. +...|.+.+.+--|.+.|+.+.
T Consensus 411 eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 411 EAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 88777766643 1222 33344 4566777777888888777777753334444333 3466777777777777777777
Q ss_pred hhcCC
Q 037404 508 RLKGS 512 (605)
Q Consensus 508 ~~~p~ 512 (605)
.++|.
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 76665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-12 Score=82.33 Aligned_cols=50 Identities=32% Similarity=0.600 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 037404 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127 (605)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 127 (605)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=101.64 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=197.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
+.+.++|.+.|.+.+|...++..++. .|...||..+-.+|.+..++..|..++.+-.+.- +.++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 46888999999999999999988875 6777888889999999999999999998877653 44555566677888889
Q ss_pred CChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
++.++|.++|+...+ .++....++...|.-.++++-|+..++++.+.|+ -+...|..+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999997763 4667777788889999999999999999999985 467888888889999999999999999
Q ss_pred HhHHhhCCCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 437 SMERDYGILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 437 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
++... --.|+ ..+|..+.......|++.-|.+.|+-. ....+...++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98873 33343 567888999999999999999999987 33345679999998899999999999999999999998
Q ss_pred CCchHHHH
Q 037404 513 DPGNYTML 520 (605)
Q Consensus 513 ~~~~~~~l 520 (605)
-.+..+.+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 66554444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-10 Score=93.25 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
+...+.-+|...|++..|..-+++..+. .|+ ..++..+...|.+.|..+.|.+-|+++.. --+-+..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 4455677899999999999999999886 454 46788888899999999999999999976 344467788999999
Q ss_pred hhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 458 LGRSGRLKEALRLVQSMPVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
+|.+|++++|...|+++-..|+ ..+|..++.+..+.|+++.|...++++++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998822232 558888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 037404 534 ANVRLQMKKTRA 545 (605)
Q Consensus 534 ~~~~~~~~~~~~ 545 (605)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-09 Score=97.60 Aligned_cols=162 Identities=19% Similarity=0.110 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCAC 422 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 422 (605)
..+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|...+++.......+ ....+..+..++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 334444444455555555555554333 2233445555556666666666666666665532112 233455566667
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|...+.+... ..+.+...+..+...+...|++++|.+.+++. .. +.+...+..++..+...|+.++|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 777777777777777765 23334556667777777777777777777765 22 234455556666677777788777
Q ss_pred HHHHHHHhhc
Q 037404 501 EVLDCLIRLK 510 (605)
Q Consensus 501 ~~~~~~~~~~ 510 (605)
.+.+.+.+..
T Consensus 224 ~~~~~~~~~~ 233 (234)
T TIGR02521 224 RYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhhC
Confidence 7777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.1e-08 Score=85.89 Aligned_cols=444 Identities=9% Similarity=-0.011 Sum_probs=254.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHH-HhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC
Q 037404 87 IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK-ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165 (605)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (605)
+.-+..+.++..|+.+++.-...+-. .......-+. .+...|++++|...+..+... -.++...+-.|...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg- 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLG- 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHH-
Confidence 55667778888888888766544322 1123333343 356888999988888887763 3556666666666666677
Q ss_pred CChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCCh
Q 037404 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245 (605)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 245 (605)
.+.+|..+-.+.++ ++-.-..+.....+.|+-++-..+-..+.... .--.++.......-++.+|++++.+....+.
T Consensus 106 -~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 106 -QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred -HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 88888887776543 22333444455556666665555544442211 1122333444444567778888877765333
Q ss_pred --hHHH-HHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 246 --VSWS-TMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 246 --~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
...| .+.-+|.+..-++-+.+++..-.+. +...-|.......+.=+-..|..-.+.+.+.+-.. |- .+.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~ 257 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIE 257 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHH
Confidence 2222 2334566666666666655543221 11122332222222222222333333333332111 10 111
Q ss_pred HHHc-----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCC--
Q 037404 320 ACAE-----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ-- 392 (605)
Q Consensus 320 ~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 392 (605)
-.++ -.+-+.|.+++-.+.+.- +..-..|+-.|.+.+++.+|..+.+.+.+..+.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 1111 123355566555444321 23334566678999999999999999987776655444444444443
Q ss_pred -----hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 393 -----GEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 393 -----~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
..-|...|+-.-+.+..-|.. --.++..++.-..++++.+.++..+.. +-...|.. --.+..+++..|++.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~F-n~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDF-NLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchh-hhHHHHHHHHhcChHH
Confidence 233444444333344333221 122334444455678888888888876 33333333 3457899999999999
Q ss_pred HHHHHHhCC--CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 467 ALRLVQSMP--VEPNAIIWG-TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 467 A~~~~~~~~--~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|+++|-... .-.|..+|. .|.++|.+.++.+.|..++-+... ..+....+..++..+.+.+.+--|.+.+..+...
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT-PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 999998872 113455555 456888899999998887754322 1223445667778889999999899999988876
Q ss_pred CCCCC
Q 037404 544 RAQKP 548 (605)
Q Consensus 544 ~~~~~ 548 (605)
.+.|+
T Consensus 491 DP~pE 495 (557)
T KOG3785|consen 491 DPTPE 495 (557)
T ss_pred CCCcc
Confidence 65443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=111.29 Aligned_cols=212 Identities=11% Similarity=-0.009 Sum_probs=164.5
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYA---------KCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 392 (605)
+++++|...+++..+.... +...+..+..+|. ..+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467899999998876532 4556666665544 2345789999998776 3466788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
+++|...|++..+.+ +.+...+..+..++...|++++|...++++.+ ..|+ ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999863 33456788888899999999999999999977 3343 333344455577789999999999
Q ss_pred HhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 472 QSM--PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 472 ~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+++ ...|+ +..+..+..++...|++++|...+.++....|.+......++..|...| ++|...++++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 887 22354 4456777888889999999999999988888888888888888888888 4888888887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=101.05 Aligned_cols=189 Identities=14% Similarity=0.086 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCAC 422 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 422 (605)
..|..+...|...|+.++|...|++.. +.++..|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 345555566666667666666666544 334566677777777777777777777776663 443 45556666666
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|.+.++...+. .|+..........+...++.++|.+.+.+. ...|+...+ .......|+..++
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-
Confidence 6777777777777776552 232221122222234456677777777543 222222211 1222233443332
Q ss_pred HHHHHHH-------hhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 501 EVLDCLI-------RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 501 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..++.+. +..|..+.+|..++.++.+.|++++|+..|+++.+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333332 3345555677777777777777777777777777643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-07 Score=88.79 Aligned_cols=353 Identities=15% Similarity=0.183 Sum_probs=210.5
Q ss_pred hHHHHHHHhcCCCChHHHHHHHhccC--CCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcc--------hHH-----
Q 037404 154 NSLIDSYSKCGVVGVSLAKKLFMSMG--ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV--------SWN----- 218 (605)
Q Consensus 154 ~~l~~~~~~~g~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~----- 218 (605)
.+-|+.|.+.| .+..|.+....-. ..|......+..++.+..-+++|-.+|+++..+|.. .|.
T Consensus 619 laaiqlyika~--~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiel 696 (1636)
T KOG3616|consen 619 LAAIQLYIKAG--KPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIEL 696 (1636)
T ss_pred HHHHHHHHHcC--CchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHH
Confidence 45677888888 6666655543221 234444444555555555555555555555333211 000
Q ss_pred --------------HHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--HHHH
Q 037404 219 --------------TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP--WTII 282 (605)
Q Consensus 219 --------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l 282 (605)
.....+...|+++.|...|-+. .....-+.+......|.+|+.+++.+.+.+..+ |..+
T Consensus 697 arfafp~evv~lee~wg~hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~i 771 (1636)
T KOG3616|consen 697 ARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEI 771 (1636)
T ss_pred HHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHH
Confidence 0011122223333333332211 111223445566677888888888877776666 6677
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 037404 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
...|...|+++.|.++|-+.- .++..+..|.+.|+|+.|.++-.+. .|.......|-+-..-+-..|++
T Consensus 772 adhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred HHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcch
Confidence 778888888888888875432 2344566788888888877765443 23334455566666667778888
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
.+|+++|-.+..|+. .|..|-+.|..+..+++..+-.- ..-..|...+..-+...|+...|...|-+...
T Consensus 841 ~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-- 910 (1636)
T KOG3616|consen 841 AEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-- 910 (1636)
T ss_pred hhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--
Confidence 888888877777754 35677788888887777665322 22235666677778888999998888776644
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHH-----HHH------HHHHHHHhcCCHHHH------------
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI-----IWG------TLLGACRKHNAVELA------------ 499 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-----~~~------~l~~~~~~~g~~~~A------------ 499 (605)
|.+.+.+|...+.+++|-++-+.-+- .|.. .|. +.+..+-++|-.+.|
T Consensus 911 --------~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~ 981 (1636)
T KOG3616|consen 911 --------FKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDF 981 (1636)
T ss_pred --------HHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhh
Confidence 56667777788888888777765421 1111 111 111222233433333
Q ss_pred -HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 500 -EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 500 -~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..+.+-+. ....+.++..++..+...|++++|-+.|-+.++.+.
T Consensus 982 afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 982 AFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 33333222 234456778888889999999999998888887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-07 Score=90.62 Aligned_cols=373 Identities=12% Similarity=0.061 Sum_probs=197.2
Q ss_pred ChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhC
Q 037404 167 GVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKI 240 (605)
Q Consensus 167 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 240 (605)
+.++|......... .+.++|..+.-.+....++++|++.|... ..| |...+..+.-.-++.|+++.........
T Consensus 56 ~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 56 KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44455444443332 24455666666666666666666666655 223 3334444444444555555555444333
Q ss_pred CC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccc--HH------HHHHHHHhCCChHHHHHHHHHHHHcC
Q 037404 241 PH---RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT---LVP--WT------IIISGYAEKGMAKEAARLYDQMEEAG 306 (605)
Q Consensus 241 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~------~l~~~~~~~~~~~~a~~~~~~m~~~~ 306 (605)
.+ .....|..++.++.-.|+...|..+++...+.. +.. +. --.......|..+.|++.+..-...
T Consensus 136 Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 32 223456666666666666666666665543221 111 11 1112334556666666655543322
Q ss_pred CCCCHHHH-HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhcCCCC---ChhHHH
Q 037404 307 LKPDDGTL-ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM-SVFNGMTKK---DLVSWN 381 (605)
Q Consensus 307 ~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~ 381 (605)
..|...+ .+-...+.+.+++++|..++..+...++ -+...|..+..++.+-.+.-++. .+|....+. ....-.
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 1222222 2334455666777777777776666542 12333333444443222222222 444433311 000000
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh-C------------CCCch
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY-G------------ILPQV 448 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~------------~~~~~ 448 (605)
.=++......-.+..-+++..+.+.|+++-...+.++- -.-...+-..++.-.+.... + -+|..
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 00011111122333445566667777655333333322 21111111111111111100 1 14554
Q ss_pred HHH--HHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 449 EHY--GCMIDLLGRSGRLKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 449 ~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
..| ..++..+-+.|+++.|..+++.+ +..|+.. .|..-.+.+...|++++|..+++++.+++..|..+-..-+.-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 444 45778889999999999999987 6667754 5556678888999999999999999999877776666788888
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 037404 525 AATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.++.+.++|.++....-..|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 999999999999988877654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-11 Score=76.92 Aligned_cols=50 Identities=34% Similarity=0.602 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 375 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999998874
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-08 Score=86.77 Aligned_cols=207 Identities=17% Similarity=0.187 Sum_probs=118.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHH---HHHHHcCCChHHHHHHHHhCCCCChhHHH---HHHHHHHhcC
Q 037404 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI---LDGYAKAGEMNLAFELFEKIPHRNIVSWS---TMVWGYSKDG 259 (605)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~ 259 (605)
...+...+...|++..|+.-|...++.|+..|.++ ...|...|+...|+.-+....+..+..+. .-...+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 34567777888888888888888877777766655 34566677777777666666542222222 2234566677
Q ss_pred CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (605)
.++.|..=|+.+.+.++.. |...+|.+-+....+ .......+..+...|+...|+.+...+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 7777776666655433321 111111111110000 01122333444556666666666666665
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 037404 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM---TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412 (605)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 412 (605)
.. +.+...+..-..+|...|++..|+.-++.. ...+...+--+-..+...|+.+.++...++-.+ +.||.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 43 346666666677777777777776655433 344555555566666667777777776666655 35554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-07 Score=90.27 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
..-.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 470 ~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 470 EDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 34688999999999999999999999999999999999999887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-07 Score=86.00 Aligned_cols=412 Identities=13% Similarity=0.065 Sum_probs=249.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeeh--HHHHHHHHHhCCCh
Q 037404 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS--WNSMIAGLVKGGEL 199 (605)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~ 199 (605)
++-+...+++++|.+....++..+ +.|...+..=+-+.+..+ .+++|..+.+.-...+... +-.-.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~--ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLD--KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhh--HHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 445667889999999999999876 445566666677778888 9999998877655322221 12233445588999
Q ss_pred hHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCCCCCccc
Q 037404 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK-DGDMEMAKLLFDRMPAKTLVP 278 (605)
Q Consensus 200 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 278 (605)
++|+..++...+.|..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+- .+-.-.+ .+.+........+
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-QLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-HHHHhccCCCcch
Confidence 9999999966666666777778889999999999999999977655444433332111 1111111 1344444333334
Q ss_pred HHHH---HHHHHhCCChHHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 037404 279 WTII---ISGYAEKGMAKEAARLYDQMEEAG-------LKPDD-------GTLISILAACAESGLLGLGMKVHASINKYR 341 (605)
Q Consensus 279 ~~~l---~~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (605)
|..+ ...+...|++.+|++++....+.+ -.-+. ..-..+.-++...|+.++|..++..+.+..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 4433 445668899999999999883221 11111 112344556678899999999999998876
Q ss_pred CCCCh---hHHHHHHHHHHhcCChH-HHHHHHhcCCCCCh--------------hHH-HHHHHHHHHcCChHHHHHHHHH
Q 037404 342 FKCNT---NVCNALVDMYAKCGSLD-NAMSVFNGMTKKDL--------------VSW-NAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 342 ~~~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
..-.+ ...|.|+.+-....-++ .++..++....... ... +.++..|. +.-+.+.++...
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~ 332 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSAS 332 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHh
Confidence 43221 22233332211111111 22222322221111 111 22222222 223333333222
Q ss_pred HHHCCCCCCHHHHHHHHHHhcc--cCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHH-------
Q 037404 403 MKDEGFGPDKYTFVGVLCACTH--AGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQ------- 472 (605)
Q Consensus 403 m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~------- 472 (605)
.. +..|. ..+..++..+.+ .....++..++....+ +.+-+ ..+...++......|+++.|.+++.
T Consensus 333 lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 333 LP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred CC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 21 12333 334445444322 2257778888887766 44433 4566677888899999999999998
Q ss_pred -hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCC---CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 473 -SM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL----KGSD---PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 473 -~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.. .+...+.+...+...+.+.++.+.|..++.+++.- .+.. ...+..++..-.+.|+-++|..+++++.+.
T Consensus 408 ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 408 SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 43 23344556666777788888888888888887763 2222 234455666667889999999999999984
Q ss_pred C
Q 037404 544 R 544 (605)
Q Consensus 544 ~ 544 (605)
.
T Consensus 488 n 488 (652)
T KOG2376|consen 488 N 488 (652)
T ss_pred C
Confidence 3
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-08 Score=92.74 Aligned_cols=229 Identities=10% Similarity=-0.036 Sum_probs=153.7
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 037404 290 GMAKEAARLYDQMEEAG-LKPD--DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366 (605)
Q Consensus 290 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 366 (605)
+..+.++.-+.+++... ..|+ ...+......+...|+.+.|...|....+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776532 2222 23456666677788888888888888877653 36788888999999999999999
Q ss_pred HHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 367 SVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 367 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
..|++.. +.+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9998775 335577888888889999999999999998875 45443222222334567789999999977654 3
Q ss_pred CCCchHHHHHHHHHhhhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLK--EALRLVQSM-PV----EP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-P 514 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~ 514 (605)
..|+...+ .+. ....|+.. ++.+.+.+. .. .| ....|..++..+...|++++|+..|+++++.+|.+ +
T Consensus 195 ~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 222 23344443 333333322 11 12 23578889999999999999999999999999744 4
Q ss_pred chHHHHHHHHHh
Q 037404 515 GNYTMLSNIFAA 526 (605)
Q Consensus 515 ~~~~~l~~~~~~ 526 (605)
.....++.....
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 444445544433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-06 Score=83.03 Aligned_cols=210 Identities=10% Similarity=0.014 Sum_probs=131.2
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFL 104 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (605)
++......+.+.+++ +.+..+.+.....-.+...|+.++|......-.. .+.+.|..+.-.+....++++|++.|.
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 666666677777776 4445555555554456677899999888876653 455678777777777788999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC----
Q 037404 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---- 180 (605)
Q Consensus 105 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---- 180 (605)
.....+.. |...+.-+--.-+..|+++..........+.. +.....|..+..++.-.| +...|..++++...
T Consensus 100 nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g--~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 100 NALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG--EYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcc
Confidence 88876322 44455555444556677777776666666542 223456677777777777 78877777765542
Q ss_pred -CCeehHHH------HHHHHHhCCChhHHHHHHhhcCCC--CcchH-HHHHHHHHcCCChHHHHHHHHhCCC
Q 037404 181 -RDIVSWNS------MIAGLVKGGELSEARRLFDEMPER--DAVSW-NTILDGYAKAGEMNLAFELFEKIPH 242 (605)
Q Consensus 181 -~~~~~~~~------li~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 242 (605)
++...+.. -.....+.|.+++|++.+....+. |...+ ..-...+.+.+++++|..++..+..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 23222221 223455667777777766655221 22222 2334556667777777777776664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=99.22 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC----------CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC--
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMT----------KKDL-VSWNAMLYGLAMHGQGEKALGLFSRMKDE---GFGPD-- 411 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~~p~-- 411 (605)
+++.|..+|.+.|++++|...++... .+.+ ..++.++..|...+++++|..++++..+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34445555566666555555554332 1111 24455666777888888888888765532 12222
Q ss_pred --HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh----C-CCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC--------C
Q 037404 412 --KYTFVGVLCACTHAGFIDKGVQYFYSMERDY----G-ILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM--------P 475 (605)
Q Consensus 412 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~ 475 (605)
..+++.+...|...|++++|.+++++++... + ..+ ....++.+...|.+.+++.+|.++|.+. +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 2468889999999999999999999887642 1 122 2456778888999999999998888776 2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 476 VEPNA-IIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 476 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
..|+. .+|..|...|...|+++.|.++.+.+...
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34554 48999999999999999999999988853
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-08 Score=82.70 Aligned_cols=193 Identities=14% Similarity=-0.012 Sum_probs=103.2
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 396 (605)
.|...|+...|..-++.+.+.. +.+..++..+...|.+.|+.+.|.+.|++.. +.+..+.|.....+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444333 1133444455555555555555555555433 33445555555556666666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 397 LGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 397 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+ -.+........+.....+.|++-.|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 66666655432111 234555555555666666666666666655 22333445555666666666666666666655
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 475 -PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 475 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
...++..++...++.-...|+-+.+-++=.++.+..|.++.
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 23355555555556666666666666666666666665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-08 Score=94.03 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=107.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----ccCC
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT----HAGF 427 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~ 427 (605)
...++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 344566678888888877765 45666667778888888888888888888763 333 33344444332 2346
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAV-ELAEEVLD 504 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 504 (605)
+.+|..+|+++.. ...+++.+.+.++.+....|++++|.+++.+. .. +.++.++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7888888888766 55677788888888888888888888888776 32 33455666777777777776 66778888
Q ss_pred HHHhhcCCCC
Q 037404 505 CLIRLKGSDP 514 (605)
Q Consensus 505 ~~~~~~p~~~ 514 (605)
++...+|.+|
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-07 Score=79.17 Aligned_cols=416 Identities=11% Similarity=0.057 Sum_probs=229.7
Q ss_pred CCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC--CCeehH
Q 037404 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDIVSW 186 (605)
Q Consensus 109 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~~~~ 186 (605)
.|+....--|.+++..+.+..++..|.+++..-.+... .+....+.|..+|-+.. ++..|...++++.. |...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q--~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQ--EFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhChHHHHH
Confidence 34444444566777777777777777777766555431 14445566666666666 77777777776654 222222
Q ss_pred HH-HHHHHHhCCChhHHHHHHhhcCC-CCcchHHHHH--HHHHcCCChHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCH
Q 037404 187 NS-MIAGLVKGGELSEARRLFDEMPE-RDAVSWNTIL--DGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDM 261 (605)
Q Consensus 187 ~~-li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 261 (605)
.. -...+-+.+.+.+|+.+...|.. ++...-..-+ ......+++..+..++++.. +.+..+.+...-...+.|++
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 21 23445566777777777777644 2222111112 22345667777777777766 35555666666666677777
Q ss_pred HHHHHHHhhCCCC-Ccc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHccCchHHHHHH
Q 037404 262 EMAKLLFDRMPAK-TLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT----LISILAACAESGLLGLGMKV 333 (605)
Q Consensus 262 ~~a~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~ 333 (605)
+.|.+-|+...+- +.. .|+. .-++.+.++++.|++...++.+.|++..+.. ..-.+. ....|+. ..+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt---~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNT---LVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccch---HHH
Confidence 7777777665432 222 2443 3344456677777777777777665422110 000000 0000000 000
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037404 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 408 (605)
. .++ -+..+|.-...+.+.|+.+.|.+.+-.|.++ |++|...+.-.= ..+++.+..+-+.-+...+
T Consensus 236 h----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n- 306 (459)
T KOG4340|consen 236 H----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN- 306 (459)
T ss_pred H----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-
Confidence 0 000 1233444455677899999999999999854 667665544322 2455666666666666653
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCC-CCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI-LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 487 (605)
+-...||..++-.||+..-++.|-.++.+-.. ... -.+...|+.|=......-..++|.+-++.+...-....-...+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi 385 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAI 385 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23568999999999999999988888765422 111 1234444433333334456777777666551000000001111
Q ss_pred HH--HHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 488 GA--CRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 488 ~~--~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.. -...++ ...+++-+++.+++. -.+....+++|++..++.-+.++|....+..-
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 11 111121 223444455555543 12467788999999999999999998887543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-06 Score=85.89 Aligned_cols=415 Identities=13% Similarity=0.062 Sum_probs=265.7
Q ss_pred hCCCchHHHH----HHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCC
Q 037404 92 QNSLNAQAFR----VFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167 (605)
Q Consensus 92 ~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 167 (605)
-..+.+++.- .+.++....+..|+..|..+--++...|+++.+-+.|++..... -.....|..+-..|...| .
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag--~ 372 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG--S 372 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc--c
Confidence 3344455443 33444445577788888888888899999999999999887643 335568888999999999 8
Q ss_pred hHHHHHHHhccCC----CC-eehHHHHHHHHH-hCCChhHHHHHHhhcCC--------CCcchHHHHHHHHHcC------
Q 037404 168 VSLAKKLFMSMGE----RD-IVSWNSMIAGLV-KGGELSEARRLFDEMPE--------RDAVSWNTILDGYAKA------ 227 (605)
Q Consensus 168 ~~~a~~~~~~~~~----~~-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~------ 227 (605)
-..|..++++... |+ ...+-..-..|. +-|..++++.+-.+.+. -....|..+.-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 8889999887643 32 333333334444 44677777776666522 2344455554444321
Q ss_pred -----CChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHHhCCChHHH
Q 037404 228 -----GEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA----KTLVPWTIIISGYAEKGMAKEA 295 (605)
Q Consensus 228 -----~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 295 (605)
....++++.+++..+ .|+.+...+.--|+..++++.|.+...+..+ .++..|..|...+...+++.+|
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 123455666666643 3444444445567778899999888877643 3455599999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------cCC-------CCCh
Q 037404 296 ARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASINK---------------------YRF-------KCNT 346 (605)
Q Consensus 296 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~ 346 (605)
+.+.+...+. .|+ ..-...-+..-...++.+++......+.. .|. .-.+
T Consensus 533 l~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 533 LDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 9999887754 122 11111112222223444444332222110 110 1112
Q ss_pred hHHHHHHHHHHhcC---ChHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037404 347 NVCNALVDMYAKCG---SLDNAMSVFNGMTKKD------LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417 (605)
Q Consensus 347 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 417 (605)
.++..+.......+ ..+..+..+.....++ ...|......+.+.++.++|...+.+..+.. ......|..
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~ 689 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYL 689 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHH
Confidence 22222222111111 1111111111111222 1356667778889999999999888887642 335566777
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHh
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALR--LVQSM-PVEP-NAIIWGTLLGACRK 492 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~ 492 (605)
....+...|...+|.+.|..... +.| ++....+++.++.+.|+..-|.. ++..+ .+.| +...|..++..+.+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 77788889999999999988865 455 46788899999999998777777 77777 5555 46799999999999
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCc
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.|+.++|.+.|..+.++.+.+|.
T Consensus 767 ~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999877764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-07 Score=88.69 Aligned_cols=366 Identities=13% Similarity=0.087 Sum_probs=220.1
Q ss_pred HHHHhcCCCChHHHHHHHhccC---CCCeehHHHHHHHHHhCCChhHHHHHHhhc--CCCC-cchHHHHHHHHHcCCChH
Q 037404 158 DSYSKCGVVGVSLAKKLFMSMG---ERDIVSWNSMIAGLVKGGELSEARRLFDEM--PERD-AVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 158 ~~~~~~g~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~~~~~~~~~ 231 (605)
.+....| +++.|..+|-+-. .+|.+.|.--..+|.+.|++++|++--.+- ..|+ ...|.....++.-.|+++
T Consensus 10 naa~s~~--d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSG--DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred Hhhcccc--cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 4456678 9999999998654 357788888999999999999998877766 4555 347888899999999999
Q ss_pred HHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHH------hhCCCCCcc--------cHHHHHHHHHhC-----
Q 037404 232 LAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAKLLF------DRMPAKTLV--------PWTIIISGYAEK----- 289 (605)
Q Consensus 232 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~~~~~--------~~~~l~~~~~~~----- 289 (605)
+|+.-|.+..+ .|...+.-+..++... . .+.+.| ..+. .++. .|..++..+.+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999998875 3446677777776111 0 011111 1111 0111 133333322111
Q ss_pred -----CChHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHccCchHHH
Q 037404 290 -----GMAKEAARLYDQM-----EEAG-------LKP------------D----------DGTLISILAACAESGLLGLG 330 (605)
Q Consensus 290 -----~~~~~a~~~~~~m-----~~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a 330 (605)
.....+...+... ...| ..| | ..-...+.+...+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111100 0000 111 0 01123444555556666677
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hHH-------HHHHHHHHHcCChHHHHHHH
Q 037404 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL---VSW-------NAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-------~~l~~~~~~~~~~~~A~~~~ 400 (605)
.+.+....... .+...++....+|...|....+........+... .-| ..+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 77766666554 3555566666677777776666655554332211 112 22333555566777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH-HHHHHHHHhhhcCCHHHHHHHHHhC--CCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE-HYGCMIDLLGRSGRLKEALRLVQSM--PVE 477 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 477 (605)
++.......|+..+ +....+++....+... -+.|... -...-+..+.+.|++..|++.|.++ ..+
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 77555433433221 1122223332222221 1223221 1122256677888999999998887 333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.|...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++..+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888889999999999999999998888888888888888889999999988888874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-07 Score=90.30 Aligned_cols=295 Identities=16% Similarity=0.117 Sum_probs=133.3
Q ss_pred HHHHcCCChHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhC-----C
Q 037404 222 DGYAKAGEMNLAFELFEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEK-----G 290 (605)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~-----~ 290 (605)
..+...|++++|++.++.-.. .| ..........+.+.|+.++|..++..+.+.|+.. |..+..+..-. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 445666777777777655433 22 3445566666777777777777777776666555 34444443211 2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL-GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 369 (605)
+.+....+|+++... -|.......+.-.+.....+ ..+..++......|+| .+|+.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 455556666666553 24444433333333322222 2333444455555543 34444544454433333333333
Q ss_pred hcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 370 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
..... .....+.+...- ....-.|+. .++..+...|...|++++|.+++++++. .-+..
T Consensus 167 ~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~ 227 (517)
T PF12569_consen 167 EEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTL 227 (517)
T ss_pred HHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCc
Confidence 22110 000000000000 000011222 1233334445555555555555555544 11222
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----------c
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP----------G 515 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----------~ 515 (605)
+..|..-+..|-..|++++|.+.++.+ ... .|..+-+-.+..+.+.|++++|.+.+....+.+. ++ .
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHH
Confidence 445555555555555555555555554 222 2233333344445555555555555555544321 11 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.....+.+|.+.|++..|++.+..+.
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12234455555555555555554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=97.74 Aligned_cols=219 Identities=14% Similarity=0.095 Sum_probs=163.7
Q ss_pred HccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 037404 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+.+..+ .|......|.-.|...|.-..|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666666554 23566777777777777777777777776653 355666777777888888888888
Q ss_pred HHHHHHHCCCCC--------CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 399 LFSRMKDEGFGP--------DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 399 ~~~~m~~~g~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
.|+..+....+- +...-.. ..+..........++|-++....+..+|+.+...|.-.|.-.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 888776532110 0000000 122223334455566666655456668899999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 471 VQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 471 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|+.+ .++|+ ...||.|+..++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.|+||.+.|-.++..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9988 55665 6699999999999999999999999999999999999999999999999999999999988774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-09 Score=95.85 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=158.6
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
-+.-.|++..++.-.. ........+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777665444 222111112233445566666677655432 3333322 5555555555554444455666
Q ss_pred HHHHHhcCC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhH
Q 037404 365 AMSVFNGMT-KK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439 (605)
Q Consensus 365 A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (605)
+..-+++.. .+ +..........+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665443 22 2222222334566789999999988642 456777788899999999999999999996
Q ss_pred HhhCCCCchHHHHHHHHHhh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 440 RDYGILPQVEHYGCMIDLLG----RSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
+ +..|. +...++.++. -.+.+.+|.-+|+++ ...+++.+++.++.++...|++++|.+.++++++.+|.+
T Consensus 159 ~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 Q---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred h---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 5 33443 3333444332 234799999999999 445788899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 037404 514 PGNYTMLSNIFAATGDW-NKVANVRLQMKKT 543 (605)
Q Consensus 514 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 543 (605)
+.++..++-+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999998 6677888888874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-06 Score=85.66 Aligned_cols=295 Identities=12% Similarity=-0.027 Sum_probs=174.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 320 (605)
.|..+...+...|+.+.+.+.+.... ..+..+ .......+...|++++|...+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 34455555555565555544444332 222222 2223345567788889988888887752 223333332 212
Q ss_pred HHc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCh
Q 037404 321 CAE----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQG 393 (605)
Q Consensus 321 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 393 (605)
+.. .+..+.+.+.+... ....+........+...+...|++++|...+++.. +.+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 222 34444444444431 11112223344556677888999999999998766 34566778888889999999
Q ss_pred HHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH-H--HHHHHhhhcCCHHHH
Q 037404 394 EKALGLFSRMKDEGF-GPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY-G--CMIDLLGRSGRLKEA 467 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A 467 (605)
++|...+++...... .|+. ..+..+...+...|++++|..+++++.......+..... + .++..+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998776432 1232 235567778889999999999999875421111222211 1 233334444433222
Q ss_pred HHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-C--------CCCchHHHHHHHHHhcCChH
Q 037404 468 LRL---VQSM----PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-G--------SDPGNYTMLSNIFAATGDWN 531 (605)
Q Consensus 468 ~~~---~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~ 531 (605)
.+. .... ..............++...|+.++|...++.+.... . .........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1111 111111222356677788899999999998887642 2 12344566777889999999
Q ss_pred HHHHHHHHHHhCC
Q 037404 532 KVANVRLQMKKTR 544 (605)
Q Consensus 532 ~A~~~~~~~~~~~ 544 (605)
+|.+.+.......
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-05 Score=75.87 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=115.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC-------------CCCcccHHHHHHHHHhCC
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-------------DPDVHLYNTLIRACVQNS 94 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~ll~~~~~~~ 94 (605)
|+++.|..-.+.+. +..+|..+.+++.+.++.+-|.-.+-.|. .++ ..-..+.-.-...|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 56666544443322 33456666666666666666655554443 121 11111122224456
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHH
Q 037404 95 LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~ 174 (605)
..++|..+|.+-.+. ..|=+.|-..|.+++|.++-+.--+..+. .||......+-..+ |++.|.+.
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~--Di~~Aley 880 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARR--DIEAALEY 880 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhc--cHHHHHHH
Confidence 777777777766542 33334455667777777665543222221 23444444444555 66666666
Q ss_pred HhccCC-----------------------CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChH
Q 037404 175 FMSMGE-----------------------RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 175 ~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
|++... +|...|......+-..|+.+.|+.+|.... -|-.+.+..+-.|+.+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCch
Confidence 665421 234445555555556666666666666431 2333444444445555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037404 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271 (605)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 271 (605)
+|-++-++ ..|......|.+.|-..|++.+|..+|.+.
T Consensus 956 kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 956 KAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55554443 235556666777777777777777777664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-06 Score=84.34 Aligned_cols=363 Identities=13% Similarity=0.107 Sum_probs=219.3
Q ss_pred CCCcchHHHHH--HHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCC---------CCCCc
Q 037404 47 RDPYIAPKLIS--SLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG---------VFTDN 115 (605)
Q Consensus 47 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~p~~ 115 (605)
-|+.+-.++++ .|.--|+.+.|.+-.+.+.. -..|..|.+.+.+.++.+-|.-.+..|.... -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45566666665 35567999998887766553 3568889999999888888887777775421 1222
Q ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC-CCeehHHHHHHHHH
Q 037404 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSMIAGLV 194 (605)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 194 (605)
.+=.-+.-.....|.+++|+.++++..+. ..|-..|-..| .+++|.++-+.-.. .=..+|......+-
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g--~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQG--MWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcc--cHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 22222333345788999999999988774 35666788889 99999888765332 12236666777777
Q ss_pred hCCChhHHHHHHhhcCC-----------------------CCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHH
Q 037404 195 KGGELSEARRLFDEMPE-----------------------RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251 (605)
Q Consensus 195 ~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 251 (605)
..++.+.|++.|++... .|...|..-...+-..|+.+.|+.+|... .-|.++
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~ 944 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSM 944 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhh
Confidence 88889999999887621 23444555555555677777777777553 345666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHccC--
Q 037404 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG--LKP--DDGTLISILAACAESG-- 325 (605)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~ll~~~~~~~-- 325 (605)
++..+-.|+.++|.++-++ ..+......|.+.|-..|++.+|...|-+..... +.. ....-..+.+.+...|
T Consensus 945 VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred eeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 6777777788887777766 3445556678888888888888888887764311 000 0000011222222222
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--------------CCChhHHHHHHHHHHHcC
Q 037404 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT--------------KKDLVSWNAMLYGLAMHG 391 (605)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~l~~~~~~~~ 391 (605)
+.-.|-++|++.- . -+...+..|-+.|.+.+|+++-=+-. ..|+...+.-...++.+.
T Consensus 1023 d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2223333443321 1 12223445667777766665432111 225556666666677777
Q ss_pred ChHHHHHHHHHHHH----------CCC----------------CCCHH----HHHHHHHHhcccCCHHHHHHHHHHh
Q 037404 392 QGEKALGLFSRMKD----------EGF----------------GPDKY----TFVGVLCACTHAGFIDKGVQYFYSM 438 (605)
Q Consensus 392 ~~~~A~~~~~~m~~----------~g~----------------~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (605)
++++|..++-..++ .|+ .|+.. ....+...|.++|.+..|.+-|..+
T Consensus 1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 77777766544332 111 22222 3445566777778777776666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-06 Score=88.65 Aligned_cols=502 Identities=15% Similarity=0.054 Sum_probs=271.3
Q ss_pred HHHHHHHHHhCCCCC-CcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037404 34 KQLFAQIIKLDLQRD-PYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 109 (605)
..++.-+......++ ...|..|.+.|+...+...|.+.|+..- ..+...+..+...|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 333333333343343 3567778888887778888999888665 466778888899999999999998883333222
Q ss_pred CCCCCcccHHHHHH--HhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHH
Q 037404 110 GVFTDNFTYPFLLK--ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187 (605)
Q Consensus 110 ~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~ 187 (605)
. +.-...++-+-. .+...++...+..-|+..++.. +-|...|..|..+|.++| .+..|.++|.+...-++..+.
T Consensus 556 a-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG--ry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 556 A-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG--RYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred c-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC--ceehHHHhhhhhHhcCcHhHH
Confidence 1 101112222222 2567788888888888887754 336778999999999999 999999999877664433222
Q ss_pred ---HHHHHHHhCCChhHHHHHHhhcCC------C----CcchHHHHHHHHHcCCChHHHHHHHHhCCC-----------C
Q 037404 188 ---SMIAGLVKGGELSEARRLFDEMPE------R----DAVSWNTILDGYAKAGEMNLAFELFEKIPH-----------R 243 (605)
Q Consensus 188 ---~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~ 243 (605)
-..-.-+..|.+.+|+..+..... + -..++..+...+...|-..++...++...+ .
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 223345667888888888877721 0 112233333333333333333333332211 1
Q ss_pred ChhHHHHH-------------------HHHHHh----cCCH---H---HHHHHHhhCC--CCCcccHHHHHHHHHh----
Q 037404 244 NIVSWSTM-------------------VWGYSK----DGDM---E---MAKLLFDRMP--AKTLVPWTIIISGYAE---- 288 (605)
Q Consensus 244 ~~~~~~~l-------------------~~~~~~----~~~~---~---~a~~~~~~~~--~~~~~~~~~l~~~~~~---- 288 (605)
+...|..+ +..+.. .+.. + -+.+.+-.-. -....+|..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 11111111 111111 1111 1 0111110000 0123446656555443
Q ss_pred ----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 289 ----KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 289 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
..+...|+..+++..+. ..+...+-..+......|++..+...|-.-.... +.+..+|..+.-.+.+..+++.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHH
Confidence 22334677788777664 3344444444444455566666655554444332 3345556666666777777777
Q ss_pred HHHHHhcCCCC---ChhHHHHHH---------------------------------------HHHHHcCChHHHHHHHHH
Q 037404 365 AMSVFNGMTKK---DLVSWNAML---------------------------------------YGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 365 A~~~~~~~~~~---~~~~~~~l~---------------------------------------~~~~~~~~~~~A~~~~~~ 402 (605)
|...|.....- |...|--.. .....+|+.++-+...++
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 77777665522 222222222 222234444333322222
Q ss_pred HHH---------CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH----HHHHHhhhcCCHHHHHH
Q 037404 403 MKD---------EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG----CMIDLLGRSGRLKEALR 469 (605)
Q Consensus 403 m~~---------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~ 469 (605)
+-. .|.+-+...|........+.+.+..|.+...+.+.-.....+...|+ .+...++..|.++.|..
T Consensus 949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 111 02222334555555555556666666655555443222223334444 34455666677777766
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 470 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
-+......-+..+-..-+.. .-.|+++++.+.|++++.+-.++. .....++......+..+.|...+-+....
T Consensus 1029 a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1029 ASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred hhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 66554323333332222222 335789999999999998753333 45566777777888888898888777764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-06 Score=81.21 Aligned_cols=370 Identities=15% Similarity=0.097 Sum_probs=195.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChh
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 200 (605)
.+..|.....|+++..+-+. .|.+.-...-.+.++++...| +-+.|-++-+ .+... .+.|..|.+.|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~--qd~ka~elk~----sdgd~-laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTG--QDEKAAELKE----SDGDG-LAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcC--chhhhhhhcc----ccCcc-HHHHHHHHHcCCch
Confidence 34555556667776655432 233322334456667777777 6666654432 23332 34578888999888
Q ss_pred HHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhH---------------------------HHHH
Q 037404 201 EARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS---------------------------WSTM 251 (605)
Q Consensus 201 ~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~l 251 (605)
.|......- .-.|......+..++.+..-+++|-.+|+++..++... -...
T Consensus 633 ~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~w 712 (1636)
T KOG3616|consen 633 KAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAW 712 (1636)
T ss_pred HHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHH
Confidence 877654322 33344444445555555444555555555544322110 0111
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 037404 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331 (605)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (605)
...+...|+++.|...|-+... .-.-+.+-.....|.+|+.+++.+.... .-..-|..+...|+..|+++.|+
T Consensus 713 g~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHH
Confidence 2222333444444433332210 1112334445566777777776666542 22334556666777777777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037404 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD--LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409 (605)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 409 (605)
++|-+. ..++-.|.+|.+.|+|++|.++-.+...|. ...|-+-..-+-.+|++.+|.+++-.+. .
T Consensus 786 ~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~ 852 (1636)
T KOG3616|consen 786 ELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----E 852 (1636)
T ss_pred HHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----C
Confidence 766432 234556677777777777777776666442 3445444555666677777766654332 2
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037404 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489 (605)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 489 (605)
|+ ..+..|-+.|..+..+++.++-.. ..-..+...+..-|...|++..|...|-+.+ -|.+-+..
T Consensus 853 p~-----~aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnm 917 (1636)
T KOG3616|consen 853 PD-----KAIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNM 917 (1636)
T ss_pred ch-----HHHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHH
Confidence 32 234556666766666666554322 1123345566667777777777777776654 24445556
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
|..++-+++|.++.+. ....+.. ..++.+..+.=--+.|.+++.+.
T Consensus 918 yk~s~lw~dayriakt---egg~n~~--k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKT---EGGANAE--KHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred hhhhhhHHHHHHHHhc---cccccHH--HHHHHHHHHhhCcHHHHHHHHhh
Confidence 6666666665554432 1233333 33333344443345677777653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-06 Score=80.27 Aligned_cols=250 Identities=15% Similarity=0.062 Sum_probs=162.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCC------hhHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN------TNVCNAL 352 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 352 (605)
...+.....+..++..|++-+....+.. -+..-++....++...|.............+.|...- ...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666777777888888887777643 3333344555567777776666655555544432110 1112223
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKG 431 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 431 (605)
..+|.+.++++.|+..|.+...+... -....+....+++.+......- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 44667778888898888875422111 1122233445555555554443 334331 122225667889999999
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+..|.+++. ..+.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..=+.++....+++.|.+.|.++++.
T Consensus 378 v~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988 45778889999999999999999999987776 44554 335555556666678999999999999999
Q ss_pred cCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+|.+..+...+.++...+.......++.++
T Consensus 456 dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999998888888887764333334444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-06 Score=78.68 Aligned_cols=325 Identities=12% Similarity=0.048 Sum_probs=201.6
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHH---HHHHhCCChhHHHHHHhhc--CCCCcchH-HHHHHHH
Q 037404 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI---AGLVKGGELSEARRLFDEM--PERDAVSW-NTILDGY 224 (605)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~--~~~~~~~~-~~ll~~~ 224 (605)
.-...|...+...| .+.+|+..|....+.|+..|.++. ..|...|+..-|+.-+.+. .+||-..- ..-...+
T Consensus 39 ekhlElGk~lla~~--Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARG--QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34456788888889 999999999999988888777765 5788899999999888888 56664322 2234567
Q ss_pred HcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
.+.|.++.|..-|+.+.+.++.- +....++.+.-..++-..+.+ .+..+...|+...|++....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~------------ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQ------------QLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHH------------HHHHHhcCCchhhHHHHHHHHHh
Confidence 89999999999999887543310 111122222222222222222 24455567888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHH
Q 037404 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384 (605)
Q Consensus 305 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 384 (605)
.. +.|...+..-..+|...|++..|+.=++.+.+.... +...+..+-..+...|+.+.++...++..+-|+..-.+.-
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 52 445566666677888888888888777776665433 4555666777788888888888877776644432111100
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHhh
Q 037404 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-----VEHYGCMIDLLG 459 (605)
Q Consensus 385 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 459 (605)
.| ....+..+.+..|.+ ....++|.++.+..+...+ ..|. ...+..+-.++.
T Consensus 262 -~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 262 -FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred -HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeeccc
Confidence 01 111222222222221 2344555566665555544 1222 122334445555
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 460 RSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
..|++.+|++...+. .+.|| +.++.--..+|.-...++.|+.-|+++.+.++++..
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 666777777776665 45555 556666677777777777777777777777766643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.0001 Score=75.50 Aligned_cols=144 Identities=15% Similarity=0.266 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++..++++ .-.|... ..|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3468899999999999999888866532 36678999999999999999999999888774 5555544 5788
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
-+|++.+++.+..+++. .||......++.-|...|.++.|.-+|... ..|..|+..+...|++..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776653 377777888888899999998888777653 346777888888888887776
Q ss_pred HHHHH
Q 037404 536 VRLQM 540 (605)
Q Consensus 536 ~~~~~ 540 (605)
--.++
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 55544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-05 Score=78.21 Aligned_cols=276 Identities=14% Similarity=0.141 Sum_probs=151.0
Q ss_pred CChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037404 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307 (605)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 307 (605)
+.++.|.+.-++..+ +.+|+.+..+-.+.|.+.+|.+-|-+ ..++..|..++....+.|.+++-..++...++..-
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 344444444443332 24566666666666666666665544 33445566666666666666666666665555544
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHH
Q 037404 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387 (605)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 387 (605)
.|... +.++-+|++.+++.+.+.+.. -|+......+.+-|...|.++.|.-+|. ++.-|..+...+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHH
Confidence 44433 245556666666555444331 2344444555555556666666655554 445677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (605)
...|++..|...-++. .+..||..+-.+|...+.+.-|. +.. .++.....-..-++..|...|-+++-
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 7778777776654432 24567777777777666554432 211 12333445566677888888888888
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-c-C------CCCchHHHHHHHHHhcCChHHHH
Q 037404 468 LRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-K-G------SDPGNYTMLSNIFAATGDWNKVA 534 (605)
Q Consensus 468 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p------~~~~~~~~l~~~~~~~g~~~~A~ 534 (605)
..+++.. +.+ .....|..|.-.|.+- ++++..+.++-.... + | +....|..+.-.|.+-..|+.|.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 8887765 432 2233444444444433 344444444433321 1 1 12234555555565555555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-07 Score=81.01 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=117.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3467888888876554433221 11 022346677888888888877 456788899999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 037404 464 LKEALRLVQSM-PVEP-NAIIWGTLLGAC-RKHNA--VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4455 566777888764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 037404 539 QMKKTRA 545 (605)
Q Consensus 539 ~~~~~~~ 545 (605)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9998643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=84.68 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DL---VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFV 416 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~ 416 (605)
....+..++..+...|+++.|...|+++... ++ ..+..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4455666666777777777777777765421 22 34556666777777777777777777664211111 1334
Q ss_pred HHHHHhccc--------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037404 417 GVLCACTHA--------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488 (605)
Q Consensus 417 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 488 (605)
.+..++... |+.++|.+.++.+... .+-+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 444444433 5666677777766652 2222222222211100 00000 001124567
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+.+.|++++|...++++.+..|+++ ..+..++.++...|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999999877654 68999999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-06 Score=87.70 Aligned_cols=446 Identities=13% Similarity=0.013 Sum_probs=240.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCC-CCCcchhhHHHHHH
Q 037404 82 LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSY 160 (605)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 160 (605)
.|..|...|+...+...|...|+...+.+.. |..........+++..+++.|..+.-..-+... ..-..-|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4666666666666777777777777665322 555566666777777777777776322221110 00111222233344
Q ss_pred HhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCCCcc-hHHHHHHHHHcCCChHHHH
Q 037404 161 SKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEM--PERDAV-SWNTILDGYAKAGEMNLAF 234 (605)
Q Consensus 161 ~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~-~~~~ll~~~~~~~~~~~a~ 234 (605)
...+ +...+..-|+.... .|...|..+..+|.+.|++..|+++|.+. .+|+.. .---..-.-+..|.+.++.
T Consensus 573 Lea~--n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAH--NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCcc--chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 4555 66666666665543 35556777777777777777777777766 344321 1111222334567777777
Q ss_pred HHHHhCCC----------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHH-HHHHHHHhC-CC---hHHHHHHH
Q 037404 235 ELFEKIPH----------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT-IIISGYAEK-GM---AKEAARLY 299 (605)
Q Consensus 235 ~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~-~~---~~~a~~~~ 299 (605)
..+..... .-..++-.+...+.-.|-..+|.++++...+ .+. .+....+.. -. ...|..+|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie----~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE----SFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 76655442 0112222333333333333344444433211 110 011100000 00 11222222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCch---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----ChHHH
Q 037404 300 DQMEEAGLKPDDGTLISILAACAESGLL---G---LGMKVHASINKYRFKCNTNVCNALVDMYAK----CG----SLDNA 365 (605)
Q Consensus 300 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~A 365 (605)
-+.. .. .|+.+....+..-..+.+.. + .+.+.+-.-.+ ...++..|..|+..|.+ .| +...|
T Consensus 727 ~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 727 SQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 2222 11 23333333333323333322 1 11111111111 11123344444433332 22 33467
Q ss_pred HHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 366 MSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 366 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
...+.+.. ..+...|+.+.-. ...|++.-|...|-+-.... +-...+|..+.-.|....+++.|...|.....
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS-- 878 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS-- 878 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--
Confidence 77776554 4466778777655 66678887777777665542 33566788888889999999999999998865
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHH----------HHH
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPNAIIWGTLLGACRKHNAVELAEEV----------LDC 505 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~----------~~~ 505 (605)
-.+.+...|..........|+.-++..+|..- +.-|+...|..........|++++-+.. +++
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 23335555655555556778888888888752 3345555555555555566665554433 444
Q ss_pred HHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 506 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.....|+...+|...+..+.+.+.+.+|.++..+.+.
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555788889999999999999999999988887653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-05 Score=89.42 Aligned_cols=355 Identities=13% Similarity=0.027 Sum_probs=224.8
Q ss_pred HHHHHhCCChhHHHHHHhhcCCCCcc--hHHHHHHHHHcCCChHHHHHHHHhCCC----CChhHHHHHHHHHHhcCCHHH
Q 037404 190 IAGLVKGGELSEARRLFDEMPERDAV--SWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEM 263 (605)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 263 (605)
...+...|++.+|..........+.. ............|+++.+..+++.+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455666666666655554332211 111122334557788888888777631 233333445556678899999
Q ss_pred HHHHHhhCCC----CC---ccc-----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCch
Q 037404 264 AKLLFDRMPA----KT---LVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLISILAACAESGLL 327 (605)
Q Consensus 264 a~~~~~~~~~----~~---~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~ 327 (605)
+...+..... .+ ... ...+...+...|++++|...+++..+.-...+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9888876421 11 111 222344566899999999999998763211221 2334555567789999
Q ss_pred HHHHHHHHHHHHcCCC---C--ChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----ChhHHHHHHHHHHHcC
Q 037404 328 GLGMKVHASINKYRFK---C--NTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------K----DLVSWNAMLYGLAMHG 391 (605)
Q Consensus 328 ~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~ 391 (605)
+.|...+......... + .......+...+...|+++.|...+++... + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 9999998887643111 1 123455667788899999999998876441 1 1123445556677789
Q ss_pred ChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH-----HHHHHHhhhcC
Q 037404 392 QGEKALGLFSRMKDE--GFGPD--KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY-----GCMIDLLGRSG 462 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g 462 (605)
++++|...+.+.... ...+. ...+..+.......|+++.|...+..+............+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999999887652 11222 2344455667788999999999998885521111111111 11224455689
Q ss_pred CHHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CCCchHHHHHHHHHhcCCh
Q 037404 463 RLKEALRLVQSMPV--EPNA----IIWGTLLGACRKHNAVELAEEVLDCLIRLKG------SDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 463 ~~~~A~~~~~~~~~--~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~ 530 (605)
+.+.|.+.+..... .... ..+..+..++...|++++|...++++..... ....++..++.++.+.|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999877621 1111 1234567778889999999999999987621 1224677888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 037404 531 NKVANVRLQMKKTR 544 (605)
Q Consensus 531 ~~A~~~~~~~~~~~ 544 (605)
++|...+.++.+..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00019 Score=79.83 Aligned_cols=397 Identities=13% Similarity=0.046 Sum_probs=240.5
Q ss_pred HHHHHHHHHHhCCCC--C-C----cccHHHHHHHhhcc----CCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 037404 98 QAFRVFLDMQEKGVF--T-D----NFTYPFLLKACNGK----NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166 (605)
Q Consensus 98 ~a~~~~~~m~~~~~~--p-~----~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (605)
.+..+++.+...|.. + + .+.|+.+++-+... .+.+....++. .....+...|
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~---------------raa~~~~~~g-- 355 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHR---------------AAAEAWLAQG-- 355 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHH---------------HHHHHHHHCC--
Confidence 345667777666641 1 1 24567776654322 12223333332 2333455556
Q ss_pred ChHHHHHHHhccCCCCee--hHHHHHHHHHhCCChhHHHHHHhhcC----CCCcchHHHHHHHHHcCCChHHHHHHHHhC
Q 037404 167 GVSLAKKLFMSMGERDIV--SWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKI 240 (605)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 240 (605)
++..|..........+.. ............|+++.+...+..+. ..+..........+...|+++++..++...
T Consensus 356 ~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a 435 (903)
T PRK04841 356 FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARA 435 (903)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666665555544432111 11122234556788888888877762 122333334445556788999988887654
Q ss_pred CC----C----C----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCc----ccHHHHHHHHHhCCChHHHHHHHH
Q 037404 241 PH----R----N----IVSWSTMVWGYSKDGDMEMAKLLFDRMPA----KTL----VPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 241 ~~----~----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
.. . + ......+...+...|+++.|...+++... .+. ...+.+...+...|++++|...+.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~ 515 (903)
T PRK04841 436 EQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQ 515 (903)
T ss_pred HHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 21 1 1 11223344566789999999998887543 111 114556667788999999999998
Q ss_pred HHHHcCC---CCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCChHHHHHH
Q 037404 301 QMEEAGL---KPD--DGTLISILAACAESGLLGLGMKVHASINKY----RFK--C-NTNVCNALVDMYAKCGSLDNAMSV 368 (605)
Q Consensus 301 ~m~~~~~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~ 368 (605)
+.....- .+. ..++..+...+...|+++.|...+.+.... +.. + ....+..+...+...|++++|...
T Consensus 516 ~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 516 QTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8865311 111 234455566788899999999988876542 221 1 123345566677888999999998
Q ss_pred HhcCCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHhcccCCHHHHHHH
Q 037404 369 FNGMTK------K--DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKY--TF--VGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 369 ~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~ 434 (605)
+.+... + ....+..+...+...|++++|...+.+..... ...... .. ...+..+...|+.+.|..+
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW 675 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 886542 1 12344456667888999999999998875421 111110 10 1112344558899999999
Q ss_pred HHHhHHhhCCCCc---hHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 435 FYSMERDYGILPQ---VEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 435 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|...+
T Consensus 676 l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 676 LRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8776431 11111 112356777889999999999998876 22222 235666778889999999999999
Q ss_pred HHHHhhcCC
Q 037404 504 DCLIRLKGS 512 (605)
Q Consensus 504 ~~~~~~~p~ 512 (605)
.++++....
T Consensus 755 ~~Al~la~~ 763 (903)
T PRK04841 755 LEALKLANR 763 (903)
T ss_pred HHHHHHhCc
Confidence 999998643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-06 Score=75.86 Aligned_cols=305 Identities=13% Similarity=0.082 Sum_probs=137.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--HH-HHHHHHHhCC
Q 037404 217 WNTILDGYAKAGEMNLAFELFEKIPHR---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP--WT-IIISGYAEKG 290 (605)
Q Consensus 217 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~-~l~~~~~~~~ 290 (605)
+..++..+.+..++.+|++++..-.+. +....+.|..+|....++..|...++++...-+.- |. --.+.+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555556666677777666544332 33445666666666667777776666654332221 21 1233444556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGT--LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 368 (605)
.+..|+++...|.+. |+... ...-.......+++..+..+.++.-..| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 666666666655432 11111 1111111223444444444444433211 223333333334455555555555
Q ss_pred HhcCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 369 FNGMTKK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT-FVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 369 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
|+...+- ....|+.-+. ..+.|+++.|+++..+++++|++-.+.. ....... ...+.+..-..+....
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSA----- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHH-----
Confidence 5544321 2233433332 2334555555555555555554321100 0000000 0000000000000000
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
-...+|.-...+.+.|+++.|.+.+..|+ ...|+.|+..+.-.=. .+++.+..+-+.-+++.+|-.+.++..
T Consensus 240 ---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFAN 315 (459)
T KOG4340|consen 240 ---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFAN 315 (459)
T ss_pred ---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHH
Confidence 01112222233456667777777666663 2345555554432221 234444555555556666666666666
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 037404 520 LSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~ 538 (605)
+.-+|++..-++-|..++-
T Consensus 316 lLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHhhhHHHhHHHHHHh
Confidence 6667777766666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=76.88 Aligned_cols=94 Identities=12% Similarity=-0.043 Sum_probs=76.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+..+...+...|++++|...|+.. ...| +...+..++.++...|++++|...|+++.+.+|.++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 555677788888888888888877 3344 56678888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHhCC
Q 037404 529 DWNKVANVRLQMKKTR 544 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~ 544 (605)
++++|++.+++..+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888888888754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.4e-07 Score=92.82 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=169.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKK--------DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
+...|-..|......++.+.|++++++..+. -...|.++++.....|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4566778888889999999999999877622 3468888888888889889999999999884 22234588
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLLGACRK 492 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 492 (605)
.|...|.+.+..++|.++++.|.++++ .....|..++..+.++++-+.|..++.++ +.+.......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999655 67788999999999999999999999887 222244566666777789
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
.|+.++++.+|+..+...|...+.|..+++.-.+.|+.+.++.+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999987754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-05 Score=77.55 Aligned_cols=192 Identities=11% Similarity=0.044 Sum_probs=103.6
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----Ch--hHHHHHHHHHH
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-----DL--VSWNAMLYGLA 388 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~ 388 (605)
.+...+...|+++.|...++...+.. +.+...+..+..++...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666666544 223455666666777777777777777655421 11 23445666777
Q ss_pred HcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHhcccCCHHHHHHH--HHHhHHhhCCC--CchHHHHHHHHHhhh
Q 037404 389 MHGQGEKALGLFSRMKDEGF-GPDKYTF-V--GVLCACTHAGFIDKGVQY--FYSMERDYGIL--PQVEHYGCMIDLLGR 460 (605)
Q Consensus 389 ~~~~~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~~~--~~~~~~~~l~~~~~~ 460 (605)
..|++++|..++++...... .+..... + .++.-+...|....+..+ +...... ..+ ...........++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 77888888888877654321 1111111 1 223333334433322222 1111110 111 111222346667778
Q ss_pred cCCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 461 SGRLKEALRLVQSMP--VEP---N------AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 461 ~g~~~~A~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.|+.++|..+++.+. ... . .........++...|+.++|.+.+..++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888887761 111 1 112222334566889999999999988875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.3e-07 Score=85.07 Aligned_cols=244 Identities=13% Similarity=0.067 Sum_probs=148.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 367 (605)
+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+++..+.. +.+..+.-.|.-.|...|.-.+|.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4444444444444444432 2223344444444444444444444444444433 1234444445555555555555555
Q ss_pred HHhcCCCCCh-hHHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 368 VFNGMTKKDL-VSWNAML---------YGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 368 ~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
.++.-....+ ..|.... ..+..........++|-++ ...+..+|......|.-.|.-.|++++|+..|+
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 5543321000 0000000 0111111223344444444 445544677777777777899999999999999
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS-- 512 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-- 512 (605)
.+.. --+-|..+||.|+-.++...+.++|+..|.++ .++|. +.+...|+-+|...|.+++|...|-.++.+.+.
T Consensus 455 ~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 455 AALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 9976 33446789999999999999999999999998 77888 447888999999999999999999999987544
Q ss_pred ---C-----CchHHHHHHHHHhcCChHHHHH
Q 037404 513 ---D-----PGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 513 ---~-----~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
. ..+|..|-.++...++.|-+.+
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 1467777777777777764444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-07 Score=75.07 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=100.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037404 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV 476 (605)
Q Consensus 398 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 476 (605)
.++++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...+..++.++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555 34543 44567778899999999999999876 44557888999999999999999999999988 33
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 477 E-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 477 ~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
. .+...+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4 4677889999999999999999999999999999999999888776543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=75.74 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=66.9
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKH 493 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 493 (605)
..+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+.+. .-++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3333444445555555544444332 23334444444555555555555555555555 3334455555555555555
Q ss_pred CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|++++|..-|.++.++.|.++.++..++..|.-.|+++.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555555555555555555543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=86.17 Aligned_cols=213 Identities=10% Similarity=0.010 Sum_probs=165.9
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCC
Q 037404 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 392 (605)
..+...+.+.|-...|..++++.. .+.-.+.+|+..|+..+|..+..+.. ++++..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 445566677777777877777543 45667888888888888888776544 4577788888887777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+ -.+....+|-.+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 88888887764432 112222233457889999999988766 234456788888888999999999999998
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 473 SM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 473 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.. ...|| ...|+.+..+|.+.|+-.+|...++++++-+-.+..+|....-+..+.|.+++|++.+.++.+...
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 87 55666 569999999999999999999999999999888899999999999999999999999999987543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-07 Score=71.34 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=86.7
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+......+...+...|++++|.++|+-. .+.| +...|..|..++...|++++|+..|..+..++|++|..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455666777888999999999999988 4445 4668889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037404 525 AATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~ 543 (605)
...|+.+.|++-|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999974
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-06 Score=87.75 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
++..+..|.....+.|.+++|..+++...+ +.|+. .....+...+.+.+++++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355555666666666666666666666665 34543 3344455556666666666666666654 333345555556
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
..++.+.|++++|..+|+++ ...|+ ..++..+..++...|+.++|...|+++.+...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 66666666666666666665 12222 445556666666666666666666666665433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-05 Score=74.29 Aligned_cols=177 Identities=12% Similarity=0.122 Sum_probs=103.7
Q ss_pred hHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 362 LDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQG--EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 362 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
+++++..++++. +++..+|+.....+.+.|+. ++++..++++.+.. +-|..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555555443 22333444443333344432 45566666666532 2244556666666666666777777777
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHH
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRS---GR----LKEALRLVQSM-PVEP-NAIIWGTLLGACRKH----NAVELAEEVL 503 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~ 503 (605)
++++ ..+-+...|+.....+.+. |. .++++++..++ ...| |...|+.+...+... +...+|..++
T Consensus 167 ~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 7666 2233445555544444333 22 24556665444 3334 455777777777662 4456788888
Q ss_pred HHHHhhcCCCCchHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 037404 504 DCLIRLKGSDPGNYTMLSNIFAATG------------------DWNKVANVRLQMK 541 (605)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 541 (605)
.++...+|.++.++..|+++|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888989999999997643 2366888887774
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-06 Score=70.43 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
|... ..+...+...|+-+....+..+.... -.-+............+.|++..|+..+.++.. .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 4444 55566777788888877777765432 123444555577788888999999999998877 6778888999999
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
-+|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....+.+..+-..++.+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999998888777 4333 4667888888888899999999999998887777888888999999999999999
Q ss_pred HHHHHH
Q 037404 534 ANVRLQ 539 (605)
Q Consensus 534 ~~~~~~ 539 (605)
..+..+
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 887643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-05 Score=74.27 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=70.9
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 499 (605)
+...|.+++|+..+..++. ..+.|+..+....+.+.+.|+.++|.+.++++ ...|+ ....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4455666666666666655 34445555555666666666666666666665 34444 34445556666666666666
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+..+......+|++|..|..|+.+|...|+..+|..-+.+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666666666666666666666666666665555555554444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=71.98 Aligned_cols=98 Identities=23% Similarity=0.273 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+......++..+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455667777888889999999888887 3333 5677888888888899999999999999998999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037404 525 AATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999888753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-05 Score=76.13 Aligned_cols=188 Identities=13% Similarity=0.139 Sum_probs=158.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
.+|--..-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+-.++ +|++.-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3444555667888999999999999999964 57788899999999999999999888873 7888989888888
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 499 (605)
.....-+++|.++.+....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888888998888776552 2233344455689999999999875 4444 456888888888999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+.|...+..+|++...|+.+.-+|.+.|+..+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999976
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00012 Score=63.77 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=93.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----cCC
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH----AGF 427 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~ 427 (605)
-...|+..|++++|++..+... +......=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 3445666777777777766622 2222222234455666777777777777752 245566655555443 345
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNA-VELAEEVLD 504 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 504 (605)
+..|.-+|+++.+ ..+|+..+.+..+.++...|++++|..++++. +...++.++..++-.-...|. .+.-.+.+.
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6777777777765 46677777777777777777777777777766 334455565555544444443 344456666
Q ss_pred HHHhhcCCCC
Q 037404 505 CLIRLKGSDP 514 (605)
Q Consensus 505 ~~~~~~p~~~ 514 (605)
+.....|.++
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 6666666655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-05 Score=69.71 Aligned_cols=155 Identities=9% Similarity=0.044 Sum_probs=113.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
+-.|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666777666554443322211 01123566778888888877753 456778888889999999999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHh-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLL-GRSGR--LKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
..|+++.+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999877 3345677888888864 67777 59999999988 4445 56788888899999999999999999999
Q ss_pred hhcCCCCchHH
Q 037404 508 RLKGSDPGNYT 518 (605)
Q Consensus 508 ~~~p~~~~~~~ 518 (605)
+..|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99877665443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-05 Score=82.60 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=27.1
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 370 (605)
.+..+..+|.+.|+.+++..+++++.+.. +.|+.+.|.+...|... ++++|.+++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 44444445555555555555555555444 23444444444444444 4444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.2e-08 Score=55.69 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=24.6
Q ss_pred CCCCCCcchHHHHHHHhccCChhHHHHHhcccC
Q 037404 44 DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76 (605)
Q Consensus 44 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 76 (605)
|+.||..+|+.||+.||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-05 Score=73.22 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=139.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHG-QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF- 427 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 427 (605)
-..+...+..++|+....++... +..+|+.....+...| ++++++..++++.+.+ +-+..+|+.....+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445567778888888876633 4456665556666667 6799999999999864 2344556655545555665
Q ss_pred -HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CC----HH
Q 037404 428 -IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKH---NA----VE 497 (605)
Q Consensus 428 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---g~----~~ 497 (605)
.+++..+++++.+ ..+-+..+|+....++.+.|+++++++.++++ .. ..|...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888888877 45567889999999999999999999999998 33 34566787777666554 22 35
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 544 (605)
++..+..+++..+|.+..+|..+..++.. .++..+|.+...+..+.+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 78888899999999999999999999988 345677888888876643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.6e-06 Score=73.95 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Chh---HH
Q 037404 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKC--NTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLV---SW 380 (605)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---~~ 380 (605)
.....+......+...|+++.|...++.+....... ....+..+..++...|++++|...++++.+. +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777888999999999999999988765321 1246777889999999999999999988632 222 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 381 NAMLYGLAMH--------GQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 381 ~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
..+..++... |++++|.+.++++... .|+.. ....+... ..+... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~-----~~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR-----LAGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH-----HHHHH
Confidence 5556666654 7889999999999875 45432 22222111 001000 00112
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PV---EP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
..+...+.+.|++++|...+++. .. .| ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667789999999999999887 22 23 356788899999999999999999888877655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-05 Score=68.02 Aligned_cols=186 Identities=11% Similarity=0.103 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHH---HHHHHHHcCChHHH
Q 037404 325 GLLGLGMKVHASINK---YR-FKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA---MLYGLAMHGQGEKA 396 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A 396 (605)
.+.++..+++..+.. .| ..++.. +|..++-+....|+.+.|..+++.+...-+.++.. -...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345556665555542 22 222222 23334444445555555555555444221111111 11123334555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 037404 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P 475 (605)
Q Consensus 397 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 475 (605)
+++++.+.+.+ +.|..++-.=+...-..|+..+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 55555555543 22333444334344444554555555555544 34455555555555555555555555555555 2
Q ss_pred CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCC
Q 037404 476 VEP-NAIIWGTLLGACRKHN---AVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 476 ~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~ 513 (605)
+.| ++..+..+...+.-.| +.+.|.++|.+++++.|.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 222 2333334443332222 4445555555555555533
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-05 Score=67.35 Aligned_cols=149 Identities=12% Similarity=0.078 Sum_probs=116.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh---
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR--- 460 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 460 (605)
...|+..|++++|++..+... +......=+..+.+..+.+-|.+.++.|.+ -.+..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhc
Confidence 456889999999999888621 223333334456788889999999999976 2445566666666543
Q ss_pred -cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHH-HH
Q 037404 461 -SGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA-NV 536 (605)
Q Consensus 461 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~ 536 (605)
.+.+.+|.-+|+++ +..|+..+.+..+.++...|++++|..++++++..++.+|.++..++-+-...|+-.++. ..
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 45789999999999 478999999999999999999999999999999999999999999998888888876654 34
Q ss_pred HHHHHh
Q 037404 537 RLQMKK 542 (605)
Q Consensus 537 ~~~~~~ 542 (605)
+.+...
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-05 Score=65.30 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
.|..++-+....|+.+.|...++++... + |... .-..-...+...|.+++|.++++.+.+ ..+.|..++..=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 4445555666677777888888877765 2 4332 211112234556778888888888776 335556666655555
Q ss_pred hhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC---ChHH
Q 037404 458 LGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG---DWNK 532 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 532 (605)
.-..|+--+|++-+.+. .+..|...|.-+...|...|++++|.-.+++++-..|.++-.+..+++++.-.| ++.-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 66667666666665554 445677788888888888888888888888888778888877777777766555 4556
Q ss_pred HHHHHHHHHhCCC
Q 037404 533 VANVRLQMKKTRA 545 (605)
Q Consensus 533 A~~~~~~~~~~~~ 545 (605)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 7777777777554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9e-05 Score=70.26 Aligned_cols=147 Identities=15% Similarity=0.112 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCM 454 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 454 (605)
...+.-....+...|++++|+..++.+... .|+. .........+...|+.++|.+.++++.. ..|+ ......+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444445566789999999999998885 5554 4455566789999999999999999976 3454 6677789
Q ss_pred HHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
..+|.+.|++.+|..+++.. ..+.|+..|..|.++|...|+..++... .++.|.-.|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 99999999999999999987 4556788999999999999988776654 4557788999999
Q ss_pred HHHHHHHHHhCCC
Q 037404 533 VANVRLQMKKTRA 545 (605)
Q Consensus 533 A~~~~~~~~~~~~ 545 (605)
|+..+....++.-
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-05 Score=80.34 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHHhCCC--------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ccc-cHHHHH
Q 037404 214 AVSWNTILDGYAKAGEMNLAFELFEKIPH--------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLV-PWTIII 283 (605)
Q Consensus 214 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~l~ 283 (605)
...|..-|......++.++|.++.+++.. .-...|.++++.-..-|.-+...++|+++.+- ++. .|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34566667777777788888877777653 12356777777777777777778888877542 222 377788
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCh
Q 037404 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK-CNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 362 (605)
..|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.. -........++.-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888888888888888765 3345567777777777877778888888777664322 1344556666777788888
Q ss_pred HHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHH
Q 037404 363 DNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 363 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~ 434 (605)
+.++.+|+... ++-...|+..++.-.++|+.+.+..+|++....++.|-. ..|...+..-.+.|+-..++.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 88888888766 334578888888888888888888888888887776643 3455555544444554444333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-07 Score=52.83 Aligned_cols=32 Identities=38% Similarity=0.631 Sum_probs=23.2
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.3e-06 Score=78.39 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=97.7
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRK 492 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 492 (605)
...++..+...++++.|.++++++.+. .|+ ....++..+...++-.+|.+++.+. ..+.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566666777888888888887662 244 3445677777777888888888776 333456677777788899
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.++++.|+.+.+++.+..|.+...|..|+.+|...|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=76.33 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=113.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 037404 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVG 417 (605)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ 417 (605)
.+.+...+..|.....+.|.+++|+.+++.+. +.+......++..+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45568888899999999999999999999776 335567778888999999999999999999885 454 455667
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTL 486 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 486 (605)
+..++.+.|++++|..+|+++.. ..+-+..++..+...+...|+.++|...|++. ...|-...|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 77888999999999999999987 44455788889999999999999999999987 223444444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-05 Score=64.88 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=89.3
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037404 399 LFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV 476 (605)
Q Consensus 399 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 476 (605)
.+++.... .|+ ......+...+...|++++|...++.+.. ..+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555543 443 34456667778889999999999998877 34557788888999999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 477 EP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 477 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
.| +...+..+...+...|++++|...++++++..|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 56677888889999999999999999999999987763
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.9e-05 Score=69.67 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=120.3
Q ss_pred hHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHH------
Q 037404 378 VSWNAM-LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH------ 450 (605)
Q Consensus 378 ~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------ 450 (605)
..|..+ ..++...|++++|...-....+.. ..+......--.++...++.+.|...|++.+. ..|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASM 244 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhh
Confidence 344443 345677889999888777766642 11222222222345667888899999888754 4454322
Q ss_pred -------HHHHHHHhhhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchH
Q 037404 451 -------YGCMIDLLGRSGRLKEALRLVQSM-PVE-----PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 451 -------~~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
+..=.+-..+.|++.+|.+.|.+. .+. |+...|.....+..+.|+.++|+.-..++++++|.-...|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 222234567889999999999887 444 4555676777778899999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
..-+.++...++|++|++-+++..+...+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999986443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-05 Score=64.01 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 037404 425 AGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA----IIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 498 (605)
.++...+...++.+..+.+-.+ .....-.+...+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665321111 1223334556666677777777777666 222332 233345566677777777
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 223344556667777777777777777777654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.9e-06 Score=72.04 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
.-+.+.+++.+|+..|.++ .+.| |++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3345666777777777666 4443 4555666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHh
Q 037404 534 ANVRLQMKK 542 (605)
Q Consensus 534 ~~~~~~~~~ 542 (605)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 777776665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-06 Score=64.12 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHH
Q 037404 461 SGRLKEALRLVQSM-PVEP---NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536 (605)
Q Consensus 461 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 536 (605)
.|+++.|+.+++++ ...| +...+..++.++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777788877777 2222 445566678888888888888888888 666777777777888888888888888888
Q ss_pred HHHH
Q 037404 537 RLQM 540 (605)
Q Consensus 537 ~~~~ 540 (605)
+++.
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8763
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=59.58 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG-DWNKVANVRLQMKKT 543 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 543 (605)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788899999999999999999999999999999999999999999999 799999999998874
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-05 Score=62.65 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=68.9
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTMLS 521 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 521 (605)
++..++..+.+.|++++|.+.|.++ ...|+ ...+..++.++.+.|++++|...++++....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666777778888888777776 22232 3355567777888888888888888888877664 45677788
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 037404 522 NIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++.+.|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88888888888888888887754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0016 Score=68.84 Aligned_cols=232 Identities=8% Similarity=0.017 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037404 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321 (605)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 321 (605)
...+..|+..|...+++++|.++.+...+.++.. |-.+...+.+.++.+.+..+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 3445555555555555555555555443322221 33333344444444433333 11 1122
Q ss_pred HccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037404 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
....++..+..++..+.+.+ .+...+..+..+|-+.|+.++|..+++++. +.|+.+.|-+...|... +.++|+.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 22223333333333333322 133455566666666666666666666554 33555666666666666 6666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 478 (605)
++.+.... +...+++..+.++|.++.. ..+.+...+..+....... .+..-
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~ 221 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTR 221 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccch
Confidence 66655543 3444455556666666554 2222222222222211111 01111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
-..++.-+...|...++++++..+++.+++.+|.|..+...++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22333334444555555666666666666666665555555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.5e-06 Score=50.05 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 115 (605)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-05 Score=59.64 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=79.0
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+..++..+...|++++|.+.++++ ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677788889999999999886 33443 4677778888888999999999999999999998889999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 037404 529 DWNKVANVRLQMKKTR 544 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~ 544 (605)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998887643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.3e-05 Score=71.30 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 426 (605)
.....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4445566677777888889999988887777777778888888888888998888888642 335555555566788888
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (605)
+++.|..+.+++.. -.+-+..+|..|+.+|.+.|+++.|+-.+..++.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999988876 3444566888899999999999999988888853
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0087 Score=57.87 Aligned_cols=402 Identities=13% Similarity=0.114 Sum_probs=198.0
Q ss_pred CCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHH
Q 037404 46 QRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122 (605)
Q Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 122 (605)
+-|...|+.||+-+..+ ..+++++.++++.. .....|..-|..-.+.++++....+|.+-+..- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 67888999999965544 89999999998873 456678888888889999999999999887652 3444555444
Q ss_pred HHhh-ccCCHHHH----HHHHHH-HHHhCCCCCc-chhhHHHHHHH---------hcCCCChHHHHHHHhccCC-C--Ce
Q 037404 123 KACN-GKNWFHLV----QMIHAL-IYKCGYFGDI-FVPNSLIDSYS---------KCGVVGVSLAKKLFMSMGE-R--DI 183 (605)
Q Consensus 123 ~~~~-~~~~~~~a----~~~~~~-~~~~~~~~~~-~~~~~l~~~~~---------~~g~~~~~~a~~~~~~~~~-~--~~ 183 (605)
.--. ..+..... .+.|+. +.+.|+++-. ..|+..+..+- ... .++..+++++++.. | |.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q--RI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ--RITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH--HHHHHHHHHHHHhcCccccH
Confidence 4322 22222222 222222 3344554433 34555555432 223 56666777776643 1 11
Q ss_pred -------ehHHHHHHHH-------HhCCChhHHHHHHhhcCCCCcchHHHHHHHHHc-------CCChHH--HHHHHHhC
Q 037404 184 -------VSWNSMIAGL-------VKGGELSEARRLFDEMPERDAVSWNTILDGYAK-------AGEMNL--AFELFEKI 240 (605)
Q Consensus 184 -------~~~~~li~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~~--a~~~~~~~ 240 (605)
..|..-|+.. -+...+..|..+++++ ..+.+++.+ .|-.++ ..+++...
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel--------~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQEL--------QNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--------HHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 1121111111 1223344555555544 001111100 000011 11111110
Q ss_pred C---CC------C--------hhHHHHHHHHHHhc-CCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCC-------hHHH
Q 037404 241 P---HR------N--------IVSWSTMVWGYSKD-GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM-------AKEA 295 (605)
Q Consensus 241 ~---~~------~--------~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a 295 (605)
. +. + ..+|...+..+.-+ .-|-.+-..+.... +.+...|+ .+++
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s-----------~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS-----------DLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-----------HHHHHhcccccchhhHHHH
Confidence 0 00 0 01111111111000 00111111111110 11111222 3445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH---ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 296 ARLYDQMEEAGLKPDDGTLISILAACA---ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
..+++.....-..-+..+|..+...-. +.+..+....++..+...-..--..+|-.+++...+..-+..|+.+|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 555554443322223333333322211 11224555556655554332222345666677666777777777777766
Q ss_pred CC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 373 TK-----KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 373 ~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
.+ .++...++++..||. ++..-|.++|+--.+. ..-+..-....+.-+...|+-..+..+|++.... ++.|+
T Consensus 393 R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ 469 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSAD 469 (656)
T ss_pred hhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChh
Confidence 52 255566666666653 5666777777764432 1223333344555566677777777777777773 45543
Q ss_pred --hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 448 --VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 448 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
..+|..++..=..-|++..+.++-+++
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 457777777777777777777776654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-06 Score=58.14 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++..+...|++++|+..++++++..|.++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46678889999999999999999999999999999999999999999999999998754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.1e-05 Score=72.60 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=41.6
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+...|++++|+++|+++ ...| +...+..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444555555555444 2222 233444444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 037404 536 VRLQMKK 542 (605)
Q Consensus 536 ~~~~~~~ 542 (605)
.+++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.1e-06 Score=48.89 Aligned_cols=33 Identities=39% Similarity=0.704 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 113 (605)
.+|+.+|.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00028 Score=58.42 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK---YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCM 454 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 454 (605)
|..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|+ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44444444 4778888888888888753 2231 23334556778888888898888888873 32222 2244456
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQSMP-VEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
...+...|++++|+..++... .......+...+.++...|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 778888899999999887763 2233456666778888899999999888875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.7e-05 Score=59.20 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=73.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLL 487 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 487 (605)
++..+...+...|++++|.+.+..+.....-.+ ....+..++..+.+.|++++|.+.++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345555666777777777777777766321111 1345566777888888888888888876 22233 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
.++.+.|++++|...++++++..|+++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88888899999999999999888887654443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=47.84 Aligned_cols=34 Identities=41% Similarity=0.747 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 411 (605)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00041 Score=62.18 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=90.1
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcCCCCchH
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKH---NAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
..+-|...|..|...|...|+++.|..-|.+. .+. +++..+..+..++..+ ....++..+++++++.+|.+....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34568899999999999999999999999988 333 4566777777776544 367789999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
..|+..+...|++.+|...++.|.+.....
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999976533
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.1e-05 Score=63.80 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
...+..++..+...|++++|...|++. ...|+ ...+..++..+.+.|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777788888888888776 22222 3567778888888999999999999999988988888888888
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHhC
Q 037404 523 IFAATGD--------------WNKVANVRLQMKKT 543 (605)
Q Consensus 523 ~~~~~g~--------------~~~A~~~~~~~~~~ 543 (605)
++...|+ +++|.+++++..+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 8888776 45566666655553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.9e-05 Score=66.98 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=64.3
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 500 (605)
.+.+++.+|+..|.++++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 455667777777776665 23345555666666777777777777666665 45555 336777777777777777777
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHH
Q 037404 501 EVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+.|+++++++|++......|-.+-
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHH
Confidence 777777777777765555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=62.76 Aligned_cols=95 Identities=15% Similarity=-0.053 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
....+..++..+...|++++|+..|++. .+.|+ ..++..+...+...|++++|+..++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988877 33232 347888899999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHHH
Q 037404 522 NIFA-------ATGDWNKVANVRLQMK 541 (605)
Q Consensus 522 ~~~~-------~~g~~~~A~~~~~~~~ 541 (605)
.++. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8888 8888887766666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.1e-05 Score=46.21 Aligned_cols=33 Identities=39% Similarity=0.653 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00093 Score=54.49 Aligned_cols=92 Identities=13% Similarity=-0.018 Sum_probs=80.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
......-+...|++++|..+|+-+ -..-+..-|..|..++...+++++|+..|..+..+.++||...+..+.+|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 334555667899999999999877 223456678888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 037404 529 DWNKVANVRLQMKK 542 (605)
Q Consensus 529 ~~~~A~~~~~~~~~ 542 (605)
+.+.|+..|+.+.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999887
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.9e-05 Score=54.29 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=54.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
...|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.+++..+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678999999999999999999999999999999999999999999999999998654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=2e-05 Score=55.41 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|++.++++...+|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999999888753
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00025 Score=68.43 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=81.1
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVE 497 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 497 (605)
..+...|++++|+..|.++++ ..+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 345567788888888888876 33445667777888888888888888888877 4444 4667888888888899999
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
+|+..++++++++|.++.+...+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999888877776664444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00089 Score=67.53 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.++++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444444344444555555555555555555 24455555555555555555555555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.018 Score=54.24 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
+.-+...|+...|.++-.+..-|+-.-|...+.+++..++|++-..+... +-++..|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33344444455555554444444444455555555555555443332211 112233444444444444444444
Q ss_pred HHHHH
Q 037404 433 QYFYS 437 (605)
Q Consensus 433 ~~~~~ 437 (605)
.++..
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 44433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.035 Score=53.91 Aligned_cols=154 Identities=8% Similarity=0.045 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
.+|..++..-.+......|..+|.+..+.+..+ ......+++.-++ .++..-|..+|+.-.++ +..++.--...+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHH
Confidence 578888888888888999999999999988777 5566777776554 57888999999988774 3444455567788
Q ss_pred HhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----chHHHHHHHHHhc
Q 037404 457 LLGRSGRLKEALRLVQSM---PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP----GNYTMLSNIFAAT 527 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~ 527 (605)
-+...|+-..|..+|++. .+.|+ ..+|..++.--..-|+...+.++-++.....|.+- ..-..+.+-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 888899999999999987 23444 46899999888889999999999888887766221 2233455555555
Q ss_pred CChHHHH
Q 037404 528 GDWNKVA 534 (605)
Q Consensus 528 g~~~~A~ 534 (605)
+.+..-.
T Consensus 524 d~~~c~~ 530 (656)
T KOG1914|consen 524 DLYPCSL 530 (656)
T ss_pred ccccccH
Confidence 5544333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.054 Score=56.00 Aligned_cols=490 Identities=13% Similarity=0.067 Sum_probs=256.5
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHH--hccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL--ALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRV 102 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (605)
+++..|.+....+.+.. ||. .|...+.++ .+.|+.++|..+++... ..|..+...+-.+|...++.++|..+
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 55566666666666653 443 333444444 58899999999998765 34667788888999999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC--------ChHHHHHH
Q 037404 103 FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV--------GVSLAKKL 174 (605)
Q Consensus 103 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~~~a~~~ 174 (605)
|++..+. .|+......++.+|.+.+++.+-.++--++.+. ++-+.+.+-+.++.+...-.. -..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998865 566777778888888888877766665555553 344555555555555443210 23445566
Q ss_pred HhccCCCC--ee---hHHHHHHHHHhCCChhHHHHHHhhc-----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 037404 175 FMSMGERD--IV---SWNSMIAGLVKGGELSEARRLFDEM-----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244 (605)
Q Consensus 175 ~~~~~~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 244 (605)
++.+.+.+ .. -.-.-...+-..|++++|++++..- ...+...-+.-+..+...+++.+..++-.++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66655433 11 1222234455778899999888332 22233333445666677777777666655544321
Q ss_pred hhHHHHHHHH----------------HHhcCCHHHHHHHHhhCCCC-CcccHHHHHHHHH---hCCChHHHHHHHHHHHH
Q 037404 245 IVSWSTMVWG----------------YSKDGDMEMAKLLFDRMPAK-TLVPWTIIISGYA---EKGMAKEAARLYDQMEE 304 (605)
Q Consensus 245 ~~~~~~l~~~----------------~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~ 304 (605)
..-|...++. +...+..+...+...+.... .--+|-+-+..+. .-|+.+++...|-+-
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k-- 334 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK-- 334 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--
Confidence 1112222221 11222333333333332221 2223444444433 347777766554322
Q ss_pred cCCCC-------------CHHHHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-----hHHH
Q 037404 305 AGLKP-------------DDGTLISILAACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS-----LDNA 365 (605)
Q Consensus 305 ~~~~p-------------~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A 365 (605)
-|-.| +......++..+.... +.....+.++. +...+..-.-.|. .+.-
T Consensus 335 fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 335 FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH------------HHHHHHHHHHhhccccCChHHH
Confidence 12121 1111122222222211 11111111111 1111111111111 1111
Q ss_pred HHHHhc--------------CCCC-----C---hhHHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037404 366 MSVFNG--------------MTKK-----D---LVSWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLC 420 (605)
Q Consensus 366 ~~~~~~--------------~~~~-----~---~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~ 420 (605)
..++.+ +.+. + ..+-+.|+..+.+.++.. +|+-+++.-.... +-|..+-..+++
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLir 481 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHH
Confidence 111111 0000 1 124566777788877765 4444455444432 335566667788
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCC-HHHHHHHHHHHHhcCCHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPN-AIIWGTLLGACRKHNAVE 497 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~g~~~ 497 (605)
.|+-.|-...|.+.|..+--+ .+..|...|. +...+...|++..+...+... .+ ..+ ..+-..+..+| +.|.+.
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~yS 558 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYS 558 (932)
T ss_pred HHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchh
Confidence 888889999999988888653 4544443332 334455667777776666554 11 011 12223333444 667777
Q ss_pred HHHHHHHHHHhhcCC----CCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 498 LAEEVLDCLIRLKGS----DPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+..++..--.+++.. -..+-......+...++.++-...+..|.
T Consensus 559 kI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 559 KIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 766665443333221 11233445566777788887777777766
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.3e-05 Score=54.51 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA-IIWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
|+++.|+.+++++.+.....++...+..++.+|.+.|++++|.+++++.+..|.. .....++.++.+.|++++|+..++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555442111112333333455555555555555555443222222 233333455555555555555554
Q ss_pred H
Q 037404 505 C 505 (605)
Q Consensus 505 ~ 505 (605)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0045 Score=51.00 Aligned_cols=133 Identities=9% Similarity=0.017 Sum_probs=105.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 037404 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP---NAIIW 483 (605)
Q Consensus 408 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 483 (605)
..|+...-..|..+....|+..+|...|++... --+..|..+...+.++....+++..|...+++. ...| ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777777788899999999999999999887 245567888888999999999999999999887 2222 22333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
..+.+.+...|++..|+..|+.+....|. +..-...+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45778899999999999999999987665 55666778889999998888776666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=61.44 Aligned_cols=109 Identities=13% Similarity=0.215 Sum_probs=54.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHhccc
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH-GQGEKALGLFSRMKD----EGFGPD--KYTFVGVLCACTHA 425 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~ 425 (605)
+..|...|++..|-+++.+ +...|... |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4455566666665554432 44555555 666666666666543 12 111 12345555666677
Q ss_pred CCHHHHHHHHHHhHHhhCCC-----CchH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 426 GFIDKGVQYFYSMERDYGIL-----PQVE-HYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
|++++|.++|+++... ... .+.. .+-..+-++...|+...|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777766552 111 1121 2223344555566776776666664
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.8e-05 Score=51.49 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=50.9
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 454 MIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
++..+...|++++|.+.|+++ ...|+ ...+..++.++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 566788999999999999988 44564 56888899999999999999999999999999875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=52.94 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNA 495 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 495 (605)
+...+...|++++|...++.+.+ ..+.+...+..++..+...|++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33344445555555555555544 12222344455555555566666666666554 2222 23455556666666666
Q ss_pred HHHHHHHHHHHHhhcC
Q 037404 496 VELAEEVLDCLIRLKG 511 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p 511 (605)
++.|...+.++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6667666666665544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=56.27 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD--KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.++.. ..+.+...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 4555566666667777777777776665432222 24555566666666777777776666655 2222344555555
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
..+...|+...+..-++.. ...+++|.++++++.+.+|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5565555554443322221 012677888888888888776 5555555555444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.8e-05 Score=43.94 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGV 111 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 111 (605)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.042 Score=52.22 Aligned_cols=337 Identities=10% Similarity=0.098 Sum_probs=170.8
Q ss_pred HHHHHHHHhCCChhHHHHHHhhcC----C----CCcchHHHHHHHHHcCCChHHHHHHHHhCCCCCh-hHHHHHHHHHHh
Q 037404 187 NSMIAGLVKGGELSEARRLFDEMP----E----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSWSTMVWGYSK 257 (605)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~----~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~ 257 (605)
+..++++...|++.++..+++++. + -+..+|+.++-.+++.=-++ +-+ ....+. .-|-.++-.|.+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e-~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKE-SMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHH-hcccccChHHHHHHHHHHH
Confidence 456778888999999999888882 2 47777877555554321111 111 111111 223334444433
Q ss_pred cCCHHHHHHHHhhCCCCCccc----HHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCchHHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLVP----WTIIISGYAE--KGMAKEAARLYDQMEEAGLKPDDGT-LISILAACAESGLLGLG 330 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a 330 (605)
.=.. ++...-....+ ...++....- ..+..--+.++......-+.|+... ...+...+.+ +.+++
T Consensus 207 ki~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~ 278 (549)
T PF07079_consen 207 KIHA------FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV 278 (549)
T ss_pred HHHH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH
Confidence 2111 11100001111 1111111111 1111222223333333335555432 2333333333 44444
Q ss_pred HHHHHHHHHcCCC----CChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhH-------HHHHHHHHHH----cCCh
Q 037404 331 MKVHASINKYRFK----CNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KKDLVS-------WNAMLYGLAM----HGQG 393 (605)
Q Consensus 331 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~~----~~~~ 393 (605)
..+.+.+....+. .-...|..++....+.++...|...+.-+. +|+... -..+-+..+. .-+.
T Consensus 279 ~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 279 GHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 4444433322111 113457777778888888888887776544 332221 1112222221 1123
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH---HHhcccCC-HHHHHHHHHHhHHhhCCCC-chHHHHHHHH----Hhhh---c
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFVGVL---CACTHAGF-IDKGVQYFYSMERDYGILP-QVEHYGCMID----LLGR---S 461 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~----~~~~---~ 461 (605)
..-+.+|.......+.-.. ....++ .-+-+.|. -++|..+++.+.+ +.| |...-|.+.. .|.. .
T Consensus 359 r~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~ 434 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSM 434 (549)
T ss_pred HHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556665554332211 122222 22444554 8889999988876 333 3333332211 1211 1
Q ss_pred CCHHH---HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 462 GRLKE---ALRLVQSMPVEP----NAIIWGTLLGA--CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 462 g~~~~---A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
..+.+ -...+++.+++| +...-|.|..+ +..+|++.++.-.-.-+.++.| ++.+|..+|-++....+|++
T Consensus 435 ~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 435 HAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHH
Confidence 22222 223344555554 34455666544 5678999999999999999999 79999999999999999999
Q ss_pred HHHHHHHHH
Q 037404 533 VANVRLQMK 541 (605)
Q Consensus 533 A~~~~~~~~ 541 (605)
|..++..+.
T Consensus 514 A~~~l~~LP 522 (549)
T PF07079_consen 514 AWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC
Confidence 999998665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00098 Score=61.94 Aligned_cols=135 Identities=14% Similarity=0.117 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA-CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467788888888888999999999998643 2334444444444 3335677779999999998 45667788899999
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 457 LLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 22233 348999998889999999999999999998887543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.015 Score=54.36 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHh-hCCCCc--hH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-----PDKY-TFVGVLCACTHAGFIDKGVQYFYSMERD-YGILPQ--VE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~--~~ 449 (605)
++..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...|+...|...+++.... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445677788888888888888887764322 1221 2333444666778898999888887542 122222 34
Q ss_pred HHHHHHHHhhhc--CCHHHHHHHHHhCCCCCCHH
Q 037404 450 HYGCMIDLLGRS--GRLKEALRLVQSMPVEPNAI 481 (605)
Q Consensus 450 ~~~~l~~~~~~~--g~~~~A~~~~~~~~~~p~~~ 481 (605)
....|+.++-.. ..+++|+.-|+.+. +.|..
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 556667776543 45778888888874 33443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.002 Score=65.12 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=105.2
Q ss_pred CCCCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccC--------CHHHHHHHHHH
Q 037404 372 MTKKDLVSWNAMLYGLAM--HG---QGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAG--------FIDKGVQYFYS 437 (605)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g--------~~~~a~~~~~~ 437 (605)
..+.+...|...+++... .+ +...|..+|++..+. .|+. ..+..+..++.... +...+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 335688899999887543 32 377999999999985 6764 45665554443221 22344444444
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.......+.+...|..+.......|++++|...++++ ...|+...|..++..+...|+.++|.+.++++.+++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3331123445678888888888889999999999998 67789889999999999999999999999999999999985
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00055 Score=63.36 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhH---HhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSME---RDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-------P-VEPNA 480 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 480 (605)
..|..|...|.-.|+++.|+...+.-. +.+|... ....+..+..++.-.|+++.|.+.|+.. + -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666677777888888877665322 2234332 2446777888888888888888887754 2 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLK------GSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..+|..+|.-..++++|+.++.+=+.+. .....++..|+.+|...|..+.|+.+.++..+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456677777777778888888877655441 22345678888888888888888887777655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=51.34 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=57.4
Q ss_pred HHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCchHHHHHHHHH
Q 037404 454 MIDLLGRSGRLKEALRLVQSM---PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS---DPGNYTMLSNIFA 525 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 525 (605)
+..++-..|+.++|+.+|++. +.... ...+..+..++...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445566667777777777665 22211 234555667777777777777777777776666 5555566667777
Q ss_pred hcCChHHHHHHHHHHH
Q 037404 526 ATGDWNKVANVRLQMK 541 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~ 541 (605)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777765544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.4e-05 Score=42.23 Aligned_cols=31 Identities=35% Similarity=0.687 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 408 (605)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888887763
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.097 Score=53.07 Aligned_cols=323 Identities=13% Similarity=0.117 Sum_probs=182.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhcCCCC---cchHHHHHHHHHcCC---ChHHHHHHHHhCCC--CChhHHHHHHHHHHh
Q 037404 186 WNSMIAGLVKGGELSEARRLFDEMPERD---AVSWNTILDGYAKAG---EMNLAFELFEKIPH--RNIVSWSTMVWGYSK 257 (605)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 257 (605)
-..+|+-+...+.+..|+++-..+..|. ...|......+.+.. +-+-+..+-+++.. ....+|..+..-...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 3456777888888888888888886654 445555555555542 22333334444444 455678888888888
Q ss_pred cCCHHHHHHHHhhCCCCCcc--------cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLV--------PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 329 (605)
+|+.+-|..+++.=...... -+..-+.-....|+.+-...++-.+..+ .+...+.. ...+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~------~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFM------TLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHH------HHHhchh
Confidence 89999888888764432211 1444445555566666666665555432 11111111 1123334
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-C------CCCChhHHHHHHHHHHHcCCh---------
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG-M------TKKDLVSWNAMLYGLAMHGQG--------- 393 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~l~~~~~~~~~~--------- 393 (605)
|..+|..+.+..-. ..+-+.| +.++..++...|.. - ..+-..........+.+....
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44455544332100 0111112 22222222222210 0 011112222333344443321
Q ss_pred -HHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 394 -EKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 394 -~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
.+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 111222222222 23333444556666677788888898888776633 77778888888999999999988888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 472 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+..+ .+.-|.-+..+|.+.|+.++|..++-+.-. +.....+|.+.|++.+|.++--+-
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 7764 245566678899999999999988765332 226788899999999988765433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=51.60 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 460 RSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
..|++++|+++|+++ ...| +...+..++.+|.+.|++++|..+++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455555666665555 2222 444555556666666666666666666666666554444433
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.018 Score=52.11 Aligned_cols=174 Identities=10% Similarity=0.029 Sum_probs=102.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---ChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 351 ALVDMYAKCGSLDNAMSVFNGMTKK---DLVS---WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
.....+...|++++|.+.|+.+... +... .-.++.+|.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677788887777776632 1122 234556677788888888888887774322112223222222221
Q ss_pred --cC---------------C---HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 037404 425 --AG---------------F---IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484 (605)
Q Consensus 425 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 484 (605)
.+ + ...|...|+.+++ .|=...-..+|...+..+...--.. -.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-EL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-HH
Confidence 11 1 1233344444444 2222233344444433331000011 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.+..-|.+.|.+..|..-++.+++..|+.+ .++..++.+|...|..++|.+......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 456778899999999999999999877765 567788899999999999999877654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0008 Score=61.26 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTMLS 521 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 521 (605)
.|......+.+.|++++|...|+.. ...|+ +..+..++.+|...|++++|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445668888888888776 22333 2355667788888888888988888888877765 45566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++...|++++|..+++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888999999988888874
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.084 Score=49.22 Aligned_cols=275 Identities=17% Similarity=0.162 Sum_probs=178.1
Q ss_pred cCCHHHHHHHHhhC---CCCCcccHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCchHHH
Q 037404 258 DGDMEMAKLLFDRM---PAKTLVPWTIIIS--GYAEKGMAKEAARLYDQMEEAGLKPDDG--TLISILAACAESGLLGLG 330 (605)
Q Consensus 258 ~~~~~~a~~~~~~~---~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 330 (605)
.|+-..|.++-.+. ...+..+.-.++. +-.-.|+++.|.+-|+.|.. .|... .+..+.....+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 45555555554432 2334444433433 23356888889888888876 23322 233444445677888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChh--HHHHHHHHHH---HcCChHHHHHHH
Q 037404 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-----KKDLV--SWNAMLYGLA---MHGQGEKALGLF 400 (605)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~ 400 (605)
.++-...-..- +.-.......+...+..|+|+.|+++++.-. +++.. .-..|+.+-+ -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877765543 2235677888899999999999999987543 34432 2222332211 123455666655
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH--H--HHHHhCC
Q 037404 401 SRMKDEGFGPDKYT-FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA--L--RLVQSMP 475 (605)
Q Consensus 401 ~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~ 475 (605)
.+..+ +.|+... -..-..++.+.|+..++-.+++.+-+ ..|.+.++..++ +.+.|+.... . +-+..|+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence 55554 5777653 33345778999999999999999965 456665554333 4566653221 1 1223332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHhCCC
Q 037404 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT-GDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 476 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 545 (605)
+.+......+..+....|++..|..-.+.+.+..|. ..+|..|+++-... |+-.++...+-+..+..-
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 234567778888999999999999999999988887 45788888887555 999999999999887543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00088 Score=64.69 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=85.7
Q ss_pred CCCCCCcchHHHHHHHhccCChhHHHHHhcccCC-C-----CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037404 44 DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-P-----DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT 117 (605)
Q Consensus 44 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 117 (605)
+.+.+......+++......+++.+..++-.... | -..+..++++.|...|..+.++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455566666677777666777777777766552 1 223456788888888888888888888888888888888
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhc
Q 037404 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163 (605)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (605)
|+.||..+.+.|++..|.++...|...+...+..++.--+..|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766655555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00096 Score=62.00 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR-SGRLKEALRLVQSM--PVEPNAIIWGTLLGA 489 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 489 (605)
.+|..+++...+.+..+.|..+|.++.+. -..+..+|...+..-.. .++.+.|.++|+.+ ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45777888888888999999999999862 33345556665555334 56777799999988 345677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...|+.+.|+.+|++++..-|.+. .+|..++..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765544 57888999999999999999999999875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0028 Score=54.11 Aligned_cols=113 Identities=16% Similarity=0.100 Sum_probs=51.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACR 491 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 491 (605)
+..+...+...|++++|...++.+......++ ...++..+...+...|++++|.+.+++. .+.|+ ...+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33344444445555555555555543111111 1234555555555555555555555554 22222 233344444443
Q ss_pred -------hcCCHH-------HHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 492 -------KHNAVE-------LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 492 -------~~g~~~-------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
..|+++ +|...++++...+|.+ +......+...|++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 566665 4444555555555543 23444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.013 Score=52.99 Aligned_cols=54 Identities=17% Similarity=0.013 Sum_probs=25.5
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
.+-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3345555555555555555554332222 23334444555555555555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00038 Score=48.93 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=54.5
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHN-AVELAEEVLDCLIRLKG 511 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 511 (605)
+...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888899999999999999887 4445 4668888899999999 79999999999999887
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=9e-05 Score=43.05 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 502 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0073 Score=49.15 Aligned_cols=87 Identities=7% Similarity=-0.026 Sum_probs=37.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
+...+...|++++|.++|+.+... .| +..-|..|..+|...|++.+|+..|..+.. .. +.++..+-.+..++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHHHHc
Confidence 333344445555555555544442 22 222333344444444455555555544433 11 22344444444444444
Q ss_pred CCHHHHHHHHHh
Q 037404 462 GRLKEALRLVQS 473 (605)
Q Consensus 462 g~~~~A~~~~~~ 473 (605)
|+.+.|.+.|+.
T Consensus 117 G~~~~A~~aF~~ 128 (157)
T PRK15363 117 DNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.16 Score=51.06 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=110.7
Q ss_pred CCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC-CCeehHHHH----------HHHHHhCCChhHHHHHHhhcCCCCcc
Q 037404 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSM----------IAGLVKGGELSEARRLFDEMPERDAV 215 (605)
Q Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~-~~~~~~~~l----------i~~~~~~g~~~~A~~~~~~~~~~~~~ 215 (605)
.|-+..|..|.......- +++.|+..|-+... +.+..-..| ...-+--|++++|.++|-+|.+.|.
T Consensus 689 nPHprLWrllAe~Al~Kl--~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKL--ALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHH--hhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-
Confidence 355566666666555555 66666666655543 111110000 1112234788888888887765553
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 037404 216 SWNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290 (605)
Q Consensus 216 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (605)
.+..+.+.|++-...++++..-..+ ...++.+...+.....|++|.+.+...... ...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHH
Confidence 3556667788888888887654321 256777777777777788887777764321 12344444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 370 (605)
++++-..+-.. ++-+...+-.+...+.+.|.-++|.+.+-+.. .+ .+.+..|...++|.+|.++-+
T Consensus 837 ~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 837 LFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332 23334444455556666666666555443221 11 123445556666666666665
Q ss_pred cCCCC
Q 037404 371 GMTKK 375 (605)
Q Consensus 371 ~~~~~ 375 (605)
...-|
T Consensus 903 ~~~l~ 907 (1189)
T KOG2041|consen 903 RFQLP 907 (1189)
T ss_pred hccch
Confidence 54433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0051 Score=50.69 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=93.7
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS- 512 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 512 (605)
+..++....|+...-..|..++...|+..+|...|++. ....|...+..+.++....+++..|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33333456688888888999999999999999999987 35568888889999999999999999999999998764
Q ss_pred -CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 513 -DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 513 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|.....++..|...|++.+|+.-++.....-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 67788899999999999999999999999854
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00039 Score=50.34 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---C-C---CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLK---G-S---DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+++.+...|...|++++|+..+++++++. + + -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467778888888888888888888888651 1 2 235677888888899999999988888765
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00098 Score=63.74 Aligned_cols=66 Identities=14% Similarity=-0.049 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN---YTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+...++.+..+|...|++++|+..++++++++|+++.. |+.++.+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346677777888888888888888888888888877744 778888888888888888888888774
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.21 Score=50.30 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=73.7
Q ss_pred ChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCcc--cHH--HHH--HHhhccCCHHHHHH
Q 037404 64 QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNF--TYP--FLL--KACNGKNWFHLVQM 136 (605)
Q Consensus 64 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~--~~~--~ll--~~~~~~~~~~~a~~ 136 (605)
..++|.++.+. .|.+..|..|...-...-.++.|...|-+.... |++.-.. +.. .+- ..-+--|.+++|++
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 34555555443 466677877666555555566666665544331 2211000 000 000 01223477888888
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCC-----eehHHHHHHHHHhCCChhHHHHHHhhc
Q 037404 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD-----IVSWNSMIAGLVKGGELSEARRLFDEM 209 (605)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (605)
++-++-++. .-+..+.+.| |+-.+.++++.-...+ ..+|+.+...+.....+++|.+.|..-
T Consensus 756 ~yld~drrD---------LAielr~klg--DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLG--DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhh--hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887765543 3466677777 7777777776644321 235677777777777777777666543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0035 Score=47.11 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=61.3
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChH
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 394 (605)
..+..|...+++.....+|+.+++.|+ -|+..+|+.++.+.++..--.. .-.++.-
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~-----------------------~ie~kl~ 86 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE-----------------------DIENKLT 86 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch-----------------------hHHHHHH
Confidence 345555666888888888888888888 7788888888877665421111 1112345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
+.+.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 677888999999999999999999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.24 Score=50.44 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCCCCCcccHHHH-----HHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC-CCChHHHHHHHhccCC--
Q 037404 109 KGVFTDNFTYPFL-----LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG-VVGVSLAKKLFMSMGE-- 180 (605)
Q Consensus 109 ~~~~p~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~a~~~~~~~~~-- 180 (605)
-|++.+..-|..+ +.-+...+.+..|.++-..+-..-... ..++......+.+.. ..+-+.+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 4566655555443 444567777888888776663322222 566777777777662 2244555666666665
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhc
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM 209 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (605)
....+|..+.+.....|+++-|..+++.=
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E 533 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELE 533 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 45667888888888888888888877653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.04 Score=52.35 Aligned_cols=162 Identities=18% Similarity=0.084 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 350 NALVDMYAKCGSLDNAMSVFNGMTKK-------DLVSWNAMLYGLAM---HGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 350 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
..++-.|....+++...++.+.+... ....--..+-++.+ .|+.++|+.++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666777777776666533 11222233344455 677777777777755544566666766665
Q ss_pred HHhcc---------cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHH----HHHHHH---HhC-------CC
Q 037404 420 CACTH---------AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK----EALRLV---QSM-------PV 476 (605)
Q Consensus 420 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~ 476 (605)
+.|-. ....++|+..|.+.- .+.|+...--.++-.+...|... +..++- ... ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 54422 224667777777663 34455443333333344444311 222221 111 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
..+-..+.+++.++.-.|++++|.+.++++.+..|+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 34566777888999999999999999999999876654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00046 Score=43.16 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
.++..+...|.+.|++++|+++++++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788999999999999999999999999999998888764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=60.27 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++..+..++.+.+++.+|++...++++.+|+|..+++.-+.++...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 345667777788888888888888888888888888888888888888888888888888873
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0036 Score=47.10 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccC--------CHHHHHHHHHHhHHhhCCCCchH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGF-GPDKYTFVGVLCACTHAG--------FIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
+....|..+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. ++-+.+.+|+.+.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 334456667777999999999999999999 899999999998876543 34567788899988 58999999
Q ss_pred HHHHHHHHhhh
Q 037404 450 HYGCMIDLLGR 460 (605)
Q Consensus 450 ~~~~l~~~~~~ 460 (605)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.15 Score=48.05 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=49.8
Q ss_pred HccCchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHH---HHHHHHHcCChHH
Q 037404 322 AESGLLGLGMKVHASINKY---RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA---MLYGLAMHGQGEK 395 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~ 395 (605)
.+.|++..|.+.|.+.+.. +..++...|........+.|+.++|+.--+....-|...... -..++...+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555432 234455566666666777777777777777666655543222 2334555667777
Q ss_pred HHHHHHHHHHC
Q 037404 396 ALGLFSRMKDE 406 (605)
Q Consensus 396 A~~~~~~m~~~ 406 (605)
|.+-+++..+.
T Consensus 340 AV~d~~~a~q~ 350 (486)
T KOG0550|consen 340 AVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHhh
Confidence 77777766554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0033 Score=60.82 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=95.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037404 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK------DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414 (605)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 414 (605)
+.+.+......+++......+++.+..++.+.... -..+..++++.|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556666777888888888888888888766522 235667999999999999999999999889999999999
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
++.|+..+.+.|++..|.++...|.. .....+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988877 35666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.2 Score=46.92 Aligned_cols=77 Identities=12% Similarity=-0.030 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHH----HhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCh
Q 037404 93 NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK----ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168 (605)
Q Consensus 93 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (605)
.|+++.|.+-|+.|... +.|-..=++ ..-+.|+.+.|+++-+.....-. .=.+.+..++...+..| ++
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~g--dW 204 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAG--DW 204 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcC--Ch
Confidence 45556666666655532 222111112 22345555555555554443221 12344455555555555 55
Q ss_pred HHHHHHHhc
Q 037404 169 SLAKKLFMS 177 (605)
Q Consensus 169 ~~a~~~~~~ 177 (605)
+.|+++++.
T Consensus 205 d~AlkLvd~ 213 (531)
T COG3898 205 DGALKLVDA 213 (531)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.026 Score=49.76 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=86.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhc-
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTK--K----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACT- 423 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~- 423 (605)
...+...|++++|.+.|+.+.. | -....-.++.++.+.|+++.|...++++.+. -|+. ..+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3444555666666666665542 1 1134445566677777777777777776654 2221 11221111111
Q ss_pred ------------ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037404 424 ------------HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491 (605)
Q Consensus 424 ------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 491 (605)
..+...+|...| ..++..|=......+|...+..+...- ..--..++..|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 111122233333 333444444444455555444431000 111123567788
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHH
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+.|.+..|..-++.+++..|+.+ .++..++.+|.+.|..+.|..
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999888875 456778888999999885543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.24 Score=47.35 Aligned_cols=443 Identities=16% Similarity=0.147 Sum_probs=206.5
Q ss_pred HHHhhcCCchHHHHHHHHHHHhCCCCCC------cchHHHHHHHhccCChhHHHHHhcccCC-CCcccHHHHHHH--HHh
Q 037404 22 QNLHKCKNLNQTKQLFAQIIKLDLQRDP------YIAPKLISSLALCRQMGLAIKVFNDIQD-PDVHLYNTLIRA--CVQ 92 (605)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~--~~~ 92 (605)
..|.+.+++.++..+|..+.+.- ..++ ..-+.++++|.. .+.+.....+....+ -....|-.+..+ +.+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 46778899999999998888763 2332 233567777763 455555555444432 113345555443 346
Q ss_pred CCCchHHHHHHHHHHhC--CCCC------------CcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCC----CCcchhh
Q 037404 93 NSLNAQAFRVFLDMQEK--GVFT------------DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF----GDIFVPN 154 (605)
Q Consensus 93 ~~~~~~a~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 154 (605)
.+.+..|++.+....++ +..| |-..=+.....+...|.+.+++.++..+...=++ .+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888898888777655 3222 1111223344567888999998888887765433 6777888
Q ss_pred HHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcC-----CC
Q 037404 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA-----GE 229 (605)
Q Consensus 155 ~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~-----~~ 229 (605)
.++-++++.- - .++-+.+...=...|..++-.|.+.=+.-++.. +++ ..|.......++....-. .-
T Consensus 172 ~~vlmlsrSY--f----LEl~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k-~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 172 RAVLMLSRSY--F----LELKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEK-FIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHhHHH--H----HHHHHhcccccChHHHHHHHHHHHHHHHHhhch-HHh-hCcHHHHHHHHHHHHHhCCHhhccH
Confidence 7777776543 1 111111111111234444444433211111100 000 011111111111111110 00
Q ss_pred hHHHHHHHHhC-CCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCcccHHHHHHHHHhCCChHHHHHHH
Q 037404 230 MNLAFELFEKI-PHRNI-VSWSTMVWGYSKDGDMEMAKLLFDRMP--------AKTLVPWTIIISGYAEKGMAKEAARLY 299 (605)
Q Consensus 230 ~~~a~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (605)
+-++.+.++.- ..|+. .+...|..-+.+ +.+++..+-+.+. +.=+.++..++....+.++..+|...+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11122222211 11221 222233333332 3333333332221 112223666666777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHH-------HHHH-ccCc---hHHHHHHHHHHHHcCCCCChhHHHHHH---HHHHhcCC-hHH
Q 037404 300 DQMEEAGLKPDDGTLISIL-------AACA-ESGL---LGLGMKVHASINKYRFKCNTNVCNALV---DMYAKCGS-LDN 364 (605)
Q Consensus 300 ~~m~~~~~~p~~~~~~~ll-------~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~ 364 (605)
.-+.- +.|+...-..++ ...+ ...+ ...-..++..+...++.. .....-|+ .-+.+.|. -++
T Consensus 322 ~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHH
Confidence 65554 234433211111 1111 1111 112223333333333221 11111222 22344444 666
Q ss_pred HHHHHhcCC---CCChhHHHHHHH----HHHH---cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--hcccCCH
Q 037404 365 AMSVFNGMT---KKDLVSWNAMLY----GLAM---HGQGEKALGLFSRMKDEGFGPDKY----TFVGVLCA--CTHAGFI 428 (605)
Q Consensus 365 A~~~~~~~~---~~~~~~~~~l~~----~~~~---~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~--~~~~g~~ 428 (605)
|.++++.+. +.|..+-|.+.. .|.+ ...+.+-+.+-+-+.+.|+.|-.. .-+.+..+ +...|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 777766554 234433333221 2221 223334444444455566665322 23333322 4456777
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 037404 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484 (605)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 484 (605)
.++.-.-.-+. .+.|++.+|..++-++....++++|..++..++ |+..+++
T Consensus 479 ~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 479 HKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 77665444442 466777777777777777777777777777765 4555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=45.95 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=51.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhh
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLG 459 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 459 (605)
...++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566667777777777777776655432 3445555666677777777777776665321100 2222223344555
Q ss_pred hcCCHHHHHHHHHh
Q 037404 460 RSGRLKEALRLVQS 473 (605)
Q Consensus 460 ~~g~~~~A~~~~~~ 473 (605)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=53.89 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=73.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLL 487 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 487 (605)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..++..|...|++++|...|+.+ ...|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 355555444566888888888888877421111 1346677888888899999999888887 22222 44555667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.++...|+.++|...|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7788899999999999999999888763
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.24 Score=46.79 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=46.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 037404 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295 (605)
Q Consensus 216 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (605)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-.++-.. ++.+..|..++..|...|+..+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 3444455555556666666665555556666666666666666666655554433 34445555566666665655555
Q ss_pred HHHHHH
Q 037404 296 ARLYDQ 301 (605)
Q Consensus 296 ~~~~~~ 301 (605)
..+...
T Consensus 257 ~~yI~k 262 (319)
T PF04840_consen 257 SKYIPK 262 (319)
T ss_pred HHHHHh
Confidence 555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.035 Score=48.67 Aligned_cols=131 Identities=9% Similarity=0.006 Sum_probs=83.3
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHH
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--------PVEPNAIIWGTLL 487 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~ 487 (605)
+.++.+....|.+.-....+.+.++ ...+.++.....|+..-.+.|+.+.|...|+.. ++..+..+.....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444444555555556666666655 233445555556666666666666666666633 1222333333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
..+.-++++..|...+.+..+.+|.++...+.-+-++.-.|+..+|++.++.|.+..+.+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 455666788888888888888888888877777777777888888888888888765433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0023 Score=45.53 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=52.4
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
...|.+.+++++|.+.++.+ ...| +...+...+.++...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35678889999999999887 4444 455777788889999999999999999999999877655443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0088 Score=56.04 Aligned_cols=139 Identities=12% Similarity=-0.033 Sum_probs=101.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
...|.+.|++..|...|++.... +. +.+.-+.++..... . .-..+++.+..++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 45677777777777777766541 00 11111112211111 1 123467788899999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH-HHHHHHH
Q 037404 464 LKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV-ANVRLQM 540 (605)
Q Consensus 464 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 540 (605)
+.+|++...+. . .++|...+-.-..++...|+++.|+..|+++++++|.|..+...++.+-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 3 3456778888899999999999999999999999999999999999888777766554 8999999
Q ss_pred HhCC
Q 037404 541 KKTR 544 (605)
Q Consensus 541 ~~~~ 544 (605)
....
T Consensus 353 F~k~ 356 (397)
T KOG0543|consen 353 FAKL 356 (397)
T ss_pred hhcc
Confidence 8753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.09 Score=46.31 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFG--PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (605)
-.....+...|++++|...|+++...... --......++.++.+.|+++.|...++..++.+.-.|... +.....+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~ 87 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGL 87 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHH
Confidence 33445566677777777777777764211 1123445566667777777777777777766433333221 11111111
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----------------hHHHHH
Q 037404 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-----------------NYTMLS 521 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l~ 521 (605)
+..+...... ......+...+|...++.+++..|+++- .-..++
T Consensus 88 ~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000 0011223344555666666665666542 234578
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..|.+.|.+..|..-++.+++.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8999999999999999999984
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.63 Score=48.61 Aligned_cols=116 Identities=7% Similarity=0.103 Sum_probs=67.9
Q ss_pred HHHHHHHhcccCCHH---HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCC---CCCHHHHHHHHH
Q 037404 415 FVGVLCACTHAGFID---KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV---EPNAIIWGTLLG 488 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~l~~ 488 (605)
.+.++..|.+.++.. +|+-+++.... .-+.|..+--.++..|.-.|-+..|.++|+.+.+ ..|...+ .+..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHH
Confidence 345667777777655 34444444433 2233444455678888888888888888888843 3333222 2234
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
-+...|++..+...+....+...++-.-...++..-.+.|.+..-
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI 560 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKI 560 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhh
Confidence 455678888888888888887544332222333333455555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.052 Score=47.69 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhH-----HHHHHH
Q 037404 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV-----CNALVD 354 (605)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~ 354 (605)
+.++..+...|.+.-.+..+++.++...+.++.....+.+...+.||.+.|..+++...+..-..+... ......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 345556666777777778888887766566666777777777788888888888876665432323222 223333
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 414 (605)
.|.-.+++..|...+.++.. .|+..-|.-.-+..-.|+..+|++.++.|... .|...+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 45556677777777766653 34444444444455567777777777777764 444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.51 Score=47.03 Aligned_cols=410 Identities=12% Similarity=0.009 Sum_probs=209.0
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc-HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHH
Q 037404 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT-YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156 (605)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (605)
-+...|..||.---...+.+.+..++..++.. .|--+- |......=.+.|..+.+..+|+..+. |++-+...|..+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556777776554555556667777777654 333332 22222223466778888888887776 455555666666
Q ss_pred HHHHHhcCCCChHHHHHHHhccCC------CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHc---C
Q 037404 157 IDSYSKCGVVGVSLAKKLFMSMGE------RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK---A 227 (605)
Q Consensus 157 ~~~~~~~g~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~---~ 227 (605)
+..+.... .+.+...+.|+.... .+...|...|..-..++++.....++++..+-...-|+..-.-|.+ .
T Consensus 120 ~~f~~n~~-~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 120 LAFLKNNN-GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHhccC-CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 55554432 166667777765543 2444677777776777777777777777744333333322221111 0
Q ss_pred ------CChHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 037404 228 ------GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG-DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 228 ------~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
...+.+.++-...... ..-...+ ..+......+....+. +..+++...+.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~~~~~l~ 255 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAER---------SKITHSQEPLEELEIGVKDSTDPS--------------KSLTEEKTILK 255 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhh---------hhcccccChhHHHHHHHhhccCcc--------------chhhHHHHHHH
Confidence 0111111110000000 0000000 0111111111111111 01111111111
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC---C----CCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 037404 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR---F----KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373 (605)
Q Consensus 301 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 373 (605)
+.... --..+...-........++.-.+.. + +.+...|...+..-...|+.+.+.-+|+...
T Consensus 256 ~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl 324 (577)
T KOG1258|consen 256 RIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL 324 (577)
T ss_pred HHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH
Confidence 11000 0000001111111111122211110 1 1234556667777778888888888888776
Q ss_pred CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hH
Q 037404 374 KK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VE 449 (605)
Q Consensus 374 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 449 (605)
-| -...|--.+.-....|+.+-|..++....+--++-.+.+-..-...+...|+++.|..+++.+..+ . |+ ..
T Consensus 325 i~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~ 401 (577)
T KOG1258|consen 325 IPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVE 401 (577)
T ss_pred hHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-Cchhh
Confidence 44 224455555555555888888877776665433333332222223355678999999999999884 4 54 33
Q ss_pred HHHHHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEAL---RLVQSM-PVEPNAIIWGTLLG-----ACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
.-..-+....+.|+.+.+. +++... +..-+..+...+.- .+.-.++.+.|..++.++.+..|++...|..+
T Consensus 402 ~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 402 VVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred hHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 3334455667888888887 555444 22222222222221 23345789999999999999999999999988
Q ss_pred HHHHHhcC
Q 037404 521 SNIFAATG 528 (605)
Q Consensus 521 ~~~~~~~g 528 (605)
.......+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 88876665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0082 Score=53.38 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-------PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTM 519 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~ 519 (605)
.|+.-+. +.+.|++.+|...|... ...|+...| |+.++...|+++.|...|..+.+..|++ |+.+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4554443 44667788888777765 133455555 7888888888888888888888876654 456888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037404 520 LSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|+.+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888889999999888888874
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.19 Score=50.04 Aligned_cols=194 Identities=17% Similarity=0.160 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
-+.+.-++++.+.|-.|+... +...|+-.|.+.+|.++|.+--.. +..+.+|....-++.|.+++...
T Consensus 617 L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 344445566777776677654 334556677777777776543221 22344454445555555554332
Q ss_pred CCC--------------ChhHHHHHHHHHHHcCChHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHhcccCCHH
Q 037404 373 TKK--------------DLVSWNAMLYGLAMHGQGEKALGLFS------RMKDEGFG---PDKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 373 ~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~------~m~~~g~~---p~~~~~~~ll~~~~~~g~~~ 429 (605)
... ++.-=.+....+...|+.++|..+.- -+.+-+-+ .+..+...+..-+.+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 210 11111122333445566666554421 11111111 23344555555555666677
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHH-----------HHHHHHHHHHhcCCHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-VEPNAI-----------IWGTLLGACRKHNAVE 497 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-----------~~~~l~~~~~~~g~~~ 497 (605)
.|-++|.++-. ...+++.....+++++|..+-++.+ ..||.. -|...-.+|.+.|+..
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 77777777633 2456777788888888888888773 334332 1222335566666666
Q ss_pred HHHHHHHHHHh
Q 037404 498 LAEEVLDCLIR 508 (605)
Q Consensus 498 ~A~~~~~~~~~ 508 (605)
+|.++++++..
T Consensus 835 EA~~vLeQLtn 845 (1081)
T KOG1538|consen 835 EAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHhhh
Confidence 66666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0027 Score=45.89 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-------P-VEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.+++.+...|...|++++|++.|++. + ..|+ ..++..++.++...|++++|+++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666666777777777777666655 1 1122 456777888888888888888888888764
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.093 Score=47.54 Aligned_cols=105 Identities=15% Similarity=0.016 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG---RLKEALRLVQSM-PVEP-NAIIW 483 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 483 (605)
+-|...|..|...|...|+.+.|...|....+ -.++++..+..+..++..+. +..++..+|+++ ..+| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34677888899999999999999999998877 34556667777777665443 466888899988 4444 45577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
..|...+...|++.+|...++.+++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 77788899999999999999999998876543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.037 Score=51.80 Aligned_cols=132 Identities=8% Similarity=-0.021 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHh---hCC-CCch
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRM----KDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERD---YGI-LPQV 448 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~ 448 (605)
..|..+...|.-.|+++.|+..-+.- ++-|-+. ....+..+..++.-.|+++.|.+.|+....- .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666677778888888765432 2223111 2345777888888899999999888765431 111 1234
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-------P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.+..+|...|.-..++++|+.++.+- + .--....+.+|..++-..|..++|..+.+..++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45667888888888889998887643 1 1124567778889999999999999988887765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.4 Score=47.91 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=56.4
Q ss_pred hcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 358 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
..|-.+.+.++-.++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-++
T Consensus 728 d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 3334444444444444444455555555555566666777777766542 3456667777888888777666
Q ss_pred hHHhhCCCCchHH-----------HHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 438 MERDYGILPQVEH-----------YGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 438 ~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
..+ +.|++.. |.-.-.+|.+.|+-.+|.++++++
T Consensus 799 hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 799 HPE---FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred Ccc---ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 533 3333221 111223455555555555555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.62 Score=44.61 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=96.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
-..+|.+.+..-.+....+.|..+|-+..+.| +.++...+++++..+ ..|+..-|..+|+.-.. .++.+...-+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34567777777777788888888888888887 556777777777654 45777788888877655 233333333456
Q ss_pred HHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 455 IDLLGRSGRLKEALRLVQSM--PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
+.-+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.+..|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777888888888888865 22223 5577777777777888888888888888877764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.019 Score=49.16 Aligned_cols=88 Identities=9% Similarity=0.160 Sum_probs=64.2
Q ss_pred CCcccHHHHHHHHH-----hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CchHHHHH
Q 037404 274 KTLVPWTIIISGYA-----EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES----------------GLLGLGMK 332 (605)
Q Consensus 274 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~~ 332 (605)
++..+|..++..|. +.|..+=....++.|.+-|+.-|..+|+.|+..+=+. .+-+.|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 33344444444444 3466777777888888888888888888888876542 24467888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 333 VHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 89999999999999999988888866543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.03 Score=48.00 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=54.2
Q ss_pred CCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----------------CHHHHH
Q 037404 374 KKDLVSWNAMLYGLAM-----HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG----------------FIDKGV 432 (605)
Q Consensus 374 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~a~ 432 (605)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4455666666666654 3566667777888888898889999999988776521 122344
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhhcC
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSG 462 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (605)
+++++|.. +|+.||.+++..+++.+++.+
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 55555544 355555555555555444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.071 Score=42.70 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch---HHHHHHHHH
Q 037404 454 MIDLLGRSGRLKEALRLVQSM----PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN---YTMLSNIFA 525 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~ 525 (605)
-+....+.|++++|.+.|+.+ +..| ....-..++.++.+.|++++|...+++.++++|.++.+ +...|-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 345556888999999998887 2222 23455678899999999999999999999999988753 445555555
Q ss_pred hcCC---------------hHHHHHHHHHHHhC
Q 037404 526 ATGD---------------WNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~---------------~~~A~~~~~~~~~~ 543 (605)
++.. ..+|..-|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5544 66777777777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.013 Score=48.62 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..++..+...|++++|...+++++..+|.+...|..++.+|...|+..+|.++|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556777788899999999999999999999999999999999999999999999999864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.12 Score=46.60 Aligned_cols=120 Identities=9% Similarity=0.057 Sum_probs=78.9
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT---LLGACRKHNAVE 497 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 497 (605)
.....|+..+|...|..... -.+-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 35567788888888887776 3344456666788888888888888888888853322222222 233333333333
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...+-.+ ...+|+|...-..++..+...|+.++|.+.+=.+..+
T Consensus 221 ~~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333332 3338888888888888888889988888888777764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.041 Score=42.56 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=70.7
Q ss_pred HHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCC---chHHHHHHHHHhcC
Q 037404 455 IDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-GSDP---GNYTMLSNIFAATG 528 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g 528 (605)
..++...|+++.|++.|.+. . .+..+..||.-..++.-.|+.++|+.-+.+++++. |... ..|..-+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34567788999999998876 2 33457788888999999999999999999999885 3322 23556677888889
Q ss_pred ChHHHHHHHHHHHhCCC
Q 037404 529 DWNKVANVRLQMKKTRA 545 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~~ 545 (605)
+.+.|..-|+...+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998888664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.26 Score=38.47 Aligned_cols=140 Identities=11% Similarity=0.162 Sum_probs=86.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
..-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+ ..| ...+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFD----------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK----IFD----------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-----------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh----hcC----------chhhcchHH
Confidence 34567788888888877763 2445566665444444444444555555433 222 134566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
....+-.++ .+.......+.....+|+-+.-.+++..+.+....+|..+.-++.+|.+.|+..++-+++.++=+.|+
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 666665554 34555666778888999999999999998876677789999999999999999999999999988875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.69 Score=41.70 Aligned_cols=197 Identities=17% Similarity=0.105 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT-----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 420 (605)
..........+...+++..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3445555666666666666666665543 2234455555666666677777777777776643222 111222222
Q ss_pred -HhcccCCHHHHHHHHHHhHHhhCC--CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 037404 421 -ACTHAGFIDKGVQYFYSMERDYGI--LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN--AIIWGTLLGACRKHN 494 (605)
Q Consensus 421 -~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g 494 (605)
.+...|+++.|...+..... ... ......+......+...++.+++...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 57777888888888877743 111 122333444444466777888888887776 33333 566777777777788
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+++.|...+..+....|.....+..++..+...|.++++...+.+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888777755666677777666677888888888877753
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.085 Score=51.03 Aligned_cols=63 Identities=3% Similarity=-0.130 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.....++.+....++++.|...|+++..++|+.+.++...+++..-.|+.++|.+.+++..+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444444444444455555555555555555555555555555555555555555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.027 Score=54.27 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA----IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
.+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|++++|+..++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 34667788888888888888888888875 556663 34788888888888888888888888886211 12111
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhCCC
Q 037404 521 SN--IFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 521 ~~--~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.. .+....+.++..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 11 12223344566666666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.27 Score=49.48 Aligned_cols=161 Identities=13% Similarity=0.061 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhcc----cCCHHHHHHHHHHhHHhhCCCCchH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDK-----YTFVGVLCACTH----AGFIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3344455555667777777766655422 11111 123333333332 45677888888888763 35544
Q ss_pred HHH-HHHHHhhhcCCHHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH-HHH
Q 037404 450 HYG-CMIDLLGRSGRLKEALRLVQSMP-V-----EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT-MLS 521 (605)
Q Consensus 450 ~~~-~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~ 521 (605)
.|. .-...+...|++++|++.|+++- . +.....+--++..+.-..++++|...+.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 444 34566778899999999998752 1 112334555677788889999999999999987655555544 444
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHhC
Q 037404 522 NIFAATGDW-------NKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~-------~~A~~~~~~~~~~ 543 (605)
-++...|+. ++|.+++.++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556788888 8888888888764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.1 Score=44.53 Aligned_cols=154 Identities=19% Similarity=0.138 Sum_probs=90.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 464 (605)
|-..|-++-|.--|.+... +.|+. ..||.+.--+...|+++.|.+.|+...+ +.|. ..+...-.-++.-.|++
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR~ 149 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGRY 149 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCch
Confidence 4444555555555665554 56754 5688777778899999999999998865 3443 22333333345567888
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHH--------------HHHHhcCC--HH-----------HHHHHHHHHHhhcCCC
Q 037404 465 KEALRLVQSM----PVEPNAIIWGTLL--------------GACRKHNA--VE-----------LAEEVLDCLIRLKGSD 513 (605)
Q Consensus 465 ~~A~~~~~~~----~~~p~~~~~~~l~--------------~~~~~~g~--~~-----------~A~~~~~~~~~~~p~~ 513 (605)
.-|.+-+... +..|-...|.-+. .-+..+.+ +. ..+.+++++..-..++
T Consensus 150 ~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 150 KLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 8887766554 3333333332222 11111110 00 0112222322222222
Q ss_pred -------CchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 514 -------PGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 514 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..+|+.|++-+...|+.++|..+++-.+..++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 25789999999999999999999999887543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.069 Score=49.23 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC----CchHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKD-EGFGPD---KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL----PQVEH 450 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~ 450 (605)
.|..+.+++-+..++.+++.+-+.-.. .|..|. .....++..+....+.++++.+.|+.+.+-..-. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444333222 122221 1223345556666667777777777665421111 12345
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLK------GS 512 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~ 512 (605)
+-.|...|.+..++++|+-+..++ ++..- ......+.-++...|....|.+..+++.++. +.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 667777777777777766555443 21111 1123334456667777777777777776652 22
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 513 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.......++++|...|+.+.|..-|+++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 334455677777777777777777766654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.074 Score=47.50 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=67.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC---chHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-HHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILP---QVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN-AIIWGT 485 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ 485 (605)
.|+.-+. +.+.|++..|...|...++ +.+- ....+-.|++.+...|++++|..+|..+ +..|- +..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3444443 3455667777777777766 3332 2344556777888888888888777766 32232 456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
|..+..+.|+.++|...|+++.+..|..+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777888888888888888888888876654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.73 Score=41.81 Aligned_cols=173 Identities=14% Similarity=0.036 Sum_probs=114.6
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 364 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
...+++++...+....-..-.......|++.+|..+|+...... .-+...-..+..+|...|+.+.|..++..+-.+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44455555554422222233445677899999999999888753 234566677888999999999999999887542 1
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHH
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTML 520 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 520 (605)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111122233455555555555555555553345 56666778888999999999999988888764 4567788889
Q ss_pred HHHHHhcCChHHHHHHHH
Q 037404 521 SNIFAATGDWNKVANVRL 538 (605)
Q Consensus 521 ~~~~~~~g~~~~A~~~~~ 538 (605)
+.++.-.|.-+.+...+.
T Consensus 279 le~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 279 LELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999888886665444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.16 Score=41.74 Aligned_cols=85 Identities=8% Similarity=-0.071 Sum_probs=40.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
+...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|+..|..+.. .. .-|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHH
Confidence 344555555555555554432 11333344444445555555555555554433 11 1222233334455555555555
Q ss_pred HHHHHHhC
Q 037404 467 ALRLVQSM 474 (605)
Q Consensus 467 A~~~~~~~ 474 (605)
|...|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=2.6 Score=44.39 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
...++++.+...+..+-......+...+-+++++...|+.++|..+|+++
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455544444444433322233344445555544455555555555554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.92 E-value=5.1 Score=47.21 Aligned_cols=310 Identities=11% Similarity=0.031 Sum_probs=171.3
Q ss_pred HHHHHHcCCChHHHHHHHHhC----CCCC--hhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCcccHHHHHHHHHhCCCh
Q 037404 220 ILDGYAKAGEMNLAFELFEKI----PHRN--IVSWSTMVWGYSKDGDMEMAKLLFDR-MPAKTLVPWTIIISGYAEKGMA 292 (605)
Q Consensus 220 ll~~~~~~~~~~~a~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 292 (605)
+..+-.+.+.+..|.-.++.- .+.+ ...+..+...|...+++|...-+... ..++ +....|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 344555667777777777762 2222 23455566688888888887777663 2222 233455566778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
..|...|+.+.+.+ ++...+++.++......|.++...-..+-......+-....++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 99999999998764 333667777777777777777666554444332222122333444555577788887777665
Q ss_pred CCCChhHHHHH--HHHHHHcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHhcccCCHHHHHHHHHHhH
Q 037404 373 TKKDLVSWNAM--LYGLAMHG--QGEKALGLFSRMKDEGFGP--------D-KYTFVGVLCACTHAGFIDKGVQYFYSME 439 (605)
Q Consensus 373 ~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (605)
..+..+|... +....+.. +.-.-.+..+.+++.-+.| + ...|..++....- .++-....
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELENSIE 1614 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4455555544 23332222 2112222333333321111 0 0122222221110 01111111
Q ss_pred HhhCCCCchH------HHHHHHHHhhhcCCHHHHHHHHHhC----CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037404 440 RDYGILPQVE------HYGCMIDLLGRSGRLKEALRLVQSM----PVE-----PNAIIWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 440 ~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
...++.++.. .|..-+..-....+..+-+--+++. ..+ --..+|...++.....|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1112233211 1222221111111111111111111 112 235688889999999999999999998
Q ss_pred HHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.+.+.. -+.++...+..++..|+-..|+.++++..+...
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888876 466889999999999999999999999997654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.2 Score=39.98 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhHHHHHHH-H
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KD-LVSWNAMLY-G 386 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~-~ 386 (605)
.........+...+++..+...+...... ........+......+...++...+.+.+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44445555555566666665555555432 2233344555566666666777777777776553 21 122333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhc
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGP----DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRS 461 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 461 (605)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8888999999999998855 233 233344444456778899999999999877 3344 467788888889999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 462 GRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 462 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999887 44454 445555555566777899999999999998877
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.32 Score=39.10 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=56.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGF--GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
.....+.|++++|.+.|+.+...-. .-....-..++.+|.+.+++++|...+++.++-+.-.|++ -|.....+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3344456666666666666665411 1122344555666666666666666666666532222221 233333332222
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 462 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
...+..+.-+- +.+ ...+....|..-|+++++..|++.-
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 21111111110 111 1112356788888999988888763
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.035 Score=32.10 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
.+..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666677777777777777777766653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.88 Score=39.90 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC----CCCchHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG----ILPQVEHYGCM 454 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l 454 (605)
.|+--...|...|.++.|-..+++.-+. ...-++++|+++|++...-.. ..--...+...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3444455666666666666555554321 122234444444444332100 00112234445
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCCCchHHHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQSMP-------VEPNA-IIWGTLLGACRKHNAVELAEEVLDCLIRL----KGSDPGNYTMLSN 522 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~ 522 (605)
...+.+..++++|-..+.+-+ --|+. ..+...+-.+....++..|...++.-.++ .|.+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 556667777777666655441 11222 23444444555566788888888776654 3555666666766
Q ss_pred HHHhcCChHHHHHHH
Q 037404 523 IFAATGDWNKVANVR 537 (605)
Q Consensus 523 ~~~~~g~~~~A~~~~ 537 (605)
.| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 55 567777666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.58 Score=45.54 Aligned_cols=143 Identities=11% Similarity=0.045 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhc---------ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 393 GEKALGLFSRMKD-EGFGPDK-YTFVGVLCACT---------HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 393 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
.+.|+.+|.+... ..+.|+. ..|..+..++. ...+..+|.++-+...+ --+-|......++.++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4567777777662 2245543 23333332221 12345566777777766 3445677777778877888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH--HHHHHHHhcCChHHHHHHH
Q 037404 462 GRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT--MLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 462 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~ 537 (605)
|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++++++.|....+-. ..++.|+.. ..++|+.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 8899999999988 55666 457777777788889999999999999999987654433 333445544 456677766
Q ss_pred H
Q 037404 538 L 538 (605)
Q Consensus 538 ~ 538 (605)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.13 Score=42.62 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH----hhCCCCchHHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER----DYGILPQVEHY 451 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 451 (605)
...++..+...|++++|..+++++.... +.+...+..++.++...|+...|.+.|+.+.. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666777777777777777642 33556677777777777777777777766543 34666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.4 Score=39.27 Aligned_cols=168 Identities=13% Similarity=0.099 Sum_probs=93.2
Q ss_pred HHHhcCChHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcc---
Q 037404 355 MYAKCGSLDNAMSVFNGMTKKD------LVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTH--- 424 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~--- 424 (605)
.-.+.|++++|.+.|+.+.... ..+.-.++.++.+.++++.|+..+++..... -.||. .|...+.+.+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcc
Confidence 3456677777777777766321 2344455666777788888888887766642 22322 23333333221
Q ss_pred ----cCCHHH---HHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCC
Q 037404 425 ----AGFIDK---GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII--WGTLLGACRKHNA 495 (605)
Q Consensus 425 ----~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~ 495 (605)
..+... |..-|+..+.+ . || ..-...|..-+..+. |... =..+..-|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~r--y-Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQR--Y-PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHH--C-CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 112222 22333333331 1 11 111112222111110 1111 1245677889999
Q ss_pred HHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 496 VELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+..|..-++++++..|+.+ ..+..+..+|.+.|-.++|...-+-+..
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999999999866554 4566777889999999999887554443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.027 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.017 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.69 E-value=1 Score=43.09 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---Ccc-c---HHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 250 TMVWGYSKDGDMEMAKLLFDRMPAK---TLV-P---WTIIISGYAE---KGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 250 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~---~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
.++-+|-...+++...++++.+... +.. . --...-++.+ .|+.++|+.++..+......++..++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666665533 111 1 1123334445 7788888888877665555667777766655
Q ss_pred HH
Q 037404 320 AC 321 (605)
Q Consensus 320 ~~ 321 (605)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.056 Score=45.36 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=66.2
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEPN------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
..-+.+.|++++|..-|..+ ...|. ...|..-..++.+.+.++.|+.-..+++++.|....++..-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34456777788877777665 21121 233444456677888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhCCC
Q 037404 528 GDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~~~ 545 (605)
.++++|++-|+++.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 888888888888888543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.23 Score=39.37 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 408 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555555555555555555555555555554454444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.5 Score=44.13 Aligned_cols=176 Identities=14% Similarity=0.069 Sum_probs=109.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
...-++...+...++-|..+-+.-....... ......-+.+.|++++|...|-+-+.. +.|. .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4455666677777777777766543221111 233344556788888888888776543 3332 344555666
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL-VSWNAMLYGLAMHGQGEKALGLFSRM 403 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m 403 (605)
.....-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+...+... .-....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6666777777777777765 556667888999999998888888776652211 12445566666667777776665544
Q ss_pred HHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHh
Q 037404 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438 (605)
Q Consensus 404 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (605)
.. +......+ +...+++++|.++++.+
T Consensus 490 ~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 32 22233333 45677888888888765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.19 Score=45.96 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=119.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH----HHHHHHhhhcCC
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY----GCMIDLLGRSGR 463 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 463 (605)
...|++.+|-..++++.+. .+.|...+...=.+|...|+...-...++++.- ...++...| ..+..++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999998885 455777788888899999999999999998876 445555433 345556678999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCchHHHHHHHHHhcCChHHHHHHH
Q 037404 464 LKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS----DPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
+++|++.-++. .+. .|...-.+....+.-.|++.++.++..+-...=.. -...|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999987 443 45667777888888889999999998775432111 1234556777788889999999999
Q ss_pred HHHHhCCCCCCCc
Q 037404 538 LQMKKTRAQKPSG 550 (605)
Q Consensus 538 ~~~~~~~~~~~~~ 550 (605)
++-+-.....+.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9887655554444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=4.5 Score=42.38 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=95.2
Q ss_pred HHHHHHhhcCCch----HHHHHHHHHHHhC------------CCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcc-
Q 037404 19 EKLQNLHKCKNLN----QTKQLFAQIIKLD------------LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH- 81 (605)
Q Consensus 19 ~~~~~l~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 81 (605)
+...++..+++.- -..++.+.+...+ .....-..-.-+..+.+...++-|..+...-.-+.-.
T Consensus 288 ~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~ 367 (933)
T KOG2114|consen 288 RIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTL 367 (933)
T ss_pred heeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHH
Confidence 4455555555442 2245555555555 1111223334566667777777777776654321111
Q ss_pred --cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 037404 82 --LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159 (605)
Q Consensus 82 --~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (605)
....-.+-+.+.|++++|...|-+-... +.| ..+++-+...........+++.+.+.|+. +...-..|+.+
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLnc 440 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHH
Confidence 1222234556678888887777665432 222 23444555555556666677777777654 44445667777
Q ss_pred HHhcCCCChHHHHHHHhccCCCCee-hHHHHHHHHHhCCChhHHHHHHh
Q 037404 160 YSKCGVVGVSLAKKLFMSMGERDIV-SWNSMIAGLVKGGELSEARRLFD 207 (605)
Q Consensus 160 ~~~~g~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 207 (605)
|.+.+ +.+...+..+........ -....+..+.+.+-.++|.-+-.
T Consensus 441 YiKlk--d~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 441 YIKLK--DVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHhc--chHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 77777 777776666665521111 23344444444454444444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.75 Score=45.69 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred HHHHHhCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 283 ISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
.+.....++++.+.+..+.-. -..++ ......++.-+.+.|.++.|.++... + ..-.+...++|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 344455677777666654111 11111 33456677777777877777776432 2 123455677888
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
++.|.++.++.. +...|..|.......|+++-|.+.|++... |..|+-.|...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888877655 566888888888888888888888886543 455666677778877766666665541
Q ss_pred hCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
| -++....++...|+.++..+++.+.+
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 24455555666788888777777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.7 Score=42.66 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHH
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-V-EPNA--IIWGTLLGAC 490 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~ 490 (605)
=..+..++-+.|+.++|++.+.++.++.....+..+...|+.++...+.+.++..++.+-. + -|.. ..|+..+--+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3456677788999999999999998754333355677889999999999999999998873 1 1332 2455444332
Q ss_pred HhcCC---------------HHHHHHHHHHHHhhcCCCC
Q 037404 491 RKHNA---------------VELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 491 ~~~g~---------------~~~A~~~~~~~~~~~p~~~ 514 (605)
...++ -..|.+.+.++.+.+|.-|
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22222 2346788889988887765
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.25 Score=39.21 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=20.4
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHH
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLL 487 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~ 487 (605)
..|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344445555555555555555555544433 3333344444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.1 Score=43.94 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+-..+..++.+.|+.++|++.++++.+..|. +-.+...|+.++...+.+.++..++.+.-+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3345666677778888888888888776654 345677788888888888888888877654
|
The molecular function of this protein is uncertain. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=5.6 Score=41.36 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=45.9
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCC-CCcchHHHHHHHHHc
Q 037404 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAK 226 (605)
Q Consensus 152 ~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~ 226 (605)
+...++..+...| +++.|.+..-.|-..+..-|...+..+...++......++-.-.. -+...|..++..+..
T Consensus 394 v~~~yI~HLl~~~--~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEG--KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcc--hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4556677777777 777777777777777777777777777776665554443332211 244566666666655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.88 E-value=7.4 Score=42.62 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=84.5
Q ss_pred CChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 037404 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276 (605)
Q Consensus 197 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 276 (605)
++++.|+.-+..+. ...|.-.++.--+.|-++.|..++..-.+.-...|.+....+.....+++|.-+|+..-+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 44555554444442 112233333334455555555555433333334444555555556666666655555432
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 037404 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT--LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 354 (605)
...-+.+|...|+|.+|+.+-.++-. .-|... -..|...+...+++-+|-++..+.... ..-.+.
T Consensus 968 --lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ 1034 (1265)
T KOG1920|consen 968 --LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVA 1034 (1265)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHH
Confidence 12235566667888888888776643 112221 145566667777777777776665432 123445
Q ss_pred HHHhcCChHHHHHHHhcCCC
Q 037404 355 MYAKCGSLDNAMSVFNGMTK 374 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~ 374 (605)
.|++...+++|.++......
T Consensus 1035 ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1035 LLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHhhHhHHHHHHHHHHhccc
Confidence 56677777777776655443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.84 E-value=4.1 Score=39.39 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhC-CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYG-ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAII-WGTLLGA 489 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~ 489 (605)
..|...+....+..-.+.|..+|-++.+. + ..+++.++++++..+ ..|+..-|-.+|+-- ..-||... .+-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44666777777788899999999999884 6 677888999998866 467888899999865 33455444 4556677
Q ss_pred HHhcCCHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 490 CRKHNAVELAEEVLDCLIRLKG--SDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+...++-+.|..+|+..++.-. .-..+|..++.--..-|+...+..+=+++.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7788999999999998776532 2356788888888888999888887777765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=3.4 Score=38.48 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037404 488 GACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~ 507 (605)
..+.+.++++.|.+.|+-+.
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33456778888888777554
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.67 E-value=2 Score=35.08 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=50.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChh
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 200 (605)
++..+...+.......+++.+.+.+. .+....+.++..|++.+ .....+.++. ..+......+++.|.+.+.++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~---~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD---PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC---HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 33444334444444444444444432 34444555555555432 2222233331 122223333444444444444
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHcC-CChHHHHHHHHhCCCCChhHHHHHHHHHH
Q 037404 201 EARRLFDEMPERDAVSWNTILDGYAKA-GEMNLAFELFEKIPHRNIVSWSTMVWGYS 256 (605)
Q Consensus 201 ~A~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 256 (605)
++.-++.++.. +...+..+... ++.+.|.+.+.+. .+...|..++..+.
T Consensus 87 ~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 87 EAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 44444444311 11122222222 5555566555542 23445555554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.2 Score=41.45 Aligned_cols=127 Identities=15% Similarity=0.030 Sum_probs=57.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHhcccCCHHHHHHHHHHhHH---hhCCCCch-----H
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGF---GP--DKYTFVGVLCACTHAGFIDKGVQYFYSMER---DYGILPQV-----E 449 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~-----~ 449 (605)
|..++...+.++++++.|+...+-.- .| ....+..|-..|....++++|.-+..++.+ ..++..-. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555555555555555443110 11 113344555555555555555544433322 11211111 1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
....+..++...|.+..|.+..++. +.++. ......+...|...|+.+.|..-|+.+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 1222334455555555555555443 22222 234445556666666666666666665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.92 Score=41.72 Aligned_cols=156 Identities=13% Similarity=0.004 Sum_probs=108.7
Q ss_pred HhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H--HHHHHHHhcccCCHH
Q 037404 357 AKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY--T--FVGVLCACTHAGFID 429 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~--~~~ll~~~~~~g~~~ 429 (605)
...|+..+|-..++++. +.|..++.-.=.+|...|+.+.-...++++... ..|+.. + -..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677777777777776 447778888888999999999999999988764 234442 2 233445567899999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN------AIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
+|++.-++..+ -.+.|.-.-.+....+...|++.++.++..+-...-+ ...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888865 2334555666788888899999999999887632111 122333344456678999999999
Q ss_pred HHHH--hhcCCCCc
Q 037404 504 DCLI--RLKGSDPG 515 (605)
Q Consensus 504 ~~~~--~~~p~~~~ 515 (605)
++-+ +...+|..
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 7633 33455553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.076 Score=32.98 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 514 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
|.++..++.+|.+.|++++|+++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999999654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.077 Score=31.19 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+|..|+.+|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788889999999999999988553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.8 Score=41.75 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=78.8
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 037404 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263 (605)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (605)
...+.++.-+.+.|..+.|+.+-.. . ..-.....+.|+++.|.++.+... +...|..|.+...+.|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 3466777777778888887776543 1 123344556777777777765543 55678888888888888888
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 037404 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334 (605)
Q Consensus 264 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (605)
|++.|.+..+ |..|+-.|...|+.++..++.+.....|- ++....++.-.|+.++..+++
T Consensus 366 Ae~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 366 AEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 8888877653 66677777777777776666666655441 233333444445555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.098 Score=47.84 Aligned_cols=113 Identities=6% Similarity=-0.063 Sum_probs=78.5
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAV 496 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 496 (605)
..-|.++|.+++|+..|...+. -.+-|+.++..-..+|.+..++..|..-...+ .+. --...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4568889999999999988765 23338888888889999999998887766655 211 1123455555555566888
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHH
Q 037404 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
.+|.+-++.++++.|.+- .|-..+.+.....|+.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999854 3444455555555554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.36 E-value=5.4 Score=38.74 Aligned_cols=149 Identities=10% Similarity=-0.054 Sum_probs=83.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP---DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ--VEH 450 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 450 (605)
...+|..++..+.+.|+++.|...+.++...+... .+.....-+...-..|+..+|...++..... ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45677888888888899998888888887643211 2233333445566678888888888777661 11111 111
Q ss_pred HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 451 YGCMIDLLGRSGRLKEALRL-VQSMPVEPNAIIWGTLLGACRKH------NAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
...+...+.. ..+..... ........-...+..+..-+... +..+++...|.++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000122333334444444 788999999999999999988888888877
Q ss_pred HHhc
Q 037404 524 FAAT 527 (605)
Q Consensus 524 ~~~~ 527 (605)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.58 Score=36.78 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-hcCC-CCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce
Q 037404 477 EPNAIIWGTLLGACRKHN---AVELAEEVLDCLIR-LKGS-DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 551 (605)
.++..+--.+.+++.++. +..+.+.+++...+ ..|. .....+.|+-.+.+.|+|+.++.+++...+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-------- 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-------- 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--------
Confidence 455555566777776654 45667777888776 3343 3455667777888888888888888887762
Q ss_pred eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
.|+..+...+=+.+.++|.+.|.+
T Consensus 101 ------------------e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 101 ------------------EPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ------------------CCCcHHHHHHHHHHHHHHhhccee
Confidence 455666666666777777777764
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.8 Score=40.72 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG----SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
....+|..++..+.+.|.++.|...+.++....+ ..|.+....+..+...|+..+|...++...+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3456888899999999999999999999988642 2577788889999999999999999999988433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.54 Score=43.04 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEE
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (605)
..+.+-.+|.+.++++.|.++.+.++...|++|.-+..-|-+|.+.|.+..|..=++...+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P---------------- 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP---------------- 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC----------------
Confidence 4456668889999999999999999999999999999999999999999999999999988532
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHH
Q 037404 562 EFSVCDQLHPKSEQIYQMINTLGKD 586 (605)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~ 586 (605)
..|..+.+...+..++..
T Consensus 247 -------~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 -------EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred -------CchhHHHHHHHHHHHhhc
Confidence 467777788888666543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.45 Score=37.04 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=55.3
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcC
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVE--PNAIIWGTLLGACRKHN 494 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~--p~~~~~~~l~~~~~~~g 494 (605)
+....|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|++-+.+. +-+ .--..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35566777777777777665 34445667777777777777777777766655 211 01123333445566778
Q ss_pred CHHHHHHHHHHHHhhc
Q 037404 495 AVELAEEVLDCLIRLK 510 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~ 510 (605)
+.+.|+.-|+.+-++.
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888777776654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.31 Score=31.54 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 592 (605)
.++.++-++.+.|++++|.+..+.+.+ .+|+..+...+-+.++..+++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 467788899999999999999999998 367777888888888888887763
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.14 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678889999999999999999996654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.07 E-value=11 Score=41.32 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=36.6
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
+.+|...|+|.+|..+...+.. +-.--..+-..|+..+...++.-+|-++..+....|.. .+..+++...+++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHH
Confidence 3445555555555555544422 11111111234555555556666666555554322211 1223344445666
Q ss_pred HHHHHHHHH
Q 037404 499 AEEVLDCLI 507 (605)
Q Consensus 499 A~~~~~~~~ 507 (605)
|.++.....
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 665555443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.16 Score=29.20 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555566666666666666666666666653
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.49 Score=42.28 Aligned_cols=90 Identities=11% Similarity=0.133 Sum_probs=67.6
Q ss_pred CCCcccHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------------chHHHH
Q 037404 273 AKTLVPWTIIISGYAE-----KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG----------------LLGLGM 331 (605)
Q Consensus 273 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 331 (605)
+++..+|...+..|.. .+.++-....++.|.+.|+.-|..+|..+++.+-+.. +-+.+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3444455555555542 3556667777888889999999999999988765542 345678
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 037404 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
.++++|...|+.||..+-..|++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8999999999999999999999999887653
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=2 Score=36.48 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=53.6
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWG-----TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+...+..+|++++|...++..-..|....+. .|.+.....|.+++|...++...... -.+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcC
Confidence 3455667777777777777552122222222 23455666777777777776544311 11223445677778888
Q ss_pred ChHHHHHHHHHHHhCC
Q 037404 529 DWNKVANVRLQMKKTR 544 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~ 544 (605)
+.++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888887777754
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.75 Score=41.21 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=78.6
Q ss_pred HHHHhcCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-----------
Q 037404 366 MSVFNGMT--KKDLVSWNAMLYGLAMH-----GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF----------- 427 (605)
Q Consensus 366 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------- 427 (605)
+..|..+. ++|-.+|...+..+... +..+-....++.|.+-|+.-|..+|..|+..+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 55667777777766543 4566667778899999999999999999988765332
Q ss_pred -----HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHH-HHHHHHHhC
Q 037404 428 -----IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK-EALRLVQSM 474 (605)
Q Consensus 428 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 474 (605)
-+=++.++++|.. +|+.||.++-..|+.++.+.+..- +..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2347889999988 799999999999999999888643 333443333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.13 Score=29.62 Aligned_cols=30 Identities=7% Similarity=0.147 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=6.9 Score=36.41 Aligned_cols=134 Identities=15% Similarity=0.019 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG-FIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
+..+-...+.++.+.++ .+++..+..+.+ .++...-...+.++.+.+ ....+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33333344444444444 344455444444 233333333333333332 12344444444433 2455555556
Q ss_pred HHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 455 IDLLGRSGRLKEALRL-VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
+.++.+.|+. .|... ++.+. .++ .....+.++...|+. +|...+.++.+.+| |+.+-....++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a 276 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDK 276 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHH
Confidence 6666666663 33333 33333 122 223455666666664 56666666666555 44444433333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.20 E-value=3.4 Score=32.55 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
.....+..+...|+-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445667777788887778877776533 67777777778888888888888888877776
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.04 E-value=3 Score=35.66 Aligned_cols=96 Identities=18% Similarity=0.049 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH--HH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG--CM 454 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 454 (605)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+++.....+++..+...+.++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666777777777777777777765444433 2355666677777777777777666654211111111111 11
Q ss_pred --HHHhhhcCCHHHHHHHHHhC
Q 037404 455 --IDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 455 --~~~~~~~g~~~~A~~~~~~~ 474 (605)
+-.+...+++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567888888887766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.8 Score=36.92 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++.+++..++..+.-+.|..+..-..-++++...|+|++|..++....+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555555555555555555555555555555555555555555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.9 Score=37.35 Aligned_cols=71 Identities=18% Similarity=0.058 Sum_probs=41.1
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 459 GRSGRLKEALRLVQSM-PVEPNAIIWGTL-LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
.+.++.+++..+++.+ -.+|.......+ ...+...|++.+|+++++++.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4556666776666666 334444333222 3445666777777777777666556655555555555555555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.16 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+|..++.+|...|++++|+..++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999999854
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.77 E-value=3.3 Score=34.65 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC
Q 037404 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180 (605)
Q Consensus 101 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~ 180 (605)
+..+.+.+.+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+......-..-+..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 445555667777777778888888777777655443 334455555444433332222211101233344444432
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChH
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
..+..++..+...|++-+|+++.+....-+......++.+..+.+|..
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 235556666777777777777776654444444445555555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.75 E-value=8.3 Score=39.07 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHHHHHHhcCCCC-------ChhHHHHHHHHHHHcCChHHHH
Q 037404 326 LLGLGMKVHASINKYRFKCNTNVC-NALVDMYAKCGSLDNAMSVFNGMTKK-------DLVSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~ 397 (605)
+.+.+.+++..+.+.- |+...| -.-.+.+...|++++|.+.|+..... ....+--+.-.+....++++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4455555555555432 222222 22334455556666666666643321 1123333444455566666666
Q ss_pred HHHHHHHHC
Q 037404 398 GLFSRMKDE 406 (605)
Q Consensus 398 ~~~~~m~~~ 406 (605)
..|.++.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.29 E-value=7.7 Score=34.35 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=110.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
-..+|...+++++|...+.+..+. ...+...| .. ...++.|..+.+++.+.. --...|+.-..+|..+|.
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hA------AKayEqaamLake~~kls--Evvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HA------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HH------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCC
Confidence 445666667777777666655431 11111111 11 122344444444444321 123456666777888888
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHhcccCCHHHHHHHHH
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF--GPDK---YTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
++.|-..+++.-+ ...+.++++|+.+|++....=. .-+. ..+...-+.+.+...+++|-..+.
T Consensus 107 pdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 107 PDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred cchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 7777666654321 1234567777777776543200 1111 234445566777777777765554
Q ss_pred HhHHh---hCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHHhC---C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037404 437 SMERD---YGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQSM---P---VEPNAIIWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 437 ~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
+-..- ..--++ -..|...|-.+.-..++..|.+.++.. + ...+..+...|+.+| ..|+.+++..++.
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 43210 111122 234566667777888999999999884 2 123466788888887 5688888777664
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=6.6 Score=33.47 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH-----HHHHHHhhhcCCHHHH
Q 037404 395 KALGLFSRMKDEGFGPDKYTFV--GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY-----GCMIDLLGRSGRLKEA 467 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A 467 (605)
+......++....-....-++. .+...+...|++++|...++..... |....+ ..|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665542121112222 2345678889999999888877541 222223 2356677889999999
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 468 LRLVQSMPV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 468 ~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+..++...- .-.......-+..+...|+-++|+..|+++++..++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 999998731 123334455568899999999999999999998744
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.21 E-value=5.5 Score=32.46 Aligned_cols=126 Identities=10% Similarity=0.075 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Q 037404 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162 (605)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (605)
...++..+...+.+......++.+...+. .+...++.++..+++.+ .......+.. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666656666666666666665542 45555666666665442 2222222221 1233333445555555
Q ss_pred cCCCChHHHHHHHhccCCCCeehHHHHHHHHHhC-CChhHHHHHHhhcCCCCcchHHHHHHHHH
Q 037404 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG-GELSEARRLFDEMPERDAVSWNTILDGYA 225 (605)
Q Consensus 163 ~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 225 (605)
.+ -++.+.-++.++.. |...+..+... ++++.|.+.+.+-. +...|..++..+.
T Consensus 82 ~~--l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 82 AK--LYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred cC--cHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 55 55555555544422 33333444444 55666666655522 3334555554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.91 Score=41.45 Aligned_cols=59 Identities=24% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
..++..+...|+++.+...+++....+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.42 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=12.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+.++.+.|++++|.+.++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444444444444444444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.8 Score=34.75 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHhcCChHHHHHHHhcCCCC-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 356 YAKCGSLDNAMSVFNGMTKK-DL---VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
+...|.+++...-.+-+..+ ++ ..-..|.-+-.+.|++.+|.++|..+......|
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 34555555555555544421 21 223344455556777777777777766543334
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.9 Score=35.51 Aligned_cols=119 Identities=17% Similarity=0.124 Sum_probs=67.6
Q ss_pred HHHHHHHHH---HhcccCCHHHHHHHHHHhHHhhCCCCchHHH-HHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 037404 412 KYTFVGVLC---ACTHAGFIDKGVQYFYSMERDYGILPQVEHY-GCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTL 486 (605)
Q Consensus 412 ~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 486 (605)
..+.+.|+. .-...++.+++..++..+.. +.|..... ..-...+...|++.+|..+|+++ ...|....-..|
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344444443 44678899999999999865 45543322 23345578999999999999998 334555555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+..|.....-..=..+..++.+..+ ++.+. .++..+....+...|..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~-d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGA-DPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCC-ChHHH-HHHHHHHHhccccchhh
Confidence 6555544332223333444444333 34333 33344444444444433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.53 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.+++.+...|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555555566666666666666655553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.7 Score=40.83 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=50.6
Q ss_pred HhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHH
Q 037404 457 LLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 534 (605)
.+...|+++.+.+.+... .+.....+...+++.....|++++|....+.++...-.++++....+..-...|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344556666666666554 122334455556666666666666666666666655555555544444445556666666
Q ss_pred HHHHHHHhCCC
Q 037404 535 NVRLQMKKTRA 545 (605)
Q Consensus 535 ~~~~~~~~~~~ 545 (605)
..+++......
T Consensus 412 ~~wk~~~~~~~ 422 (831)
T PRK15180 412 HYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccCC
Confidence 66666655443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.34 E-value=7.3 Score=36.49 Aligned_cols=139 Identities=11% Similarity=0.102 Sum_probs=90.8
Q ss_pred HHHHHHhhcCC-ch----HHHHHHHHHHHhCCCCCCcchHHHHHHHhc--c----CChhHHHHHhcccCC-------CCc
Q 037404 19 EKLQNLHKCKN-LN----QTKQLFAQIIKLDLQRDPYIAPKLISSLAL--C----RQMGLAIKVFNDIQD-------PDV 80 (605)
Q Consensus 19 ~~~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~-------~~~ 80 (605)
.++..|...+. ++ ....+++.|.+.|+..+..++.+..-.... . .....|..+++.|.+ ++=
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 56777777766 54 448999999999999998888764444333 2 235678889998873 333
Q ss_pred ccHHHHHHHHHhCCCc----hHHHHHHHHHHhCCCCCCcc--cHHHHHHHhhccCC--HHHHHHHHHHHHHhCCCCCcch
Q 037404 81 HLYNTLIRACVQNSLN----AQAFRVFLDMQEKGVFTDNF--TYPFLLKACNGKNW--FHLVQMIHALIYKCGYFGDIFV 152 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 152 (605)
.++.+|+.. ..+++ +.+..+|+.+.+.|+..... ....++..+..... ...+..+++.+.+.|++.....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 455556543 33333 55678888888888775443 34444444332222 3467888888999998877777
Q ss_pred hhHHHHH
Q 037404 153 PNSLIDS 159 (605)
Q Consensus 153 ~~~l~~~ 159 (605)
|..+.-.
T Consensus 220 yp~lGlL 226 (297)
T PF13170_consen 220 YPTLGLL 226 (297)
T ss_pred ccHHHHH
Confidence 6655433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.30 E-value=2.9 Score=35.60 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=68.6
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQ-----VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHN 494 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 494 (605)
+...|++++|..-|..++. -+++. ...|..-..++.+.+.++.|++-..+. .+.|+ ...+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4567777777777777766 23332 234555566778888888888877766 44554 234444466788888
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
++++|+.-|+++++.+|....+-...+++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999998876555554444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.26 E-value=17 Score=36.12 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=103.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (605)
.-+++..+..+.++.-...+..+|+..| -+...+..++.+|... ..+.-..++.++.+..+. +...-..|+..|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 4456667777777777777888887753 5667777777777776 556667777777766543 34444555555555
Q ss_pred cCChHHHHHHHhcCCCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccCCH
Q 037404 359 CGSLDNAMSVFNGMTKK------DL---VSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTHAGFI 428 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~ 428 (605)
++.+.+..+|.++... +. ..|..+...- ..+.+..+.+..++... |..--...+.-+-.-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 7777777777655411 11 2444443311 24556666666666542 3333344455555667778888
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 037404 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (605)
++|++++..+.+ ....|......++.-+
T Consensus 222 ~eai~Ilk~il~--~d~k~~~ar~~~i~~l 249 (711)
T COG1747 222 TEAIRILKHILE--HDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHhh--hcchhhhHHHHHHHHH
Confidence 888888887776 3444555555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.015 Score=47.94 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHH
Q 037404 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 396 (605)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555666666667777776655555677777777777777766777666663222 2223445555555555555
Q ss_pred HHHHHH
Q 037404 397 LGLFSR 402 (605)
Q Consensus 397 ~~~~~~ 402 (605)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.08 E-value=19 Score=36.49 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037404 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320 (605)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 320 (605)
+..+|...+..-.+.|+.+.+.-+|++..-+ -..-|--.+.-....|+.+-|..++....+--++-...+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3467777777788888888888888876532 1122444444445557777777777666554333233332222333
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH---HHHhcCC--CCChhHHHHHHH-----HHHHc
Q 037404 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM---SVFNGMT--KKDLVSWNAMLY-----GLAMH 390 (605)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~~~~~~~~~l~~-----~~~~~ 390 (605)
+-..|+.+.|..+++.+...- +.-..+-..-+....+.|+.+.+. .++.... ..+......+.- .+.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 445678888888888776654 222233333445556666666665 3333222 112222222211 12234
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
++.+.|..++.++.+. ++++...|..++..
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 5666666666666653 23344444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.79 Score=41.74 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=81.6
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC-------CCcccHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037404 37 FAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-------PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109 (605)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 109 (605)
.+.-...|.+.+..+...++..-....+++++..++-.++. ++...+ +.++.+. .-++++++.++..=.+.
T Consensus 52 ~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 52 MDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQY 129 (418)
T ss_pred chhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchh
Confidence 34455567788888888888887778889999998877762 333333 2344333 34688999999999999
Q ss_pred CCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhC
Q 037404 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145 (605)
Q Consensus 110 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (605)
|+.||.++++.+|..+.+.++...|..+...|....
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877776543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.34 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
.....++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677778888888888877765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.8 Score=42.18 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=62.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (605)
..-|.+.|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|..-...++.- ...-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999998776 456 8888888888999999988887766666541 1111223333334444445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 037404 463 RLKEALRLVQSM-PVEPNA 480 (605)
Q Consensus 463 ~~~~A~~~~~~~-~~~p~~ 480 (605)
+..+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666555554 456663
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.51 E-value=25 Score=36.89 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=87.7
Q ss_pred HHHHHhCCChhHHHHHHhhcCC--C---CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 037404 190 IAGLVKGGELSEARRLFDEMPE--R---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264 (605)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 264 (605)
|+.+.+.+.+++|+++-+.... | -.......+..+...|+++.|-...-.|...+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4556677778888877776622 1 1123445667777777888777777777777777777766666666665444
Q ss_pred HHHHhhCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC
Q 037404 265 KLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343 (605)
Q Consensus 265 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (605)
..++-.-.. -++..|..++..+.. .+.. -|.+.++. -+++...-..++.+ .. .++.+. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa--~~----------~q~~q~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISA--TE----------PQIKQN--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhh--cc----------hHHHhh--c
Confidence 333322211 123336666666655 2222 22222221 12221111111111 00 011111 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh
Q 037404 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377 (605)
Q Consensus 344 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 377 (605)
-+......|+..|...++++.|..++-.+..+++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1223344477888888888888888877765543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.88 Score=39.77 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=36.3
Q ss_pred HHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 464 LKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
++.|...|.+. .+.|+.. .|..-+.++.+..+++.+..-..+++++.|+.....+.++..+.....+++|+..+++.
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444433333 3334432 22333344444455555555555555555555555555555555555555555555554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.36 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++..++.++.+.|++++|.+.++++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999998853
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.62 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999999874
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.24 E-value=16 Score=34.12 Aligned_cols=159 Identities=11% Similarity=0.019 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
+...++.+|...+..+ +|..+++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|+.. +......+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHHH
Confidence 4445555565555433 3444555554432 112333434455555567777777777777763 221222333333
Q ss_pred HHh---hhcCCHHHHHHHHHhC---CCCCCHH-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHhh--cCCCCch
Q 037404 456 DLL---GRSGRLKEALRLVQSM---PVEPNAI-IWGT-LL---GACRKHNA------VELAEEVLDCLIRL--KGSDPGN 516 (605)
Q Consensus 456 ~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-l~---~~~~~~g~------~~~A~~~~~~~~~~--~p~~~~~ 516 (605)
..+ .... ...|...++.+ ...|... .... ++ ....+.++ .+....+++.+.+. .|-++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 322 3222 23444444443 2222221 1111 11 11112111 44444445533332 2333332
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 517 -------YTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 517 -------~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+-.-+....+.++|++|.+.++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2233555788999999999998654
|
It is also involved in sporulation []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.85 E-value=13 Score=32.71 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 037404 494 NAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~ 512 (605)
.+.-.+...+++..+.+|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555566666666666665
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.7 Score=27.96 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 36789999999999999999999999874
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.52 E-value=4.1 Score=37.33 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH----hhCCCCchHHHHHHHH
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER----DYGILPQVEHYGCMID 456 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~ 456 (605)
..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.. +.|+.|...+...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 334444444455555555555544432 22444455555555555555555544444432 2355555544444333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.32 E-value=10 Score=31.83 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcc
Q 037404 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215 (605)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 215 (605)
++.+-+.+.++.|+...+..+++.+.+.| .+.....+++--.-+|.......+-.+.. ....+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~--~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~------------- 77 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG--QFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPA------------- 77 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHH-------------
Confidence 34444555667777777777777777777 66666555554333333322222211111 11111
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 037404 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295 (605)
Q Consensus 216 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (605)
..-|..++.++. ..+..+++.+...|++-+|.++.......+..+...++.+-.+.+|...-
T Consensus 78 --------------~Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 78 --------------YQLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred --------------HHHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 111222222221 12334455556666666666666665444444455566666666666655
Q ss_pred HHHHHHHHHc
Q 037404 296 ARLYDQMEEA 305 (605)
Q Consensus 296 ~~~~~~m~~~ 305 (605)
..+|+-..+.
T Consensus 140 ~~V~~ff~~~ 149 (167)
T PF07035_consen 140 YAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.31 E-value=25 Score=35.02 Aligned_cols=176 Identities=10% Similarity=0.076 Sum_probs=105.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 344 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
.|.....+++..+.+..++.-.+.+..+|. ..+-..|..++.+|..+ ..++-..+|+++.+.. -|...+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence 344555667777777777777777776665 34556777777788777 5566777888777753 344444443334
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCc------hHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQ------VEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLLGACR 491 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 491 (605)
+...++...+..+|.++.. .+.|. ...|..+... -..+.+.-+.+..+. +..--...+.-+..-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444777777777777766 33331 2234444332 134555555555554 22222333444445566
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
...++++|++++..+++.+..+..+-..++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 67788888888888888777666665566555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.23 E-value=4.2 Score=34.72 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc------HHHHHHHHHhCCChHHHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP------WTIIISGYAEKGMAKEAARLYDQME 303 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~m~ 303 (605)
.+..+...|.+.|+.+.|.+.|.++.+....+ +-.+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555555555555555544332222 3444445555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=19 Score=33.57 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=6.8
Q ss_pred CCeehHHHHHHHHHhCC
Q 037404 181 RDIVSWNSMIAGLVKGG 197 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g 197 (605)
+|.......+..+...|
T Consensus 35 ~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG 51 (280)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 33333333444444444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.20 E-value=2.9 Score=30.80 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.-++.+-++.+....+-|++......+++|.+.+++..|+.+++.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44466777777778888999999999999999999999999999988764333 4446666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.8 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
-.+.-++.+.|++++|.+..+.+++.+|++..+...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 346678899999999999999999999998765443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.04 E-value=3.1 Score=31.01 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
-+..+-++.+....+-|++......+++|.+.+++..|+.+++.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566677777777889999999999999999999999999999998854433 336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.1 Score=37.40 Aligned_cols=13 Identities=0% Similarity=-0.143 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHH
Q 037404 428 IDKGVQYFYSMER 440 (605)
Q Consensus 428 ~~~a~~~~~~~~~ 440 (605)
++.|.+.++....
T Consensus 7 FE~ark~aea~y~ 19 (186)
T PF06552_consen 7 FEHARKKAEAAYA 19 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.44 E-value=37 Score=35.93 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 037404 80 VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129 (605)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 129 (605)
...| ++|--+.+.|++++|.++....... .......|...+..+....
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 3345 5788889999999999999666543 5556677888888886653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.40 E-value=17 Score=32.07 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=49.5
Q ss_pred HHHHhhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhhcCCCCch-------H
Q 037404 454 MIDLLGRS-GRLKEALRLVQSM-----PVEPNAIIWGTLL---GACRKHNAVELAEEVLDCLIRLKGSDPGN-------Y 517 (605)
Q Consensus 454 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~ 517 (605)
+...|-.- .++++|+..|+.. +.+.+...-..++ .--...+++.+|+.+|++..+..-+++-. +
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 4566666666655 1122222222333 33356789999999999998865555432 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..-+.++.-.++.-.+...+++..+..
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 222333334455555666676666643
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.82 E-value=38 Score=35.34 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH---hhh----cCC
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL---LGR----SGR 463 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~ 463 (605)
.+...|..++++.-+.| .|...--...+..+.. +.++.+.-.+..+.+ .+..-....-..+... ... ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccc
Confidence 35566666666666665 3332222222223333 555555544444443 2322211111111111 111 124
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-C--ChHHHHHH
Q 037404 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT-G--DWNKVANV 536 (605)
Q Consensus 464 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~ 536 (605)
.+.+..++.+....-+......+...|..- .+++.|...+..+.... +.....++.++... | .+..|..+
T Consensus 455 ~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred hhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 555666666653334444445555444322 36788888888777755 66777788777544 2 25778888
Q ss_pred HHHHHhCC
Q 037404 537 RLQMKKTR 544 (605)
Q Consensus 537 ~~~~~~~~ 544 (605)
+++..+.+
T Consensus 532 ~~~~~~~~ 539 (552)
T KOG1550|consen 532 YDQASEED 539 (552)
T ss_pred HHHHHhcC
Confidence 88777643
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.69 E-value=9 Score=28.51 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (605)
..+...|++++|..+.+.+..+++.+|.+|... +.|-.+++..-+..|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345667788888888877777777777666543 4566666666666676665 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.59 E-value=0.67 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=11.7
Q ss_pred chHHHHHHHHHhhhcCCHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEAL 468 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~ 468 (605)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.97 Score=43.90 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=58.5
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEPNAIIWGT-LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
..+.+.++++.|..++.++ ...||-..|.+ -..++.+.+++..|+.-+.++++.+|.....|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445566677777777666 55565443332 336667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHh
Q 037404 534 ANVRLQMKK 542 (605)
Q Consensus 534 ~~~~~~~~~ 542 (605)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 777766554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.48 E-value=0.68 Score=38.05 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=43.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChh
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 200 (605)
+++.+.+.+.+.....+++.+...+...+....+.|+..|++.+ +.+...++++.... .-...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~--~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD--PYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT--TCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC--CchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 34444555555555556666665554445556666666666665 55555555553222 22334445555555555
Q ss_pred HHHHHHhhc
Q 037404 201 EARRLFDEM 209 (605)
Q Consensus 201 ~A~~~~~~~ 209 (605)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 555554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.36 E-value=15 Score=37.11 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=100.2
Q ss_pred HHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHH
Q 037404 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 434 (605)
..-.|+++.|..++-.+.++ .-+.++..+.+.|-.++|+++ .+|+. -|. ...+.|+++.|.++
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~l 659 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFDL 659 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHHH
Confidence 34557778777766665532 334556666677777766653 33332 122 23567888888887
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
..+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-..+.+....|
T Consensus 660 a~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N- 725 (794)
T KOG0276|consen 660 AVEA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN- 725 (794)
T ss_pred HHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-
Confidence 7665 345668999999999999999999998863 24456666667777766555555555543333
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
.--.+|...|+++++.+++.+-
T Consensus 726 ----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----hHHHHHHHcCCHHHHHHHHHhc
Confidence 3334678899999999988654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.35 E-value=4.6 Score=32.75 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=30.6
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQ---VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
...++.+++..++..+.- +.|+ ..++. ...+...|++++|..+|++.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFD--GWLLIARGNYDEAARILREL 70 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhH--HHHHHHcCCHHHHHHHHHhh
Confidence 346777788888877754 3443 33333 33456778888888888877
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.92 E-value=1.3 Score=27.27 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..|+.+|...|+.+.|+++++++...+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999998643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.9 Score=36.19 Aligned_cols=64 Identities=20% Similarity=0.086 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.+..+..+.+.+.+++|+...+.- +-+|. ...-..+++.++-.|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566777888888888877654 43444 44556677888888888888888888888877653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.71 E-value=6.7 Score=29.34 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=35.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 471 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+-.+..-|++.+..+.+++|.+.+++..|+++++-+...-.+....|..++
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 334456799999999999999999999999999988876655554666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.70 E-value=18 Score=30.34 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=72.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH-HHH--HHHHHhhhcC
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE-HYG--CMIDLLGRSG 462 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~g 462 (605)
+++.+..++|+.-|..+.+.|...=+. ............|+...|...|.++-.+. -.|... -.. .-...+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 356677788888888888766432111 12222334567788888888888876642 222211 111 1223455677
Q ss_pred CHHHHHHHHHhCCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 463 RLKEALRLVQSMPV--EPN-AIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 463 ~~~~A~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
.++......+.+.. .|- ...-..|.-+-.+.|++..|...|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 78887777777621 222 22345666667788888888888887776
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.68 E-value=2.6 Score=38.14 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+++.....|...|.+.+|.++.++++..+|-+...+..+...|...|+--+|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445567788999999999999999999999999999999999999999999999888865
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.63 E-value=28 Score=32.66 Aligned_cols=137 Identities=16% Similarity=0.271 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----chHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCh
Q 037404 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAE--SG----LLGLGMKVHASINKYRFK---CNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 362 (605)
+++.+.+++.|.+.|+.-+..++.+....... .. ....+..+|+.|++..+- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888877776654433333 22 234566677777665421 122222222211 22222
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCC--HHHHHHHHHHh
Q 037404 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGF--IDKGVQYFYSM 438 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~ 438 (605)
+.- .+.+..+|+.+.+.|+..+. .....++..+..... ..++.++++.+
T Consensus 156 e~l---------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EEL---------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HHH---------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 111 24556666777776665533 233334433333222 33666777777
Q ss_pred HHhhCCCCchHHHHHHHHHh
Q 037404 439 ERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~ 458 (605)
.+ .++++....|..++-.-
T Consensus 209 ~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HH-cCCccccccccHHHHHH
Confidence 76 47777666666554443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=86.45 E-value=5.9 Score=35.05 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHH-------HHHHHHHHHHhhc--CCC----CchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 481 IIWGTLLGACRKHNAVE-------LAEEVLDCLIRLK--GSD----PGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+..+.+.|...|+.+ .|.+.|+++.+.. |.. ..+.+.+|.+..+.|++++|.+.+.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555667777777744 4445555555432 222 3567789999999999999999999999854
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=86.13 E-value=1.8 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.042 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
..+...+...|+++.|...++++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444445555555555555544443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=51 Score=35.03 Aligned_cols=378 Identities=11% Similarity=-0.008 Sum_probs=179.0
Q ss_pred cchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 037404 50 YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129 (605)
Q Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 129 (605)
..-...+..+++.+++....+ |..-++.+...-.....+....|+.++|......+-..|.. .+.....++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcC
Confidence 333444556666777777777 33223344444455667777778777777766666555433 3455666666665444
Q ss_pred CHHHHH--HHHHHHHHhCC-----------CCCcc-hhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHH--H
Q 037404 130 WFHLVQ--MIHALIYKCGY-----------FGDIF-VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG--L 193 (605)
Q Consensus 130 ~~~~a~--~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~--~ 193 (605)
.+.... +=+..+...|- .++.. ....++..+ . +...+..++.... ++...-..++.+ -
T Consensus 178 ~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~--~p~~~~~~~~~~~-~~~~~~~~~~~~l~R 251 (644)
T PRK11619 178 KQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---N--DPNTVETFARTTG-PTDFTRQMAAVAFAS 251 (644)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---H--CHHHHHHHhhccC-CChhhHHHHHHHHHH
Confidence 322211 11111111110 11111 111111111 1 2333333333321 111111111111 1
Q ss_pred HhCCChhHHHHHHhhcCCCC-------cchHHHHHHHHHcCCChHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 037404 194 VKGGELSEARRLFDEMPERD-------AVSWNTILDGYAKAGEMNLAFELFEKIPHR--NIVSWSTMVWGYSKDGDMEMA 264 (605)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 264 (605)
....+.+.|..++....... ......+.......+..+.+...++..... +......-+......++++.+
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHH
Confidence 23455688888887762222 122333433333333356777777765432 455555556666788999999
Q ss_pred HHHHhhCCCCCcc--c-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH-HHHHHHHHHc
Q 037404 265 KLLFDRMPAKTLV--P-WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG-MKVHASINKY 340 (605)
Q Consensus 265 ~~~~~~~~~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 340 (605)
...+..|...... - .--+.+++...|+.++|...|+.+.. ..+ -|..+... +.|..-.. ...... ...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~~~~-~~~ 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDKAPK-PDS 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCCCCc-hhh
Confidence 8888888642211 1 34566777778999999999988743 122 12222111 11211000 000000 000
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCHHH
Q 037404 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-----GFGPDKYT 414 (605)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~~p~~~~ 414 (605)
.+...+ ...-+..+...|+...|...+..+. ..+......+.......|.++.++......... .+ |. .
T Consensus 404 ~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~ 478 (644)
T PRK11619 404 ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--A 478 (644)
T ss_pred hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--c
Confidence 000001 1223445566777777777776544 234444455555555667777776655432211 11 11 2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
|...+..+.....++.+. ++.-+.++.++.|+..
T Consensus 479 ~~~~~~~~a~~~~v~~~l-v~ai~rqES~f~p~a~ 512 (644)
T PRK11619 479 WNDEFRRYTSGKGIPQSY-AMAIARQESAWNPKAR 512 (644)
T ss_pred hHHHHHHHHHHcCCCHHH-HHHHHHHhcCCCCCCc
Confidence 444555555444444443 2233333346666544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.99 E-value=6.4 Score=29.09 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=35.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 473 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
.+..-|++.+..+.+++|.+.+++..|+++++-....-..+...|..+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3456788888888888998889999999888877755443444454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.87 E-value=51 Score=34.93 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHHHhhc---CC------CCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLK---GS------DPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+-.|++..|....+.+.+.. |. .+..++..|-.+...|+.+.|...|.+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 35689999999999888753 22 245566677777788999999999983
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.67 E-value=9.1 Score=33.91 Aligned_cols=61 Identities=10% Similarity=-0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+..+.+++...|++-++++...++++..|.+..+|+.-+.+....=+.++|..-+..+.+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3444566677899999999999999999999999999999999888999999999988874
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.53 E-value=24 Score=30.80 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh-HHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV-SWNAMLY--GLAMHGQGEKALGLFSRMKDEGFGPDKY--TFVGVL 419 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll 419 (605)
-+.+||.|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+-+.+.-+.. +.|+. .|..+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3567888888888888899888888877765542 2222222 2334578888888777776653 22222 222222
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh-cCCHHHHHHHHHhCCCC------CCHHHHHHHHHHHHh
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR-SGRLKEALRLVQSMPVE------PNAIIWGTLLGACRK 492 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~------p~~~~~~~l~~~~~~ 492 (605)
...-++.+|..-+.+--+ + .+..-|...+..|.- .=..+.+.+-...-... .-..||--+.+-+..
T Consensus 177 ---E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 233355566544433222 2 333344433332221 11122222222221100 113456667778888
Q ss_pred cCCHHHHHHHHHHHHhhc
Q 037404 493 HNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~ 510 (605)
.|+.++|..+|+-++..+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 999999999999888754
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.31 E-value=3.3 Score=30.62 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.-+++.++.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455556667777777777777777777777777777777764
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.25 E-value=28 Score=31.38 Aligned_cols=242 Identities=17% Similarity=0.206 Sum_probs=133.9
Q ss_pred cCCHHHHHHHHhhCCCC-------CcccHHHHHHHHHhCCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHccC
Q 037404 258 DGDMEMAKLLFDRMPAK-------TLVPWTIIISGYAEKGMAKEAARLYDQMEEA---GL--KPDDGTLISILAACAESG 325 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~ 325 (605)
..++++|+.-|+++.+- +......++....+.+++++.++.|++++.. .+ .-+....+.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34566666666665432 1222445677777888888888888777531 11 123455666766666666
Q ss_pred chHHHHHHHHHHHH----c-CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------C-------hhHHHHHHH
Q 037404 326 LLGLGMKVHASINK----Y-RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK--------D-------LVSWNAMLY 385 (605)
Q Consensus 326 ~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~l~~ 385 (605)
+.+....+|+.-.+ . +-..--.+-..|...|...|++....++++++... | ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66665555544321 1 11111123345777788888888888887766411 1 246666777
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh-----cccCCHHHHHHHHHHhHHhhCCC--Cc---hHHHHHH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCAC-----THAGFIDKGVQYFYSMERDYGIL--PQ---VEHYGCM 454 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~--~~---~~~~~~l 454 (605)
.|....+-.+-..++++..... --|.+... .+++-| .+.|.+++|..-|-++.+.+.-. |. ---|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8877777777777777755421 23444443 344444 45678888776555554422211 22 2234556
Q ss_pred HHHhhhcCCHHHHHHHHH--hC-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQ--SM-PV--EPNAIIWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~--~~-~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
..++.+.|- .-|+ ++ +. .|.......++.+|. .++..+-++++..-
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSN 329 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhh
Confidence 666666551 0111 11 22 344556677777775 45666655555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.74 E-value=30 Score=31.20 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=94.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
-+..-.+.|++++|.+.|+.+...-. +-...+...++-++.+.++++.|....++..+........-|...+.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs-- 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS-- 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH--
Confidence 34455677888888888888875421 11234444555666677777777777777665443323333444444443
Q ss_pred CChHHHHHHHhcCCCCChhHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG---EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
.|..+..+ .++. ..|..-|++++.. -||.. -...|..-+.
T Consensus 118 --------~~~~i~~~--------------~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~ 160 (254)
T COG4105 118 --------YFFQIDDV--------------TRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIV 160 (254)
T ss_pred --------HhccCCcc--------------ccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHH
Confidence 11111111 1122 2333444444442 23221 1111111111
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
.+... =...=..+...|.+.|.+..|..-++++ +..+ ....+-.+..+|...|-.++|...-+-+....|
T Consensus 161 ~~~d~-----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 161 KLNDA-----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHH-----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 11110 0001123556677777777777777766 1111 123455566778888888888777666555556
Q ss_pred CCC
Q 037404 512 SDP 514 (605)
Q Consensus 512 ~~~ 514 (605)
+++
T Consensus 236 ~s~ 238 (254)
T COG4105 236 DSQ 238 (254)
T ss_pred CCc
Confidence 655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.67 E-value=14 Score=37.32 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=92.0
Q ss_pred HHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037404 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272 (605)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 272 (605)
..-.|+++.|..++..+.++. -+.++..+.+.|-.++|+++- ..++.. .....+.|+++.|.++..+.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s---~D~d~r-----Felal~lgrl~iA~~la~e~- 663 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELS---TDPDQR-----FELALKLGRLDIAFDLAVEA- 663 (794)
T ss_pred HhhhccccccccccccCchhh---hhhHHhHhhhccchHhhhhcC---CChhhh-----hhhhhhcCcHHHHHHHHHhh-
Confidence 344577777777666665332 245556666677777776552 112211 22345678888887776653
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 037404 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352 (605)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 352 (605)
.+..-|..|..+....+++..|.+.|..... +..++..+...|+-+....+-....+.|. .|..
T Consensus 664 -~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~A 727 (794)
T KOG0276|consen 664 -NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLA 727 (794)
T ss_pred -cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchH
Confidence 3445588888888888888888888876654 34566666667776655555555555442 1223
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 037404 353 VDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~ 371 (605)
..+|...|+++++.+++.+
T Consensus 728 F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3345566777777666654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.55 E-value=3 Score=34.98 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
+++|...|+++...+|.+......| .+. +.|-+++.++.+++.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 7788888888899999976433333 332 347788888877654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.46 E-value=0.68 Score=42.79 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=49.1
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHH
Q 037404 460 RSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
..|.+++|++.|... ...|. ...+..-..++.+.++...|++-+..+.+++|+...-|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 445566666665554 22222 3334444455556666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCC
Q 037404 538 LQMKKTRAQ 546 (605)
Q Consensus 538 ~~~~~~~~~ 546 (605)
....+.+..
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 666555443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.04 E-value=37 Score=30.99 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=94.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHhcccCCHHHHHHHHHHh---HHhhCCCCchHHHH
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-------TFVGVLCACTHAGFIDKGVQYFYSM---ERDYGILPQVEHYG 452 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~ 452 (605)
+.+-..+.+++++|+..+.++...|+..+.. +...+...|...|+...-.+..... ..++.-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445567788899999999998888766654 4455677788888776554444332 22223333445556
Q ss_pred HHHHHhhhc-CCHHHHHHHHHhC---CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHh----hc--CCCCchH
Q 037404 453 CMIDLLGRS-GRLKEALRLVQSM---PVEPNAI-----IWGTLLGACRKHNAVELAEEVLDCLIR----LK--GSDPGNY 517 (605)
Q Consensus 453 ~l~~~~~~~-g~~~~A~~~~~~~---~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~ 517 (605)
+|++.+-.. ..++.-+++.... ..+-... .-.-++..+.+.|.+.+|+.....+.. .+ |.-...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 666665433 3344444444333 1111111 112356667788888888776544433 22 4444556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..=..+|....+...+..-+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 66667777777777777777766664
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.01 E-value=2.4 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999998864
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=81.70 E-value=3.6 Score=22.89 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999889888888777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.96 E-value=43 Score=30.30 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=107.7
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCchHHHHHHHHHHHH---cCC--CCChhHHHHHHHHHHhc
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDG---TLISILAACAESGLLGLGMKVHASINK---YRF--KCNTNVCNALVDMYAKC 359 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 359 (605)
+..++++|+.-|.+.++....-... .+..++....+.+++++....|.++.. +.+ ..+....|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4458899999999988753232333 345667888899999888888877642 222 12345567777766666
Q ss_pred CChHHHHHHHhcCC-----CCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----C-------HHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT-----KKDLV----SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP----D-------KYTFVGVL 419 (605)
Q Consensus 360 g~~~~A~~~~~~~~-----~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p----~-------~~~~~~ll 419 (605)
.+.+--.++++.-. .+|.. +-..+...|...+.+.+-.++++++...--.- | ...|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 66666555554322 11222 33456667777777777777777776542111 1 12355556
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH----HHhhhcCCHHHHHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI----DLLGRSGRLKEALR 469 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~ 469 (605)
+.|....+-..-..+++....-..-.|.+.....+- .+..+.|.+++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 666666666666666766654334445554443332 23445666666654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.78 E-value=1e+02 Score=34.57 Aligned_cols=256 Identities=11% Similarity=-0.010 Sum_probs=145.8
Q ss_pred HHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCCh-HHHHHHHHhCCCCChhHH
Q 037404 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM-NLAFELFEKIPHRNIVSW 248 (605)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 248 (605)
....+.+.+..+|.......+..+.+.+..+....+...+..+|...-...+.++...+.. .....+...+..+|..+-
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 3345555666778888888888888877654333344444555554444444555443221 112223333445676666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH
Q 037404 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328 (605)
Q Consensus 249 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 328 (605)
...+.++...+.-+ ...+...+..++...-...+.++...+..+. +..... .++...-.....++...+..+
T Consensus 702 ~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 66666666543211 2334455556665554555556655544332 222222 456666566666666666543
Q ss_pred H-HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037404 329 L-GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM-SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406 (605)
Q Consensus 329 ~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 406 (605)
. +...+..+.+ .++..+-...+.++...|..+.+. .+...+..++...-...+.++...+. .++...+..+.+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~- 848 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT- 848 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-
Confidence 2 2333444433 346777888888888888766553 34445556676666667777777765 456666666664
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 407 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
.|+...-...+.++.+......+...+..+..
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666666777665444567777776665
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.43 E-value=17 Score=31.34 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred hcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCCCchHHHHHHHHHhcCChHH
Q 037404 460 RSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK----GSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.|+ +.|.+.|-.+ +.-.++.....|+..| ...+.++++.++-+++++. ..||.++..|+.++.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 5677777666 2223444444444444 5678999999999999974 3368899999999999999998
Q ss_pred HH
Q 037404 533 VA 534 (605)
Q Consensus 533 A~ 534 (605)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.31 E-value=54 Score=34.20 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHhCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT-GDWNKVANVRLQMKKTR 544 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 544 (605)
+...|..+++++.+.. ++.+...++..+.-. |+++.+.-.+..+.+.+
T Consensus 379 ~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 5556666666666554 222333333332222 55555555555555544
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.29 E-value=61 Score=31.66 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=100.0
Q ss_pred cCChHHHHHHHhcCCCC----ChhHHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCCHH
Q 037404 359 CGSLDNAMSVFNGMTKK----DLVSWNAMLYG-LAMHGQGEKALGLFSRMKDEGFGPDK----YTFVGVLCACTHAGFID 429 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 429 (605)
.|+.+++.+.+..+... ....|-.|+.+ .....+..+|+++|+..+-. -|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58889999999887733 44566666665 44567889999999987753 4433 23444455677889999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHH-HHHHhhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGC-MIDLLGRS---GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 505 (605)
++..+-......+...|-..-|.. +...+.+. -..+.-..++..|.-.--...|..+.+.-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988877777664555554333332 22333333 34455556666664222355888888888899999999999999
Q ss_pred HHhhc
Q 037404 506 LIRLK 510 (605)
Q Consensus 506 ~~~~~ 510 (605)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 99875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.2 bits (157), Expect = 4e-11
Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 7/197 (3%)
Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
+ A L D +A P + L +L L + ++ + A
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 352 LVDMYAKCGSLDNAMSVFNGMTKK-------DLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
L A + + L +NA++ G A G ++ + + +K
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
D G PD ++ L ++ G+ Q ++ R+ L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 465 KEALRLVQSMPVEPNAI 481
K ++ + + P
Sbjct: 253 KAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 4e-10
Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 13/206 (6%)
Query: 263 MAKLLFDRMPAKTLVPWTI----IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
MA L D PW ++ K Q +A L L++
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 319 AACAESGLLGLGMKV---HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
C + L L + H + R ++ NA++ +A+ G+ + V +
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 376 ----DLVSWNAMLYGLAMHGQGEKALG-LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
DL+S+ A L + Q + +M EG +L A + K
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-VLK 253
Query: 431 GVQYFYSMERDYGILPQVEHYGCMID 456
V LP + ++
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 3e-06
Identities = 21/164 (12%), Positives = 43/164 (26%), Gaps = 32/164 (19%)
Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--------DAVSWNTIL 221
+A L + W +A L++ + + +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
++ LA L + L L +
Sbjct: 135 KCCLLTDQLPLAHHLLVVH------------------HGQRQKRKLLT------LDMYNA 170
Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
++ G+A +G KE + +++AGL PD + + L
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 5e-05
Identities = 13/116 (11%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 55 LISSLALCRQMGLAIKVFNDIQD-------PDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
L Q+ LA + + +YN ++ + + V ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 108 EKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
+ G+ D +Y L+ ++ + + G L+ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 4e-09
Identities = 82/536 (15%), Positives = 149/536 (27%), Gaps = 180/536 (33%)
Query: 9 TWFSKRRLLEEKLQ----------NLHKCKN----LNQTKQLFAQIIKLDLQR-DPYIAP 53
TW + L K+Q NL C + L ++L QI R D
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 54 KL--------ISSLALCRQMGLAIKVFNDIQDPDV-HLYN----TLI--R-ACVQNSLNA 97
KL + L + + V ++Q+ + +N L+ R V + L+A
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 98 Q-AFRVFLDMQEKGVFTDNFTYPFLLK------------ACNGKNWFHLVQMIHALIYKC 144
+ LD T + LLK N L +I I
Sbjct: 284 ATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRL-SIIAESIRD- 339
Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
+ D++ KL ++I + E +E R+
Sbjct: 340 --------GLATWDNWKH------VNCDKL------------TTIIESSLNVLEPAEYRK 373
Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD-MEM 263
+FD + +V F IP + ++W D M +
Sbjct: 374 MFDRL----SV------------------FPPSAHIPTILLS----LIWFDVIKSDVMVV 407
Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD-QMEEAGLKPDDGTLISILAACA 322
L +LV EK + + +E ++ L
Sbjct: 408 VNKLHK----YSLV----------EKQPKESTISIPSIYLELKVKLENEYAL-------- 445
Query: 323 ESGLLGLGMKVHAS-INKYRFK---CNTNVCNALVDMYAKCGSLDNAMSVFN--GMTKKD 376
H S ++ Y + ++ +D Y ++ G
Sbjct: 446 -----------HRSIVDHYNIPKTFDSDDLIPPYLDQY-----------FYSHIG----- 478
Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQY- 434
+ L E+ + LF + D F K + ++ Q
Sbjct: 479 --------HHLKNIEHPER-MTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQQLK 528
Query: 435 FYSMERDYGILPQVEHYGCMI-DLLGRSGRLKEAL------RLVQSMPVEPNAIIW 483
FY + Y I Y ++ +L +++E L L++ + + I+
Sbjct: 529 FY---KPY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 49/325 (15%), Positives = 93/325 (28%), Gaps = 89/325 (27%)
Query: 13 KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPY----IAPKLISSL-ALCRQMGL 67
L+ L ++ K L + + Q P P+ +S + R
Sbjct: 287 THISLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 68 AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR-VFLDMQEKGVFTDNFTYP------- 119
+ + + T+I + + N L +R +F + VF + P
Sbjct: 343 TWDNWKHVNCDKL---TTIIESSL-NVLEPAEYRKMFDRL---SVFPPSAHIPTILLSLI 395
Query: 120 ------------------FLLKACNGKNW---FHLVQM-----------IHALI---YK- 143
+ L K + + +H I Y
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 144 -CGYFGDIFVPNSLIDSY---------SKCGVVG-VSLAKKLFMSMG------ERDIVSW 186
+ D +P L D Y ++L + +F+ D +W
Sbjct: 456 PKTFDSDDLIPPYL-DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 187 NSMIAGLVKGGELSEARR-LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
N+ + L +L + + D P+ + + N ILD K E NL + ++
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEE-NLI-----CSKYTDL 567
Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDR 270
+ + M + E A R
Sbjct: 568 LRIALM---AEDEAIFEEAHKQVQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.91 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.42 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.42 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.39 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.37 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.36 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.32 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.28 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.27 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.09 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.09 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.03 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.86 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.83 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.82 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.77 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.71 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.58 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.52 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.22 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.0 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.95 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.79 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.78 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.51 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.43 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.22 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.43 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.01 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.79 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.4 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.31 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 91.85 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 91.64 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 91.35 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.96 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.84 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.74 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.68 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.67 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.31 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 88.98 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.65 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.5 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.35 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.81 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.2 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.11 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.75 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 85.64 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.26 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.23 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.77 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.47 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 83.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.31 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.06 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.45 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=358.92 Aligned_cols=476 Identities=9% Similarity=-0.029 Sum_probs=392.8
Q ss_pred HHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHH
Q 037404 58 SLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137 (605)
Q Consensus 58 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 137 (605)
.+.+.|....+...|..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 355678888888999988888999999999999999999999999999985 467888999999999999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC-------------------CeehHHHHHHHHHhCCC
Q 037404 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-------------------DIVSWNSMIAGLVKGGE 198 (605)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~ 198 (605)
++.+... +++..+++.++.+|.+.| ++++|.++|++.... +..+|+.++.+|.+.|+
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLY--DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTT--CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHh--hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 9987643 678889999999999999 999999999965433 36789999999999999
Q ss_pred hhHHHHHHhhcC--CCC-cchHHHHHHHHHcCCChHHHHHH---HHhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 037404 199 LSEARRLFDEMP--ERD-AVSWNTILDGYAKAGEMNLAFEL---FEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLF 268 (605)
Q Consensus 199 ~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 268 (605)
+++|++.|++|. .|+ ...+..+...+...+..+.+... +..+... ...+|+.++..|.+.|++++|.++|
T Consensus 216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999993 343 33444444444333322221110 2222222 2345667788899999999999999
Q ss_pred hhCCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 269 DRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 269 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
+++.+ ++..+|+.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 667779999999999999999999999999875 4467789999999999999999999999998654 4578
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
.+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999875 4578899999999999999999999999999864 457789999999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcC
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN--AIIWGTLLGACRKHN 494 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g 494 (605)
+.|++++|.++|+++.+ ..+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999987 34557889999999999999999999999988 34677 789999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++++|.+.++++.+..|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999854
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=338.73 Aligned_cols=472 Identities=7% Similarity=-0.064 Sum_probs=401.6
Q ss_pred CCCcchHHHHHHHhccCChhHHHHHhcccC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037404 47 RDPYIAPKLISSLALCRQMGLAIKVFNDIQ--DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124 (605)
Q Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 124 (605)
+++..++.++..|.+.|++++|..+|+++. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 567889999999999999999999999986 578889999999999999999999999998653 6788899999999
Q ss_pred hhccCCHHHHHHHHHHHHHh---------------CCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC---CeehH
Q 037404 125 CNGKNWFHLVQMIHALIYKC---------------GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---DIVSW 186 (605)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~---~~~~~ 186 (605)
+.+.|++++|..+|+.+... +.+.+..+|+.++.+|.+.| ++++|.++|+++.+. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS--NFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999852211 12234678999999999999 999999999998653 33455
Q ss_pred HHHHHHHHhCCChhHHHHH---HhhcCC----CCcchHHHHHHHHHcCCChHHHHHHHHhCCC--CChhHHHHHHHHHHh
Q 037404 187 NSMIAGLVKGGELSEARRL---FDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPH--RNIVSWSTMVWGYSK 257 (605)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 257 (605)
..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++.+ ++..++..++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 5555544433332222111 222221 1234566668888899999999999999987 788999999999999
Q ss_pred cCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 037404 258 DGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (605)
.|++++|.++|+++.+ .+...|+.++.++...|++++|..+++++.+.. +.+..++..+...|.+.|++++|.++|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999853 356669999999999999999999999998753 557888999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037404 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411 (605)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 411 (605)
+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9998764 3467899999999999999999999999775 4578899999999999999999999999999864 447
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWG 484 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~ 484 (605)
..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ .. +.+..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 8899999999999999999999999998732 55777 789999999999999999999999998 33 34788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
.++.+|.+.|++++|.+.++++++.+|+++..+..++.+|.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-27 Score=231.38 Aligned_cols=336 Identities=13% Similarity=0.093 Sum_probs=238.2
Q ss_pred HHHHHHhCCChhHHHHHHhhc---CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhcCCHH
Q 037404 189 MIAGLVKGGELSEARRLFDEM---PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--R-NIVSWSTMVWGYSKDGDME 262 (605)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 262 (605)
+...+...|++++|...++.. .+.+..+|..+...+.+.|++++|...|+++.+ | +..+|..+..++.+.|+++
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHH
Confidence 333344444444444444433 112333444555555555555555555544431 2 2344556666666666666
Q ss_pred HHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 037404 263 MAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339 (605)
Q Consensus 263 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (605)
+|.+.|+++.+. ....+..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+
T Consensus 119 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666555422 22235666677777777777777777777653 33456677777777788888888888887776
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
.+. .+...+..+...+...|++++|...|++.. +.+..++..+...|...|++++|+..|+++.+.+ +.+..++.
T Consensus 198 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 275 (388)
T 1w3b_A 198 LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYC 275 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHH
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 552 356677788888888888888888887654 4466788888888999999999999999988853 33567788
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHN 494 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 494 (605)
.+..++.+.|++++|...++++.+ ..+.+..++..++..+.+.|++++|.+.++++ ...| +..++..++.++.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888889999999999999999887 35667888888999999999999999999887 4444 4678888899999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
++++|...++++++.+|+++.++..++.++...|+
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999988877764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=227.02 Aligned_cols=349 Identities=11% Similarity=0.053 Sum_probs=303.6
Q ss_pred HHHHHHhCCChhHHHHHHhhc--CCCC-cchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHH
Q 037404 189 MIAGLVKGGELSEARRLFDEM--PERD-AVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDME 262 (605)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 262 (605)
+...+.+.|++++|+..+..+ ..|+ ...+..+...+...|++++|...++...+ .+..+|..+..+|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345677889999999999888 3454 45666777888999999999999987653 46688999999999999999
Q ss_pred HHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 037404 263 MAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASIN 338 (605)
Q Consensus 263 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (605)
+|...|+++.+. +...|..+..++...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999987532 3345899999999999999999999999986 354 4556777888899999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 037404 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415 (605)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 415 (605)
+.. +.+..++..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..+++..+.. +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 865 3367889999999999999999999999876 4466789999999999999999999999998853 2357788
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKH 493 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 493 (605)
..+..++...|++++|...++++.+ ..+.+..++..++..+.+.|++++|.+.++++ ..+++..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999987 34456788999999999999999999999998 3345788999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999974
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=232.36 Aligned_cols=182 Identities=15% Similarity=0.202 Sum_probs=171.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc---------hHHHHHHHHHHHHcCCCCChhHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL---------LGLGMKVHASINKYRFKCNTNVC 349 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 349 (605)
++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 788899999999999999999999999999999999999999987654 67899999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 350 NALVDMYAKCGSLDNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 350 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999987 5799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
|+.++|.+++++|.+ .+..|+..||+.++..|+..
T Consensus 189 g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999998 69999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=225.20 Aligned_cols=200 Identities=12% Similarity=0.162 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC---------h
Q 037404 293 KEAARLYDQMEEAGLKPDD-GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS---------L 362 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 362 (605)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 46788999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHh
Q 037404 363 DNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438 (605)
Q Consensus 363 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (605)
+.|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 037404 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKH 493 (605)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 493 (605)
.+ .|+.||..+|++|+.+|++.|++++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98 699999999999999999999999999999999 7899999999999888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=214.52 Aligned_cols=387 Identities=10% Similarity=-0.038 Sum_probs=308.8
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHH
Q 037404 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYA 225 (605)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~ 225 (605)
..+..+...+.+.| +++.|...|+++.. |+...|..+..++.+.|++++|+..|+++ ..| +..++..+..++.
T Consensus 7 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNK--KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTS--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 45667788899999 99999999998864 78888999999999999999999999988 334 4568888999999
Q ss_pred cCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHH----------------------------------
Q 037404 226 KAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAKLLF---------------------------------- 268 (605)
Q Consensus 226 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~---------------------------------- 268 (605)
..|++++|...|+.+.+ .+......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999987753 23333333333333322222222111
Q ss_pred ----hhCCCC----------CcccHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHH
Q 037404 269 ----DRMPAK----------TLVPWTIIISGYAE---KGMAKEAARLYDQMEE-----AGLKP--------DDGTLISIL 318 (605)
Q Consensus 269 ----~~~~~~----------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll 318 (605)
...... +...+......+.. .|++++|+..|+++.+ ....| +...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111100 01124444444554 8999999999999988 31122 245677788
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
..+...|+++.|...++.+.+.... ...+..+..++...|++++|...++++. +.+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999887654 8889999999999999999999999765 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..++..+.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999864 335678888999999999999999999999873 4446778999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 475 ---PVEPN----AIIWGTLLGACRK---HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 475 ---~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+..++ ...+..++..+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 4488889999999 9999999999999999999999999999999999999999999999999853
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=209.84 Aligned_cols=430 Identities=9% Similarity=-0.024 Sum_probs=245.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 037404 80 VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159 (605)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (605)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456667777888888888888888887753 2356677777777778888888888888887765 2345667777777
Q ss_pred HHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCC------CcchHHHHHHHHHcCCChHHH
Q 037404 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------DAVSWNTILDGYAKAGEMNLA 233 (605)
Q Consensus 160 ~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a 233 (605)
|...| +++.|...|+.+. .+.......+..+...+....|+..++.+... ........+..+....+.+.+
T Consensus 103 ~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLG--NFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHT--CHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcC--CHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 77777 7777777775332 22222222344444555556666666666321 111122233334444444444
Q ss_pred HHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037404 234 FELFEKIPHRNIV---SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310 (605)
Q Consensus 234 ~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 310 (605)
...+......+.. ....+...+...+ .......|++++|..+|+++.+.. |+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~--p~ 234 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSAN--TV 234 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHC--CC
Confidence 4444443332221 2222222221110 000001134455555555554432 22
Q ss_pred --------HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhH
Q 037404 311 --------DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVS 379 (605)
Q Consensus 311 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 379 (605)
..++..+...+...|+++.|...++.+.+... +...+..+...+...|++++|...|+++. +.+..+
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 312 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Confidence 11233344445555555555555555555432 24455555555666666666666665443 334556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
|..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++..+.
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 6666666667777777777777666642 223455666666777777777777777777662 3344556667777777
Q ss_pred hcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 460 RSGRLKEALRLVQSM----P----VEPNAIIWGTLLGACRKH----------NAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
..|++++|.+.++++ + .......+......+... |++++|...++++++..|.++.++..++
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 777777777777665 1 111122234445566666 7888888888888888888777888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 037404 522 NIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+|.+.|++++|.+.++++.+..
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888888888877743
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-23 Score=209.46 Aligned_cols=432 Identities=11% Similarity=-0.043 Sum_probs=323.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHH
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (605)
..|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|+++.|...++.+++.. +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456667788999999999999999999874 688889999999999999999999999999875 33557888899999
Q ss_pred HhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC----CCCcchHHHH---HHHHHcCCCh
Q 037404 161 SKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTI---LDGYAKAGEM 230 (605)
Q Consensus 161 ~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l---l~~~~~~~~~ 230 (605)
...| ++++|...|+++.. .+......++..+........+.+.+..+. .|+...+..- ..........
T Consensus 84 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLG--KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTT--CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHh--hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999 99999999987643 233344444544444433333333332220 1111111000 0001111111
Q ss_pred HHHHHHHHhCCC----------CChhHHHHHHHHHHh---cCCHHHHHHHHhhCCC-----C------------CcccHH
Q 037404 231 NLAFELFEKIPH----------RNIVSWSTMVWGYSK---DGDMEMAKLLFDRMPA-----K------------TLVPWT 280 (605)
Q Consensus 231 ~~a~~~~~~~~~----------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~------------~~~~~~ 280 (605)
..+...+..... .+...+......+.. .|++++|...|+++.+ . ....|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 122222222211 124455555555554 8999999999987654 1 122377
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
.+...+...|++++|...|+++.+.. |+...+..+..++...|+++.|...++.+.+.. +.+..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999999865 447788889999999999999999999998765 346778899999999999
Q ss_pred ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 361 SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 361 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
++++|...|+++. +.+...+..+...|...|++++|+..++++.+.. +.+...+..+..++...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999765 4467889999999999999999999999998853 33567888899999999999999999999
Q ss_pred hHHhhCCCCc----hHHHHHHHHHhhh---cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 438 MERDYGILPQ----VEHYGCMIDLLGR---SGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 438 ~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
+.......++ ...+..++..+.. .|++++|.+.++++ .. +.+..++..++..+...|++++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9774322232 3488999999999 99999999999987 32 34577888999999999999999999999999
Q ss_pred hcCCCCchHHHHH
Q 037404 509 LKGSDPGNYTMLS 521 (605)
Q Consensus 509 ~~p~~~~~~~~l~ 521 (605)
..|.++..+..+.
T Consensus 478 ~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 478 LARTMEEKLQAIT 490 (514)
T ss_dssp HCSSHHHHHHHHH
T ss_pred hccccHHHHHHHH
Confidence 9999888776663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-22 Score=199.05 Aligned_cols=325 Identities=12% Similarity=0.089 Sum_probs=228.5
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHhhcC---CCCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHH
Q 037404 183 IVSWNSMIAGLVKGGELSEARRLFDEMP---ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYS 256 (605)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 256 (605)
...+..+...+.+.|++++|+..|+++. +.+..++..+..++...|++++|...|+++.+ .+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------- 96 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA--------- 96 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH---------
Confidence 3455666666666666666666666552 22344455555555555555555555544432 12333
Q ss_pred hcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHH------------HHHH
Q 037404 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLIS------------ILAA 320 (605)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~------------ll~~ 320 (605)
|..++..|...|++++|...|+++.+. .|+. ..+.. +...
T Consensus 97 ----------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 97 ----------------------RLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp ----------------------HHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555543 2222 22222 2344
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHH
Q 037404 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 397 (605)
+...|+++.|...++.+.+.. +.+..++..++.+|...|++++|...|+++. +.+..+|..++..|...|++++|+
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 677788888888888877654 3467778888888888999999988888775 457788899999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHH------------HHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHhhhcC
Q 037404 398 GLFSRMKDEGFGPD-KYTFVGV------------LCACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCMIDLLGRSG 462 (605)
Q Consensus 398 ~~~~~m~~~g~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 462 (605)
..|+++.+. .|+ ...+..+ ...|...|++++|...++++.......|. ...+..++..+.+.|
T Consensus 232 ~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 232 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCC
Confidence 999998874 443 3344333 78899999999999999999873211111 457888999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH------------HHHhcC
Q 037404 463 RLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN------------IFAATG 528 (605)
Q Consensus 463 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g 528 (605)
++++|.+.++++ ...| +...|..++.+|...|++++|...++++++..|+++.++..++. .|...|
T Consensus 310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 999999999987 3334 68899999999999999999999999999999999999999984 455556
Q ss_pred -----ChHHHHHHHHH-HHhC
Q 037404 529 -----DWNKVANVRLQ-MKKT 543 (605)
Q Consensus 529 -----~~~~A~~~~~~-~~~~ 543 (605)
+.+++.+.+++ ..+.
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHHS
T ss_pred CCccCCHHHHHHHHHHHHHHh
Confidence 56777888876 4443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=195.23 Aligned_cols=297 Identities=10% Similarity=0.021 Sum_probs=252.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037404 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320 (605)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 320 (605)
+...+..++..|.+.|++++|..+|+++.+ .+...|..++.++...|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 346788888889999999999999988753 344558889999999999999999999999874 4457788899999
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCCh---hHHHHH------------HHHHHhcCChHHHHHHHhcCC---CCChhHHHH
Q 037404 321 CAESGLLGLGMKVHASINKYRFKCNT---NVCNAL------------VDMYAKCGSLDNAMSVFNGMT---KKDLVSWNA 382 (605)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 382 (605)
+...|++++|...++.+.+.... +. ..+..+ ...+...|++++|...|+++. +.+...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999876532 33 455544 445899999999999999876 457789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH--------
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM-------- 454 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 454 (605)
++..|...|++++|+..|+++.+.. +.+..++..+..+|...|++++|...++++... .+.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998863 456788999999999999999999999999872 33344455444
Q ss_pred ----HHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 455 ----IDLLGRSGRLKEALRLVQSM-PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 455 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+..+.+.|++++|.+.|+++ ...|+ ...+..++.++.+.|++++|+..++++++..|+++.++..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999998 33444 447788899999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 037404 525 AATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~~ 545 (605)
...|++++|...++++.+..+
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSS
T ss_pred HHhcCHHHHHHHHHHHHHhCc
Confidence 999999999999999998543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-21 Score=196.74 Aligned_cols=434 Identities=10% Similarity=0.000 Sum_probs=294.4
Q ss_pred cchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 037404 50 YIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126 (605)
Q Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 126 (605)
..+..+...+.+.|++++|...|+++. +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 445566777778888888888887765 3466677777888888888888888888887753 225566777777778
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC------CeehHHHHHHHHHhCCChh
Q 037404 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER------DIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 200 (605)
..|++++|...++ .... .|+. ....+..+...+ ....|...+++.... ........+..+....+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~--~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERN--LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHH--HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHH--HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 8888888888875 3322 2221 122233444455 566677777766442 2223345566677777888
Q ss_pred HHHHHHhhcCCCCcc---hHHHHHHHHHcC--------CChHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCCHHHHHH
Q 037404 201 EARRLFDEMPERDAV---SWNTILDGYAKA--------GEMNLAFELFEKIPHRN---IVSWSTMVWGYSKDGDMEMAKL 266 (605)
Q Consensus 201 ~A~~~~~~~~~~~~~---~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 266 (605)
.+...+......+.. ....+...+... |++++|..+++.+.+.+ ...+..+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~------------- 244 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL------------- 244 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH-------------
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH-------------
Confidence 887777777554433 222222222221 23444444444433211 111111111
Q ss_pred HHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
.+..+...+...|++++|...|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+.
T Consensus 245 -----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 245 -----------ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred -----------HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 1444556777788888888888888875 4556777778888888888888888888887765 3367
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
.++..+...+...|++++|...|+++. +.+...|..+...|...|++++|...++++.+.. +.+...+..+..++.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 778888888999999999999888765 4466788888899999999999999999988763 335667888888899
Q ss_pred ccCCHHHHHHHHHHhHHhhCCC----CchHHHHHHHHHhhhc----------CCHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDYGIL----PQVEHYGCMIDLLGRS----------GRLKEALRLVQSM-PV-EPNAIIWGTLL 487 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~-~p~~~~~~~l~ 487 (605)
..|++++|...++++.+..... .....+......+... |++++|...|+++ .. +.+...+..++
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999998876632222 2334456667777787 9999999999987 32 34577888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
.++...|++++|...++++++..|.++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999988765443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-20 Score=178.99 Aligned_cols=292 Identities=9% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 334444444444444444444443221 12224444444444445555555554444431 11233444444444445
Q ss_pred CchHHHHHHHHHHHHcCCC--CChhHHHH------------HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFK--CNTNVCNA------------LVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGL 387 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 387 (605)
|++++|...++.+.+.... .+...+.. +...+...|++++|...++++. +.+...+..+...+
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5555555555444443210 12222222 3567788888888888888765 44667788888888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH------------HHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG------------CMI 455 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~ 455 (605)
...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+. .++
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888753 446677888888888888888888888888773 223333332 336
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEPN-A----IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
..+.+.|++++|.+.++++ ...|+ . ..+..+..++...|++++|...++++++.+|+++.++..++.++...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 6788999999999999987 32333 3 2345577889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 037404 530 WNKVANVRLQMKKT 543 (605)
Q Consensus 530 ~~~A~~~~~~~~~~ 543 (605)
+++|.+.++++.+.
T Consensus 322 ~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 322 YDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999974
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-19 Score=172.72 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----CHHHHHHH-
Q 037404 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP----DDGTLISI- 317 (605)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l- 317 (605)
.++..+..++...|++++|...|+++.+. +...|..+...+...|++++|...|+++.+. .| +...+..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH
Confidence 34444444444444555544444443321 2222455555555555555555555555543 23 12222222
Q ss_pred -----------HHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHH
Q 037404 318 -----------LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAM 383 (605)
Q Consensus 318 -----------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 383 (605)
...+...|+++.|...++.+.+.. +.+...+..+..++...|++++|...++++. +.+...+..+
T Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 194 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456677788888888888777654 3356777888888888888888888888665 3466788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHhcccCCHHHHHHHHHHhHHhhCCCCch---
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV------------GVLCACTHAGFIDKGVQYFYSMERDYGILPQV--- 448 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 448 (605)
...|...|++++|...+++..+.. +.+...+. .+...+...|++++|...++++.... +.+.
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 271 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYT 271 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHH
Confidence 888888999999999998888753 22333322 23566889999999999999998732 2222
Q ss_pred -HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 449 -EHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 449 -~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
..+..++..+...|++++|.+.++++ ...| +..++..++..+...|++++|...++++++.+|+++.++..+..+..
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33556888999999999999999988 3334 67899999999999999999999999999999999998888888765
Q ss_pred hcC
Q 037404 526 ATG 528 (605)
Q Consensus 526 ~~g 528 (605)
..+
T Consensus 352 ~~~ 354 (359)
T 3ieg_A 352 LLK 354 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=165.75 Aligned_cols=285 Identities=14% Similarity=0.054 Sum_probs=189.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
.+...+..++..+...|++++|.++|+++.+. +...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34455556666666667777777766665432 23335556666677777777777777776643 334556666666
Q ss_pred HHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 320 ACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 320 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
.+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 677777 6777777777766554 2245566777777777777777777777654 3345566667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC-------CCCchHHHHHHHHHhhhcCCHHHHH
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG-------ILPQVEHYGCMIDLLGRSGRLKEAL 468 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (605)
|...+++..+.. +.+...+..+...+...|++++|...++++..... .+.....+..++..+...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777777643 33456677777777777777777777777765221 1333567777777777777777777
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH-HhcCCh
Q 037404 469 RLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF-AATGDW 530 (605)
Q Consensus 469 ~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 530 (605)
+.++++ .. +.+...+..++..+...|++++|...++++++..|+++..+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 777776 22 234566777777777777888888888877777777777777777777 344543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-18 Score=164.80 Aligned_cols=265 Identities=11% Similarity=0.003 Sum_probs=230.5
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 037404 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353 (605)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 353 (605)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455568888899999999999999999998864 3445566677888899999999999999998865 34678889999
Q ss_pred HHHHhcC-ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH
Q 037404 354 DMYAKCG-SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 354 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 429 (605)
..+...| ++++|...|+++. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999765 3466789999999999999999999999999864 334566777889999999999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV----------EPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
+|...++++.+ ..+.+...+..++..+...|++++|.+.++++ .. +.+..++..++.++...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 44556788999999999999999999999877 11 3346788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|...++++++..|.++.++..++.++...|++++|.+.++++.+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-16 Score=165.43 Aligned_cols=461 Identities=14% Similarity=0.080 Sum_probs=292.8
Q ss_pred HHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC------------CCCcc---------
Q 037404 23 NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ------------DPDVH--------- 81 (605)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~--------- 81 (605)
...+.+++.-....++..+..| ..++.++|+|...|.-.++-.+ +.+.+-+ +.|+.
T Consensus 848 ~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g 924 (1630)
T 1xi4_A 848 EVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACVAYERG 924 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHHHhccc
Confidence 3333444444455566666667 5789999999999986544322 2221111 11111
Q ss_pred -cHHHHHHHHHhCCCchH-HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCC--CCCcchhhHHH
Q 037404 82 -LYNTLIRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY--FGDIFVPNSLI 157 (605)
Q Consensus 82 -~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 157 (605)
.-.-||...-+++.++. |.-++++ -|...|..++.- +-+.=+++.++.....+ ..++.-....+
T Consensus 925 ~~d~eli~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~v 992 (1630)
T 1xi4_A 925 QCDLELINVCNENSLFKSLSRYLVRR-------KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTV 992 (1630)
T ss_pred CCcHHHHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHH
Confidence 11223333333333332 2222211 133344443311 11122233333332222 22344456677
Q ss_pred HHHHhcCCCChHHHHHHHhccCC-CC-----eehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChH
Q 037404 158 DSYSKCGVVGVSLAKKLFMSMGE-RD-----IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 158 ~~~~~~g~~~~~~a~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
..|...| .+.+|.++++++.- ++ ...-+.++.+..+. +..+..+...+...-+ ...+...+...|.++
T Consensus 993 Kaf~~ag--lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 993 KAFMTAD--LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHH
Confidence 7888888 88888888887752 22 23455566666665 4455555555543222 344677778888888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 037404 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311 (605)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 311 (605)
+|..+|++... .....+.+ +-..+++++|.++.+++. .+..|..+..++...|++++|+..|.+. -|.
T Consensus 1067 EAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~ 1134 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDP 1134 (1630)
T ss_pred HHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CCh
Confidence 88888888642 12222222 226778888888888763 3555888888888888888888888553 356
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (605)
..|..++.+|.+.|++++|.+++....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcC
Confidence 677778888888888888888888777654 23333445888888888888644443 3456666777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 888888888874 36788888888888888888888776 34577888888888888888888776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc--CChHHHHHHHHH
Q 037404 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT--GDWNKVANVRLQ 539 (605)
Q Consensus 472 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 539 (605)
.. +..++..+..++..|.+.|.+++|+.+++.++.++|.+...+..|+.+|.+- ++..|+.++|..
T Consensus 1274 l~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1274 LH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred Hh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 65 3345666667888888888888888888888888888887777777776543 455555555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-18 Score=171.06 Aligned_cols=282 Identities=12% Similarity=-0.028 Sum_probs=205.7
Q ss_pred hcCCHHHHHH-HHhhCCCC-------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH
Q 037404 257 KDGDMEMAKL-LFDRMPAK-------TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328 (605)
Q Consensus 257 ~~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 328 (605)
-.|++++|.. .+++.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 55544321 12336666777777777777777777777653 334556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHH---------------HHHHHHHc
Q 037404 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNA---------------MLYGLAMH 390 (605)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------l~~~~~~~ 390 (605)
.|...++.+.+.. +.+..++..+..+|...|++++|...++++.. .+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777777776654 33566677777777777777777777776542 12222211 13333488
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
|++++|+..++++.+..... +..++..+..++...|++++|...++++... .+.+...+..++..+...|++++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999854221 4788899999999999999999999999872 44567899999999999999999999
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----------CchHHHHHHHHHhcCChHHHHHH
Q 037404 470 LVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-----------PGNYTMLSNIFAATGDWNKVANV 536 (605)
Q Consensus 470 ~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 536 (605)
.++++ .. +.+...+..++.++...|++++|...++++++..|.+ +.++..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 33 3457789999999999999999999999999998887 78899999999999999999999
Q ss_pred HHHHHh
Q 037404 537 RLQMKK 542 (605)
Q Consensus 537 ~~~~~~ 542 (605)
+++..+
T Consensus 353 ~~~~l~ 358 (368)
T 1fch_A 353 DARDLS 358 (368)
T ss_dssp HTTCHH
T ss_pred HHHHHH
Confidence 875543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-16 Score=164.37 Aligned_cols=383 Identities=11% Similarity=0.094 Sum_probs=298.6
Q ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHhCC--CCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHH
Q 037404 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGY--FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193 (605)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 193 (605)
.--....++|...|.+.+|.++++.+.-.+- ..+....+.|+.+..+. +..+..++.+++...+ ...+...+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 3345677888999999999999999984321 13345566677777666 4566666666665333 55688889
Q ss_pred HhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037404 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273 (605)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 273 (605)
...|.+++|..+|++....+ ...+.+ +-..+++++|.++.++. .+..+|..+..++...|++++|.+.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~~~-~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVNT-SAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCHH-HHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 99999999999999974221 112222 22778999999999977 44678999999999999999999999774
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 037404 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353 (605)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 353 (605)
.+...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.++++....+. + .++...+..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 677779999999999999999999999888754 34333445888999999888655443 2 34556677899
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 037404 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433 (605)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (605)
..|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|..
T Consensus 1203 d~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999985 58999999999999999999999876 356889999999999999999988
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhh
Q 037404 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKH--NAVELAEEVLDCLIRL 509 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 509 (605)
....+ ..++..+..++..|.+.|.+++|+.+++.. +..+. ...|.-+...+.+. ++..++.++|..-..+
T Consensus 1272 cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1272 CGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 76543 345667789999999999999999999877 55443 34666666666554 5777777777766655
Q ss_pred cC-----CCCchHHHHHHHHHhcCChHHHHHHHH
Q 037404 510 KG-----SDPGNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 510 ~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
.| .++..|..+..+|.+.|+++.|...+-
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44 567789999999999999999985443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-17 Score=165.58 Aligned_cols=347 Identities=10% Similarity=-0.005 Sum_probs=249.5
Q ss_pred ChHHHHHHHhccCC-CCeehHHHHHHHHHh----CCChhHHHHHHhhcCC-CCcchHHHHHHHHHc----CCChHHHHHH
Q 037404 167 GVSLAKKLFMSMGE-RDIVSWNSMIAGLVK----GGELSEARRLFDEMPE-RDAVSWNTILDGYAK----AGEMNLAFEL 236 (605)
Q Consensus 167 ~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~ 236 (605)
+.+.|...|++..+ .+...+..+...|.. .+++++|+..|++..+ .+...+..+...|.. .+++++|..+
T Consensus 58 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 137 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKW 137 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55555555544332 234445555555555 5566666666665522 234455555555555 5667777777
Q ss_pred HHhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 037404 237 FEKIPH-RNIVSWSTMVWGYSK----DGDMEMAKLLFDRMPAK-TLVPWTIIISGYAE----KGMAKEAARLYDQMEEAG 306 (605)
Q Consensus 237 ~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 306 (605)
|++..+ .+...+..|...|.. .+++++|.+.|++..+. ++..+..+...|.. .+++++|...|++..+.|
T Consensus 138 ~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 138 FRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 666543 345566677777766 67788888887765433 34447777777776 788888888888888764
Q ss_pred CCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCh
Q 037404 307 LKPDDGTLISILAACAE----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK----CGSLDNAMSVFNGMTK-KDL 377 (605)
Q Consensus 307 ~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~ 377 (605)
+...+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .++.++|...|++..+ .++
T Consensus 218 ---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 218 ---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 45566666666664 778889998888887765 45667777777877 8899999999987764 466
Q ss_pred hHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHhHHhhCCCCchH
Q 037404 378 VSWNAMLYGLAMH-----GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG---FIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 378 ~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
..+..+...|... +++++|+.+|++..+.| +...+..+...|...| +.++|.++|++..+. .+..
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~ 364 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKA 364 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHH
Confidence 7778888888887 89999999999998865 4556666777776656 789999999999872 4677
Q ss_pred HHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCC---CCchHH
Q 037404 450 HYGCMIDLLGR----SGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGS---DPGNYT 518 (605)
Q Consensus 450 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~ 518 (605)
.+..+...|.. .+++++|.+.|++.-...++..+..+...|.. .+++++|...|+++.+..|+ ++....
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 88888888888 89999999999988323467788888888888 89999999999999999854 777777
Q ss_pred HHHHHHHh
Q 037404 519 MLSNIFAA 526 (605)
Q Consensus 519 ~l~~~~~~ 526 (605)
.++.++..
T Consensus 445 ~l~~~~~~ 452 (490)
T 2xm6_A 445 TEKKLTAK 452 (490)
T ss_dssp HHTTSCHH
T ss_pred HHHhcCHh
Confidence 77766554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-17 Score=157.73 Aligned_cols=374 Identities=10% Similarity=0.144 Sum_probs=153.1
Q ss_pred ccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHH
Q 037404 61 LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140 (605)
Q Consensus 61 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 140 (605)
+.|+.++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 668899999999999665 48999999999999999999999653 5777999999999999999999998887
Q ss_pred HHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHH
Q 037404 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220 (605)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 220 (605)
..+. .+++.+.+.|+.+|.+.| +++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg--~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTN--RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhC--CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 7774 455778889999999999 99998877764 66779999999999999999999999977 478888
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 037404 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 221 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|+.+++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888887 377888888888888888888876666543 333334457777777788888877777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---C---
Q 037404 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---K--- 374 (605)
Q Consensus 301 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~--- 374 (605)
..+... +-....|+-+...+++- ++ +++.+.++.|..-. +
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky-~p--------------------------------~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKF-KP--------------------------------QKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTT-CH--------------------------------HHHHHHHHHHSTTSCHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhc-CH--------------------------------HHHHHHHHHHHHHhcCcHHHH
Confidence 776533 22333444443333322 11 22223333332211 0
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 375 --KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 375 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
.+...|..+...|...++++.|.. .|.++ ...-+...|-.++.--....-+-+|+.++- . -.+...
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~-----~~p~~l 346 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---E-----FKPLLL 346 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---H-----HCGGGH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---h-----cCHHHH
Confidence 145567777777777788877765 34443 111233333333322111111222333222 1 122235
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSMPV-------------EPNAIIWGTLLGACRKHNAVELAEEV 502 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~~~-------------~p~~~~~~~l~~~~~~~g~~~~A~~~ 502 (605)
+-|+.++...=+...+.++|++.+. ..+..+-.++-..|....+++.-+..
T Consensus 347 ~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~s 410 (449)
T 1b89_A 347 NDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTS 410 (449)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5566666556666666666666531 22333444555556666666544433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-17 Score=152.51 Aligned_cols=268 Identities=11% Similarity=-0.001 Sum_probs=191.1
Q ss_pred HhcCCHHHHHHHHhhCCCCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 037404 256 SKDGDMEMAKLLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331 (605)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (605)
...|+++.|+..++.....++.. ...+.++|...|+++.|+..++. .-+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34455555555555444333222 23345555566666665554433 12344555555666666666666666
Q ss_pred HHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 332 KVHASINKYRF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 332 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
+.++.+...+. +.+...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 66666665543 23456677778889999999999999998 667889999999999999999999999999986 35
Q ss_pred CHHHH---HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037404 411 DKYTF---VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGT 485 (605)
Q Consensus 411 ~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 485 (605)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++ ...| ++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 53211 22334455668999999999999983 5678889999999999999999999999997 3334 5778999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHH
Q 037404 486 LLGACRKHNAVEL-AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 486 l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
++..+...|+.++ +.++++++.+.+|+++.+. +...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999998876 6789999999999998544 4566666666665544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-16 Score=158.05 Aligned_cols=350 Identities=11% Similarity=0.008 Sum_probs=292.5
Q ss_pred CCeehHHHHHHHHHh----CCChhHHHHHHhhcCC-CCcchHHHHHHHHHc----CCChHHHHHHHHhCCC-CChhHHHH
Q 037404 181 RDIVSWNSMIAGLVK----GGELSEARRLFDEMPE-RDAVSWNTILDGYAK----AGEMNLAFELFEKIPH-RNIVSWST 250 (605)
Q Consensus 181 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~ 250 (605)
.+...+..+...|.. .+++++|+..|++..+ .+...+..+...|.. .++.++|..+|++..+ .+...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 355666677777777 8999999999998843 466778888888888 8999999999988764 46778888
Q ss_pred HHHHHHh----cCCHHHHHHHHhhCCCC-CcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037404 251 MVWGYSK----DGDMEMAKLLFDRMPAK-TLVPWTIIISGYAE----KGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321 (605)
Q Consensus 251 l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 321 (605)
|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|+..|++..+.| +...+..+...|
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9999988 88999999999987654 44457788888887 789999999999999865 567777788888
Q ss_pred Hc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhHHHHHHHHHHH---
Q 037404 322 AE----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK----CGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAM--- 389 (605)
Q Consensus 322 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~--- 389 (605)
.. .++.++|...++...+.+ +...+..+...|.. .++.++|...|++..+ .+...+..+...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLA 270 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Confidence 77 899999999999998876 56778888888886 8899999999998764 466778888888888
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-
Q 037404 390 -HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA-----GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG- 462 (605)
Q Consensus 390 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 462 (605)
.+++++|+.+|++..+.| +...+..+...|... +++++|..++++..+. .+...+..+...|...|
T Consensus 271 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGS 343 (490)
T ss_dssp SSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCC
Confidence 899999999999998765 456667777777776 8999999999999872 34567788888888766
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHH
Q 037404 463 --RLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNK 532 (605)
Q Consensus 463 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~ 532 (605)
+.++|.+.|++.-...++..+..+...|.. .+++++|...++++.+. .++.++..|+.+|.. .+++++
T Consensus 344 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 889999999988323578888899999988 89999999999999885 467889999999998 899999
Q ss_pred HHHHHHHHHhCCC
Q 037404 533 VANVRLQMKKTRA 545 (605)
Q Consensus 533 A~~~~~~~~~~~~ 545 (605)
|...+++..+.+.
T Consensus 422 A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 422 AWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999999764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-16 Score=161.22 Aligned_cols=404 Identities=11% Similarity=0.040 Sum_probs=262.0
Q ss_pred CcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC--CCeehHHHHHH
Q 037404 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIA 191 (605)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~ 191 (605)
+...+..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.| +.+.|..+|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~--~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAK--NYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 55566666663 56778888888888877642 334556777777777777 78888888877654 45555655554
Q ss_pred HH-HhCCChhHHHH----HHhhcC-----CC-CcchHHHHHHHHHc---------CCChHHHHHHHHhCCC-CCh---hH
Q 037404 192 GL-VKGGELSEARR----LFDEMP-----ER-DAVSWNTILDGYAK---------AGEMNLAFELFEKIPH-RNI---VS 247 (605)
Q Consensus 192 ~~-~~~g~~~~A~~----~~~~~~-----~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~ 247 (605)
.. ...|+.++|.+ +|++.. .| +...|...+..... .|+++.|..+|++..+ |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666554 444431 12 23344444443332 4555556666655443 111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH------HcC---CCCCH-------
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME------EAG---LKPDD------- 311 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~------- 311 (605)
|..........|. ..+..++. ...+++..|..++..+. +.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2111111000000 00111110 12345666666665532 111 23431
Q ss_pred -HHHHHHHHHHHc----cCch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHH
Q 037404 312 -GTLISILAACAE----SGLL----GLGMKVHASINKYRFKCNTNVCNALVDMYAK-------CGSLD-------NAMSV 368 (605)
Q Consensus 312 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 368 (605)
..|...+..... .++. ..+...|+++.... +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 233333332221 1232 36677888887754 4467888888888875 79987 89999
Q ss_pred HhcCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 369 FNGMTK----KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-K-YTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 369 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
|++... .+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+++.+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 997653 35788999999999999999999999999984 554 3 47888888888999999999999999772
Q ss_pred CCCCchHHHHHHHHH-hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----
Q 037404 443 GILPQVEHYGCMIDL-LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG---- 515 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 515 (605)
.+.+...+...+.. +...|+.++|.++|++. ...| +...|..++..+.+.|+.++|+.+|++++...|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 22233444333322 34689999999999987 3334 5788999999999999999999999999998777665
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+|...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78788888889999999999999998754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-18 Score=165.10 Aligned_cols=260 Identities=11% Similarity=-0.028 Sum_probs=207.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 037404 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (605)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 347778888888888888888888888764 4456778888888888888888888888887765 33577888888888
Q ss_pred HhcCChHHHHHHHhcCCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHh
Q 037404 357 AKCGSLDNAMSVFNGMTKKD-------------LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PDKYTFVGVLCAC 422 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~ 422 (605)
...|++++|...|+++...+ ...+..+...+...|++++|+..++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 88999999988888776321 123344578889999999999999999986422 1578899999999
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|...++++.+ ..+.+..++..++..|...|++++|.+.|+++ ...| +..++..++.+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999988 34556889999999999999999999999988 3334 4788999999999999999999
Q ss_pred HHHHHHHhhcCC------------CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 501 EVLDCLIRLKGS------------DPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 501 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
..++++++..|. +..++..++.++...|+.+.+....++-
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999999876 3678999999999999999998887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=159.08 Aligned_cols=284 Identities=10% Similarity=0.099 Sum_probs=123.2
Q ss_pred hcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCC
Q 037404 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241 (605)
Q Consensus 162 ~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 241 (605)
+.| ++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...
T Consensus 15 ~~~--~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIG--NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc--CHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 445 778888888887554 37888888888888888888888654 566678888888888888888888766555
Q ss_pred C--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 242 H--RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 242 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
+ +++.+.+.++.+|.+.|+++++.++++. ++..+|..++..|...|++++|...|..+ ..|..+..
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 3 3456778888888888888888777753 55567888888888888888888888765 35777888
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
++.+.|+++.|.+.+..+ .++.+|..++.+|+..|+++.|......+. .++.-...++..|.+.|++++|+.+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888777 267788888888888888888877666654 4444455678888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcc--cCCHHHHHHHHHHhHHhhCCCC------chHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 400 FSRMKDEGFGPDKYTFVGVLCACTH--AGFIDKGVQYFYSMERDYGILP------QVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 400 ~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
++...... +-....|+.+..+|++ .++..+.++.|..- .+++| +...|..+...|...++++.|...+
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 88776543 2334455555544443 34444444444322 23444 4667888888899999999888766
Q ss_pred HhC
Q 037404 472 QSM 474 (605)
Q Consensus 472 ~~~ 474 (605)
-+-
T Consensus 306 ~~h 308 (449)
T 1b89_A 306 MNH 308 (449)
T ss_dssp HHS
T ss_pred HhC
Confidence 554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-17 Score=158.54 Aligned_cols=259 Identities=11% Similarity=-0.026 Sum_probs=196.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (605)
|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 5556666666677777777777666643 2345556666666667777777777777666653 2345666667777777
Q ss_pred cCChHHHHHHHhcCCC---CChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037404 359 CGSLDNAMSVFNGMTK---KDLVSWNAM--------------LY-GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 420 (605)
.|++++|.+.++++.. .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 7777777777765542 222233222 22 3677789999999999998864 346788889999
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
.+...|++++|...++++.+ ..+.+...+..++..+...|++++|.+.++++ .. +.+...+..++..+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999987 24456788999999999999999999999987 33 3457789999999999999999
Q ss_pred HHHHHHHHHhhcCC------------CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 499 AEEVLDCLIRLKGS------------DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 499 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
|...++++.+..|. ++..+..++.++.+.|++++|..++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999998 788999999999999999999999876654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-17 Score=165.29 Aligned_cols=356 Identities=12% Similarity=0.015 Sum_probs=199.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhcC-----------CC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC----------
Q 037404 185 SWNSMIAGLVKGGELSEARRLFDEMP-----------ER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---------- 242 (605)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------- 242 (605)
.|+.+...+...|++++|++.|++.. .| ...+|..+..+|...|++++|...+++..+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 34555555555555555555554430 11 223555566666666666666655544321
Q ss_pred -CChhHHHHHHHHHHhc--CCHHHHHHHHhhCCCC---CcccHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 037404 243 -RNIVSWSTMVWGYSKD--GDMEMAKLLFDRMPAK---TLVPWTIIISG---YAEKGMAKEAARLYDQMEEAGLKPDDGT 313 (605)
Q Consensus 243 -~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~---~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 313 (605)
....++..+..++... +++++|...|++..+. ++..+..+... +...++.++|++.+++..+.. +.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 1224455544444443 3567777777765432 22223333333 334566677777777776643 223344
Q ss_pred HHHHHHHHH----ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 314 LISILAACA----ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 314 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
+..+...+. ..++.+.|.+.++...... +.+..++..+...|...|++++|...+++.. +.+..++..+...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 444433333 3456677777777776654 3355667777777788888888887777655 3344555555554
Q ss_pred HHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 387 LAM-------------------HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 387 ~~~-------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|...|+++... ...+.
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~ 368 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPV 368 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCCh
Confidence 432 233567888888877643 234456777888899999999999999988762 32222
Q ss_pred h--HHHHHHHH-HhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 448 V--EHYGCMID-LLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 448 ~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
. ..+..+.. .+...|+.++|++.|++. .+.|+..... +..+.+..++++.++.+|.++.++..++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 12333333 234678999999999887 5556543322 223455677888888899999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 037404 524 FAATGDWNKVANVRLQMKKTRAQKPSGASS 553 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 553 (605)
|...|++++|++.++++.+.+...+...+|
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHCC----------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999987655444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=162.25 Aligned_cols=258 Identities=12% Similarity=0.038 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
.+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444455555555555555555544322 22224555555555555555555555555542 2244455555555555
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHH---------------HHHHHHHHhcCChHHHHHHHhcCC---CC--ChhHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVC---------------NALVDMYAKCGSLDNAMSVFNGMT---KK--DLVSWNAM 383 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~g~~~~A~~~~~~~~---~~--~~~~~~~l 383 (605)
.|++++|...++.+.+.......... ..+.. +...|++++|...|+++. +. +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 55555555555555544322111111 02233 337788888888887665 22 46778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
...|...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.+. .+.+...+..++..|.+.|+
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCC
Confidence 888888888888888888888753 335677888888888889999999888888772 34567788888888889999
Q ss_pred HHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 464 LKEALRLVQSM-PVEP------------NAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+++|.+.|+++ ...| ...+|..+..++...|++++|..++.+.++.
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99998888876 1111 1578888999999999999998888765553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-17 Score=152.84 Aligned_cols=247 Identities=11% Similarity=0.065 Sum_probs=202.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDD--GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
++-....|++..|+..++.... ..|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4455678999999999887644 34543 3446678899999999999876644 23556778888999999999
Q ss_pred ChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 037404 361 SLDNAMSVFNGMT-----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 361 ~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
+.++|.+.++++. +.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 23567778888999999999999999987 457788999999999999999999999
Q ss_pred HHhHHhhCCCCchHH---HHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 436 YSMERDYGILPQVEH---YGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999883 344321 123345555669999999999998 345678899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 037404 511 GSDPGNYTMLSNIFAATGDWNK-VANVRLQMKKTR 544 (605)
Q Consensus 511 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 544 (605)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578999998853
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-15 Score=155.25 Aligned_cols=408 Identities=12% Similarity=0.059 Sum_probs=284.3
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHH
Q 037404 77 DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156 (605)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (605)
+.+...|..++. +.+.|++++|..+|+++.+. .+-+...+...+..+.+.|+++.|..+|+.+++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778998898 57899999999999999986 34466678888999999999999999999998864 566677777
Q ss_pred HHHH-HhcCCCChHHHHH----HHhccC-----C-CCeehHHHHHHHHHh---------CCChhHHHHHHhhcCC-CCc-
Q 037404 157 IDSY-SKCGVVGVSLAKK----LFMSMG-----E-RDIVSWNSMIAGLVK---------GGELSEARRLFDEMPE-RDA- 214 (605)
Q Consensus 157 ~~~~-~~~g~~~~~~a~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~- 214 (605)
+... ...| +.+.|.+ +|+... . .+...|...+....+ .|+++.|..+|++.+. |+.
T Consensus 86 ~~~~~~~~~--~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 86 LSYVRETKG--KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHTT--TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHcc--chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 6533 3456 6666554 665432 1 345678877776655 6899999999999854 322
Q ss_pred --chHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-------CC------CCC----
Q 037404 215 --VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR-------MP------AKT---- 275 (605)
Q Consensus 215 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~---- 275 (605)
..|..........|. ..+..++.. +.++++.|..++.. +. .+.
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 122221111100110 111111111 22334444443332 11 111
Q ss_pred ----cccHHHHHHHHHhC----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCchH-------H
Q 037404 276 ----LVPWTIIISGYAEK----GMA----KEAARLYDQMEEAGLKPDDGTLISILAACAE-------SGLLG-------L 329 (605)
Q Consensus 276 ----~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~ 329 (605)
...|...+...... ++. .++..+|++.+... +.+...|......+.+ .|+++ .
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 11244444332221 232 47788999988752 4456677777776664 68887 8
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KK-DL-VSWNAMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|..+|++..+
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998863334568889999999999999999999999876 33 33 4788899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-
Q 037404 406 EGFGPDKYTFVGVLCA-CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN- 479 (605)
Q Consensus 406 ~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~- 479 (605)
.. +.+...+...... +...|+.++|..+|+...+. .+.+...|..++..+.+.|+.++|..+|+++ +..|+
T Consensus 385 ~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 52 2233333332222 34689999999999999884 3446788999999999999999999999987 22332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 480 -AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 480 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
...|...+......|+.+.+..+..++.+..|.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 457888888888999999999999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=156.56 Aligned_cols=232 Identities=10% Similarity=0.027 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999876 3468889999999999999999999999876 4567899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDK-----------YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|...++++.+.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2233457789999999999999999988422222688999999
Q ss_pred HHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
..|...|++++|.+.++++ .. +.+..+|..++.++...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 33 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 037404 534 ANVRLQMKKTR 544 (605)
Q Consensus 534 ~~~~~~~~~~~ 544 (605)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998854
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=152.13 Aligned_cols=259 Identities=8% Similarity=-0.028 Sum_probs=161.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 33444444444555555544444322 122224445555555555555555555555542 22344555555555555
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHH--------------HH-HHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNAL--------------VD-MYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
|+++.|...++.+.+.... +...+..+ .. .+...|++++|...++++. +.+...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 5555555555555544321 11222222 22 3566677777777777654 3456777777888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+ ..+.+...+..++..|.+.|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHH
Confidence 888888888888888877753 33566777788888888888888888888876 234456777888888888888888
Q ss_pred HHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 467 ALRLVQSM-PVEP-------------NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 467 A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
|.+.++++ ...| +...+..+..++...|++++|..+++++++..|
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 88888776 2223 356777888888888888888888877666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=136.89 Aligned_cols=196 Identities=11% Similarity=-0.024 Sum_probs=155.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 343 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
+++...+..+...+.+.|++++|...|++.. +.++..|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4566777888888889999999999988765 4466788888899999999999999999988853 33567788888
Q ss_pred HHhccc-----------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037404 420 CACTHA-----------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLL 487 (605)
Q Consensus 420 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 487 (605)
.++... |++++|+..++++.+ ..+.+...+..+...|...|++++|++.|+++ ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 999999999999987 23446788899999999999999999999987 2227788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.++...|++++|+..++++++.+|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-15 Score=138.17 Aligned_cols=217 Identities=10% Similarity=-0.045 Sum_probs=162.4
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC-------hhHHHHH
Q 037404 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KD-------LVSWNAM 383 (605)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-------~~~~~~l 383 (605)
+..+...+...|++++|...+..+.+.. .+...+..+..++...|++++|...+++... .+ ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444445555555555555544444 3445555555566666666666666555441 11 4667778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
...|...|++++|...|+++.+. .|+.. .+...|++++|...++.+.. ..+.+...+..++..+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888874 45532 45566788999999998876 344456788889999999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 464 LKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 464 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+++|.+.++++ . .+.+...+..++.++...|++++|...++++++..|.++..+..++.++...|++++|.+.++++.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999987 2 234577889999999999999999999999999999999999999999999999999999999998
Q ss_pred hC
Q 037404 542 KT 543 (605)
Q Consensus 542 ~~ 543 (605)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-15 Score=137.70 Aligned_cols=234 Identities=13% Similarity=-0.016 Sum_probs=181.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--C----hhHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC--N----TNVCNAL 352 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l 352 (605)
|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+..... + ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 5556667777777777777777777765 566777777777777788888877777766543211 1 4677788
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKG 431 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a 431 (605)
...+...|++++|...|+++...++. ...+...|++++|...++++... .| +...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHH
Confidence 88888888888888888876632211 24566678899999999998885 34 446778888889999999999
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
...++++.. ..+.+...+..++..|...|++++|.+.++++ .. +.+...+..++.++...|++++|...++++++.
T Consensus 159 ~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999987 34556788999999999999999999999987 33 345778999999999999999999999999999
Q ss_pred c------CCCCchHHHHHHH
Q 037404 510 K------GSDPGNYTMLSNI 523 (605)
Q Consensus 510 ~------p~~~~~~~~l~~~ 523 (605)
. |.+..++..+..+
T Consensus 237 ~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHHT
T ss_pred ChhhcCCCchHHHHHHHHHh
Confidence 8 7777766666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-15 Score=149.67 Aligned_cols=376 Identities=10% Similarity=-0.051 Sum_probs=200.7
Q ss_pred CcccHHHHHHHhhccCCHHHHHHHHHHHHHh-----C--CCC-CcchhhHHHHHHHhcCCCChHHHHHHHhccCC-----
Q 037404 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKC-----G--YFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE----- 180 (605)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~----- 180 (605)
....|+.+...+...|+.++|.+.+++.++. + ..| ...+|+.+...|...| ++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhc
Confidence 4456788888888889999999988887653 1 122 2346777888888888 88888777765421
Q ss_pred --C----CeehHHHHHHHHHh--CCChhHHHHHHhhc--CCCC-cchHHHHHHH---HHcCCChHHHHHHHHhCCC---C
Q 037404 181 --R----DIVSWNSMIAGLVK--GGELSEARRLFDEM--PERD-AVSWNTILDG---YAKAGEMNLAFELFEKIPH---R 243 (605)
Q Consensus 181 --~----~~~~~~~li~~~~~--~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~---~ 243 (605)
+ ...++..+..++.. .+++++|+..|++. ..|+ ...+..+..+ +...++.++|++.+++..+ .
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 12234444444443 34577788877777 3443 2233333322 3345566666666655432 2
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 037404 244 NIVSWSTMVWGYSK----DGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLI 315 (605)
Q Consensus 244 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~ 315 (605)
+..++..+...+.. .+++++|.+.+++... .....+..+...|...|++++|+..+++..+. .|+ ...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 33444444444333 3455666666665432 22233566666666677777777777666654 233 33333
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 392 (605)
.+..+|...+.... ... ...........+..+.|...+++.. +.+...+..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 33333321111000 000 0000000111233566777776654 4466788899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKY--TFVGVLC-ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
+++|+..|++..+....+... .+..+.. .....|+.++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998864333221 2222222 24578999999999999876 34543322222 223334
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 470 LVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 470 ~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
++++. . .+.+..+|..++.++...|++++|++.|+++++..|.+|.+...+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44433 1 2345778999999999999999999999999999999888776665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-17 Score=167.87 Aligned_cols=147 Identities=11% Similarity=0.101 Sum_probs=122.1
Q ss_pred CcchHHHHHHHhccCChhHHHHHhcccC-------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 037404 49 PYIAPKLISSLALCRQMGLAIKVFNDIQ-------DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121 (605)
Q Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 121 (605)
..+||+||++||++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999997753 699999999999999999999999999999999999999999999
Q ss_pred HHHhhccCC-HHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC-----CCeehHHHHHHHHHh
Q 037404 122 LKACNGKNW-FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-----RDIVSWNSMIAGLVK 195 (605)
Q Consensus 122 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~ 195 (605)
|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+ -++.+.++...+.. +.+.+...|.+.|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~--vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT--VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH--HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH--HHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999997 4789999999999999999999999998886655 33333333222221 123455556666766
Q ss_pred CC
Q 037404 196 GG 197 (605)
Q Consensus 196 ~g 197 (605)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=134.91 Aligned_cols=241 Identities=8% Similarity=-0.072 Sum_probs=187.1
Q ss_pred hCCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLK---PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 134567777788888888888888888888765 3367788889999999999999
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 365 AMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 365 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
|...|+++. +.+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998776 446788999999999999999999999999885 455444444555567779999999999888773
Q ss_pred hCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.+++...+. ++..+...++.++|.+.++++ ...|+ ...+..++..+...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 344444444 677778888899999999887 33332 467888999999999999999999999999987754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 037404 516 NYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 467888899999998876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-14 Score=133.27 Aligned_cols=243 Identities=9% Similarity=-0.080 Sum_probs=125.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhc
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN--TNVCNALVDMYAKC 359 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 359 (605)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444431 11222344444444444444444444444444211111 12244555555555
Q ss_pred CChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
|++++|...|++.. +.+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|...++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555443 2344455555555555566666665555555431 2233444444422333346666666666
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGR---LKEALRLVQSM----PVEPN------AIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
++.+. .+.+...+..+...+...|+ +++|...++++ ...|+ ..++..+...+...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66552 22334555555555555555 55555555544 11122 246777888888999999999999
Q ss_pred HHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 504 DCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+++++.+|+++.+...+..+....+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999988888877665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-14 Score=141.31 Aligned_cols=342 Identities=12% Similarity=0.030 Sum_probs=203.4
Q ss_pred HHHHHHhCCChhHHHHHHhhcCC-CCcchHHHHHHHHHcCCCh---HHHHHHHHhCCCCChhHHHHHHHHHHhcC-----
Q 037404 189 MIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEM---NLAFELFEKIPHRNIVSWSTMVWGYSKDG----- 259 (605)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 259 (605)
+...+.+.|++++|+.+|++..+ .+...+..+...|...|+. ++|..+|++..+.+...+..|..++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34444555666666666665522 2333444444445555555 66666666666555555666666444444
Q ss_pred CHHHHHHHHhhCCCCC-cccHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMA---KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 335 (605)
++++|...|++..+++ ...+..|...|...+.. .++...+....+.| +......+...|...+.++.+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 5667777776655433 33466666666655443 33444555554444 23344555566666665544444433
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhcCCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHHHH
Q 037404 336 SINKYRFKCNTNVCNALVDMYAKCG---SLDNAMSVFNGMTK---KDLVSWNAMLYGLAMH----GQGEKALGLFSRMKD 405 (605)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~ 405 (605)
.+.+.-...++..+..|..+|...| +.++|.+.|++..+ ++...+..+...|... +++++|+.+|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 3332222234447777888888888 88888888876653 2333335666666544 68888999888876
Q ss_pred CCCCCCHHHHHHHHHH-h--cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-----CHHHHHHHHHhCCCC
Q 037404 406 EGFGPDKYTFVGVLCA-C--THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG-----RLKEALRLVQSMPVE 477 (605)
Q Consensus 406 ~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 477 (605)
.| +...+..+... + ...+++++|..+|++..+ .| +...+..|...|. .| ++++|.+.|++.- .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 34444555544 3 458889999999988876 23 5667777777776 55 8999999999887 6
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037404 478 PNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 478 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 545 (605)
.++.....+...|.. ..++++|...++++.+ +.++..+..|+.+|.. ..+.++|..++++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 677777788877765 3489999999998876 4567788889988875 3588899999999888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=127.16 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 422 (605)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556667777777788888887777654 3456777778888888888888888888887753 33566777788888
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 499 (605)
...|++++|..+++++.. .+..| +...+..++..+...|++++|.+.++++ .. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888765 23344 4667778888888888888888888876 22 33567788888888888999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999888888888888888888889999999999998888754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-13 Score=123.90 Aligned_cols=221 Identities=14% Similarity=0.008 Sum_probs=152.1
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhHHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK----CGSLDNAMSVFNGMTK-KDLVSWNAMLYGL 387 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 387 (605)
.+..+...+...|++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .++..+..+...|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444444445555555555444421 33445555555555 6666666666655442 2455666666677
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 388 AM----HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH----AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 388 ~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+ .+ +...+..+...|.
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHH
Confidence 77 777778888887777754 56667777777777 7888888888888776 23 4556677777777
Q ss_pred h----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----c
Q 037404 460 R----SGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----T 527 (605)
Q Consensus 460 ~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 527 (605)
. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+..| +..+..++.+|.. .
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcc
Confidence 7 78888888888876212356777778888888 8899999999998888755 6678888889988 8
Q ss_pred CChHHHHHHHHHHHhCCC
Q 037404 528 GDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~~~ 545 (605)
|++++|.+.+++..+.+.
T Consensus 236 ~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCSTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 899999999998888653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=130.40 Aligned_cols=197 Identities=11% Similarity=0.071 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
....+..+...+...|++++|...|+++. +.+...+..+...|...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 44556667777788888888888887664 3356777888888888888999998888888753 3366778888888
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A 499 (605)
+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999888772 3456777888888889999999999998887 2 234577888888889999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...++++.+..|.++.++..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999889888899999999999999999999999988753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-13 Score=122.72 Aligned_cols=197 Identities=10% Similarity=-0.028 Sum_probs=150.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
+...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34556666677777777777777776554 3356677777788888888888888888877753 3356677778888
Q ss_pred hccc-CCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 037404 422 CTHA-GFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVE 497 (605)
Q Consensus 422 ~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 497 (605)
+... |++++|...++++.+ .+..| +...+..++..+...|++++|.+.++++ ... .+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 23333 3567778888888888888888888876 222 34677888888888889999
Q ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 498 LAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 498 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|...++++.+..| .++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999888888 88888888888888889999998888888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=155.99 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=104.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT-------KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 417 (605)
-..+|+++|++|++.|++++|.++|.+|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34678889999999999999998886643 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCC-HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 418 VLCACTHAGF-IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 418 ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+|.++++.|+ .++|.++|++|.. .|+.||..+|++++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999887 4788899999998 59999999999888766665444333333
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.2e-14 Score=139.23 Aligned_cols=311 Identities=11% Similarity=0.018 Sum_probs=220.4
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCCcccHHHHHHHHHhCC----
Q 037404 219 TILDGYAKAGEMNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDM---EMAKLLFDRMPAKTLVPWTIIISGYAEKG---- 290 (605)
Q Consensus 219 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---- 290 (605)
.+...+.+.|++++|.++|++..+ .+...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 356677888999999999988754 4556677777888888888 99999999988776666888888666655
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----h
Q 037404 291 -MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG---LGMKVHASINKYRFKCNTNVCNALVDMYAKCGS----L 362 (605)
Q Consensus 291 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~ 362 (605)
++++|+..|++..+.|.. + .+..+...|...+..+ .+.+.+......| ++.....+...|...+. .
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 788999999999997633 3 4555666666555433 3444555555544 45677778888888884 4
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc----CCHHHHHHHH
Q 037404 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHG---QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA----GFIDKGVQYF 435 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~ 435 (605)
+.+..+++.....++..+..+...|...| ++++|+..|++..+.| .++...+..+...|... +++++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 55556666767777889999999999999 9999999999999987 56666656677677655 7999999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHH-h--hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 037404 436 YSMERDYGILPQVEHYGCMIDL-L--GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN-----AVELAEEVLDCLI 507 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 507 (605)
++.. +-+...+..+... | ...+++++|.+.|++.-...+...+..+...|. .| ++++|...|+++.
T Consensus 241 ~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9985 3456677777776 4 568999999999998832347778888888887 55 9999999999988
Q ss_pred hhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037404 508 RLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 508 ~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 545 (605)
|.++..+..|+.+|.. ..++++|..++++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8889999999999987 3499999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=127.65 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=188.1
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KDL----VSWNAMLYG 386 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~ 386 (605)
.+......+...|+++.|...++.+.+... .+...+..+..+|...|++++|...++++.. ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345567788899999999999999988753 3566888899999999999999999987764 333 348899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
|...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+ ..+.+...+..++..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999853 33567889999999999999999999999976 344467778888834445569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhc---CCC-----CchHHHHHHHHHhcCChHHH
Q 037404 467 ALRLVQSM-PVEP-NAIIWGTLLGACRKHNA---VELAEEVLDCLIRLK---GSD-----PGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 467 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 533 (605)
|.+.|+++ ...| +...+..+..++...|+ +++|...++++.+.. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 3334 46778888888888888 888999999999875 442 25788899999999999999
Q ss_pred HHHHHHHHhCC
Q 037404 534 ANVRLQMKKTR 544 (605)
Q Consensus 534 ~~~~~~~~~~~ 544 (605)
.+.++++.+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999854
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-13 Score=131.55 Aligned_cols=244 Identities=10% Similarity=0.082 Sum_probs=185.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-hHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL-LGLGMKVHASINKYRFKCNTNVCNALVDMYA 357 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (605)
|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+.+... .+...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 5666667777777788888887777753 2345566677777777775 8888888877777653 36777888888888
Q ss_pred hcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-cCCHHHH--
Q 037404 358 KCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKG-- 431 (605)
Q Consensus 358 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a-- 431 (605)
..|++++|+..|+++. +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 8888888888888766 4567888888888888999999999999988853 2356778888888887 5554666
Q ss_pred ---HHHHHHhHHhhCCCCchHHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---------CH
Q 037404 432 ---VQYFYSMERDYGILPQVEHYGCMIDLLGRSG--RLKEALRLVQSMPVEP-NAIIWGTLLGACRKHN---------AV 496 (605)
Q Consensus 432 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g---------~~ 496 (605)
+..+++++. -.+-+...|..+...+...| ++++|.+.+.++...| +...+..++..+.+.| .+
T Consensus 257 ~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 477888876 23446778888888888888 6889998888774444 4668888888888764 35
Q ss_pred HHHHHHHHHH-HhhcCCCCchHHHHHHHHHhc
Q 037404 497 ELAEEVLDCL-IRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 497 ~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 527 (605)
++|+.+++++ .+.+|.....|..++..+...
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8999999999 899999999999888876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-14 Score=128.71 Aligned_cols=209 Identities=11% Similarity=0.003 Sum_probs=143.1
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 392 (605)
.+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. +.+...+..+...|...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 33334444444444444444444322 2234555556666666666666666666544 3356677777888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+ ..+.+...+..++..+.+.|++++|.+.++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888753 34667788888888899999999999998877 234567788889999999999999999998
Q ss_pred hC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 473 SM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 473 ~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
++ . .+.+..++..++.++...|++++|...++++.+..|+++..+..++.+....|
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 87 2 23457788999999999999999999999999999999988887766554433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-13 Score=122.55 Aligned_cols=203 Identities=13% Similarity=-0.044 Sum_probs=149.8
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAM 389 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 389 (605)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++. +.+...+..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444445555555555555555555443 2245556666666777777777777776554 3356677777888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHH
Q 037404 390 HGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468 (605)
Q Consensus 390 ~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (605)
.|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887733445 3456777888888999999999999988772 3446778888999999999999999
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 469 RLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 469 ~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
+.++++ .. +.+...+..+...+...|++++|.+.++++.+..|+++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999887 33 345677888889999999999999999999999999876554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-13 Score=118.36 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=143.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+.. ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 56678888899999999999999999988853 23567788888899999999999999999877 3445667788888
Q ss_pred HHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
..+...++++.|.+.+.+. .. +.+...+..++..+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999887 32 345778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 037404 534 ANVRLQMKKTR 544 (605)
Q Consensus 534 ~~~~~~~~~~~ 544 (605)
++.++++.+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999854
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=139.43 Aligned_cols=262 Identities=11% Similarity=-0.014 Sum_probs=182.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHc----C-CCCChhHHHH
Q 037404 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLISILAACAESGLLGLGMKVHASINKY----R-FKCNTNVCNA 351 (605)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 351 (605)
.+...+...|++++|+..|+++.+.+. .+. ..+..+...+...|+++.|...++.+.+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 345556666666666666666666421 122 24555666666667777777666665432 1 1122355666
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKK---------DLVSWNAMLYGLAMHGQ-----------------GEKALGLFSRMKD 405 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~ 405 (605)
+...|...|++++|...+++.... ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 777777777777777777655421 23467777778888888 8888888877654
Q ss_pred C----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 037404 406 E----GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-P 475 (605)
Q Consensus 406 ~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 475 (605)
. +-.+ ...++..+...+...|++++|...++++.+...-.++ ...+..++..|...|++++|.+.++++ .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1112 2246777888899999999999999888763211112 237788899999999999999999876 1
Q ss_pred C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 476 V---EP----NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 476 ~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
. .. ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 11 14577888899999999999999999999875433 34788999999999999999999999987
Q ss_pred C
Q 037404 543 T 543 (605)
Q Consensus 543 ~ 543 (605)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=132.03 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHhcCC---CCChhHHHHHHHHH
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS-LDNAMSVFNGMT---KKDLVSWNAMLYGL 387 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 387 (605)
..+..+...+...|++++|...+..+.+... -+..+|+.+..++...|+ +++|+..|+++. +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566777788899999999999999998763 467889999999999997 999999999876 45778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh-cCCHHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR-SGRLKE 466 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 466 (605)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++ -.+-+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999853 33678899999999999999999999999988 344578899999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC---------
Q 037404 467 A-----LRLVQSM-PVEP-NAIIWGTLLGACRKHN--AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG--------- 528 (605)
Q Consensus 467 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 528 (605)
| ++.++++ .+.| +...|..+...+...| ++++|.+.+.++ +.+|+++.++..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777776 3344 4678888888888888 689999999998 888999999999999999875
Q ss_pred ChHHHHHHHHHH-HhC
Q 037404 529 DWNKVANVRLQM-KKT 543 (605)
Q Consensus 529 ~~~~A~~~~~~~-~~~ 543 (605)
.+++|+++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 258999999998 663
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=117.58 Aligned_cols=205 Identities=11% Similarity=-0.058 Sum_probs=148.0
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAM 389 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 389 (605)
.+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++. +.+...+..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444445555555555555555554433 2234556666666666777777777666554 3356677778888888
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH
Q 037404 390 H-GQGEKALGLFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467 (605)
Q Consensus 390 ~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (605)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888887333443 466777888888999999999999988772 344577888899999999999999
Q ss_pred HHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 468 LRLVQSM-PV-E-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 468 ~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999887 22 2 4566777777888899999999999999999999988765544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-13 Score=119.66 Aligned_cols=111 Identities=18% Similarity=0.068 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
|++++|+..+++..+. .| +...+..+..++...|++++|+..|+++.+ .. .+...+..++.+|...|++++|..
T Consensus 98 g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555544442 22 233444444445555555555555555544 12 344444555555555555555555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 470 LVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 470 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
.|+++ ...| +...+..+...+...|++++|+..++++
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55544 1122 3344444555555555555555555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=134.83 Aligned_cols=129 Identities=11% Similarity=-0.056 Sum_probs=68.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCCC----HH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-P---VEPN----AI 481 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~ 481 (605)
++..+...+...|++++|...++++.+...-.++ ...+..++..|...|++++|...+++. . ..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3445555556666666666666555442111111 224555556666666666666666554 0 0111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++..++..+...|++++|...++++.+..+.. +.++..++.+|...|++++|.+.+++..+
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555566666666666666666666553322 33555666666666666666666666544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=131.33 Aligned_cols=261 Identities=11% Similarity=0.003 Sum_probs=181.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHc----CCC-CChhHHHHH
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPD----DGTLISILAACAESGLLGLGMKVHASINKY----RFK-CNTNVCNAL 352 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 352 (605)
....+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 4455566666666766666666642 112 234555566666667777776666655432 111 124456667
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQ--------------------GEKALGLFSRM 403 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m 403 (605)
...|...|++++|...+++... .+ ..++..+...|...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777888888777766541 12 2366777778888888 88888888776
Q ss_pred HHC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 404 KDE----GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 404 ~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
... +-.+ ...++..+...+...|++++|...++++.+.....++ ...+..++..+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 1111 1245777788889999999999999888752111111 337788899999999999999999876
Q ss_pred -C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 475 -P---VEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 475 -~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
. ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1122 4577788899999999999999999999875433 347889999999999999999999999
Q ss_pred HhC
Q 037404 541 KKT 543 (605)
Q Consensus 541 ~~~ 543 (605)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 875
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-12 Score=119.57 Aligned_cols=224 Identities=11% Similarity=-0.002 Sum_probs=174.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 037404 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE----SGLLGLGMKVHASINKYRFKCNTNVCNAL 352 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 352 (605)
..+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33555666677777777777777777762 234556666667777 777788888777777765 56677777
Q ss_pred HHHHHh----cCChHHHHHHHhcCCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 353 VDMYAK----CGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAM----HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 353 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 888887 8888888888876653 366778888888888 899999999999988865 5666777777777
Q ss_pred c----cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh--
Q 037404 424 H----AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----SGRLKEALRLVQSM-PVEPNAIIWGTLLGACRK-- 492 (605)
Q Consensus 424 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-- 492 (605)
. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.+++. ... +...+..+...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCC
Confidence 7 89999999999998872 346778888889988 99999999999987 333 36778888888988
Q ss_pred --cCCHHHHHHHHHHHHhhcCCCC
Q 037404 493 --HNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 493 --~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.+++++|...++++.+..|+++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=138.47 Aligned_cols=209 Identities=8% Similarity=-0.042 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL-DNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
++.+...+....... +.+...+..+...+...|++ ++|++.|++.. +.+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444454443322 34667777888888888888 88888888765 44577889999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhccc---------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc--------CCHH
Q 037404 403 MKDEGFGPDKYTFVGVLCACTHA---------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS--------GRLK 465 (605)
Q Consensus 403 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 465 (605)
..+. .|+...+..+..++... |++++|...++++.+ -.+.+...|..++.+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9885 57778888899999999 999999999999988 3445678899999999998 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 466 EALRLVQSM-PVEP----NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 466 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+|++.|+++ ...| +...|..+..++...|++++|...++++++.+|+++.++..++.++...|++++|++.++++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 4445 68899999999999999999999999999999999999999999999999999999765443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-13 Score=125.02 Aligned_cols=218 Identities=12% Similarity=0.013 Sum_probs=178.1
Q ss_pred HccCchHHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 322 AESGLLGLGMKVHASINKYRF---KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
...|++++|...++.+.+... +.+..++..+...+...|++++|...|+++. +.+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345889999999999987642 1246778889999999999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
|+..|+++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999863 335678889999999999999999999999873 344444444555567789999999999776
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 475 -PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS----DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 475 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|...++++.+..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 223333333 4677778888999999999999887653 36789999999999999999999999999854
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=136.24 Aligned_cols=254 Identities=9% Similarity=-0.042 Sum_probs=159.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----CCChhH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEA----GLKPD-DGTLISILAACAESGLLGLGMKVHASINKYRF-----KCNTNV 348 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 348 (605)
|..+...+...|++++|...+++.... +..|. ...+..+...+...|+++.|...+..+.+... .....+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 334444444455555555544443321 11111 22334444455555555555555554432210 001234
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCChHHHHHH
Q 037404 349 CNALVDMYAKCGS--------------------LDNAMSVFNGMTK-----K----DLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 349 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+..+...|...|+ +++|...+++... . ...++..+...|...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5555666666666 6666666554331 1 124677778888888999999888
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHH
Q 037404 400 FSRMKDEGF-GPD----KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 400 ~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+++..+... .++ ..++..+...+...|++++|...++++.....-.++ ..++..++..|...|++++|.+.
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 888764210 112 236777888899999999999999887652111111 55778889999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC------CCchHHHHHHHHHhcCChHH
Q 037404 471 VQSM----PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS------DPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 471 ~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 532 (605)
++++ +..++ ..++..+...+...|++++|...++++++..+. ...++..++.++...|+...
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9876 11122 457788889999999999999999999987432 24567888889888887643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-11 Score=121.86 Aligned_cols=218 Identities=7% Similarity=-0.053 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM-KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 371 (605)
+.+..+|++.+.. .+-+...|...+..+...|+.+.|. .+++...... +.+...+...+....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456778888775 3446677777777778888888886 9999988643 45666777888888899999999999987
Q ss_pred CCC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcc-
Q 037404 372 MTK-------------KD------------LVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTH- 424 (605)
Q Consensus 372 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~- 424 (605)
+.. |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 653 21 236788888888899999999999999885 2 1223334333332233
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHH
Q 037404 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP----NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A 499 (605)
.++.+.|..+|+...+. ++.+...+..++......|+.+.|..+|+++ ...| ....|...+..-.+.|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35589999999999984 4456667788888888999999999999987 3333 245788888888899999999
Q ss_pred HHHHHHHHhhcCCCCc
Q 037404 500 EEVLDCLIRLKGSDPG 515 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~ 515 (605)
..+.+++.+..|+++.
T Consensus 561 ~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCCcH
Confidence 9999999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-12 Score=110.99 Aligned_cols=167 Identities=8% Similarity=-0.006 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
+..+|..+...|...|++++|++.|++.. +.++.+|..+...|...|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 46678888888888888888888888765 4467788888899999999999999999888753 3356677777788
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A 499 (605)
+...++++.|...+.++.. ..+.+...+..++..|.+.|++++|++.|++. ... .+..++..++.++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999887 34556778889999999999999999999987 333 4577899999999999999999
Q ss_pred HHHHHHHHhhcCCCC
Q 037404 500 EEVLDCLIRLKGSDP 514 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~ 514 (605)
+..++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-11 Score=112.84 Aligned_cols=218 Identities=11% Similarity=0.025 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACA-------ESGLL-------GLGMKVHASINKYRFKCNTNVCNALVDMYAK 358 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (605)
++|..+|++.+... +.+...|..++..+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 334445555554443 23554 6666666666653112344566666666666
Q ss_pred cCChHHHHHHHhcCCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccCCHHHHHH
Q 037404 359 CGSLDNAMSVFNGMTK--K-DLV-SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-THAGFIDKGVQ 433 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 433 (605)
.|++++|..+|+++.. | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777666665542 2 233 56666666666667777777776666542 22333333322221 12566666666
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037404 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P---VEP--NAIIWGTLLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
+|+.+.+. .+.+...|..++..+.+.|++++|..+|+++ . .+| ....|..++....+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666652 2334556666666666666666666666665 1 233 24456666666666666666666666666
Q ss_pred hhcCCCC
Q 037404 508 RLKGSDP 514 (605)
Q Consensus 508 ~~~p~~~ 514 (605)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 6666544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=129.83 Aligned_cols=199 Identities=10% Similarity=-0.046 Sum_probs=128.9
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHHhcCC-----------------hHHHHHHHhc
Q 037404 314 LISILAACAESGLLGLGMKVHASINKY----R-FKCNTNVCNALVDMYAKCGS-----------------LDNAMSVFNG 371 (605)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 371 (605)
+..+...+...|+++.|...+..+.+. + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 334444444445555554444443322 0 01122345555555666666 6666555554
Q ss_pred CCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 372 MTK-----K----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-GPD----KYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 372 ~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
... . ...++..+...|...|++++|+..+++..+... .++ ..++..+..++...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 321 1 224667777888888888888888888765311 011 23677788889999999999999988
Q ss_pred hHHhhCCCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037404 438 MERDYGILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV---EPN----AIIWGTLLGACRKHNAVELAEEVLDC 505 (605)
Q Consensus 438 ~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 505 (605)
+.....-.. ...++..++..|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 766321111 2467788899999999999999999876 11 111 34777888999999999999999999
Q ss_pred HHhhcCC
Q 037404 506 LIRLKGS 512 (605)
Q Consensus 506 ~~~~~p~ 512 (605)
++++.+.
T Consensus 369 al~~~~~ 375 (411)
T 4a1s_A 369 HLQLAXX 375 (411)
T ss_dssp HHHHCCH
T ss_pred HHHHHhh
Confidence 9987543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-12 Score=113.06 Aligned_cols=188 Identities=11% Similarity=0.002 Sum_probs=105.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---K-KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVL 419 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll 419 (605)
++..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 44555566666666666666666666544 2 44555555666666666666666666666653 33 334555566
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCch-------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQV-------EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN---AIIWGTLLG 488 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~ 488 (605)
.++...|++++|...++++.+. .+.+. ..|..+...+...|++++|.+.|+++ ...|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666666666666666666552 12222 34555555666666666666666655 34444 234445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++... +...++++..+.+.++..+. .......|.+++|+..+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55332 33344555554444433332 22333445569999999999984
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-12 Score=123.20 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=59.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHh---hCC-CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-----CCC-HHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERD---YGI-LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-----EPN-AII 482 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~ 482 (605)
++..+..+|...|++++|...++++..- .+. +....++..++..|.+.|++++|.+.+++. .+ .|. ...
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444455555555555555444331 012 222334445555555555555555555443 00 111 112
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 483 WGTLLGACRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 483 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+..+...+...|+ +++|..++++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444555555 44444444443 11223334455566666666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=125.41 Aligned_cols=288 Identities=10% Similarity=0.001 Sum_probs=208.3
Q ss_pred HHcCCChHHHHHHHHhCCC--------CChhHHHHHHHH--HHhcCCHHHHH-----------HHHhhCCCCCc--cc--
Q 037404 224 YAKAGEMNLAFELFEKIPH--------RNIVSWSTMVWG--YSKDGDMEMAK-----------LLFDRMPAKTL--VP-- 278 (605)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~--~~-- 278 (605)
+.+.+++++|..+++++.+ ++...|..++.. ..-.++++.+. +.++.+..... ..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4578999999999876532 233344444332 11223333333 44444422111 11
Q ss_pred ----HHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC------
Q 037404 279 ----WTIIISGYAEKGMAKEAARLYDQMEEAGL-KPD----DGTLISILAACAESGLLGLGMKVHASINKYRFK------ 343 (605)
Q Consensus 279 ----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------ 343 (605)
+......+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+....+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 12255677889999999999999986410 122 356778888999999999999999988753211
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC
Q 037404 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----KDL----VSWNAMLYGLAMHGQGEKALGLFSRMKDE----GFGP 410 (605)
Q Consensus 344 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p 410 (605)
....+++.+...|...|++++|...|++..+ ++. .++..+...|...|++++|+..+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1235688889999999999999999987762 222 47888999999999999999999998762 3324
Q ss_pred -CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCCchHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHH
Q 037404 411 -DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILPQVEHYGCMIDLLGRSGR---LKEALRLVQSMPVEPN-AII 482 (605)
Q Consensus 411 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~ 482 (605)
...++..+..++...|++++|...+++..... +.+.....+..+...+...|+ +++|+.++++.+..|+ ...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35678889999999999999999999887621 122223346778888999999 9999999999865444 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
+..++..|...|++++|...++++.+...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999998743
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-12 Score=131.45 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=142.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
+..+|+.+...|.+.|++++|+..|++..+. .| +..++..+..+|.+.|++++|+..|+++.+. .+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4567888888888899999999999988875 45 4678888889999999999999999998872 33457789999
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.+|...|++++|++.|+++ .+.| +...+..++.++...|++++|+..|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 4445 477899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 037404 533 VANVRLQMKKT 543 (605)
Q Consensus 533 A~~~~~~~~~~ 543 (605)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988763
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-12 Score=107.85 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=103.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (605)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 334444444455555555554444321 223444555555555555555555555555541 23345556666666666
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 037404 461 SGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 461 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
.|++++|.+.++++ ..+.+...+..++..+...|++++|...++++.+..|.++..+..++.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666665 1234566777777888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCC
Q 037404 539 QMKKTR 544 (605)
Q Consensus 539 ~~~~~~ 544 (605)
++.+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=123.26 Aligned_cols=234 Identities=9% Similarity=-0.023 Sum_probs=141.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CC----hhH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEA----GLKP-DDGTLISILAACAESGLLGLGMKVHASINKYRFK-CN----TNV 348 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 348 (605)
+..+...+...|++++|...+++..+. +..| ....+..+...+...|+++.|...+....+.... ++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444445555554444443321 1011 1223344444555555555555555544322100 01 224
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCChHHHHHH
Q 037404 349 CNALVDMYAKCGS--------------------LDNAMSVFNGMTK-----K----DLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 349 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+..+...|...|+ +++|...+++... . ....+..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5555566666666 6666666554321 1 124667777788888888888888
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHH
Q 037404 400 FSRMKDEGF-GPD----KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 400 ~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..++..+...|++++|.+.
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 887764210 111 236777788888999999999999887652211111 55677888899999999999999
Q ss_pred HHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 471 VQSM-PV---EPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 471 ~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
++++ .. .++ ..++..+...+...|++++|...++++.++.+.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8876 11 111 346778889999999999999999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-13 Score=126.38 Aligned_cols=234 Identities=12% Similarity=0.071 Sum_probs=121.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc------CC-CC
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEA-------GLKPDDGTLISILAACAESGLLGLGMKVHASINKY------RF-KC 344 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~ 344 (605)
+..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+.+. +. +.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 667777788888888888888877652 11222344555556666666666666666655432 11 11
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE------GFGP-DKYTFVG 417 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ 417 (605)
... ++..+...|...|++++|...++++.+. +-.| ....+..
T Consensus 110 ~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 110 VAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 123 3444444444555555555555444432 1112 1234455
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhh-----CCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC--
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDY-----GILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-P---------VEPN-- 479 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-- 479 (605)
+...+...|++++|..+++++.... +..| ....+..++..|...|++++|.+.++++ . ..+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 5555666666666666666555410 1111 2344555666666666666666666554 1 0111
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 480 -----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 480 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222233344556666666777777767777778888888888888888888888887663
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-10 Score=110.88 Aligned_cols=261 Identities=14% Similarity=-0.021 Sum_probs=168.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CC----hhHHHHHH
Q 037404 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDG----TLISILAACAESGLLGLGMKVHASINKYRFK-CN----TNVCNALV 353 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~ 353 (605)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+.+....... .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455667777777766666543111221 2344445566667777777766665432111 11 12345566
Q ss_pred HHHHhcCChHHHHHHHhcCCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 037404 354 DMYAKCGSLDNAMSVFNGMTK----------K-DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG--P--DKYTFVGV 418 (605)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~l 418 (605)
..+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777778888888777765541 1 1234556777788888888888888887753211 1 23456777
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH-----HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-----CMIDLLGRSGRLKEALRLVQSM-PVEPN-----AIIWGTLL 487 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~ 487 (605)
...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888889999999999988865322211111111 2334577889999999999887 22221 23456777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+...|++++|...++++....+.. ..++..++.++...|+.++|...+++....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88888999999999999988764321 136677888899999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-11 Score=113.03 Aligned_cols=213 Identities=9% Similarity=0.005 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhcCCC----CChhHHHHHHHHHHH
Q 037404 328 GLGMKVHASINKYRFKCNTNVCNALVDMYA-------KCGSL-------DNAMSVFNGMTK----KDLVSWNAMLYGLAM 389 (605)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 389 (605)
+.|...|+++.... +.++..|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887754 446778888887776 35886 899999997653 355789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh-hcCCHHH
Q 037404 390 HGQGEKALGLFSRMKDEGFGPD-KY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG-RSGRLKE 466 (605)
Q Consensus 390 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 466 (605)
.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|+++.+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 788888999999999999999999987 23445556655444432 3799999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCC-CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 467 ALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL---KGS-DPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 467 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
|.++|+++ .. +.+...|..++..+.+.|++++|+.+|+++++. .|+ ...+|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 22 345778999999999999999999999999996 343 5668889999999999999999999999
Q ss_pred HhCCC
Q 037404 541 KKTRA 545 (605)
Q Consensus 541 ~~~~~ 545 (605)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 98654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-09 Score=112.73 Aligned_cols=427 Identities=11% Similarity=0.030 Sum_probs=271.5
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCC---hHHHH
Q 037404 96 NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG---VSLAK 172 (605)
Q Consensus 96 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~~~a~ 172 (605)
..+.+..|++.+..+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.+ + .+.+.
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~--~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKM--EELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC----CCCHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhC--CcchHHHHH
Confidence 444555566666553 348888999999888888999999999999886 3556677888888888888 7 89999
Q ss_pred HHHhccCC-----CCeehHHHHHHHHHhCCCh--------hHHHHHHhhc-----C-CCC-cchHHHHHHHHHc------
Q 037404 173 KLFMSMGE-----RDIVSWNSMIAGLVKGGEL--------SEARRLFDEM-----P-ERD-AVSWNTILDGYAK------ 226 (605)
Q Consensus 173 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~-----~-~~~-~~~~~~ll~~~~~------ 226 (605)
.+|++... +++..|...+....+.++. +...++|+.. . .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99987653 5666777777666555543 2233555543 1 232 2344444443322
Q ss_pred ---CCChHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 037404 227 ---AGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299 (605)
Q Consensus 227 ---~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (605)
.++.+.+..+|+.+..-.. .+|......--..+. ..+.+++.+ ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHH
Confidence 2234556666666553111 122111111000000 001111100 011233444444
Q ss_pred HHHHHc--CCC---------------C-----CH---HHHHHHHHHHHccC-------chHHHHHHHHHHHHcCCCCChh
Q 037404 300 DQMEEA--GLK---------------P-----DD---GTLISILAACAESG-------LLGLGMKVHASINKYRFKCNTN 347 (605)
Q Consensus 300 ~~m~~~--~~~---------------p-----~~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 347 (605)
.++... ++. | +. ..|...+.---..+ ..+.+..+|+++.... +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 443211 110 1 00 12333332222221 1234556788777653 44778
Q ss_pred HHHHHHHHHHhcCChHHHH-HHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC---
Q 037404 348 VCNALVDMYAKCGSLDNAM-SVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---------GPD--- 411 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---------~p~--- 411 (605)
+|...+..+...|+.++|. .+|++.. +.+...|...+....+.|++++|..+|+++.+... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888999999996 9998765 44666788888889999999999999999886410 132
Q ss_pred ---------HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc-CCHHHHHHHHHhC--CCCCC
Q 037404 412 ---------KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS-GRLKEALRLVQSM--PVEPN 479 (605)
Q Consensus 412 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~ 479 (605)
...|...+....+.|..+.|..+|..+.+.. .......|...+..-.+. ++.+.|.++|+.. ..+.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 2357777777788899999999999998730 122334454444444444 4599999999987 33345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS---DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
...|...+......|+.+.|+.+|++++...|+ ...+|..++..-.+.|+.+.+.++.+++.+.-+.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 667778888888899999999999999998773 4467888888888999999999999999986543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-11 Score=107.43 Aligned_cols=206 Identities=9% Similarity=0.015 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHH
Q 037404 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLY 385 (605)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~ 385 (605)
.|...+......+...|++++|...|..+.+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888889999999999999999999988764677788789999999999999999999876 335678899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc---hHHHHHHH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEGFGPDK-------YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ---VEHYGCMI 455 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 455 (605)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..++++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999999853 2234 4577778889999999999999999976 3454 66788888
Q ss_pred HHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
..|...|+. .++++ . ...+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766643 23332 1 122344443333 334577999999999999999999988887776643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-11 Score=101.50 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 422 (605)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998873 366788889999999999999999999998863 44677888889999
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|...++++.. ..+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987 34557788899999999999999999999987 2 2345778899999999999999999
Q ss_pred HHHHHHHhhcCCCCch
Q 037404 501 EVLDCLIRLKGSDPGN 516 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~ 516 (605)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998887643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-12 Score=120.24 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=146.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc------CC
Q 037404 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPA--------KTL---VPWTIIISGYAEKGMAKEAARLYDQMEEA------GL 307 (605)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~ 307 (605)
..++..+...|...|++++|..+|+++.+ .+. ..+..+...+...|++++|...+++..+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999998764 222 22788899999999999999999999864 22
Q ss_pred CC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcC------C-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhH
Q 037404 308 KP-DDGTLISILAACAESGLLGLGMKVHASINKYR------F-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379 (605)
Q Consensus 308 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 379 (605)
.| ....+..+...+...|++++|...++.+.+.. . +.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------------------- 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN---------------------------- 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH----------------------------
Confidence 23 34567788888999999999999988876531 1 111223334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh------CCCC
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDE------GFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDY------GILP 446 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~ 446 (605)
+...|...|++++|+..++++.+. +-.|. ..++..+..++...|++++|...++++.... ...+
T Consensus 159 ---la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 159 ---LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ---HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444445555555555555554432 11221 2345556666666677777766666665410 0111
Q ss_pred c-------hHHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 447 Q-------VEHYGCMIDLLGRSGRLKEALRLVQSMP-VEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 447 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
. ...+..+...+...+.+.+|...++... ..| +..++..++.+|...|++++|...+++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122223333444555556666666652 233 3557888999999999999999999999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-11 Score=120.39 Aligned_cols=179 Identities=8% Similarity=-0.012 Sum_probs=156.4
Q ss_pred hHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 362 LDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQG-EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 362 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
++++...++... +.+...+..+...|...|++ ++|+..|++..+.. +-+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566665443 34678899999999999999 99999999999863 33578899999999999999999999999
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHHH
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRS---------GRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH--------NAVEL 498 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~~ 498 (605)
+.+ ..|+...+..+...|... |++++|.+.++++ ...| +...|..++.++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 976 457788999999999999 9999999999988 3334 577899999999998 99999
Q ss_pred HHHHHHHHHhhcC---CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 499 AEEVLDCLIRLKG---SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 499 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
|+..++++++.+| .++.++..++.+|...|++++|++.++++.+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999999864
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-11 Score=115.66 Aligned_cols=222 Identities=8% Similarity=-0.035 Sum_probs=137.3
Q ss_pred HHHccCchHHHHHHHHHHHHcCC--C---CChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----C-----ChhHHHHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRF--K---CNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----K-----DLVSWNAML 384 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 384 (605)
.+...|+++.|...++.+.+... . ....++..+...|...|+++.|...+++... + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455666666666665543211 0 1134455666666777777666666654431 1 124566677
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHh---hCCCCchHHHHHHHH
Q 037404 385 YGLAMHGQGEKALGLFSRMKDE----GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERD---YGILPQVEHYGCMID 456 (605)
Q Consensus 385 ~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~ 456 (605)
..|...|++++|+..+++..+. +-.+ ...++..+..+|...|++++|...+++...- .+.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7777788888888777776542 1111 1235666777788888888888888777651 122333566777888
Q ss_pred HhhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 457 LLGRSGRLKEALRLVQSM----PV--EPN-AIIWGTLLGACRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
.+.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +.+|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888765 11 122 2344555555666677 66666666652 1123344567778888888
Q ss_pred cCChHHHHHHHHHHHh
Q 037404 527 TGDWNKVANVRLQMKK 542 (605)
Q Consensus 527 ~g~~~~A~~~~~~~~~ 542 (605)
.|++++|...++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-10 Score=110.15 Aligned_cols=227 Identities=10% Similarity=0.016 Sum_probs=161.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----C-CChhHHH
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGL-KPD----DGTLISILAACAESGLLGLGMKVHASINKYRF-----K-CNTNVCN 350 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 350 (605)
....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445567777777777777664310 122 23455666677777777777777776654211 1 1234567
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 037404 351 ALVDMYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKD-----EGFGPDKYTFV 416 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 416 (605)
.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 778888888888888888876542 12 24677788889999999999999998876 32 22356788
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCC---CCchHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGI---LPQVEHYGCMIDLLGRSGR---LKEALRLVQSMPVEPN-AIIWGTLLGA 489 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 489 (605)
.+..++.+.|++++|...+++......- +.....+..+...+...|+ +.+|+..+++.+..|+ ...+..++..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999998873222 2224456677777888888 9999999998754444 3466778899
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q 037404 490 CRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~ 509 (605)
|...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=7e-10 Score=108.16 Aligned_cols=284 Identities=11% Similarity=0.022 Sum_probs=173.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CC-cc----cHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH----HHHHHHH
Q 037404 252 VWGYSKDGDMEMAKLLFDRMPA---KT-LV----PWTIIISGYAEKGMAKEAARLYDQMEEAGL-KPDD----GTLISIL 318 (605)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~~---~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll 318 (605)
...+...|++++|...+++... .+ .. .++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455666666555544321 11 11 134455566666777777777766654210 1111 2234555
Q ss_pred HHHHccCchHHHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C------ChhHHHHH
Q 037404 319 AACAESGLLGLGMKVHASINKY----RFK--C-NTNVCNALVDMYAKCGSLDNAMSVFNGMTK--K------DLVSWNAM 383 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l 383 (605)
..+...|+++.|...++...+. +.. | ....+..+...+...|++++|...+++... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6667777777777777766532 211 1 234455677778888888888888875431 1 12456777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhcccCCHHHHHHHHHHhHHhhCCCC---chHHHHHH
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPD--KYTFV----GVLCACTHAGFIDKGVQYFYSMERDYGILP---QVEHYGCM 454 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l 454 (605)
...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++..... ...+ ....+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHH
Confidence 7888889999999999988765321211 11111 2334477899999999999888652 2111 12356678
Q ss_pred HHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 455 IDLLGRSGRLKEALRLVQSM-------PVEPNA-IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++.+..+... ....+..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~ 334 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVI 334 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHH
Confidence 88899999999999998876 111222 2566677888899999999999999998754311 1123334
Q ss_pred cCChHHHHHHHHHHHhC
Q 037404 527 TGDWNKVANVRLQMKKT 543 (605)
Q Consensus 527 ~g~~~~A~~~~~~~~~~ 543 (605)
.| +....+++.+...
T Consensus 335 ~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 335 EG--EAMAQQLRQLIQL 349 (373)
T ss_dssp TH--HHHHHHHHHHHHT
T ss_pred cc--HHHHHHHHHHHhC
Confidence 44 5566666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=100.02 Aligned_cols=206 Identities=8% Similarity=-0.012 Sum_probs=125.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTK--K-D---LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-GPD-KYTFV 416 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~ 416 (605)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566666666666666666665542 1 2 34555566666666666666666666665421 111 23444
Q ss_pred HHHHHhcc--------cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037404 417 GVLCACTH--------AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488 (605)
Q Consensus 417 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 488 (605)
.+..++.. .|++++|...|+++... .+.+......+.......+.. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 66666666666666552 111222222211111000000 112356788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCCceeEEE
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAAT----------GDWNKVANVRLQMKKTRAQKPSGASSVE 555 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 555 (605)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|+..++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 89999999999999999999999854 5788999999877 899999999999998532
Q ss_pred eCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhc
Q 037404 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590 (605)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (605)
.+|........+..+...+.+.
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2445556666666665555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=108.12 Aligned_cols=188 Identities=9% Similarity=-0.077 Sum_probs=124.0
Q ss_pred HHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---GPD--KYTFVGVLC 420 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~ 420 (605)
.|...|++++|...|.+... .+ ..+|+.+...|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666665554431 01 34666777777777788888777777654210 111 246777888
Q ss_pred Hhccc-CCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHH
Q 037404 421 ACTHA-GFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN---A-----IIWGTL 486 (605)
Q Consensus 421 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l 486 (605)
+|... |++++|+..|+++.+-..-..+ ..++..++..+.+.|++++|+..|++. ...|+ . ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999988762111111 356788899999999999999999887 22222 1 256777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCch-----HHHHHHHHH--hcCChHHHHHHHHHHHh
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGN-----YTMLSNIFA--ATGDWNKVANVRLQMKK 542 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 542 (605)
+.++...|++++|+..++++++++|..+.. +..++..+. ..+++++|+..++++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 888889999999999999999988876543 344556664 45678888888765544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-10 Score=105.88 Aligned_cols=222 Identities=12% Similarity=0.081 Sum_probs=147.0
Q ss_pred HccCchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----ChhHHHHH
Q 037404 322 AESGLLGLGMKVHASINKY-------RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------K----DLVSWNAM 383 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 383 (605)
...|+++.|...+++..+. ..+....++..+...|...|++++|...++++.. + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888887776542 2223456778888889999999999888876541 1 23577788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh-----C-CCCchHH
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDE------GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY-----G-ILPQVEH 450 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~ 450 (605)
...|...|++++|...+++..+. .-.| ...++..+...+...|++++|...++++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999999988887763 1123 24567778888888899999998888887620 1 2223567
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhcC------CHHHHHHHHHHHHhhcCCC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-P---------VEPNA-IIWGTLLGACRKHN------AVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 513 (605)
+..++..|...|++++|.++++++ . ..+.. ..+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778888888889988888888766 1 12222 23333333333222 2333333333322233455
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 514 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+.++..++.+|...|++++|..+++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667899999999999999999999998864
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-09 Score=95.89 Aligned_cols=174 Identities=9% Similarity=0.019 Sum_probs=110.5
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 365 AMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 365 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
|+..|++.. .++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555565544 234445556667777777777777777776654421 2445666677777777888888887777755
Q ss_pred hhCCCC-----chHHHHHHHHH--hhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 037404 441 DYGILP-----QVEHYGCMIDL--LGRSG--RLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL- 509 (605)
Q Consensus 441 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 509 (605)
..| +..+...++.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 23444444444 33333 777888888777 33455233333344677778888888888776665
Q ss_pred ---------cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 ---------KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 37777777777766666776 777777777774
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-10 Score=117.99 Aligned_cols=163 Identities=11% Similarity=0.118 Sum_probs=136.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLC 420 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 420 (605)
+...++.|..+|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+..|++..+. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45678888888888888888888888765 446778888999999999999999999998885 45 4678888999
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 498 (605)
++...|++++|++.|+++.+. .+-+...+..++..|...|++++|++.|+++ .+.|+ ...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998872 3445778999999999999999999999987 44554 6788899999999999999
Q ss_pred HHHHHHHHHhhcC
Q 037404 499 AEEVLDCLIRLKG 511 (605)
Q Consensus 499 A~~~~~~~~~~~p 511 (605)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999988643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=9.8e-10 Score=89.20 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=86.3
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRK 492 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 492 (605)
+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555566666655555541 2234455555666666666666666666655 1 22345567777777888
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|++++|...++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888887643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-09 Score=95.99 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHH
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTK--KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK----YTF 415 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~ 415 (605)
...+..+...+...|++++|...|+++.. |+ ...+..+..+|...|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34455556667777777777777776652 21 1356666677777777777777777776642 321 133
Q ss_pred HHHHHHhcc------------------cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 037404 416 VGVLCACTH------------------AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477 (605)
Q Consensus 416 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (605)
..+..++.. .|++++|...|+++.+ ..+-+...+..........+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~------------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRL------------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHH-------------
Confidence 333333332 3445555555555544 1111222211111000000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
......++..+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++++...++.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456778899999999999999999999886 57999999999999999999999999887553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-10 Score=101.84 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=147.7
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---hhHH
Q 037404 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN--TNVCNALVDMYAKCGSLDNAMSVFNGMTK--K-D---LVSW 380 (605)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~ 380 (605)
.+...+......+.+.|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|++... | + ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777888889999999999999999988653211 56788899999999999999999998763 2 2 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 381 NAMLYGLAM--------HGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 381 ~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
..+..++.. .|++++|+..|+++.+. .|+. ..... ...+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999985 3432 22211 1111111110 11235
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcCCCCch
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKH----------NAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
..++..|.+.|++++|...|+++ ...|+ ...+..++.++... |++++|...++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 66788889999999999999887 22233 45677777888766 89999999999999999998743
Q ss_pred ---HHHHHHHHHhcCChHHH
Q 037404 517 ---YTMLSNIFAATGDWNKV 533 (605)
Q Consensus 517 ---~~~l~~~~~~~g~~~~A 533 (605)
...+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-10 Score=102.99 Aligned_cols=218 Identities=11% Similarity=-0.005 Sum_probs=126.3
Q ss_pred CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA----GLKPD-DGTLISILAACAESGLLGLGMKVH 334 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 334 (605)
++++|...|++ ....|...|++++|...|.+..+. |.+++ ..++..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36666666555 255666667777777666665442 11111 234444455555555555555554
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC-
Q 037404 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH-GQGEKALGLFSRMKDEGFG-PD- 411 (605)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~-p~- 411 (605)
+...+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 444321 1111222111 23566677777775 8888888888877653100 01
Q ss_pred ---HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCch-----HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-
Q 037404 412 ---KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV-----EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAI- 481 (605)
Q Consensus 412 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 481 (605)
..++..+...+...|++++|+..|+++.....-.+.. ..+..++.++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2457777888888888888888888887621111111 15677778888888999998888887 4444422
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhhcCCCC
Q 037404 482 -----IWGTLLGACR--KHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 482 -----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.+..++.++. ..+++++|+..|+++.+++|...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2344555554 34678888888877777666543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-09 Score=95.02 Aligned_cols=180 Identities=10% Similarity=0.058 Sum_probs=129.4
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----KDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
+...+++....+ .++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555444 34455556778888888899999888887643 244677778889999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--hcccC--CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 405 DEGFGP-----DKYTFVGVLCA--CTHAG--FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 405 ~~g~~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
+. .| +..+...+..+ ....| ++.+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 56 35666666655 33334 899999999998652 344333334444888999999999998765
Q ss_pred CC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchH
Q 037404 475 PV-----------EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 475 ~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
.. +.|+.++..++......|+ +|.+++.++.+..|++|.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 3356677566666666787 89999999999999998543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-09 Score=100.26 Aligned_cols=177 Identities=10% Similarity=-0.049 Sum_probs=142.3
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
.+.....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444555555555566777788888999999999999999998853 335678888899999999999999999998662
Q ss_pred hCCCCchHHH-HHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--Cch
Q 037404 442 YGILPQVEHY-GCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGN 516 (605)
Q Consensus 442 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 516 (605)
.|+.... ......+...++.++|.+.+++. .. +.+...+..+...+...|++++|+..+.++++.+|.+ +.+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3444333 23334466778888888888877 33 3457789999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 517 YTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 517 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+..++.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-11 Score=97.37 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=94.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (605)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++.+ -.+-+...|..++.+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 344456666666666665432 232 23445566677777777777777777766 2334566777777777777888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 465 KEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEE-VLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
++|...|+++ .+.| +...+..++..+.+.|++++|.+ +++++++++|.++.++...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8887777776 3344 46677778888888888776554 4578888888888888888888877775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-08 Score=90.25 Aligned_cols=171 Identities=11% Similarity=-0.102 Sum_probs=137.0
Q ss_pred HHHHHhcCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHhH
Q 037404 365 AMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG----FIDKGVQYFYSME 439 (605)
Q Consensus 365 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 439 (605)
|.+.|++.. ..++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 3466777777888888889999999999888865 56677777777777 6 8999999999987
Q ss_pred HhhCCCCchHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 037404 440 RDYGILPQVEHYGCMIDLLGR----SGRLKEALRLVQSM-PVEPN---AIIWGTLLGACRK----HNAVELAEEVLDCLI 507 (605)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 507 (605)
+ . -+...+..|...|.. .+++++|.++|++. ...|+ +..+..|...|.. .+++++|...++++.
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2 356677888888877 88999999999988 44443 7788889999988 789999999999999
Q ss_pred hhcCCCCchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 037404 508 RLKGSDPGNYTMLSNIFAAT-G-----DWNKVANVRLQMKKTR 544 (605)
Q Consensus 508 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 544 (605)
+. |.++..+..|+.+|... | ++++|..++++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 87 77788999999999765 4 8999999999999865
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=118.05 Aligned_cols=169 Identities=10% Similarity=-0.070 Sum_probs=95.9
Q ss_pred HhcCChHHHHHHHhcCC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 357 AKCGSLDNAMSVFNGMT-----------KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
...|++++|++.+++.. +.+...+..+...|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44566666666665543 2344555556666666666666666666665532 22445555555666666
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
|++++|...|+++.+. .+.+...+..+..+|.+.|++++ .+.|+++ ...| +...+..+..++.+.|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666551 22344555666666666666666 6666555 2222 3445666666666666666666666
Q ss_pred HHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 504 DCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
+++++.+|.++.++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666666666666666666655444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.8e-09 Score=84.51 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (605)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888899999999999888753 345677778888888899999999999998772 344667788889999
Q ss_pred hhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 459 GRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++.+..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999887 2 23457788888999999999999999999999888753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-09 Score=99.10 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C--
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKY------RF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------K-- 375 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 375 (605)
.++..+...+...|++++|...+..+.+. +- +....++..+...|...|++++|...|++... +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44555566666666666666666665533 11 12344566677777777777777777765541 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh----
Q 037404 376 --DLVSWNAMLYGLAMHGQGEKALGLFSRMKDE------GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY---- 442 (605)
Q Consensus 376 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---- 442 (605)
...++..+...|...|++++|...+++..+. +-.| ...++..+..++...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2356777778888888888888888887764 1123 23567788888999999999999998887621
Q ss_pred --CCCC-chHHHHHHHHHhhhc------CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 443 --GILP-QVEHYGCMIDLLGRS------GRLKEALRLVQSMP-VEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 443 --~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
...+ ....+..+...+... ..+.++...++... ..|+ ..++..++..+...|++++|..+++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 223333333333332 23555555555553 2233 457888899999999999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.5e-10 Score=92.69 Aligned_cols=123 Identities=7% Similarity=-0.060 Sum_probs=103.1
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHN 494 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 494 (605)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44567778899999999988754 233 3556678899999999999999999998 4444 5779999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV-RLQMKKT 543 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 543 (605)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887665 6888874
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-09 Score=109.24 Aligned_cols=160 Identities=10% Similarity=0.013 Sum_probs=125.3
Q ss_pred cCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 037404 359 CGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
.|++++|.+.|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998763 456789999999999999999999999998853 335678888999999999999999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhc
Q 037404 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH---NAVELAEEVLDCLIRLK 510 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 510 (605)
+++.+. .+.+...+..++..|.+.|++++|.+.++++ ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999883 3456788999999999999999999999987 3334 577888899999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 037404 511 GSDPGNYTMLS 521 (605)
Q Consensus 511 p~~~~~~~~l~ 521 (605)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988888776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-09 Score=91.59 Aligned_cols=130 Identities=7% Similarity=-0.100 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (605)
..+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ -.+.+...+..++..|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 347888999999999999999998853 33567888889999999999999999999987 334467788888888876
Q ss_pred cCC--HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 461 SGR--LKEALRLVQSMP-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 461 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
.|. .+.+...++... ..|....+.....++...|++++|+..|+++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666676663 22223344556667778899999999999999999873
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=90.99 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=94.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-hhhc
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL-LGRS 461 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 461 (605)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+... .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344444555555555554444321 113344444455555555555555555554431 1122222111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--CchHHHHHHHHHhcCChHHHHHHH
Q 037404 462 GRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 462 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
+...+|.+.+++. ...| +...+..+..++...|++++|+..++++++.+|.. +..+..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222356666655 3334 57788889999999999999999999999999875 558999999999999999999999
Q ss_pred HHHHh
Q 037404 538 LQMKK 542 (605)
Q Consensus 538 ~~~~~ 542 (605)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-09 Score=88.39 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=90.3
Q ss_pred CCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 444 ILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 444 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
+.| +...+..++..+.+.|++++|.+.|+++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 4567788889999999999999999988 3344 577999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 037404 521 SNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 521 ~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+.+|...|++++|+..++++.+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999854
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=88.82 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=87.7
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..++..+.+.|++++|...|+++ .. +.+...|..+..++...|++++|+..++++++.+|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4567778888999999999999999987 33 346778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037404 525 AATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|+..+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999998853
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.7e-09 Score=97.16 Aligned_cols=218 Identities=12% Similarity=0.001 Sum_probs=143.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 037404 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE-SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367 (605)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 367 (605)
.|++++|.+++++..+.. +. .+.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777766532 11 1222 45666666665543 456778888888888
Q ss_pred HHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhcccCCHHHHHH
Q 037404 368 VFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---GPD--KYTFVGVLCACTHAGFIDKGVQ 433 (605)
Q Consensus 368 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~ 433 (605)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876542 11 34777788888888999999988888665311 222 2456777777877 88999988
Q ss_pred HHHHhHHhhCCC---C-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 037404 434 YFYSMERDYGIL---P-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV---EPN----AIIWGTLLGACRKHNAVELAEE 501 (605)
Q Consensus 434 ~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~ 501 (605)
.|+++..-..-. + ...++..+...|.+.|++++|++.|++. .+ .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877621111 1 1456777888888888888888888876 11 111 2255566667777788888888
Q ss_pred HHHHHHhhcCCCCch-----HHHHHHHHHhcCChHHHHH
Q 037404 502 VLDCLIRLKGSDPGN-----YTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 502 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 535 (605)
.+++++ ..|..... +..++..+ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888888 88877664 23344444 5667665555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-08 Score=80.87 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
..+...+..|.+.|++++|++.|++. ... .+...|..++.++.+.|++++|+..++++++++|.++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45566677777777777777777776 222 3466777777777777888888888888887777777777788888888
Q ss_pred cCChHHHHHHHHHHHhC
Q 037404 527 TGDWNKVANVRLQMKKT 543 (605)
Q Consensus 527 ~g~~~~A~~~~~~~~~~ 543 (605)
.|++++|++.+++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88888888888777763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-08 Score=95.47 Aligned_cols=220 Identities=10% Similarity=-0.025 Sum_probs=134.8
Q ss_pred cCCHHHHHHHHhhCCCCCcccHHHHHHHHHh-CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAE-KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (605)
.|++++|.+++++..+.... .+.. .++++.|...|.+. ...|...|++++|...+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 46677777777664321111 1222 56777777777654 3456677888888887777
Q ss_pred HHHcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHH
Q 037404 337 INKYRFK-----CNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 337 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
..+.... .-..+++.+..+|...|++++|...|++... .+ ..++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 6543211 1134677777888888888888887775441 11 2466677777777 888888888888
Q ss_pred HHHCCCCC-C----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCCc-hHHHHHHHHHhhhcCCHHHHHHHHHh
Q 037404 403 MKDEGFGP-D----KYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILPQ-VEHYGCMIDLLGRSGRLKEALRLVQS 473 (605)
Q Consensus 403 m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (605)
..+..... + ..++..+...+...|++++|+..|+++.... +..+. ...+..++..+...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77632111 1 3456777778888888888888888776521 11111 22556666777777888888888877
Q ss_pred CCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 037404 474 MPVEPN------AIIWGTLLGACRKHNAVELAEE 501 (605)
Q Consensus 474 ~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 501 (605)
.-..|+ ...+..++.++ ..|+.+.+..
T Consensus 221 al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 533332 12233444444 4566655555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-08 Score=103.43 Aligned_cols=190 Identities=10% Similarity=-0.004 Sum_probs=145.2
Q ss_pred HccCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHc
Q 037404 322 AESGLLGLGMKVHASIN--------KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMH 390 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 390 (605)
...|++++|.+.++.+. +.. +.+...+..+..++...|++++|...|+++. +.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888899998888887 332 3456778888999999999999999998776 45778899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
|++++|+..|++..+. .| +...+..+..++...|++++ .+.|+++.+ -.+.+...+..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 44 55778888889999999999 999999987 234467789999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhcCCCCchH
Q 037404 470 LVQSM-PVEPN-AIIWGTLLGACRKHNA-----VELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 470 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
.|+++ ...|+ ...+..+..++...++ .+...+..+...+..+.++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 56676 4577777777766555 2333333444444444555433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=81.44 Aligned_cols=115 Identities=8% Similarity=-0.030 Sum_probs=95.5
Q ss_pred CCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 037404 408 FGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWG 484 (605)
Q Consensus 408 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 484 (605)
+.|+. ..+......|.+.|++++|++.|+++.+ -.+.+...|..++.+|.+.|++++|++.+++. .+. .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 4566777788889999999999998877 34556788888999999999999999999887 333 4577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
.++.++...|++++|++.|+++++++|+++.++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999888887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=103.17 Aligned_cols=146 Identities=9% Similarity=-0.091 Sum_probs=71.4
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFS 401 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 401 (605)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++.. +.+...|..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555666665555433 2234555556666666666666666665443 2234555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 037404 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS---GRLKEALRLVQSM 474 (605)
Q Consensus 402 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 474 (605)
+..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 655532 223445555555666666666666666665551 223345555556666665 6666666666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-07 Score=87.00 Aligned_cols=161 Identities=7% Similarity=-0.085 Sum_probs=123.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHH
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGF-GPDKY----TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYG 452 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 452 (605)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887421 22221 2334666778888999999999999872122223 33688
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchH
Q 037404 453 CMIDLLGRSGRLKEALRLVQSMP-----V---EPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNY 517 (605)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 517 (605)
.++..|...|++++|..+++++- . .+. ..++..++..|.+.|++++|...++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999988761 1 122 2377889999999999999999999999875332 5679
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 037404 518 TMLSNIFAATGD-WNKVANVRLQMKK 542 (605)
Q Consensus 518 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 542 (605)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999999875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-08 Score=87.24 Aligned_cols=128 Identities=15% Similarity=-0.011 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++... .+.+...+..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 344455555666666666666544 2445555666666666666666666666666551 2334455555556666
Q ss_pred hcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 460 RSGRLKEALRLVQSM-PVEP-N----------------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
..|++++|.+.|+++ ...| + ...+..++.++...|++++|...++++++..|.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 666666666655554 1111 1 1445555555555666666666666666555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.5e-08 Score=90.51 Aligned_cols=164 Identities=6% Similarity=-0.103 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCC--CCc--hH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-----YTFVGVLCACTHAGFIDKGVQYFYSMERDYGI--LPQ--VE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 449 (605)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788899999999999888775322111 12334556678889999999999988752111 111 45
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--C----C
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM----PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--D----P 514 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~ 514 (605)
+++.++..|...|++++|...++++ ...|+ ..++..++..|...|++++|...++++++..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999876 11122 257888999999999999999999999987432 1 4
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 037404 515 GNYTMLSNIFAATGDWNKV-ANVRLQMKK 542 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 542 (605)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 888888875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=87.69 Aligned_cols=156 Identities=14% Similarity=0.024 Sum_probs=115.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVG----------------VLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...++++.+ -.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCC
Confidence 344556677777777777776663 343 334444 78889999999999999999988 344
Q ss_pred CchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNA--VELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
.+...+..++..|...|++++|.+.|+++ ...| +...+..++.++...|+ .+.+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 56888999999999999999999999998 4444 56788888888866553 44556666665432221 22466778
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++...|++++|+..++++.+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8889999999999999999985
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-07 Score=84.56 Aligned_cols=228 Identities=10% Similarity=0.030 Sum_probs=123.8
Q ss_pred hCCC-hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 037404 288 EKGM-AKEAARLYDQMEEAGLKPDD-GTLISILAACAESG--LLGLGMKVHASINKYRFKCNTNVCNALVDMY----AKC 359 (605)
Q Consensus 288 ~~~~-~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 359 (605)
+.|. .++|+.++..++.. .|+. ..++.--.++...+ +++++..++..+...+.. +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 4444 45788888888874 4443 34555555566666 777777777777765532 344444333333 333
Q ss_pred ---CChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC----
Q 037404 360 ---GSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGE--KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF---- 427 (605)
Q Consensus 360 ---g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 427 (605)
+++++++.+++++. +++..+|+.-...+...|.++ ++++.++++.+.. .-|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 56666666666554 345555655555555666665 6666666666643 2244455544444444444
Q ss_pred --HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 037404 428 --IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE-ALRLVQSM-PV----EPNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 428 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A 499 (605)
++++++.+..++. ..+-|...|+.+...+.+.|+..+ +..+..+. .. ..+...+..++.++.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 5556666655555 234455555555555555555333 33344443 11 22444555555555555666666
Q ss_pred HHHHHHHHh-hcCCCCchHHHHH
Q 037404 500 EEVLDCLIR-LKGSDPGNYTMLS 521 (605)
Q Consensus 500 ~~~~~~~~~-~~p~~~~~~~~l~ 521 (605)
.++++.+.+ .+|.....|...+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHH
Confidence 666666554 4555555444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-08 Score=82.26 Aligned_cols=127 Identities=7% Similarity=-0.037 Sum_probs=100.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACR 491 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 491 (605)
.+..+...+...|++++|...++++.. ..+.+...+..++..+...|++++|.+.+++. .. +.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455566667777888888888877766 23445677778888888888888888888876 22 345778888999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI--FAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 542 (605)
..|++++|...++++++..|.++..+..+..+ +...|++++|++.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998887555544 8888999999999988765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-08 Score=84.38 Aligned_cols=157 Identities=13% Similarity=-0.036 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hc
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA-CT 423 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 423 (605)
.+..+...+...|++++|...|++.. +.+...+..+...+...|++++|+..+++.... .|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 34556677788888888888888877 346677888888888888888888888887654 3344332222211 11
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN---AIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A 499 (605)
..+....|...++++.+ ..+.+...+..+...+...|++++|...|+++ ...|+ ...+..++..+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233346788888776 23445788888999999999999999999887 44554 55788888899999999999
Q ss_pred HHHHHHHHh
Q 037404 500 EEVLDCLIR 508 (605)
Q Consensus 500 ~~~~~~~~~ 508 (605)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-08 Score=81.74 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=86.3
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..+...+.+.|++++|...|+++ .. +.+...|..+..++...|++++|+..++++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456667788889999999999999987 33 346778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037404 525 AATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|++.++++.+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998753
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-08 Score=91.85 Aligned_cols=134 Identities=8% Similarity=-0.059 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTL- 486 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l- 486 (605)
+.+...+..+...+...|++++|...|+++.+ ..+.+...+..++..+.+.|++++|...++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 33456677788889999999999999999987 34556788999999999999999999999998 456766543333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...+...++.++|+..++++++.+|+++..+..++.+|...|++++|+..++++.+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3446677888999999999999999999999999999999999999999999999864
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-08 Score=78.11 Aligned_cols=96 Identities=10% Similarity=-0.067 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..++..+.+.|++++|.+.|++. .. +.+...|..++.++...|++++|+..++++++.+|.++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456677788888999999999999887 33 3457788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037404 526 ATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~~~ 543 (605)
..|++++|+..+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999999874
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-06 Score=78.03 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhcCC---CCChhHHHHHHHHH----HHc---CChH
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG--SLDNAMSVFNGMT---KKDLVSWNAMLYGL----AMH---GQGE 394 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~ 394 (605)
.++|...+..+...+.. +..+++.-..++...| ++++++++++.+. +.+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35777888888776533 5566777778888888 9999999999876 44666777665555 555 7899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH--HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC------HHH
Q 037404 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID--KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR------LKE 466 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 466 (605)
+++.+++++.+.. +-|..+|..-..++...|.++ ++++.++++.+ ..+-|...|+.-...+.+.|. +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999999864 346777777777777788887 99999999988 345577788877777777776 899
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhc---CCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 467 ALRLVQSM--PVEPNAIIWGTLLGACRKHNAV-ELAEEVLDCLIRLK---GSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 467 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+++.++++ ..+-|...|+.+...+.+.|+. +.+..++.++.+.+ |.++.++..++.+|.+.|+.++|+++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999887 2345677888888888888774 44666888777765 788889999999999999999999999998
Q ss_pred Hh
Q 037404 541 KK 542 (605)
Q Consensus 541 ~~ 542 (605)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 86
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-08 Score=85.60 Aligned_cols=184 Identities=13% Similarity=0.018 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Chh---HHHH
Q 037404 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKC--NTNVCNALVDMYAKCGSLDNAMSVFNGMTK--K-DLV---SWNA 382 (605)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 382 (605)
...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | +.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455667778899999999999999998765332 235778889999999999999999998762 2 322 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 383 MLYGLAM------------------HGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 383 l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
+..++.. .|++++|+..|+++.+. .|+.. ....... ...+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH-----
Confidence 5555554 57899999999999985 45432 2221111 00111111
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
......++..|.+.|++++|...|+++ ...|+ ...+..++.++.+.|++++|+..++.+....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112245678889999999999999987 33333 246788899999999999999999999988887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=86.17 Aligned_cols=121 Identities=8% Similarity=0.078 Sum_probs=94.0
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCCH--
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGA-CRKHNAV-- 496 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~-~~~~g~~-- 496 (605)
+...|++++|...++.... ..+.+...+..++..|...|++++|...|+++ .. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456777888888887776 23446677888888888888888888888877 22 2356677778887 7788888
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++|+..++++++.+|.++..+..++.++...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999998854
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=5.1e-06 Score=83.26 Aligned_cols=367 Identities=9% Similarity=-0.039 Sum_probs=196.5
Q ss_pred hCC-CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHH
Q 037404 92 QNS-LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170 (605)
Q Consensus 92 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 170 (605)
+.| +++.|..+|+.+... -|. ++.+.+..+|+..+.. .|+...|...+....+.+. ..+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~-~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQ-KKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----C
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCc-hHHH
Confidence 456 478888888888764 233 8899999999998874 4688888888888877762 2344
Q ss_pred HHHHHhccC-----C-CCeehHHHHHHHHH----hCCChhHHHHHHhhcCC-CCcchHHHHHHHHHc---CCChHHHHHH
Q 037404 171 AKKLFMSMG-----E-RDIVSWNSMIAGLV----KGGELSEARRLFDEMPE-RDAVSWNTILDGYAK---AGEMNLAFEL 236 (605)
Q Consensus 171 a~~~~~~~~-----~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~---~~~~~~a~~~ 236 (605)
...+|+... . .+...|...+..+. .+|+.+.+..+|++.+. |. ..+..+-..|.. ......+..+
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHHHHHHhccccHHHH
Confidence 555555432 1 24556776666543 24567778888888733 21 112222222211 1111222222
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcccHHHHHHHHHhCC--C-----hHHHHHHHHHHHHc
Q 037404 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP----AKTLVPWTIIISGYAEKG--M-----AKEAARLYDQMEEA 305 (605)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~ 305 (605)
+.+ .. +.+..|..+++.+. ..+...|...+..-...+ - .+.+..+|++++..
T Consensus 146 ~~~---------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 146 VGD---------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp HHH---------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH---------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 211 00 11222222222111 012223544444322211 0 34566788887775
Q ss_pred CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHhcCC-----------
Q 037404 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA-MSVFNGMT----------- 373 (605)
Q Consensus 306 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~----------- 373 (605)
. +.+...|...+..+.+.|+++.|..++++.... +.+...+.. |....+.++. ..+.+...
T Consensus 209 ~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 209 F-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp T-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------C
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence 3 445666776777777888888888888888877 333333322 2221111111 11111110
Q ss_pred -CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-cCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 374 -KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 374 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
......|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.. +.++..+
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 001234555666666667778888888777 21 11233333322222112 235777888887777743 2234445
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666677777777777777763 2456666666666667777777777777664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.2e-08 Score=77.45 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGA 489 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 489 (605)
...+..+...+...|++++|...++++.. ..+.+...+..++..+...|++++|.+.++++ .. +.+...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555566666666666666666666654 22335566666777777777777777777665 22 2356677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
+...|++++|...++++++..|.++..+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999988888888888888888877664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=8e-08 Score=77.13 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGA 489 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 489 (605)
...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.+++. .. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345566666777778888888888777662 3445667777888888888888888888776 22 3346788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChH
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 531 (605)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998888763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-07 Score=79.91 Aligned_cols=173 Identities=9% Similarity=-0.086 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHG----QGEKALGLFSRMK 404 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 404 (605)
|.+.|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444444433 455566666666666677777666665543 355566666666665 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHhHHhhCCC-CchHHHHHHHHHhhh----cCCHHHHHHHHHhC-
Q 037404 405 DEGFGPDKYTFVGVLCACTH----AGFIDKGVQYFYSMERDYGIL-PQVEHYGCMIDLLGR----SGRLKEALRLVQSM- 474 (605)
Q Consensus 405 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 474 (605)
+.| +...+..+...|.. .+++++|..+|++..+ .+.. .++..+..|...|.. .+++++|.+.|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 754 56667777777776 7888999999988865 1211 126777888888887 78899999999887
Q ss_pred CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhc
Q 037404 475 PVEPNAIIWGTLLGACRKH-N-----AVELAEEVLDCLIRLK 510 (605)
Q Consensus 475 ~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 510 (605)
...++...+..|...|... | ++++|...++++.+..
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3335566777777777653 3 8999999999988864
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=75.32 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGA 489 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 489 (605)
...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|...++++ . .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666677777777777777777662 2345666777777777888888888877776 2 23456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999988988888888888876654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-07 Score=82.52 Aligned_cols=120 Identities=9% Similarity=-0.012 Sum_probs=57.4
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAV 496 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~ 496 (605)
...+...|++++|...++++. .|+...+..++..|.+.|++++|.+.+++. .. +.+...+..++.++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 334444455555555554432 234444455555555555555555555444 11 22334444445555555555
Q ss_pred HHHHHHHHHHHhhcCCCC----------------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 497 ELAEEVLDCLIRLKGSDP----------------GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++|+..++++++..|.+. .++..++.+|...|++++|.+.++++.+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555444444 44455555555555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=93.45 Aligned_cols=191 Identities=10% Similarity=-0.064 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 422 (605)
...+..+...+...|++++|...|++.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455566666777777777777776554 3356677777777777888888888887777642 23456677777778
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQV-EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 501 (605)
...|++++|...|+++.+.. |+. ..+...+....+..+...... .......++......+.. + ..|++++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 88888888888887776521 211 011111111111111111111 222233334444333332 2 3688999999
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 037404 502 VLDCLIRLKGSDPGNYTMLSNIFAAT-GDWNKVANVRLQMKKT 543 (605)
Q Consensus 502 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 543 (605)
.++++.+.+|.+......+...+.+. +++++|.+++.++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998887777777777766 7799999999988764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9.4e-08 Score=91.11 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...|..+..+|.+.|++++|+..++++ .+. .+...+..+..++...|++++|+..|+++++++|.++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 333 457789999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHHh
Q 037404 526 ATGDWNKV-ANVRLQMKK 542 (605)
Q Consensus 526 ~~g~~~~A-~~~~~~~~~ 542 (605)
+.|++++| ...+++|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 556777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.73 E-value=6.2e-07 Score=89.88 Aligned_cols=331 Identities=8% Similarity=-0.017 Sum_probs=159.5
Q ss_pred CChhHHHHHHhhcCC--CCcchHHHHHHHHHcCCC-hHHHHHHHHhCC------CCChhHHHHHHHHHH----hcCCHHH
Q 037404 197 GELSEARRLFDEMPE--RDAVSWNTILDGYAKAGE-MNLAFELFEKIP------HRNIVSWSTMVWGYS----KDGDMEM 263 (605)
Q Consensus 197 g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~------~~~~~~~~~l~~~~~----~~~~~~~ 263 (605)
|+++.+..+|++.+. |+...|..-+....+.++ .+....+|+... ..+...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888888843 666666666665555442 233444555433 234566666666543 2456777
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHh---C--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 037404 264 AKLLFDRMPAKTLVPWTIIISGYAE---K--------------GMAKEAARLYDQMEEAGLKPDDGTLISILAACAES-- 324 (605)
Q Consensus 264 a~~~~~~~~~~~~~~~~~l~~~~~~---~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-- 324 (605)
+.++|++........+..+-..|.. . +.+..|..+++.+...-...+...|...+.--...
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 8888887755222222222222211 1 11222333333332210001122333322222111
Q ss_pred Cc-----hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHHHHHHHHHHcCChHHHH
Q 037404 325 GL-----LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KDLVSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 325 ~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 397 (605)
+- .+.+..+|+++.... +.+..+|...+..+.+.|+.+.|..++++... .+...|. .|+...+.++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~- 261 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV- 261 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH-
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH-
Confidence 00 233455666665543 33455666666666666777777776664432 2222222 12221111111
Q ss_pred HHHHHHHHCC---------CCC---CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-CH
Q 037404 398 GLFSRMKDEG---------FGP---DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG-RL 464 (605)
Q Consensus 398 ~~~~~m~~~g---------~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~ 464 (605)
++.+.+.- ..+ ....|...+....+.+..+.|..+|+.+ .. . ..+...|...+..-...+ +.
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCCh
Confidence 22222110 001 1123444445555566677777777766 31 1 123334433332222223 57
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 465 KEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 465 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.|.++|+.. ..+.++..+...+......|+.+.|+.+++++ +.+...+...+..-...|+.+.+.++++++.+
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777665 12122344455555556667777777777775 23345566666666666777777777776664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.6e-08 Score=74.24 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTMLSN 522 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 522 (605)
+...+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456677788888899999999988877 2 2345778888999999999999999999999999999 9999999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCC
Q 037404 523 IFAAT-GDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 523 ~~~~~-g~~~~A~~~~~~~~~~~~~ 546 (605)
++... |++++|++.++++.+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999987543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=84.55 Aligned_cols=124 Identities=11% Similarity=-0.050 Sum_probs=85.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHh
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA----IIWGTLLGACRK 492 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~ 492 (605)
.+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 345566777888888888877754 2243335556666777888888888888766333322 356667777888
Q ss_pred cCCHHHHHHHHHHHHhhc--CC-CCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 493 HNAVELAEEVLDCLIRLK--GS-DPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888877532 33 3446777888888888888888888888774
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=7.8e-08 Score=76.09 Aligned_cols=95 Identities=15% Similarity=-0.013 Sum_probs=83.9
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
.+..++..+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556777888999999999999988 3334 6778889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 037404 528 GDWNKVANVRLQMKKTR 544 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~~ 544 (605)
|++++|+..++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-06 Score=79.99 Aligned_cols=159 Identities=13% Similarity=0.022 Sum_probs=121.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037404 351 ALVDMYAKCGSLDNAMSVFNGMTKK---DL------VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PD----KYTFV 416 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~ 416 (605)
..+..+...|++++|...+++.... +. ..+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999876532 11 13334666677788999999999999874322 22 23688
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhh----CCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDY----GILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIW 483 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 483 (605)
.+..+|...|++++|...++++.+.. +..+ ...++..++..|.+.|++++|.+.+++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987521 1122 2347888999999999999999999876 12222 5688
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 037404 484 GTLLGACRKHN-AVELAEEVLDCLIRL 509 (605)
Q Consensus 484 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 509 (605)
..++.++...| ++++|...+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999999 579999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.8e-08 Score=80.06 Aligned_cols=109 Identities=9% Similarity=-0.052 Sum_probs=88.2
Q ss_pred CCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037404 409 GPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGT 485 (605)
Q Consensus 409 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 485 (605)
.|+ ...+..+...+...|++++|...|+.+.. ..+.+...|..+..+|...|++++|++.|+++ ...| +...+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 443 34566677788889999999999998877 34457778888999999999999999999887 3333 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
++.++...|++++|+..++++++..|+++.....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 9999999999999999999999999988876443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=75.57 Aligned_cols=95 Identities=6% Similarity=0.006 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-------hHHH
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-------NYTM 519 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 519 (605)
..+..++..+.+.|++++|++.|+++ .+.| +...|..++.+|...|++++|+..+++++++.|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45677888899999999999999887 3334 4778888999999999999999999999999877653 6777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037404 520 LSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++.++...|++++|++.+++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888899999999999999998873
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=79.54 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=46.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACR 491 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 491 (605)
.+..+...+...|++++|+..|+++.+. .+.+...+..+..+|.+.|++++|+..|++. .+.| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444455555555555555554441 1223444444444445555555555544444 1122 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
..|++++|+..++++++++|+++..
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHH
Confidence 4555555555555555544444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-07 Score=75.64 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=88.2
Q ss_pred CCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037404 408 FGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWG 484 (605)
Q Consensus 408 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 484 (605)
+.|+ ...+..+...+.+.|++++|...|+.+.. -.+.+...|..++.+|...|++++|++.|+++ .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3453 34677777889999999999999999987 34557888999999999999999999999988 3344 467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.++.++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-07 Score=74.51 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=86.1
Q ss_pred CchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
.+...+..++..+...|++++|...|++. .. +.+...+..++.++...|++++|...++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888999999999988876 22 34577888899999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 037404 524 FAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+...|++++|+..++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999998754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.2e-07 Score=78.46 Aligned_cols=153 Identities=8% Similarity=-0.035 Sum_probs=88.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCC-chHHHHHHHHHhhhcCCH
Q 037404 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILP-QVEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 389 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 464 (605)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..... +..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 11233445555555666666666666665554411 1111 234556666667777777
Q ss_pred HHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--CCC----chHHHHHHHHHhcCC
Q 037404 465 KEALRLVQSM-PV---EP-N----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKG--SDP----GNYTMLSNIFAATGD 529 (605)
Q Consensus 465 ~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 529 (605)
++|.+.+++. .. .+ + ...+..+...+...|++++|...++++++..+ .++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666654 10 11 2 23566677777888888888888888876532 222 235678888888888
Q ss_pred hHHHHHHHHHHHh
Q 037404 530 WNKVANVRLQMKK 542 (605)
Q Consensus 530 ~~~A~~~~~~~~~ 542 (605)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888776
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-06 Score=80.40 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMTK---KDL------VSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---GPD--KY 413 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~ 413 (605)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778888999999888875431 111 2234456667788899999999999875321 222 34
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHh---hCCCC--chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC------CC-CH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERD---YGILP--QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV------EP-NA 480 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 480 (605)
+++.+...|...|++++|...++++... .+..+ ...++..++..|...|++++|.+.+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732 12112 1258889999999999999999999876 11 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 037404 481 IIWGTLLGACRKHNAVELA-EEVLDCLIRL 509 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 509 (605)
.++..++.++...|++++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 8889988875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=71.40 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..++..+...|++++|.+.+++. .. +.+...+..++..+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666677777777777777766 22 2356666777777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037404 526 ATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~~~ 543 (605)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 777777777777777764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-07 Score=78.09 Aligned_cols=128 Identities=7% Similarity=-0.004 Sum_probs=99.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-hhhcCCH--
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL-LGRSGRL-- 464 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 464 (605)
...|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++... .+.+...+..++.. +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888888888887753 346678888888899999999999999998773 23466777888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 465 KEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
++|...++++ ...| +...+..++..+...|++++|...++++++..|.++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 3334 4678888999999999999999999999999999876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-07 Score=79.85 Aligned_cols=167 Identities=8% Similarity=-0.079 Sum_probs=101.4
Q ss_pred HHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 356 YAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
....|+++.+.+.++.-... ....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------------
Confidence 34445555555555432211 33456666666777777777777777766632 211000000
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
....-.. ......+..+..+|.+.|++++|+..++++ .. +.+...+..++.++...|++++|+..++++++..
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0000000 001356777888888999999999988887 32 3457788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 037404 511 GSDPGNYTMLSNIFAATGDWNKVA-NVRLQMKKT 543 (605)
Q Consensus 511 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 543 (605)
|.++.++..++.++...|+.+++. ..+..+...
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998888877 556655543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.2e-07 Score=73.12 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=90.0
Q ss_pred CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
+.+...+..++..+...|++++|.+.+++. ...| +...+..++..+...|++++|+..++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678888999999999999999999987 4444 67788999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 037404 523 IFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 523 ~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++...|++++|++.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-07 Score=69.92 Aligned_cols=110 Identities=13% Similarity=0.015 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGAC 490 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 490 (605)
..+..+...+...|++++|...++.+.. ..+.+...+..++..+...|++++|...+++. ... .+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455566667777777777777777766 23345667777778888888888888888776 223 3567788888899
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
...|++++|...++++.+..|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999888877777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=6e-07 Score=73.84 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+...+..++..+...|++++|.+.|++. ...|+ ...+..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556667777777777888887777776 45565 456777777778888888888888888888888877888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 8888888888888888887763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=78.87 Aligned_cols=137 Identities=13% Similarity=-0.052 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCMIDL 457 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 457 (605)
+..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344566778888888888888877664 35444555555678889999999999986644 11 221 3467788999
Q ss_pred hhhcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM--P-VEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+...|++++|++.|++. + ..|. .........++.+.|+.++|...|+++...+|. +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999987 2 2143 346677888899999999999999999999998 66655553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-07 Score=71.47 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..++..+...|++++|.+.++++ . .+.+..++..++..+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 2 23467788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037404 526 ATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~~~ 543 (605)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999999875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.5e-07 Score=71.40 Aligned_cols=111 Identities=12% Similarity=-0.070 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGAC 490 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 490 (605)
..+......+...|++++|...|++..+ -.+.+...+..++.+|.+.|++++|++.+++. ...| +...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455566667778888888888887776 23445677888888888888888888888877 3334 467888889999
Q ss_pred HhcCCHHHHHHHHHHHHhhc------CCCCchHHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLK------GSDPGNYTMLSNIFA 525 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 525 (605)
...|++++|...++++++.+ |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999998 887777777766653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.5e-07 Score=74.16 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGAC 490 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 490 (605)
..+..+...+...|++++|...|+.+.. ..+.+...|..+..+|.+.|++++|...|+++ ... .+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455566677788888888888888876 23446777888888888888999988888887 223 3466778888999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
...|++++|...++++++..|.++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999888765554433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-07 Score=75.90 Aligned_cols=64 Identities=6% Similarity=0.011 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888899999999999999999999999999999999999999999999999999999884
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=74.84 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=74.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEPN-------------AIIWGTLLGACRKHNAVELAEEVLDCLIRL------- 509 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 509 (605)
+...+..+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344455555666666666666554 22222 338889999999999999999999999999
Q ss_pred cCCCCchH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 KGSDPGNY----TMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 ~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|+++..| +..+.++...|++++|+..|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999885
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.6e-07 Score=78.71 Aligned_cols=153 Identities=12% Similarity=-0.012 Sum_probs=102.6
Q ss_pred hcCChHHHHH---HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhcccCCHH
Q 037404 358 KCGSLDNAMS---VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD----EGFGP-DKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 358 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 429 (605)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566667766 44432223445667777777778888888887777665 12122 2345667777888888888
Q ss_pred HHHHHHHHhHHhh---CCCC--chHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 037404 430 KGVQYFYSMERDY---GILP--QVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN----AIIWGTLLGACRKHNAV 496 (605)
Q Consensus 430 ~a~~~~~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 496 (605)
+|...+++..... +..| ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8888888776631 2111 2345777888888899999998888776 11122 23457788889999999
Q ss_pred HHHHHHHHHHHhhc
Q 037404 497 ELAEEVLDCLIRLK 510 (605)
Q Consensus 497 ~~A~~~~~~~~~~~ 510 (605)
++|...++++.++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988863
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=73.88 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=71.3
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456666777777777777777777776 2223 5667777777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 037404 525 AATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~~ 545 (605)
...|++++|+..+++..+...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHS
T ss_pred HHccCHHHHHHHHHHHHHhCC
Confidence 777777777777777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.9e-07 Score=71.91 Aligned_cols=97 Identities=9% Similarity=0.006 Sum_probs=88.2
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788899999999999999999987 2 2346778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037404 525 AATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~ 543 (605)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999885
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=72.34 Aligned_cols=129 Identities=12% Similarity=-0.039 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++... ..+.+...+..++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 456667777888888888888888887753 33567777888888888999999998888877 234567788888888
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWG--TLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+...|++++|.+.++++ ...| +...+. ..+..+...|++++|...+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999998887 2223 344443 3344467788999999988877664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-05 Score=69.36 Aligned_cols=229 Identities=10% Similarity=0.069 Sum_probs=143.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-Ch
Q 037404 287 AEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC-G-SL 362 (605)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 362 (605)
...+..++|++++.+++.. .|+ ...++.--.++...| +++++..++..+..... .+..+|+.-..++... + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCCh
Confidence 3445557888888888875 344 344555555555666 48888888888887653 3566676666666665 6 78
Q ss_pred HHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC----
Q 037404 363 DNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGE--------KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF---- 427 (605)
Q Consensus 363 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 427 (605)
++++++++++... |..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 8888888887744 5566665555555555555 8888888888864 3366677776666666665
Q ss_pred ---HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCH--------------------HHHHHHHHhC-CC-------
Q 037404 428 ---IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL--------------------KEALRLVQSM-PV------- 476 (605)
Q Consensus 428 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------- 476 (605)
++++++.+.+++. ..+-|...|+.+-..+.+.|+. .+..+...++ ..
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6778888887776 3455677777766666665543 2333333333 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhcCCCCchHHHHH
Q 037404 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLI-RLKGSDPGNYTMLS 521 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 521 (605)
.++...+..++..|...|+.++|.++++.+. +.+|.....|...+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2455566666677777777777777777765 34565554444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=70.60 Aligned_cols=113 Identities=7% Similarity=-0.169 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLG 488 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~ 488 (605)
+...+..+...+...|++++|...|+.+... .+.+...+..++.++...|++++|...+++. ... .+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566777777778888888888888877762 3445677788888888888888888888876 223 35678888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHH
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGS-----DPGNYTMLSNIFA 525 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 525 (605)
++...|++++|+..++++++..|+ +..+...+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877 5555555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-07 Score=80.10 Aligned_cols=96 Identities=7% Similarity=-0.088 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-N----------------AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
...+..++..+...|++++|.+.|++. ...| + ...+..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777777888888888888766 2111 1 267888899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|.++.++..++.+|...|++++|+..+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-06 Score=70.09 Aligned_cols=113 Identities=9% Similarity=-0.118 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWG 484 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 484 (605)
+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555555666666666666666666644 2333 456667777777888888888877766 2233 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
.+..++...|++++|...++++++.+|.++.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888899999999999999999999999988888777766543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.7e-07 Score=71.59 Aligned_cols=92 Identities=16% Similarity=0.067 Sum_probs=69.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHHHHHH
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PVEPN-A---IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTMLSNI 523 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 523 (605)
..++..+...|++++|.+.|+++ ...|+ . ..+..++.++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677778888888877776 22232 2 466677788888888888888888888888888 6668888888
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 037404 524 FAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888874
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-05 Score=74.44 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=154.6
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhHHHHHHHHHHHc-C-ChHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG-SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMH-G-QGEKALG 398 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~A~~ 398 (605)
+..++|.+++..+...+.. +..+++.--..+...| .+++++.+++.+. +++..+|+.-...+... + ++++++.
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3346788888888877633 5667777777777788 5999999999876 45667888777777766 7 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHH--------HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC-------
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFID--------KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR------- 463 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 463 (605)
+++++.+.. +-|..+|+.-..++.+.|.++ ++++.++++.+ ..+-|...|+.....+.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHH
Confidence 999999753 336667766555555555555 89999999988 345678888888888888776
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhhc------CCCCc
Q 037404 464 LKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAV--------------------ELAEEVLDCLIRLK------GSDPG 515 (605)
Q Consensus 464 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~ 515 (605)
++++++.++++ . .+-|...|+.+...+.+.|.. .....+..++.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 78899998877 3 334677787777777666543 33444444443332 45667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++..++++|...|+.++|.++++.+.+.
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8889999999999999999999998753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-06 Score=85.05 Aligned_cols=145 Identities=10% Similarity=-0.049 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
...|..+...|.+.|++++|+..|++..+. .|+... .. .+... .... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYG----------LS-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS----------CC-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hccccc----------CC-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 345666666777777777777777776653 121100 00 00000 0000 12457888899
Q ss_pred HhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHH
Q 037404 457 LLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 534 (605)
+|.+.|++++|+..++++ .+ +.+...+..+..+|...|++++|+..|+++++++|.++.++..++.++.+.|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 33 3457789999999999999999999999999999999999999999999999999876
Q ss_pred -HHHHHHHhC
Q 037404 535 -NVRLQMKKT 543 (605)
Q Consensus 535 -~~~~~~~~~ 543 (605)
..+++|..+
T Consensus 406 ~~~~~~~f~k 415 (457)
T 1kt0_A 406 RRIYANMFKK 415 (457)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 455666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.42 E-value=7.6e-07 Score=89.12 Aligned_cols=119 Identities=8% Similarity=-0.031 Sum_probs=97.6
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAV 496 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 496 (605)
...+.+.|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|++.++++ ...| +...+..++.++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34567788999999999988872 3445788889999999999999999999887 3344 577889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 037404 497 ELAEEVLDCLIRLKGSDPGNYTMLSNI--FAATGDWNKVANVRLQ 539 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 539 (605)
++|++.++++++.+|.++..+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8899999999999983
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-07 Score=72.64 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 461 SGRLKEALRLVQSM-PV---EPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 461 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
.|++++|+..|++. .. .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666677777665 33 233 44667777777777888888888888888778777777888888888888888888
Q ss_pred HHHHHHhC
Q 037404 536 VRLQMKKT 543 (605)
Q Consensus 536 ~~~~~~~~ 543 (605)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.9e-07 Score=70.89 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------CchHHH
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-------PGNYTM 519 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 519 (605)
..+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|...++++.+..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666666666666666666655 1 22345566666666667777777777777777766554 556667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 037404 520 LSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++.++...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777666
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=70.13 Aligned_cols=110 Identities=7% Similarity=-0.040 Sum_probs=71.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV----EPN----AIIWG 484 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 484 (605)
.+..+...+...|++++|...++.+... .+.+...+..++..+...|++++|...++++ .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555666666666666666551 2334555666666666666666666666655 11 122 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
.++.++...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 788888888999999999999888877 56666666665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-05 Score=69.24 Aligned_cols=191 Identities=9% Similarity=0.025 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC-hHHHHHHH
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG--SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ-GEKALGLF 400 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 400 (605)
++.+..++..+...+ +.+..+|+.-..++...| .+++++.+++++. +.|..+|+--...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555666555544 235555555555555555 3566666666655 3455566655555556666 46677777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccc--------------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc-----
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHA--------------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS----- 461 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 461 (605)
+++.+.. .-|...|+.....+... +.++++++.+..... -.+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 7766643 22444444433333222 335566666666655 2333455554443333333
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 462 ------GRLKEALRLVQSM-PVEPNA-IIWGTLLG---ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 462 ------g~~~~A~~~~~~~-~~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+.++++++.++++ ...||. ..+..++. .....|..++....+.++.+++|....-|..+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 2344555555554 223332 12211111 111234455555555555555555554444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-06 Score=82.24 Aligned_cols=163 Identities=7% Similarity=-0.089 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCC-chHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDK----YTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILP-QVEH 450 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 450 (605)
+..++..|...|++++|.+.+.++...- -.++. ...+.+-..+...|+++.|..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567777888888888888777765421 11122 123333445566788888888887765421 2222 2557
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CC----Cc
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-----P--VEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKG---SD----PG 515 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~ 515 (605)
+..++..|...|++++|..++++. + ..+. ..++..++..|...|++++|..+++++....+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778899999999999999988766 1 1222 44777888999999999999999999887642 22 13
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466777888889999999998888865
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=72.10 Aligned_cols=128 Identities=10% Similarity=-0.065 Sum_probs=78.9
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHH
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN----AIIW 483 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~ 483 (605)
..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++. +..++ ...+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 33444444445555555544444331100011 134555666666666666666666654 10111 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCC------CCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGS------DPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+...+...|++++|...++++++..+. .+..+..++.++...|++++|.+.+++..+.
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67778888889999999988888876321 2346778889999999999999999888763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.2e-06 Score=66.26 Aligned_cols=105 Identities=12% Similarity=-0.042 Sum_probs=74.3
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCch---HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQV---EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGA 489 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 489 (605)
+...+...|++++|...++.+.+. .+.+. ..+..++.++.+.|++++|...|+++ ...|+ ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444566677777777777777662 22222 46667777788888888888888776 22233 5567778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...|++++|...++++++..|+++........+-
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999998876655554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-06 Score=67.98 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=51.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC----CC----HHHHHHHH
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE----PN----AIIWGTLL 487 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~~l~ 487 (605)
.+...+.+.|++++|+..|+++++ -.+.+...|..++.+|.+.|++++|++.+++. .+. ++ ..++..++
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344444445555555555554444 12223444555555555555555555555443 111 11 23556667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
.++...|++++|++.|+++++..|+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777788888888888888776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00011 Score=68.34 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=133.0
Q ss_pred hHHHHHHHhcCC---CCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-HHHHHHHH
Q 037404 362 LDNAMSVFNGMT---KKDLVSWNAMLYGLAMHG--QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF-IDKGVQYF 435 (605)
Q Consensus 362 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 435 (605)
+++++.+++.+. +++..+|+.-...+...+ .+++++..++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777665 557788888887888877 4899999999999864 3467777776666777787 68999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHHhhhc--------------CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc------
Q 037404 436 YSMERDYGILPQVEHYGCMIDLLGRS--------------GRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKH------ 493 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~------ 493 (605)
..+++ ..+-|...|+.....+.+. +.++++++.+++. . .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 99988 3456777787776666554 4578899998887 2 334566776555555544
Q ss_pred -----CCHHHHHHHHHHHHhhcCCCCchHHHHHHH---HHhcCChHHHHHHHHHHHhC
Q 037404 494 -----NAVELAEEVLDCLIRLKGSDPGNYTMLSNI---FAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 494 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~ 543 (605)
+.++++++.++++++..|++...+..++.. ....|..++....++++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 468999999999999999986554444433 22468888999999999984
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.32 E-value=3e-06 Score=78.35 Aligned_cols=113 Identities=7% Similarity=-0.180 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLG 488 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 488 (605)
+...+..+...+...|++++|...|+++... .+.+...+..++..|.+.|++++|.+.++++ ...| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777888899999999999999999872 3447788889999999999999999999887 4445 4668888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
++...|++++|+..++++++.+|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999998877655444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=83.10 Aligned_cols=149 Identities=11% Similarity=-0.053 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666677777788888888888887763 344331 223334443332221 136788888
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH-HhcCChHHH
Q 037404 457 LLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF-AATGDWNKV 533 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 533 (605)
+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..|+++++++|.++.++..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3334 5778888999999999999999999999999999999988888884 455778888
Q ss_pred HHHHHHHHhCCC
Q 037404 534 ANVRLQMKKTRA 545 (605)
Q Consensus 534 ~~~~~~~~~~~~ 545 (605)
...++++.+..+
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888877543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=66.76 Aligned_cols=97 Identities=7% Similarity=-0.010 Sum_probs=66.6
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH 493 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 493 (605)
..+...+.+.|++++|...++++.+ ..+.+...+..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444556677777777777777766 23446667777777888888888888888776 3334 466777788888888
Q ss_pred CCHHHHHHHHHHHHhhcCCCC
Q 037404 494 NAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~ 514 (605)
|++++|+..++++++.+|.++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888877654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.5e-06 Score=65.16 Aligned_cols=99 Identities=14% Similarity=-0.037 Sum_probs=63.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP---NAIIWGTLLGA 489 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 489 (605)
.+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555556666666666666666552 2334556666666777777777777777665 2223 46677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhhcCCCC
Q 037404 490 CRKH-NAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 490 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 514 (605)
+... |++++|.+.++++.+..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888888777777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=76.59 Aligned_cols=131 Identities=6% Similarity=-0.125 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD--------------KYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
+...|..+...|.+.|++++|+..|++..+...... ...+..+..++.+.|++++|+..++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 345677778888888888888888888887532111 47788888999999999999999999988
Q ss_pred hCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 037404 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELA-EEVLDCLIR 508 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 508 (605)
-.+.+...+..+..+|...|++++|...|+++ .+.| +...+..+..++...|++++| ...++++..
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24457888999999999999999999999987 3344 567888888999999999988 456666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-06 Score=80.06 Aligned_cols=138 Identities=7% Similarity=-0.106 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
..+..+...+.+.|++++|+..|++..+. .+... ..... +.... ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHHH
Confidence 45666667777777777777777776652 01000 00000 11100 111245678889999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|.++.++..++.++...|+.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 5555 477889999999999999999999999999999999999999999999988887765
Q ss_pred H
Q 037404 536 V 536 (605)
Q Consensus 536 ~ 536 (605)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=71.34 Aligned_cols=79 Identities=19% Similarity=0.056 Sum_probs=65.1
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-chHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP-GNYTMLSNI 523 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 523 (605)
+...|..+..+|.+.|++++|+..++++ .+.| +...|..++.++...|++++|...++++++++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567888899999999999999999887 3334 577899999999999999999999999999999988 555555555
Q ss_pred HH
Q 037404 524 FA 525 (605)
Q Consensus 524 ~~ 525 (605)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=9.9e-06 Score=81.01 Aligned_cols=115 Identities=9% Similarity=0.017 Sum_probs=53.0
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 431 (605)
.+.+.|++++|.+.|++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555555443 2234455555555555555555555555555532 12334455555555555555555
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHH--hhhcCCHHHHHHHHH
Q 037404 432 VQYFYSMERDYGILPQVEHYGCMIDL--LGRSGRLKEALRLVQ 472 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 472 (605)
.+.++++.+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555442 11122233333333 444555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=68.92 Aligned_cols=93 Identities=15% Similarity=0.064 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037404 425 AGFIDKGVQYFYSMERDYG--ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
.|++++|+..|+++.+ .+ .+.+...+..++..|...|++++|.+.|+++ ...| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 5677778888877765 12 1334567788888888899999999988887 3333 4678888899999999999999
Q ss_pred HHHHHHHhhcCCCCchHH
Q 037404 501 EVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~ 518 (605)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6e-05 Score=76.80 Aligned_cols=169 Identities=8% Similarity=-0.010 Sum_probs=133.0
Q ss_pred ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC-
Q 037404 361 SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ----------GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG- 426 (605)
Q Consensus 361 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g- 426 (605)
..++|++.++++. +.+..+|+.-...+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777665 3355667666666666666 899999999998853 335677877777778888
Q ss_pred -CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 037404 427 -FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG-RLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH--------- 493 (605)
Q Consensus 427 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 493 (605)
+++++.+.++++.+ ..+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 67999999999988 34557888888888888888 899999999988 4444 567888777776653
Q ss_pred -----CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 494 -----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 494 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.++++.+++.+++..+|.+..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=8.5e-06 Score=61.60 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+...+..++.++...|++++|+..++++++.+|.++.+|..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357788899999999999999999999999999999999999999999999999999999999874
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.3e-07 Score=69.50 Aligned_cols=93 Identities=15% Similarity=0.008 Sum_probs=76.6
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYT 518 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 518 (605)
+...+..++..+...|++++|.+.|++. .. +.+...+..+..++...|++++|+..++++++.+|++ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566778888889999999999999887 32 3457788889999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 037404 519 MLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 519 ~l~~~~~~~g~~~~A~~~~~~ 539 (605)
.++.++...|++++|++.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.4e-05 Score=76.44 Aligned_cols=160 Identities=9% Similarity=-0.035 Sum_probs=119.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPD----------------KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445677888888888888776432111 124677889999999999999999988764333333
Q ss_pred h----HHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----
Q 037404 448 V----EHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLK----- 510 (605)
Q Consensus 448 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 510 (605)
. .+.+.+...+...|++++|.+++++. +..+. ..++..++..+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23445556667789999999988765 22333 4577889999999999999999999988752
Q ss_pred -CCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 511 -GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 511 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+....++..++.+|...|++++|..++++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 222357888999999999999999999998763
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.6e-06 Score=81.23 Aligned_cols=123 Identities=9% Similarity=0.006 Sum_probs=95.6
Q ss_pred hcccCCHHHHHHHHHHhHHhhC--CCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYG--ILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGT 485 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 485 (605)
+...|++++|+.++++..+... +.| ...+++.|+..|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888888877765321 112 2457888888999999999998888765 23344 447899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCch---HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRL-----KGSDPGN---YTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
|+..|...|++++|+.++++++++ .|++|.+ ...+..++..+|++++|..++.++.+.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 5777654 5578888899999999999999998743
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=67.09 Aligned_cols=133 Identities=8% Similarity=-0.038 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC----chH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PD----KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP----QVE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 449 (605)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666665542100 11 13455666677777777777777777654211111 134
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-------PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5667777888888888888887765 1111 134667778888899999999999999887643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=77.37 Aligned_cols=112 Identities=4% Similarity=-0.055 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP-NAIIWGTLLGACR 491 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 491 (605)
..+..+...+.+.|++++|+..|+++.+.. +.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777776665510 000 0000111110 1223 3568888999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+.|++++|+..++++++.+|.++.++..++.+|...|++++|++.++++.+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999984
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.15 E-value=7e-06 Score=66.66 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PV-------EPNA-IIW----GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
.|..+..++.+.|++++|+..+++. .+ .|+. ..| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777665 34 7764 478 889999999999999999999999999998876
Q ss_pred HHHHHHH
Q 037404 517 YTMLSNI 523 (605)
Q Consensus 517 ~~~l~~~ 523 (605)
+..+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=80.59 Aligned_cols=95 Identities=8% Similarity=-0.054 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----------------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
.+..+...|.+.|++++|...|+++ ...|+ ...|..+..++.+.|++++|+..++++++++|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4445555555556666666555554 11111 568888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 513 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++.+|..++.+|...|++++|+..|+++.+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.2e-06 Score=63.31 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=66.0
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 466 EALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 466 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|++.|++. ...| +...+..++..+...|++++|+..++++++.+|.++..+..++.+|...|++++|+..+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355566555 3333 56788888999999999999999999999999999999999999999999999999999998874
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-05 Score=58.40 Aligned_cols=81 Identities=21% Similarity=0.193 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..+...+...|++++|.+.+++. .. +.+...+..+..++...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 22 2356677788888888888999999998888888888888888888876
Q ss_pred hcC
Q 037404 526 ATG 528 (605)
Q Consensus 526 ~~g 528 (605)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=76.95 Aligned_cols=153 Identities=8% Similarity=-0.025 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
...+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788889999999999999997653222111 1222333444333221 13677788889999
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA-IIWGTLLGA-CRKHNAVELAEEV 502 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~A~~~ 502 (605)
|++++|+..++++.+ ..+.+...+..+..+|...|++++|.+.|+++ .+.|+. ..+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 23456788999999999999999999999998 555653 355555544 2345678888999
Q ss_pred HHHHHhhcCCCCc
Q 037404 503 LDCLIRLKGSDPG 515 (605)
Q Consensus 503 ~~~~~~~~p~~~~ 515 (605)
|.+++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.03 E-value=7.2e-05 Score=55.13 Aligned_cols=69 Identities=6% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 477 EPNAIIWGTLLGACRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
++|+..+..+..++...++ .++|..+++++++.+|+++..+..++..+.+.|++++|+..++++.+..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888865554 79999999999999999999999999999999999999999999998654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-06 Score=67.55 Aligned_cols=85 Identities=7% Similarity=0.006 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 460 RSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNA----------VELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
+.+.+++|.+.+++. ... .+...|..+..++...++ +++|+..|+++++++|+++.+|+.++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455666666555 222 245555556555555544 57999999999999999999999999999887
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 037404 528 G-----------DWNKVANVRLQMKKTR 544 (605)
Q Consensus 528 g-----------~~~~A~~~~~~~~~~~ 544 (605)
| ++++|++.|+++.+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999999854
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-05 Score=58.92 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++...+..++..+...|++++|+..++++++..|.++.++..++.++...|++++|++.++++.+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999999999999999999999999999999999999999999854
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00017 Score=58.09 Aligned_cols=110 Identities=8% Similarity=-0.051 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEV 502 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 502 (605)
++++|..+|++..+ .+ .|+. . +...|...+.+++|.+.|++.-...+......+...|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45566666666655 23 2222 2 555566666666666666665222456666666666666 6777777777
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037404 503 LDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 503 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 544 (605)
++++.+. .++..+..|+.+|.. .++.++|.+++++..+.|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777764 456677777877777 777888888888777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00017 Score=73.48 Aligned_cols=152 Identities=16% Similarity=0.045 Sum_probs=125.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCC----------HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 391 GQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGF----------IDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
...++|++.++++... .|+. ..|+.--.++...|+ ++++.+.++.+.+ ..+.+..+|..-...+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3456889999999985 5654 456655555666666 8999999999988 45667888998888899
Q ss_pred hcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-------
Q 037404 460 RSG--RLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHN-AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT------- 527 (605)
Q Consensus 460 ~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 527 (605)
+.| +++++++.++++ . .+-+...|+.-..++.+.| .++++.++++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 3 3456889998888888999 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhCCCC
Q 037404 528 -------GDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 528 -------g~~~~A~~~~~~~~~~~~~ 546 (605)
++++++++.+++++...+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999999886544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.1e-05 Score=78.02 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=88.2
Q ss_pred HHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCc---hH
Q 037404 456 DLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPG---NY 517 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~ 517 (605)
..+..+|++++|+.++++. +..|+ ..+++.|+.+|...|++++|+.++++++++ .|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999988765 12343 458899999999999999999999999885 456654 57
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhh
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (605)
..|+.+|..+|++++|+.+++++.+..... -...||...++..++.....++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~------------------lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVT------------------HGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999998732100 01358888888877776664443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.83 E-value=4.2e-05 Score=72.57 Aligned_cols=235 Identities=13% Similarity=0.102 Sum_probs=142.9
Q ss_pred CCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 037404 48 DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127 (605)
Q Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 127 (605)
.+.+|..|..++...+++.+|++.|= ...|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45667777777777777777776553 344556677777777777877777777665554422 33444567777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC------------------------CCe
Q 037404 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE------------------------RDI 183 (605)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~------------------------~~~ 183 (605)
.+++.+.++++ -.|+..-.....+-|...| .++.|.-+|..+.. .++
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~--lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEK--MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSC--CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHcc--CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77666544443 2455555666666666667 66666666655532 345
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHhhc-CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC---CCChhHHHHHHHHHHhcC
Q 037404 184 VSWNSMIAGLVKGGELSEARRLFDEM-PERDAVSWNTILDGYAKAGEMNLAFELFEKIP---HRNIVSWSTMVWGYSKDG 259 (605)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 259 (605)
.+|-.+-.+|...+.+.-|...--.+ +.+|. ...++..|-..|.+++-+.+++... +...-.++-|.-.|++-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 56666666666666665543322222 22221 1223444556677777777776654 24556777887777775
Q ss_pred CHHHHHHHHhhCCC----C-------CcccHHHHHHHHHhCCChHHHHHH
Q 037404 260 DMEMAKLLFDRMPA----K-------TLVPWTIIISGYAEKGMAKEAARL 298 (605)
Q Consensus 260 ~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~ 298 (605)
++++..+.++..-. + ....|..++-.|.+..+++.|...
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 45555555554322 1 222388888888888888877644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00013 Score=58.42 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhc-C-CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce
Q 037404 477 EPNAIIWGTLLGACRKHN---AVELAEEVLDCLIRLK-G-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 551 (605)
.++..+...+.+++++++ +.++++.+++++.+.+ | .+.+.++.|+-.+.+.|++++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 467777777888888877 6668888888888877 6 45778888888888888888888888888872
Q ss_pred eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
+|+..+...+.+.+.+.+++.|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 556666777777777777777665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.77 E-value=9.8e-05 Score=54.26 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|+..+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35577888899999999999999999999999999999999999999999999999999999885
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=71.16 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=89.2
Q ss_pred HHHhhhcCCHHHHHHHHHhC-C-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCc---h
Q 037404 455 IDLLGRSGRLKEALRLVQSM-P-----VE---PN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPG---N 516 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~-----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~ 516 (605)
+..+.+.|++++|++++++. . .. |+ ..+++.++.+|...|++++|+.+++++++. .|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999988765 1 12 22 457888999999999999999999999875 355554 5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhh
Q 037404 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588 (605)
Q Consensus 517 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (605)
+..|+.+|..+|++++|+.+++++.+-... .-...||...++...+.....+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999999873110 002368899998888888877765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=56.11 Aligned_cols=82 Identities=9% Similarity=-0.005 Sum_probs=60.2
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
.|+..++++.+ ..+.+...+..++..|...|++++|.+.|++. ... .+...+..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666655 23445677777888888888888888888776 223 346678888888888899999999999988
Q ss_pred hhcCCC
Q 037404 508 RLKGSD 513 (605)
Q Consensus 508 ~~~p~~ 513 (605)
+..|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.8e-05 Score=62.99 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC----------HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR----------LKEALRLVQSM-PVEPN-AIIWGTLLGACRKH 493 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 493 (605)
+.+++|.+.++...+ --+.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 345555555555554 123345555555555555544 34777777666 44443 55677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCCc
Q 037404 494 -----------NAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 494 -----------g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
|++++|+..|+++++++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 5899999999999999999753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00075 Score=54.23 Aligned_cols=111 Identities=11% Similarity=-0.090 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----cCCHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----SGRLKE 466 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 466 (605)
+++++|+.+|++..+.| .|+.. +...|...+..++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 56889999999999887 44444 667788888899999999999872 466778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhc
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 510 (605)
|.++|++.-..-++.....|...|.. .+++++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988333577888889999988 899999999999998863
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.1e-05 Score=55.89 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=60.7
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 454 MIDLLGRSGRLKEALRLVQSM-PVEP-NAI-IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
.+..+.+.|++++|.+.++++ ...| +.. .+..++.++...|++++|+..++++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888877 3333 456 78888888889999999999999999999988876633 455
Q ss_pred HHHHHHHHHHHh
Q 037404 531 NKVANVRLQMKK 542 (605)
Q Consensus 531 ~~A~~~~~~~~~ 542 (605)
.++...+++...
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 566666655544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0001 Score=71.88 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=64.8
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCc---hHHHHH
Q 037404 460 RSGRLKEALRLVQSM---------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPG---NYTMLS 521 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~ 521 (605)
..|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.++++++++ .|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777654 12233 357888999999999999999999999875 355554 578899
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 037404 522 NIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+|..+|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999987
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00027 Score=52.96 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=55.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPG-NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+..+...|++++|+..++++++.+|.++. .+..++.+|...|++++|++.++++.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999999 99999999999999999999999999854
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0041 Score=58.08 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 037404 374 KKDLVSWNAMLYGLA--MHG---QGEKALGLFSRMKDEGFGPDK-YTFVGVLCAC 422 (605)
Q Consensus 374 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~ 422 (605)
+.+...|...+++.. ..+ +..+|..+|++..+. .|+. ..+..+..+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 446667766665532 223 347788888888874 5653 4444444333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00087 Score=65.33 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=67.9
Q ss_pred ccCCHHHHHHHHHHhHHhh--CCCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDY--GILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGTLL 487 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 487 (605)
..|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++ +..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777665421 1122 2456778888888888888888888765 23454 34788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh-----cCCCCchH
Q 037404 488 GACRKHNAVELAEEVLDCLIRL-----KGSDPGNY 517 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~ 517 (605)
..|...|++++|+.++++++++ .|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999885 47776543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0014 Score=49.13 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
++..|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666666665542 12334555555666666666666666665544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0029 Score=61.76 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=73.2
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhh--CCCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDY--GILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AII 482 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 482 (605)
+..+.+.|++++|+..+++..... -+.| ...+++.++..|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888887776421 1222 2457788888888889999888888766 23344 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCchHHH
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPGNYTM 519 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 519 (605)
++.|+..|...|++++|+.++++++++ .|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 889999999999999999999999985 5777755443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0002 Score=68.08 Aligned_cols=367 Identities=11% Similarity=0.069 Sum_probs=178.8
Q ss_pred cchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCC--CCcchHHHHHHHHHcC
Q 037404 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKA 227 (605)
Q Consensus 150 ~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~ 227 (605)
+.+|+.|..+....+ .+.+|.+-|- +..|+..|..+|....+.|.+++-+..+....+ .++..=+.++-+|++.
T Consensus 54 p~VWs~LgkAqL~~~--~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKG--MVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSS--SCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccC--chHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 344555555555544 4444433221 123444455555555555555555555544422 1222334455555555
Q ss_pred CChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC------------------------CCCcccHHHHH
Q 037404 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP------------------------AKTLVPWTIII 283 (605)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~~~~l~ 283 (605)
+++.+-.+++ ..||..-...+.+-|...|.++.|.-+|..+. ..++.+|-.+-
T Consensus 130 ~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 5544322221 12333334444444445555554444444332 23556688877
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 037404 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363 (605)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 363 (605)
.+|...+.+.-|.-.--.+.- .||. +..++..|...|.+++.+.+++.-.... .....+|+-|.-.|++- +++
T Consensus 207 ~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~Pe 279 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQ 279 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTT
T ss_pred HHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHH
Confidence 888887777766555444432 2221 2234556667777777777766655321 33566677777766653 455
Q ss_pred HHHHHHhcCCC----C-------ChhHHHHHHHHHHHcCChHHHHHH-------------HHHHHHCCCCCCHHHHH---
Q 037404 364 NAMSVFNGMTK----K-------DLVSWNAMLYGLAMHGQGEKALGL-------------FSRMKDEGFGPDKYTFV--- 416 (605)
Q Consensus 364 ~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~~-------------~~~m~~~g~~p~~~~~~--- 416 (605)
+..+.++.... | ....|.-++-.|....++|.|... |++...+ -.|...|.
T Consensus 280 KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi 357 (624)
T 3lvg_A 280 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAI 357 (624)
T ss_dssp HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHH
Confidence 55555543331 1 345677777777777777766532 1111110 12223332
Q ss_pred ------------HHHHHhcccCCHHHHHHHHHHhHHhh---------CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 417 ------------GVLCACTHAGFIDKGVQYFYSMERDY---------GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 417 ------------~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
-|+.++...=+..++.+++++.-.-. .-..+..+-.++-+.|....+++.-...++.-.
T Consensus 358 ~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~yd 437 (624)
T 3lvg_A 358 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYD 437 (624)
T ss_dssp HHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCC
T ss_pred HHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 23333333333444444444331100 011233444566666777777665544443331
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHhh--cCCCCchHHHHHHHHHhcCChHH
Q 037404 476 ------------VEPNAIIWGTLLGACRKHNAVELAEEVL------DCLIRL--KGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 476 ------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
..+-...-..-...|.+.+++++++.+. +.+.+. ...++..-..|+..+...|+.+-
T Consensus 438 NFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~g~~Ec 514 (624)
T 3lvg_A 438 NFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKREC 514 (624)
T ss_dssp CSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCSTHH
T ss_pred cccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHH
Confidence 1111222233345566777787776553 333332 23455555666666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0024 Score=57.04 Aligned_cols=86 Identities=10% Similarity=0.192 Sum_probs=71.6
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHhc-CChHH
Q 037404 464 LKEALRLVQSM-PVEPN---AIIWGTLLGACRK-----HNAVELAEEVLDCLIRLKGSD-PGNYTMLSNIFAAT-GDWNK 532 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 532 (605)
..+|...+++. .+.|+ ...|..++..|.. -|+.++|++.|+++++++|+. ..++..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 55666777766 55676 5578888888888 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 037404 533 VANVRLQMKKTRAQKPS 549 (605)
Q Consensus 533 A~~~~~~~~~~~~~~~~ 549 (605)
|..++++.....++..|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999997765434
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.018 Score=44.95 Aligned_cols=91 Identities=8% Similarity=-0.023 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCC-CCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcee
Q 037404 477 EPNAIIWGTLLGACRKHNA---VELAEEVLDCLIRLKGS-DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 552 (605)
.|+..+--.+.+++.++.+ ..+++.+++.+.+..|. ....++.|+-.+.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 5777777778888888764 55788899998887774 5677888999999999999999999999983
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
.|+..+...+-+.++..+.+.|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 567777777777788888888765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0035 Score=48.11 Aligned_cols=65 Identities=6% Similarity=-0.140 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhc-C-CCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 478 PNAIIWGTLLGACRKHNAVEL---AEEVLDCLIRLK-G-SDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++..+--.+.+++.+++.... ++.+++...+.. | .....++.|+-.+.+.|+|++|+++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555666665554443 566666655544 3 3345566666666666666666666666665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.046 Score=41.89 Aligned_cols=141 Identities=10% Similarity=0.064 Sum_probs=102.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
+...|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+ ..| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk----iFD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS----YFD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG----GSC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh----hcC----------cHhhhcHHH
Confidence 44567888888888887763 3455566666555555555555556655533 222 235677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
....+-.++ .+....+..+......|+-++-.+++..++...+.+|..+..++.+|.+.|+..+|.+++.++=+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777777765 345556677888899999999999999877777888999999999999999999999999999988863
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0062 Score=56.86 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHh--cccC---CHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhh---cC-C-------HHHHHHHH
Q 037404 409 GPDKYTFVGVLCAC--THAG---FIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGR---SG-R-------LKEALRLV 471 (605)
Q Consensus 409 ~p~~~~~~~ll~~~--~~~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~-------~~~A~~~~ 471 (605)
+.+...|...+++. ...+ ...+|..+|+++++ ..|+ ...+..+..+|.. .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45666677666553 3333 45789999999987 2454 4455544444421 11 1 11222222
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 472 QSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 472 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..+ ..+.++.++..+...+...|++++|...+++++.++|. ...|..++.++.-.|++++|.+.++++....+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 233 23456788888887777789999999999999999864 56778999999999999999999999998654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0051 Score=49.16 Aligned_cols=91 Identities=13% Similarity=-0.038 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG---RLKEALRLVQSM-PVE-P--NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 499 (605)
....+.+.|.+... .-+++..+.-.+..++++.+ +.+++..++++. ... | +...+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34455566665554 23366777777777888877 566888888776 223 4 345677788889999999999
Q ss_pred HHHHHHHHhhcCCCCchHHH
Q 037404 500 EEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~ 519 (605)
+++++.+++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 99999999999988765443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0097 Score=44.77 Aligned_cols=71 Identities=8% Similarity=-0.063 Sum_probs=50.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-----P----VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+-.++..+.+.|+++.|...|+.+ + -.+...++..+..++.+.|+++.|...++++++..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344555555555555555555543 0 1234667888899999999999999999999999999887765554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.57 Score=47.66 Aligned_cols=114 Identities=10% Similarity=-0.016 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYT----FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
.+.+.|...|......+ ..+... ...+.......+...++...+..... ..++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888776543 223322 22333344455535566666665433 12333334444444557788888
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 467 ALRLVQSMPVEP--NAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 467 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
|.+.|+.|+..+ ...-.--+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888884332 233333456677778888888888888765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.11 Score=55.76 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=81.4
Q ss_pred HHHhCCChhHHHH-HHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 037404 192 GLVKGGELSEARR-LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 192 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 270 (605)
.....+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. . ..-.......|+++.|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHh
Confidence 3445667777666 442222 011225555666666777766655421 1 1112344567777777777666
Q ss_pred CCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHH
Q 037404 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350 (605)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (605)
+. +...|..+...+.+.++++.|...|.++.. +..+...+...|+.+...++-+.....|. ++
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 53 334577777777777777777777776532 22333334445555554444444443331 23
Q ss_pred HHHHHHHhcCChHHHHHHHh
Q 037404 351 ALVDMYAKCGSLDNAMSVFN 370 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~ 370 (605)
....+|.+.|++++|.+++.
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 33344555666666655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.082 Score=56.82 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445667777776665542 44667777777777777777777776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0089 Score=44.96 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-------GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...+..++..+.+.|+++.|...++++++.. +..+.++..|+.++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45666788999999999999999999999863 234567999999999999999999999999974
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.02 Score=41.79 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 445 LPQVEHYGCMIDLLGRSGR---LKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+.++..+..+..++...++ .++|..++++. ...| +...+..++..+.+.|++++|+..|+++++.+|.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4567777777777765544 68999999887 3344 4667778888899999999999999999998888443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.017 Score=44.44 Aligned_cols=89 Identities=7% Similarity=-0.023 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcC-CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcee
Q 037404 477 EPNAIIWGTLLGACRKHNA---VELAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 552 (605)
.|+..+--.+.+++.++.+ ..+++.+++.+.+..| .....++.|+-.+.+.|++++|+++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--------- 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------
Confidence 4677777778888887764 4578888888888777 34677888999999999999999999988873
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcC
Q 037404 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591 (605)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 591 (605)
.|+..+...+-..+++.+.+.|
T Consensus 108 -----------------eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 108 -----------------ERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhhc
Confidence 5666677777767777666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.03 Score=44.01 Aligned_cols=54 Identities=7% Similarity=-0.093 Sum_probs=43.3
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..++.++|+++|+.+++....-+.+|...+..-.++|+...|++++.+.+..+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 337888999999998887444466777788888899999999999999998654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.11 Score=42.67 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=56.5
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 434 (605)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566666666666554 3455666677766677777766666665442 23333344555555554444
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
-+....+ | -++.....+.-.|+++++.+++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3333221 1 13334444556666777666666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.12 Score=39.61 Aligned_cols=90 Identities=13% Similarity=-0.014 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE---ALRLVQSM-PVE-P--NAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...+.+.|...... +. ++..+--.+..++.+..+... ++.++++. ... | .....-.+.-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555441 33 566666667777777776555 77777766 222 3 2335566778899999999999
Q ss_pred HHHHHHHhhcCCCCchHHH
Q 037404 501 EVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~~ 519 (605)
++++.+++..|.+..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999998766544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.024 Score=50.65 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHhhh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc-CC
Q 037404 428 IDKGVQYFYSMERDYGILPQ---VEHYGCMIDLLGR-----SGRLKEALRLVQSM-PVEPN--AIIWGTLLGACRKH-NA 495 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-g~ 495 (605)
...|...++++.+ +.|+ ...|..++..|.+ -|+.++|.++|++. .+.|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3445555555544 2343 4456666666666 37777777777776 44452 45555566666663 77
Q ss_pred HHHHHHHHHHHHhhcCCC-CchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 496 VELAEEVLDCLIRLKGSD-PGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.++|.+.+++++...|.. |. +.+...+.-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 777777777777766553 33 12223334455555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.062 Score=55.67 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
...|...|+++.|+.+.++++...|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4557788999999999999999999999999999999999999999999999885
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.90 E-value=1.3 Score=36.30 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=84.6
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
.....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 344567777777776654 2567788888888889999999888887653 34444556667887776666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 400 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
-+.....| + ++....++...|+++++.++|.+..+ -|... ......|..+.|.++.++++
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 66555544 1 34445556678999999988876632 22211 11223566777777877764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.57 Score=36.92 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 462 GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 462 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
++.++|.++|+.+ ..+- ...|......-.++|++..|++++.+++...|.+...+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 5666666666655 1112 5666666666778888888888888888877765544433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.38 E-value=3 Score=38.06 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=109.1
Q ss_pred HHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHH----
Q 037404 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL---- 298 (605)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---- 298 (605)
.....|++-+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 22 ~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 34445666555554 55677778888888888888765 34456667777666664
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 037404 299 YDQMEEAGLKPDDGTLISILAACAESGLLG-LGMKVHASIN----KYR--FKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 371 (605)
++...+.+++++......++..+.....-+ .-..+.+.+. +.| ...++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 445556688899888888888776533211 1223333333 332 234778889999999999999999887763
Q ss_pred CCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 372 MTKKDLVSWNAMLYGLAMH---GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
-...++..+..++.-+... |...++- ...-. .+--|...|+...|..+++...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~R-aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSR-LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHH-HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222444444444333322 2222211 11111 12235567888888888887765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.01 E-value=7.5 Score=41.36 Aligned_cols=251 Identities=11% Similarity=-0.034 Sum_probs=136.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC--ccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCC--C-----CCHHHHHHHHH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAKT--LVP----WTIIISGYAEKGMAKEAARLYDQMEEAGL--K-----PDDGTLISILA 319 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~ 319 (605)
-+.+..|+.++++.++..-...+ ... -..+.-+....|..+++..++...+...- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888999888866421 112 23444556667776778888877765321 0 11111122222
Q ss_pred HHHccCc-hHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhH--HHHHHHHHHHcCCh
Q 037404 320 ACAESGL-LGLGMKVHASINKYRFKCNT--NVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVS--WNAMLYGLAMHGQG 393 (605)
Q Consensus 320 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~ 393 (605)
+.+..|. -+.+...+..+....-. .. ..-.++...++-.|+.+....++..+.+ .+... ...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 3333332 23445555554442211 11 1122344445566777777777665432 22222 23334455578999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFV---GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+.+..+++.+.... .|.. -|. .+..+|+..|+.....+++..+.. ....++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99998888887631 2222 232 344578899998887779988876 3333444444444555566776666777
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 037404 471 VQSMP--VEPNAIIWGTLLGACRKHNAV-ELAEEVLDCLIR 508 (605)
Q Consensus 471 ~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 508 (605)
++.+. ..|....-..+.-+....|.. .++...+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76552 233333333333333333332 567777777754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.84 E-value=12 Score=39.98 Aligned_cols=408 Identities=11% Similarity=0.062 Sum_probs=201.1
Q ss_pred HHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCHHHHHHHHHHHHHhC-
Q 037404 68 AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKCG- 145 (605)
Q Consensus 68 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 145 (605)
+.++|.++..| -|-.+++...+.++.+.+.++|..+... .|.. .|-..+. +.+.+.-.-...+.+.+....
T Consensus 221 l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFd-L~~~~~Q~fL~~v~~~l~~~e~ 293 (963)
T 4ady_A 221 SFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFD-LVSSASQQLLEILVTELTAQGY 293 (963)
T ss_dssp HHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHH-HhcccchHHHHHHHHhccccch
Confidence 55555555432 4666778888888999999999988642 1221 1211111 112111111111211111100
Q ss_pred ------CCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCee--hHHHHHHHHHhCCChhHH-HHHHh-hcCCC-Cc
Q 037404 146 ------YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV--SWNSMIAGLVKGGELSEA-RRLFD-EMPER-DA 214 (605)
Q Consensus 146 ------~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A-~~~~~-~~~~~-~~ 214 (605)
+-.+..+.......+.+.+..+...-..+-..+..++.. +-.++.+++...|-..+. +.... ++.+. +.
T Consensus 294 ~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~ 373 (963)
T 4ady_A 294 DPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNW 373 (963)
T ss_dssp CHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTH
T ss_pred hHHHHHHhCCCChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchH
Confidence 011111112222222232211332222221122222222 234566778877765443 22111 11111 21
Q ss_pred chHH-HHHHHHHcCCChHHHHHHHHhCCC----CCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC----------c
Q 037404 215 VSWN-TILDGYAKAGEMNLAFELFEKIPH----RNI--VSWSTMVWGYSKDGDMEMAKLLFDRMPA-KT----------L 276 (605)
Q Consensus 215 ~~~~-~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~ 276 (605)
.-+. ...-+....|+.+++..+++.... .+. ..-..+.-+.+..|..+++..++..... .+ +
T Consensus 374 ~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 374 AKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp HHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHH
Confidence 1122 223346678888888888887664 122 2233444455566665667776655332 22 0
Q ss_pred ccHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 037404 277 VPWTIIISGYAEKGM-AKEAARLYDQMEEAGLKPDDGTLI--SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 353 (605)
..-..+.-+++-.|. -+++.+.+..++... .+...... .+...+...|+.+....++..+.+.. +..+...++
T Consensus 454 r~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aa 529 (963)
T 4ady_A 454 LHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLA 529 (963)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHH
Confidence 112333334443443 246667777766532 11111122 33344567788888888887776532 333333333
Q ss_pred H--HHHhcCChHHHHHHHhcCC-CCChh-HHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 037404 354 D--MYAKCGSLDNAMSVFNGMT-KKDLV-SWN---AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426 (605)
Q Consensus 354 ~--~~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 426 (605)
. ++...|+.+.+..+++.+. ..++. -|. ++.-+|+..|+.....++++.+.... ..+......+.-++...|
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSS
T ss_pred HHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccC
Confidence 3 3446788888887777665 23332 233 34456778899877777888888642 223333333334455566
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL-KEALRLVQSMPVEPNAIIWGTLLGA 489 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~ 489 (605)
+.+.+..+++.+.+ ...|.+..-..+..+....|.. .++.+.+..+...+|..+-..-+.+
T Consensus 609 ~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 609 DYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp SCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 66666677766655 3345555444555555555543 6788888888545665544333333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.51 Score=38.04 Aligned_cols=28 Identities=4% Similarity=-0.071 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.-+.++.+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 5667899999999999999999987644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.40 E-value=3 Score=32.17 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=75.1
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 367 (605)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 456666666666666553 23444444444444444433333333333221 111 12344444444
Q ss_pred HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
.+-.+.. +.......+..+...|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.+ .|++
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~k 157 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KGEK 157 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhhH
Confidence 4333322 233445556667777777777777777543 2366777777777777777877777777777766 3543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.31 E-value=6.7 Score=36.00 Aligned_cols=167 Identities=12% Similarity=0.083 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF----SRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 33444557778888888887543 234456667766655544 555567888888888888777665
Q ss_pred cCCHH-HHHHHHHHhHH---hhC--CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037404 425 AGFID-KGVQYFYSMER---DYG--ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 425 ~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
...-+ .=..+++++++ +.| -.-++.....+...|.+.+++.+|...|- .+..+.+..+..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 54311 11223333332 123 22367777889999999999999999884 3444445666555555544433
Q ss_pred HHHHHHHHHhhcCCCCchHHH-HHHHHHhcCChHHHHHHHHHHHh
Q 037404 499 AEEVLDCLIRLKGSDPGNYTM-LSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
|.....+.. .+--|...|+...|..+++...+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222222 22346778899999887777664
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=91.85 E-value=5.4 Score=33.92 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=33.0
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (605)
++.......+..+.+.|..+..-.+.+.+..+|...-...+.++...++.+....+.+.+..++..+-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333334444444444433333333333333433333344444444443333333333444444444444444444444
Q ss_pred H
Q 037404 261 M 261 (605)
Q Consensus 261 ~ 261 (605)
.
T Consensus 111 ~ 111 (211)
T 3ltm_A 111 E 111 (211)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=91.64 E-value=5.5 Score=33.56 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=45.9
Q ss_pred hHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHH
Q 037404 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233 (605)
Q Consensus 154 ~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 233 (605)
...+..+...+ +.+....+.+.+..++.......+.++.+.|..+..-.+...+..++...-...+.++...++.+..
T Consensus 32 ~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 109 (201)
T 3ltj_A 32 RAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 109 (201)
T ss_dssp HHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH
Confidence 33333444444 3333333344443444444444445555555443333333333444444444444555554544333
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCC
Q 037404 234 FELFEKIPHRNIVSWSTMVWGYSKDGD 260 (605)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (605)
..+.+.+..++..+-...+.++.+.++
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 333444444444444444444444444
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=91.35 E-value=6.1 Score=33.57 Aligned_cols=153 Identities=11% Similarity=0.134 Sum_probs=80.5
Q ss_pred CcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCC
Q 037404 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228 (605)
Q Consensus 149 ~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 228 (605)
+..+....+..+...| +.+....+.+.+..+|.......+.++.+.|+.+..-.+.+.+..+|...-...+.++...+
T Consensus 32 ~~~vR~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp SHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3333344444444555 44444444444445555555566666666666544444444455566666666666676666
Q ss_pred ChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
+.+....+.+.+..++..+-...+.++...|+.+....+...+.+++...-...+.++...+. .++...+..+.+
T Consensus 110 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 655555555555567766666667777666664433334444433333333333444444443 344444444444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=0.71 Score=44.18 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK-----TRAQKPS 549 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 549 (605)
...++..+...|+++++...+..+...+|-+...+..++.+|.+.|+..+|++.|++..+ .|+.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345667777889999999999999999999888999999999999999999999988754 4766655
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.84 E-value=2.6 Score=32.96 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=51.8
Q ss_pred CCchHHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 445 LPQVEHYGCMIDLLGRSGRL---KEALRLVQSM-PVEP--NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
.|+..+--.+..++.+..+. .+++.++++. ...| ....+-.+.-++.+.|++++|+++.+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45555555566666666543 3566666665 2223 2345566778899999999999999999999999876544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.74 E-value=1.7 Score=33.46 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 446 PQVEHYGCMIDLLGRSGRL---KEALRLVQSM-PVEP--NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
|+..+--.+..++.+..+. .+++.++++. ...| ....+-.+.-++.+.|++++|+++.+.+++..|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4444444455555555543 3555666555 2223 2345566777888888888888888888888888765443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.68 E-value=14 Score=41.08 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=79.0
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Cc------------------
Q 037404 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK----TL------------------ 276 (605)
Q Consensus 219 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~------------------ 276 (605)
.++..+...+..+.+.++..... .+....-.+..+|...|++++|.+.|.+.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 45555666777777776655543 34444456777888889999998888775311 00
Q ss_pred --cc--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhH
Q 037404 277 --VP--WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348 (605)
Q Consensus 277 --~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 348 (605)
.+ |..++..+-+.+.++.+.++-+..++...+-+. ..|..+...+...|++++|...+-.+..... -...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~c 973 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSC 973 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHH
Confidence 00 455555666666666666665555543211111 1345555666666666666665555543322 2334
Q ss_pred HHHHHHHHHhcCChH
Q 037404 349 CNALVDMYAKCGSLD 363 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~ 363 (605)
...|+...|..|..+
T Consensus 974 Lr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhCCChh
Confidence 445555555554443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.67 E-value=1.5 Score=31.67 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.-+..+-++.+....+-|++......+++|.+.+++..|..+++.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445677777888888889999999999999999999999999999998854333 456776664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.36 E-value=10 Score=36.94 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=120.1
Q ss_pred CCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH----HHhc
Q 037404 289 KGMAKEAARLYDQMEEA-----GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM----YAKC 359 (605)
Q Consensus 289 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 359 (605)
.|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+..-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37889999888776643 234456678889999999999999888877765432221 2223333333 2223
Q ss_pred CC--hHHHHHHHhcCC---CCC--h-----hHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHh
Q 037404 360 GS--LDNAMSVFNGMT---KKD--L-----VSWNAMLYGLAMHGQGEKALGLFSRMKDE--GFGPD---KYTFVGVLCAC 422 (605)
Q Consensus 360 g~--~~~A~~~~~~~~---~~~--~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~ 422 (605)
.. .+.-..+.+.+. +.- . .....+...|...|++.+|.+++..+... |.... ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 233344444433 111 1 23456778899999999999999998753 32222 23466677889
Q ss_pred cccCCHHHHHHHHHHhHHhh-CCC--Cc--hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 423 THAGFIDKGVQYFYSMERDY-GIL--PQ--VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~-~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
...+++.+|..++.++.... ... |+ ...+...+..+...+++.+|.+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999875311 122 22 345667788888899999998887765
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.31 E-value=13 Score=33.94 Aligned_cols=168 Identities=10% Similarity=0.012 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL----FSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455557778888888887643 23445667777666554 4555567888888888887777655
Q ss_pred cCCHH-HHHHHHHHhHHh---hC--CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 037404 425 AGFID-KGVQYFYSMERD---YG--ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH---NA 495 (605)
Q Consensus 425 ~g~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 495 (605)
...-+ .=.++++++++- .| ..-++.....++..|.+.|++.+|...|-- +..-|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 112333333321 12 223677888899999999999999998863 3122455665555544444 54
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
..++--++-+ .+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 4433222222 12235577899999998887654
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.98 E-value=8.3 Score=32.23 Aligned_cols=104 Identities=8% Similarity=0.064 Sum_probs=66.8
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 465 KEALRLVQSM-PVEPNAIIWGTLLGACRK--HNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+++.+.|... ..+.|+..+..-+.-.-. .+....+..+|..+.... ...+..|...+..+...|++++|.++|+.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444 345565544333322222 445778888888887754 45566788888888999999999999988
Q ss_pred HHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
-++.+-+| .+.+......++..+.+.+++
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 88865433 235566666777777777663
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.65 E-value=2.8 Score=33.73 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
-.+..+|.+.|++++|+.+++.+
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCHHHHHHHHhcC
Confidence 33555555555555555555555
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.50 E-value=15 Score=33.75 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY----DQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++. +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45667778888888888887765 244566677766665554 555567888998888888887766
Q ss_pred cCchH-HHHHHHHHH----HHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHH
Q 037404 324 SGLLG-LGMKVHASI----NKYR--FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 324 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 396 (605)
...-+ .-..+.+.+ .+.| ...++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 55321 112233333 2333 345778888999999999999999988853222223455444443333322111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 397 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
++...-..++ -|...++...|..+++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1112222222 35566788888777666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.37 E-value=17 Score=34.38 Aligned_cols=162 Identities=11% Similarity=-0.008 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCC----CChhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhHH---
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKYRFK----CNTNVCNALVDMYAKCG-SLDNAMSVFNGMT---KKDLVSW--- 380 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~--- 380 (605)
.....+...|.+.|+.++..+++......-.. ........+++.+.... ..+.-.++..+.. ..+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777666666554321100 12233445555554432 2222222222222 0111122
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--H---HHHHHHHHHhcccCCHHHHHHHHHHhHHhh-CCCCchHHH
Q 037404 381 ---NAMLYGLAMHGQGEKALGLFSRMKDEGFGPD--K---YTFVGVLCACTHAGFIDKGVQYFYSMERDY-GILPQVEHY 451 (605)
Q Consensus 381 ---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 451 (605)
.-++..|...|++.+|.+++.++.+.=-+.| . ..+..-++.|...+++.++...+....... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1355666666666666666666655211111 1 223344455666666666666666554321 111222221
Q ss_pred H----HHHHHhh-hcCCHHHHHHHHHh
Q 037404 452 G----CMIDLLG-RSGRLKEALRLVQS 473 (605)
Q Consensus 452 ~----~l~~~~~-~~g~~~~A~~~~~~ 473 (605)
. .-+..+. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1223344 55666666665544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.35 E-value=4 Score=29.50 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=42.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
++.-+-.+..-|++.+..+.+++|.+.+++..|.++++-+...-.+...+|..++.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33333344667999999999999999999999999999888776555566666643
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.81 E-value=4.3 Score=29.15 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=41.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (605)
..+...|++++|..+.+.+..+++.+|.+|... +.|-.+++...+..+..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345677888888888888888888888766543 6777777777777777665 4444444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.20 E-value=2.8 Score=43.61 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 476 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
.+.+..-|..|+....+.+++++|.+.|+..+.. .-++..+..|.++|.+.+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~-RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA-RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcC
Confidence 3455667777777777778888888888887763 355667777778887766
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.11 E-value=1.3 Score=38.96 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=29.2
Q ss_pred hhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 458 LGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+.+.|++++|++..... +.. -|...-..++..+|-.|++++|..-++.+.+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44556666665555443 222 23334444555566666666666666666666555
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=5.9 Score=37.73 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH----hhCCCCchHH
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER----DYGILPQVEH 450 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 450 (605)
.++..+...|++++|+..+..+.... +.+...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777777777666542 33566677777777777777777777766543 3466666554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=85.64 E-value=15 Score=30.77 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=86.3
Q ss_pred ChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChh
Q 037404 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246 (605)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (605)
+...-..+++.+..+|.......+..+.+.|..+..-.+.+.+..+|...-...+.++...+..+....+.+.+..++..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~ 91 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 91 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33444445555556666666667777777776555555555555666665556666666666665555555666667777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
+-...+.++.+.++.+....+...+.+++...-...+.++...++. .+...+..+.. .++...-...+.++...|+
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7677777777777654444444444444443333344444444432 23333434332 2444444444555554444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.26 E-value=1.8 Score=38.12 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=23.2
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
.+.|.++++++....-++ .-+-|...-..|++.+|-.|++++|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444444444444444 33334444444555555555555554444433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.23 E-value=3.3 Score=31.74 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.-+..+-++.+....+-|++......+++|.+.+++..|..+++.++.+. .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 344566777777788889999999999999999999999999999998854 344556777664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.77 E-value=7.7 Score=27.87 Aligned_cols=88 Identities=15% Similarity=-0.008 Sum_probs=61.7
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
.++.+=.....-++|.-|-+.+...+. -...+. .-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+.
T Consensus 11 E~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~l-IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~ 86 (115)
T 2uwj_G 11 ELALAGSGQHCHEEALCIAEWLERLGQ-DEAARL-IRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAA 86 (115)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHH-HHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHH-HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHH
Confidence 333334444566777788888777664 222222 22345678999999999999999999999977754 57787888
Q ss_pred HHHHHHHHHhCC
Q 037404 99 AFRVFLDMQEKG 110 (605)
Q Consensus 99 a~~~~~~m~~~~ 110 (605)
+..-+.++..+|
T Consensus 87 le~rL~~la~sg 98 (115)
T 2uwj_G 87 LDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHhCC
Confidence 887777777765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=41 Score=34.15 Aligned_cols=170 Identities=8% Similarity=-0.045 Sum_probs=97.7
Q ss_pred CChHHHHHHHhcCCC---CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 360 GSLDNAMSVFNGMTK---KDLV----SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 360 g~~~~A~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
.+.+.|...+....+ .+.. .+..++..+...+...++...+.+.... .++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 478899998876641 2222 2333333344455456777777776553 344444445555556789999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
..|..+... ........-.+..++...|+.++|..+|+.+.... +|..++. ..+.|..-.. . .....+.
T Consensus 306 ~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~---~fYg~lA-a~~Lg~~~~~-~----~~~~~~~ 374 (618)
T 1qsa_A 306 TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR---GFYPMVA-AQRIGEEYEL-K----IDKAPQN 374 (618)
T ss_dssp HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SHHHHHH-HHHTTCCCCC-C----CCCCCSC
T ss_pred HHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---ChHHHHH-HHHcCCCCCC-C----CCCCChh
Confidence 999988551 12234445667788889999999999999984222 3333221 2223321000 0 0000010
Q ss_pred CCc-----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 513 DPG-----NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 513 ~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
... .-...+..+...|...+|...+..+.+
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 111 123345567788998888888777665
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=83.46 E-value=21 Score=32.00 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=9.2
Q ss_pred HhccCChhHHHHHhcc
Q 037404 59 LALCRQMGLAIKVFND 74 (605)
Q Consensus 59 ~~~~g~~~~A~~~~~~ 74 (605)
.+..|+.+-+..+++.
T Consensus 38 A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 38 AIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3455666666665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.31 E-value=7.4 Score=43.33 Aligned_cols=61 Identities=13% Similarity=-0.055 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-----NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
-|..++..+.+.|.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 3555566666667777777777766665432221 355556666667777777666655544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.06 E-value=8.1 Score=27.81 Aligned_cols=88 Identities=11% Similarity=-0.017 Sum_probs=60.5
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
.++.+=.....-++|.-|-+.+...+. -...+. .-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+.
T Consensus 12 E~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~l-IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~ 87 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQL-IRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSA 87 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHH-HHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHH-HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHH
Confidence 344444445566778888888777664 222222 22344678999999999999999999999987755 45677777
Q ss_pred HHHHHHHHHhCC
Q 037404 99 AFRVFLDMQEKG 110 (605)
Q Consensus 99 a~~~~~~m~~~~ 110 (605)
+..-+.++..+|
T Consensus 88 le~rL~~la~sg 99 (116)
T 2p58_C 88 LESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC
Confidence 777776776664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.45 E-value=11 Score=29.01 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
++.-+-.+..-|++.+..+.+++|.+.+++..|.++++-+...-.+...+|..++.
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33333344677999999999999999999999999999988876555666766643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.48 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.34 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.33 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.33 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.21 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.97 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.88 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.85 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.33 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.25 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.91 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.44 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.92 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.05 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.76 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.33 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.46 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.73 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.9e-21 Score=186.37 Aligned_cols=365 Identities=13% Similarity=0.095 Sum_probs=161.4
Q ss_pred HHHHHhcCCCChHHHHHHHhccCC--C-CeehHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCCh
Q 037404 157 IDSYSKCGVVGVSLAKKLFMSMGE--R-DIVSWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEM 230 (605)
Q Consensus 157 ~~~~~~~g~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~ 230 (605)
...+.+.| ++++|.+.++++.+ | +...+..+..++.+.|++++|+..|++. ..| +..++..+..++...|++
T Consensus 6 a~~~~~~G--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAG--DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 33444555 55555555555432 2 3344555555555555555555555554 122 233444455555555555
Q ss_pred HHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 231 NLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 231 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
++|...+....+ .+..............+....+........ .................+....+...+.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 555555444332 122222222222222222222222222111 11112233333334444444444444444443
Q ss_pred cCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHH
Q 037404 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWN 381 (605)
Q Consensus 305 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 381 (605)
.. +-+...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...+++.. +.+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 31 1223334444444445555555555555444432 1133444444455555555555555444333 22334444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
.+...+...|++++|+..|++..+.. +-+..++..+..++...|++++|.+.++.+.. ..+.+...+..++..+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHC
Confidence 44444555555555555555544421 11233444444445555555555555554444 2333444444444555555
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 462 GRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 462 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
|++++|++.|++. ...|+ ..++..++.++...|++++|+..++++++++|+++.++..++.+|.+.|
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 5555555555443 22232 3344444455555555555555555555555555555555555554444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.6e-21 Score=188.32 Aligned_cols=352 Identities=11% Similarity=0.028 Sum_probs=289.6
Q ss_pred HHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHH
Q 037404 189 MIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDME 262 (605)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 262 (605)
+...+.+.|++++|++.|+++ ..| +...+..+..++...|++++|...|+++.+ .+..++..+..+|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 456677889999999999998 344 466788888999999999999999998763 35678999999999999999
Q ss_pred HHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 037404 263 MAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339 (605)
Q Consensus 263 ~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (605)
+|...+......+... +..........+....+........... .................+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 9999998876543333 4445555556666677777666666553 33444555566667777888888888777766
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
.. +.+...+..+...+...|+++.|...+++.. +.+...|..+...+...|++++|+..+++....+ ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 3356778888999999999999999998765 4466788999999999999999999999988864 45667788
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHN 494 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g 494 (605)
.+..++.+.|++++|...++++.+ -.+.+...+..++..+...|++++|.+.++.. ..+.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 888999999999999999999987 34556788999999999999999999999887 33456778889999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
++++|+..++++++.+|+++.++..++.+|.+.|++++|++.++++.+..+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-14 Score=136.76 Aligned_cols=244 Identities=12% Similarity=0.005 Sum_probs=169.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (605)
+-.....+.+.|++++|+..|+++++.. +-+...+..+..++...|+++.|...+..+.+... -+...+..++.+|..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccc
Confidence 3456667788888888888888888753 22455666777777777777777777777766542 245566666666666
Q ss_pred cCChHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 037404 359 CGSLDNAMSVFNGMTKKDL---VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
.|++++|.+.++.....++ ..+....... ...+.......+..+...+...+|...+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 7777766666665432111 0000000000 0000001111122233445677788888
Q ss_pred HHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
.++.......++..++..++..+...|++++|...+++. ...| +...|..++.++...|++++|++.++++++.+|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 887764334456778888999999999999999999987 3334 47788999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 514 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+.++..++.+|.+.|++++|++.++++++..
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998853
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.1e-13 Score=130.03 Aligned_cols=269 Identities=14% Similarity=0.068 Sum_probs=197.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
.-.....+.+.|++++|...|+++.+.++ .+|..+..++...|++++|...|.+..+.. +-+...+..+..++...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 34567788999999999999999865443 458889999999999999999999998863 33467778888899999
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
|+++.|.+.++.+....... ............ ..+.......+..+...+.+.+|...+.+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999988754321 111100000000 0011111112223445566788888888877
Q ss_pred HCCC-CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHH
Q 037404 405 DEGF-GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAI 481 (605)
Q Consensus 405 ~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 481 (605)
+... .++...+..+...+...|++++|...++++... .+-+...|..++..|...|++++|.+.|+++ ...| +..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 6432 235677888888999999999999999999872 3446788999999999999999999999987 4344 467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----------hHHHHHHHHHhcCChHHHHHH
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-----------NYTMLSNIFAATGDWNKVANV 536 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 536 (605)
++..++.+|.+.|++++|+..|+++++++|+++. .+..+..++...|+.+.+...
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999999999999999999888765 345567777777777655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1e-09 Score=103.84 Aligned_cols=261 Identities=13% Similarity=-0.035 Sum_probs=170.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-----CChhHHHHHH
Q 037404 283 ISGYAEKGMAKEAARLYDQMEEAGLKPD----DGTLISILAACAESGLLGLGMKVHASINKYRFK-----CNTNVCNALV 353 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~ 353 (605)
...+...|++++|+.++++.++.....+ ...+..+..++...|++++|...+..+.+.... .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566666666666666665421111 123444555666667777777666665432111 0123345556
Q ss_pred HHHHhcCChHHHHHHHhcCC-------CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 037404 354 DMYAKCGSLDNAMSVFNGMT-------KK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF----GPDKYTFVGV 418 (605)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~~~~l 418 (605)
..+...|++..+...+.... .+ ....+..+...+...|+++.+...+.+...... .....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 66777777777777665432 11 113455566778888999999888888775321 2233455566
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCC-----chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILP-----QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-----PNAIIWGTLL 487 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~ 487 (605)
...+...++...+...+........... ....+..+...+...|++++|...+++. ... .....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 6677788888888888777655322211 1234566677788899999999999877 221 1234566678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh------cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 488 GACRKHNAVELAEEVLDCLIRL------KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++...|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999998754 2444567888999999999999999999988763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.1e-10 Score=105.10 Aligned_cols=91 Identities=13% Similarity=0.005 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 349 CNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
+..+..+|.+.|++++|...|++.. +.++.+|..+..+|...|++++|+..|+++.+.. +-+..++..+..++...
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHH
Confidence 3334444444555555555444433 2344445555555555555555555555555431 11233444444455555
Q ss_pred CCHHHHHHHHHHhHH
Q 037404 426 GFIDKGVQYFYSMER 440 (605)
Q Consensus 426 g~~~~a~~~~~~~~~ 440 (605)
|++++|...++...+
T Consensus 119 g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 555555555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=5.6e-10 Score=103.14 Aligned_cols=194 Identities=12% Similarity=0.136 Sum_probs=88.5
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhHHHHHHHHHHH
Q 037404 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG-SLDNAMSVFNGMT---KKDLVSWNAMLYGLAM 389 (605)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 389 (605)
++.+...+.+.+..++|.+.++.+++.+ +-+...|+....++...| ++++|+..+++.. +.+..+|..+...+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 3334444445555555555555555543 223444455555544443 2555555555443 2344455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC------
Q 037404 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR------ 463 (605)
Q Consensus 390 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 463 (605)
.|++++|+..++++.+.. +-+...|..+..++...|++++|++.++.+++ -.+.+...|+.+...+.+.+.
T Consensus 125 l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchhhh
Confidence 555555555555555431 12344555555555555555555555555544 122234444444444333332
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 464 LKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+++|++.+.++ ...| +...|..+...+. ....+++...++.+.++.|.
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTT
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCC
Confidence 34444444443 2222 2333433333322 22234444555555444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=5e-10 Score=100.76 Aligned_cols=221 Identities=10% Similarity=-0.037 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 037404 292 AKEAARLYDQMEEAGLKPD---DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368 (605)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 368 (605)
.+.++.-+.+........+ ..++..+..+|.+.|++++|...|+...+.. +-++.++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555566554321111 1345556667777888888888888877765 33677788888888999999999998
Q ss_pred HhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 369 FNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 369 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
|+++. +.+..++..+..+|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 88776 3456788888889999999999999999988753 23444444444455555655555555554443 22
Q ss_pred CchHHHHHHHHHhhhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 446 PQVEHYGCMIDLLGRSGR----LKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
+....+.. +..+..... .+.+...+... ...|+ ..++..++..+...|++++|...|++++..+|++...|.
T Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22222222 222222222 22222222221 12233 346677888999999999999999999999998865543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=8.1e-09 Score=97.44 Aligned_cols=285 Identities=10% Similarity=-0.011 Sum_probs=175.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---Cc-----ccHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 037404 252 VWGYSKDGDMEMAKLLFDRMPAK---TL-----VPWTIIISGYAEKGMAKEAARLYDQMEEAGL-KPD----DGTLISIL 318 (605)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll 318 (605)
...+...|++++|.+++++..+. +. ..+..+...+...|++++|+..|++..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34455556666666655543211 11 1244555666666777777766666554210 111 12334445
Q ss_pred HHHHccCchHHHHHHHHHHHH----cCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCC--------CChhHHHHH
Q 037404 319 AACAESGLLGLGMKVHASINK----YRFKCN---TNVCNALVDMYAKCGSLDNAMSVFNGMTK--------KDLVSWNAM 383 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 383 (605)
..+...|++..+...+..... .+.... ...+..+...+...|+++.+...+..... .....+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 566667777777776665542 111111 23445566777788888888877765441 122345556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC--CchHHHHHHH
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDE--GFGPD----KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL--PQVEHYGCMI 455 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~--g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~ 455 (605)
...+...+++..+...+.+.... ..... ...+..+...+...|++++|...++......... .....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 66777888888888888765542 11111 1234555667888999999999998876521111 1234566788
Q ss_pred HHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---------CCchHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS---------DPGNYT 518 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~ 518 (605)
..+...|++++|.+.++++ +..|+ ...+..+...+...|++++|.+.+++++++.+. ....+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~ 338 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 338 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 8999999999999998875 33343 346777889999999999999999999887432 122344
Q ss_pred HHHHHHHhcCChHHHHHH
Q 037404 519 MLSNIFAATGDWNKVANV 536 (605)
Q Consensus 519 ~l~~~~~~~g~~~~A~~~ 536 (605)
.+...+...|+.+++...
T Consensus 339 ~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 339 QQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhcCCChHHHHH
Confidence 555666777877777553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=6.2e-09 Score=95.90 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC-hhHHHHHHHHHHHcCChHHHHHHHHH
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KD-LVSWNAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
.+.+..++++..+...+.+...+...+..+...|+++.|..+|+++.. .+ ...|...+..+.+.|+++.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345555555555443344444555555555555666666665554431 12 12455555555555555556665555
Q ss_pred HHHCCCCCCHHHHHHHHH-HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCC
Q 037404 403 MKDEGFGPDKYTFVGVLC-ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVE 477 (605)
Q Consensus 403 m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 477 (605)
+.+.+. .+...|..... -+...|+.+.|..+|+.+... .+.+...|..++..+.+.|++++|..+|++. +..
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 554321 12222222221 122334555555555555542 2333445555555555555555555555543 122
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 478 PN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 478 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
|+ ...|...+..-...|+.+.+..+++++.+..|..
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 21 2344444444445555555555555555554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=9.3e-11 Score=110.09 Aligned_cols=230 Identities=8% Similarity=-0.046 Sum_probs=165.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--chHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG--LLGLGMKVHASINKYRFKCNTNVC-NALVDMYAKCGSLDN 364 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 364 (605)
..|.+++|+.+++...+.. +-+...+.....++...+ +++.+...+..+.+.... +...+ ......+...+..+.
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 3445778888888888753 334455555555555544 478888888888776533 34443 445577778899999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 365 AMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 365 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
|+..++.+.. .+...|+.+...+...|++++|...+++..+. .|+. ......+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH-
Confidence 9999998774 35678888888999999988877666544432 1221 1222334555666777777777766
Q ss_pred hCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
..+++...+..++..+...|+.++|...+.+. ...|+ ..++..++.++...|++++|...++++++++|.++..|..
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 44555666677788888889999999999887 54554 4577888899999999999999999999999998888888
Q ss_pred HHHHHHh
Q 037404 520 LSNIFAA 526 (605)
Q Consensus 520 l~~~~~~ 526 (605)
|+..+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8877753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.5e-09 Score=98.59 Aligned_cols=222 Identities=11% Similarity=0.106 Sum_probs=157.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMY 356 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (605)
|+.+...+.+.+.+++|+.+++++++. .|+ ...|.....++...| ++++|...++.+.+... -+..+|..+...+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHH
Confidence 566777788889999999999999985 454 456677777777766 58999999999888763 4678888889999
Q ss_pred HhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC------C
Q 037404 357 AKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG------F 427 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------~ 427 (605)
.+.|++++|+..++++. +.+...|..+...+...|++++|+..++++.+.+ +-+...|+.+..++.+.+ .
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence 99999999999999876 4577889999999999999999999999999853 235566766655554444 3
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc--CCHHHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLLGACRKH--NAVELAEE 501 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~--g~~~~A~~ 501 (605)
+++|++.+..+.+ ..+.+...|..+...+...| .+++.+.++.. +...+...+..++..|... +..+.+..
T Consensus 202 ~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 202 LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6788888888877 23446777777766655444 45666665544 3233455555555554321 33333444
Q ss_pred HHHHHH
Q 037404 502 VLDCLI 507 (605)
Q Consensus 502 ~~~~~~ 507 (605)
.++++.
T Consensus 279 ~~~ka~ 284 (315)
T d2h6fa1 279 ILNKAL 284 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=7.5e-09 Score=95.35 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=146.2
Q ss_pred CChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 360 g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
+..++|..+|++.. +.+...|...+..+...|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888887643 34667888889999999999999999999987543333457888899999999999999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHH-hhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 436 YSMERDYGILPQVEHYGCMIDL-LGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+.+.+ ..+.+...|...+.. +...|+.+.|..+|+.+ ..+.+...|...+..+...|+++.|+.+|+++++..|.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99977 334455555555544 34568999999999988 23345778999999999999999999999999998776
Q ss_pred CCc----hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 513 DPG----NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 513 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++. +|...+..-...|+.+.+.++++++.+.-
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 554 67788887788899999999999998753
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=6.4e-10 Score=104.24 Aligned_cols=246 Identities=7% Similarity=-0.059 Sum_probs=177.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHH-HH---HHHHH-------HHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDGT-LI---SILAA-------CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~-~~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (605)
..+..++|+.++.+.++. .|+..+ |+ .++.. +...|.++++..+++.+.+.. +.+...+..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 334457899999988874 466543 22 22222 233455778888888888765 33666777777776
Q ss_pred HhcC--ChHHHHHHHhcCC---CCChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHH
Q 037404 357 AKCG--SLDNAMSVFNGMT---KKDLVSWNA-MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430 (605)
Q Consensus 357 ~~~g--~~~~A~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 430 (605)
...+ ++++|...++++. +++...+.. ....+...+.+++|+..++++.+.+ +-+...|..+..++...|++++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 6665 4789999888775 345555543 4467777899999999999888753 2356778888888999998888
Q ss_pred HHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 431 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
|...+...... .|+ ...+...+...+..+++...+... ..+++...+..++..+...|+.++|...+.++.+
T Consensus 197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77666655441 111 112333445566667777777665 2233444566677778888999999999999999
Q ss_pred hcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 509 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+|.+..++..++.++...|++++|+++++++.+.
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.1e-08 Score=75.83 Aligned_cols=91 Identities=13% Similarity=0.039 Sum_probs=77.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 453 CMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
.-+..+.+.|++++|+..|+++ .. +.+...|..++.++...|++++|+..+.++++.+|.++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3466778888999999888887 33 345678888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 037404 531 NKVANVRLQMKKT 543 (605)
Q Consensus 531 ~~A~~~~~~~~~~ 543 (605)
++|+..+++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=2.1e-08 Score=85.78 Aligned_cols=114 Identities=8% Similarity=-0.159 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 037404 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLL 487 (605)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 487 (605)
|+...+......+.+.|++++|+..|.+++. -.+.+...|..++.+|.+.|++++|+..|+++ .+.|+ ...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 4555555556666666666666666666655 23345556666666666666666666666665 44443 44566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
.++...|++++|+..+++++++.|++...+...+..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 66666666666666666666665554444433333333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=5.8e-08 Score=74.22 Aligned_cols=105 Identities=14% Similarity=0.018 Sum_probs=89.5
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAV 496 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~ 496 (605)
...+...|++++|+..|..+++ -.+.+...|..++.+|.+.|++++|+..+.++ . .+.+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 4567788999999999999887 34557778999999999999999999999887 3 345677899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
++|+..++++++.+|+++.++..+..+-.
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999998888877643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.69 E-value=3.9e-08 Score=74.50 Aligned_cols=90 Identities=16% Similarity=-0.010 Sum_probs=81.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
-.++..+.+.|++++|...|++. ...| +...|..++.++.+.|++++|+..++++++++|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788999999999999998 3445 578999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 037404 530 WNKVANVRLQMK 541 (605)
Q Consensus 530 ~~~A~~~~~~~~ 541 (605)
+++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=4.2e-07 Score=76.35 Aligned_cols=141 Identities=10% Similarity=-0.059 Sum_probs=101.7
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
...+...|+++.|++.|.++.++++.+|..+..+|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778889999999988888888888888888889999999999998888753 335567888888888888888888
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
..|++... -.+.+... .+...|. ....+ ..++..+..++...|++++|.+.+.++.+..|
T Consensus 91 ~~~~kAl~--~~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALI--QLRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHH--TTTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--hCccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88888765 12222100 0000000 11112 34566778888899999999999999999887
Q ss_pred CC
Q 037404 512 SD 513 (605)
Q Consensus 512 ~~ 513 (605)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 75
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.9e-07 Score=78.57 Aligned_cols=119 Identities=9% Similarity=0.003 Sum_probs=97.4
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 498 (605)
.+...|+++.|++.|.++ .+|+..++..++.+|...|++++|++.|++. .+.| +...|..++.++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 467788888888888764 3467778888899999999999999999887 3334 46788889999999999999
Q ss_pred HHHHHHHHHhhcCCCC----------------chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 499 AEEVLDCLIRLKGSDP----------------GNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
|+..|++++...+.++ .++..++.++.+.|++++|.+.++++.+..
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999988655433 356789999999999999999999988754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.9e-07 Score=75.98 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=51.4
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+..|.+.|++++|+..|+++ ... .+...|..++.+|...|++++|+..++++++.+|.++.++..++.++...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 44455566666666665555 222 2344555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhC
Q 037404 533 VANVRLQMKKT 543 (605)
Q Consensus 533 A~~~~~~~~~~ 543 (605)
|...+++....
T Consensus 97 A~~~~~~a~~~ 107 (159)
T d1a17a_ 97 ALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=6.6e-08 Score=82.57 Aligned_cols=94 Identities=7% Similarity=-0.104 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMI 455 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 455 (605)
...+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+.+++ +.| +...|..++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~lg 79 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLG 79 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHHH
Confidence 3344444555566666666666666555532 22444555555566666666666666665543 223 344555566
Q ss_pred HHhhhcCCHHHHHHHHHhC
Q 037404 456 DLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~ 474 (605)
.+|.+.|++++|+..|+++
T Consensus 80 ~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 6666666666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.2e-07 Score=75.67 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=95.7
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNA 495 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 495 (605)
....|.+.|++++|+..|+++.+. .+.+...|..++.+|...|++++|.+.|+++ ...| +...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677899999999999998872 3557788889999999999999999999987 3344 56789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHH--HhcCChHHHHHH
Q 037404 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIF--AATGDWNKVANV 536 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 536 (605)
+++|...++++.+++|.++.++..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888877664 344556666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.5e-07 Score=71.94 Aligned_cols=107 Identities=13% Similarity=-0.048 Sum_probs=84.3
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR---LKEALRLVQSM-PVEPNA---IIWGTLLG 488 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 488 (605)
..++..+...+++++|.+.|+++.. --+.+..++..++.++.+.++ +++|+++++++ ...|+. .++..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3566777888899999999998887 345567888888888877554 45799999887 444443 36778899
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+|.+.|++++|++.|+++++++|++..+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999988776665554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=6.8e-07 Score=73.39 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+++.+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|+..|+++.+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44556666677777777777777777777777777777777777777777777777777663
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=5.8e-07 Score=81.48 Aligned_cols=191 Identities=8% Similarity=-0.092 Sum_probs=126.8
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHH
Q 037404 351 ALVDMYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---GPD--KYTFV 416 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~ 416 (605)
.....|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|...+++..+... .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345667788888888888876542 12 24778888889999999999998887654210 111 23455
Q ss_pred HHHHHhc-ccCCHHHHHHHHHHhHHhh---CCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-------CCH-HH
Q 037404 417 GVLCACT-HAGFIDKGVQYFYSMERDY---GILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-------PNA-II 482 (605)
Q Consensus 417 ~ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-------p~~-~~ 482 (605)
.+...|. ..|++++|++.++++.+-. +.++ ...++..++..+...|++++|.+.|+++ ... ... ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 4699999999998876421 1112 1345778899999999999999999886 111 111 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----hHHHHHHHHHh--cCChHHHHHHHHHHH
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-----NYTMLSNIFAA--TGDWNKVANVRLQMK 541 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~ 541 (605)
+...+..+...|+++.|...++++.+.+|..+. .+..++.++.. .+++++|+..|+++.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344556677889999999999999998875433 34455566554 356888888876444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.54 E-value=1e-06 Score=70.87 Aligned_cols=63 Identities=8% Similarity=-0.061 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++..++.+|.+.|++++|+..++++++.+|.++.+|..++.++...|++++|+..+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778889999999999999999999999999999999999999999999999999999984
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=1.1e-06 Score=79.57 Aligned_cols=173 Identities=10% Similarity=-0.048 Sum_probs=130.4
Q ss_pred ChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcccCCHHHHHHHH
Q 037404 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE----GFGPD-KYTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 361 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
++++|.++|. .....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4567776654 4577899999999999999987752 21222 257888899999999999999999
Q ss_pred HHhHHhhCCCC----chHHHHHHHHHhhh-cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 037404 436 YSMERDYGILP----QVEHYGCMIDLLGR-SGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEV 502 (605)
Q Consensus 436 ~~~~~~~~~~~----~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 502 (605)
+....-..-.. ...++..++..|.. .|++++|.+.++++ +..+. ..++..++..+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 98765221111 24456667777754 69999999999876 11121 34677889999999999999999
Q ss_pred HHHHHhhcCCCCc-------hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 503 LDCLIRLKGSDPG-------NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 503 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++++....|.++. .+...+.++...|+++.|...+++..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999998776653 34567777888999999999999998754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=2.5e-05 Score=69.25 Aligned_cols=150 Identities=15% Similarity=-0.006 Sum_probs=98.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----cCCH
Q 037404 390 HGQGEKALGLFSRMKDEGFGPDKYTFV-GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----SGRL 464 (605)
Q Consensus 390 ~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 464 (605)
..+.+.|...+++..+.|.......+. ..............+...+..... ..+...+..|...|.. ..+.
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred chhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccccc
Confidence 356677777777777665321111111 111112234456666676666544 2445566666666664 4567
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHHHHHH
Q 037404 465 KEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANV 536 (605)
Q Consensus 465 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~ 536 (605)
..+...++......+......+...+.. ..++++|...|+++.+. .++..+..|+.+|.+ ..+.++|.++
T Consensus 163 ~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 163 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred ccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 7777777766323466666667766665 56899999999999886 457788999999986 3489999999
Q ss_pred HHHHHhCCC
Q 037404 537 RLQMKKTRA 545 (605)
Q Consensus 537 ~~~~~~~~~ 545 (605)
+++..+.|.
T Consensus 241 ~~kAa~~g~ 249 (265)
T d1ouva_ 241 FKKGCKLGA 249 (265)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCcC
Confidence 999988763
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.7e-07 Score=70.55 Aligned_cols=92 Identities=10% Similarity=-0.038 Sum_probs=77.9
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCC--CchHHHHHHHH
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHN---AVELAEEVLDCLIRLKGSD--PGNYTMLSNIF 524 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 524 (605)
..++..+...+++++|.+.|++. .. +.+..++..++.++.+.+ ++++|+.+++++++.+|.+ +.++..+|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999998 33 456788889999998754 5567999999999987654 45889999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037404 525 AATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~ 543 (605)
.+.|++++|++.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999984
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.6e-06 Score=71.00 Aligned_cols=133 Identities=11% Similarity=-0.032 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (605)
.+......+.+.|++++|+..|.+.+..- |.. .+..+.-......+ ...+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 44455667777788888888887766531 100 00000000111111 123577788999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 459 GRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
.+.|++++|+..+++. .+.| +...+..++.++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 4445 6779999999999999999999999999999999999999998887776655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1e-06 Score=68.33 Aligned_cols=93 Identities=8% Similarity=0.050 Sum_probs=78.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-------hHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-------NYTML 520 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 520 (605)
.+..++..+.+.|++++|++.|++. ... .+...+..+..+|.+.|++++|+..++++++++|.++. +|..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3456788899999999999999887 333 45778999999999999999999999999999888775 45566
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 037404 521 SNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 521 ~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.++...|++++|++.+++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 7778888899999999998876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.34 E-value=6e-06 Score=67.39 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|+..++++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556667777777777777777777777777777777777777777777777777777763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.33 E-value=6e-06 Score=67.39 Aligned_cols=94 Identities=10% Similarity=-0.044 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
.+|..+..+|.+.|++++|+..+++. .. +.+...|..++.++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888999999999999999987 33 45677999999999999999999999999999999999999999888877
Q ss_pred cCChH-HHHHHHHHHHh
Q 037404 527 TGDWN-KVANVRLQMKK 542 (605)
Q Consensus 527 ~g~~~-~A~~~~~~~~~ 542 (605)
.+... ...+++.+|.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 76554 35566655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=2.4e-06 Score=70.06 Aligned_cols=64 Identities=5% Similarity=-0.105 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...+..+..++.+.|++++|+..+.++++++|.++.+|..++.+|...|++++|+..++++.+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4467778888999999999999999999999999999999999999999999999999999984
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1e-07 Score=93.69 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=51.0
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
+...+..+...+.+.|+.++|...+.+.- .++ ..++..++..+...|++++|+..|+++.+++|+++..|..||.++.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ------------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 44556666677777777777766655441 111 2356667777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 037404 526 ATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~~~~ 544 (605)
..|+..+|+..|.+.....
T Consensus 198 ~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS
T ss_pred HcCCHHHHHHHHHHHHhCC
Confidence 7777777777777777643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=5.8e-06 Score=67.64 Aligned_cols=133 Identities=8% Similarity=-0.061 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCC-CCchHHHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI-LPQVEHYGCMIDL 457 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~ 457 (605)
.+......+...|++++|+..|.+..+. .+ ........... . .+ +.....+..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~----------~~~~~~~~~~~------~----~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VE----------GSRAAAEDADG------A----KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHHSCHHHH------G----GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--hh----------hhhhhhhhHHH------H----HhChhhHHHHHHHHHH
Confidence 3445566677788888888888776541 00 00000000000 0 11 1245567888999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
+.+.|++++|+..++++ .+.| +...|..++.++...|++++|+..|+++++++|+++.+...+..+..+.....++
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 5445 4679999999999999999999999999999999999988888887655554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=6.9e-06 Score=65.77 Aligned_cols=128 Identities=9% Similarity=-0.104 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
..+......+.+.|++.+|+..|.+....- |. ............... ....+|..++.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-----------~~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-----------TEEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-----------CTTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-----------hhhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 345556677888888888888888877531 10 000000000000000 123467789999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
|.+.|++++|++.++++ .+.| +..+|..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999987 4344 678999999999999999999999999999999999888877766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.0012 Score=57.83 Aligned_cols=218 Identities=11% Similarity=-0.023 Sum_probs=108.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 037404 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356 (605)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (605)
.|...+...+++++|+..|++..+.| +...+..+...|.. ..+...+...+....+.+ ++.....+...+
T Consensus 7 ~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~ 80 (265)
T d1ouva_ 7 GLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 80 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccccc
Confidence 33444444455555555555554433 22223333333332 234444554444444433 222222233222
Q ss_pred Hh----cCChHHHHHHHhcCCCC-ChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---
Q 037404 357 AK----CGSLDNAMSVFNGMTKK-DLVSWNAMLYGLAM----HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH--- 424 (605)
Q Consensus 357 ~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--- 424 (605)
.. ..+.+.|...++...+. .......+...+.. ......+...+...... .+...+..+...+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSS
T ss_pred ccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCC
Confidence 22 23445555555443322 22222222222222 33455556666655543 244444445444443
Q ss_pred -cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 037404 425 -AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----SGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNA 495 (605)
Q Consensus 425 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 495 (605)
..+...+..+++...+ . .+......+...|.. ..+.++|..+|++....-++..+..|...|.. ..+
T Consensus 158 ~~~~~~~~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n 233 (265)
T d1ouva_ 158 TPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRN 233 (265)
T ss_dssp SCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCC
T ss_pred cccccccchhhhhcccc-c---cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccC
Confidence 4456667777766655 1 244555555555554 56788888888877222356666667777764 337
Q ss_pred HHHHHHHHHHHHhhcC
Q 037404 496 VELAEEVLDCLIRLKG 511 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p 511 (605)
.++|.+.|+++.+...
T Consensus 234 ~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 234 EKQAIENFKKGCKLGA 249 (265)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCcC
Confidence 8888888888877653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=1.9e-05 Score=64.67 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=78.1
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL-KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 497 (605)
.......|++++|.+.|.....-+.-.+-.. + ..+.+ .....-++. .....+..++..+...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 3456778888888888888765211111000 0 00100 000011111 12346677889999999999
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+|+..++++++.+|.+...|..++.+|.+.|++++|+..|+++.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999854
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.002 Score=57.84 Aligned_cols=276 Identities=13% Similarity=0.031 Sum_probs=119.0
Q ss_pred CCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 037404 47 RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126 (605)
Q Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 126 (605)
||..-...+.+.|-+.|.++.|..++..+.. |..++..+.+.++++.|.+++.+.. +..++..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 3444444455555566677777776664433 5566666666666666666655331 3445555555555
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHH
Q 037404 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEAR 203 (605)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 203 (605)
.......+. +...+...++.....++..|-..| ..+....+++.... .+...++.++..|++.+ .++..
T Consensus 81 ~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~--~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 81 DGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRG--YFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred hCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 544433321 111122223333445666666666 66666666664432 34445666666666543 23333
Q ss_pred HHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHH
Q 037404 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283 (605)
Q Consensus 204 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 283 (605)
+.+... .+......++..|-+.+-+++ ++..|.+.|+++.|..+.-.-.. +.......+
T Consensus 153 e~l~~~--s~~y~~~k~~~~c~~~~l~~e------------------lv~Ly~~~~~~~~A~~~~i~~~~-~~~~~~~f~ 211 (336)
T d1b89a_ 153 EHLELF--WSRVNIPKVLRAAEQAHLWAE------------------LVFLYDKYEEYDNAIITMMNHPT-DAWKEGQFK 211 (336)
T ss_dssp HHHHHH--STTSCHHHHHHHHHTTTCHHH------------------HHHHHHHTTCHHHHHHHHHHSTT-TTCCHHHHH
T ss_pred HHHHhc--cccCCHHHHHHHHHHcCChHH------------------HHHHHHhcCCHHHHHHHHHHcch-hhhhHHHHH
Confidence 333322 111222233444444443333 33344445555555444333110 111123334
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHH-----------HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 037404 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGT-----------LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352 (605)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-----------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 352 (605)
..+.+..+.+...++....++. .|+... ...++..+.+.+++.....++......+ +..+.+++
T Consensus 212 e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al 286 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESL 286 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHH
T ss_pred HHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHH
Confidence 4444445544444444433332 222110 1223333344444455555555444433 23456666
Q ss_pred HHHHHhcCChHHHHH
Q 037404 353 VDMYAKCGSLDNAMS 367 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~ 367 (605)
...|...++++.-+.
T Consensus 287 ~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 287 NNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHhCcchhHHHHH
Confidence 666666665544333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.01 E-value=2.2e-05 Score=58.77 Aligned_cols=86 Identities=5% Similarity=-0.130 Sum_probs=40.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..++++.+ -.+.+...+..++..|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCC
Confidence 334444555555555555554432 11334444445555555555555555555444 122234444444555555555
Q ss_pred HHHHHHHHH
Q 037404 464 LKEALRLVQ 472 (605)
Q Consensus 464 ~~~A~~~~~ 472 (605)
+++|.+.++
T Consensus 100 ~~~A~~~l~ 108 (112)
T d1hxia_ 100 ANAALASLR 108 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.00097 Score=59.95 Aligned_cols=271 Identities=12% Similarity=0.033 Sum_probs=157.9
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
..+..+...|.++.|..+|..+ .-+..++..+.+.++++.|.+++.+.. +..+|..+..++.+......
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp ----------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHH
Confidence 4466777779999999998853 346678888999999999999887654 56688889999888866544
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhcc
Q 037404 99 AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178 (605)
Q Consensus 99 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~ 178 (605)
+ .+.......++.....++..+-..|.+++...+++..... -..+...++.|+..|++.+ .+...+.+...
T Consensus 88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~---~~kl~e~l~~~ 158 (336)
T d1b89a_ 88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK---PQKMREHLELF 158 (336)
T ss_dssp H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC---hHHHHHHHHhc
Confidence 3 2233334456667778889999999999999999877542 2456667889999999875 44444444443
Q ss_pred CCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCC------------CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChh
Q 037404 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246 (605)
Q Consensus 179 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (605)
. +......++..|-+.+-++++.-++.++... +.......+..+.+.++.+...++.....+.++.
T Consensus 159 s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~ 236 (336)
T d1b89a_ 159 W--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 236 (336)
T ss_dssp S--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred c--ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHH
Confidence 2 2233344555666666666665555555322 2222223333344444433332222221111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
..+.++......-+. .-++..+.+.++.......++...+.| +....+++...|...++
T Consensus 237 ~i~~lL~~v~~~~d~------------------~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d 295 (336)
T d1b89a_ 237 LLNDLLMVLSPRLDH------------------TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 295 (336)
T ss_dssp GHHHHHHHHGGGCCH------------------HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCH------------------HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcch
Confidence 223333333333333 334455555666666777776665544 34567777888888887
Q ss_pred hHHHHH
Q 037404 327 LGLGMK 332 (605)
Q Consensus 327 ~~~a~~ 332 (605)
++.-..
T Consensus 296 ~~~l~~ 301 (336)
T d1b89a_ 296 YQALRT 301 (336)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 654433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.97 E-value=2.5e-05 Score=62.72 Aligned_cols=89 Identities=11% Similarity=-0.025 Sum_probs=67.6
Q ss_pred HHHhhhcCCHHHHHHHHHhC----CCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------
Q 037404 455 IDLLGRSGRLKEALRLVQSM----PVEP----------NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------- 513 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~----~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------- 513 (605)
+..+...|++++|++.|++. +..| ....|+.+..+|...|++++|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44455667777777766655 1112 13578888999999999999999999999864321
Q ss_pred ----CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 514 ----PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 514 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..++..++.+|...|++++|++.|+++.+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235788999999999999999999999874
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=3e-05 Score=55.88 Aligned_cols=64 Identities=14% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-------PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...+-.++..+.+.|++++|+..++++++..|.+ ..++..++.++.+.|++++|+..++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4445578899999999999999999999986544 346889999999999999999999999984
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.88 E-value=1.9e-05 Score=62.36 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=47.7
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 464 LKEALRLVQSM-PVEP-NAIIWGTLLGACRKHN-----------AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
+++|++.|+++ .+.| +..+|..++.+|...| .+++|.+.|+++++++|++...+..|+...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~------ 130 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA------ 130 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH------
Confidence 34555555554 2223 3445555555554433 468899999999999999987777776553
Q ss_pred HHHHHHHHHHHhCC
Q 037404 531 NKVANVRLQMKKTR 544 (605)
Q Consensus 531 ~~A~~~~~~~~~~~ 544 (605)
.|.+++.++.++|
T Consensus 131 -ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 131 -KAPQLHAEAYKQG 143 (145)
T ss_dssp -THHHHHHHHHHSS
T ss_pred -HHHHHHHHHHHHh
Confidence 5666666666655
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=3.6e-05 Score=55.40 Aligned_cols=74 Identities=8% Similarity=-0.082 Sum_probs=57.8
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM----P----VEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+-.++..+.+.|++++|...|+++ + ..++ ..++..++.++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345666777777777777777655 1 1223 568889999999999999999999999999999999888876
Q ss_pred HHH
Q 037404 522 NIF 524 (605)
Q Consensus 522 ~~~ 524 (605)
...
T Consensus 88 ~~~ 90 (95)
T d1tjca_ 88 YFE 90 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.85 E-value=1.4e-05 Score=63.16 Aligned_cols=84 Identities=7% Similarity=-0.025 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 460 RSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRK----------HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
+.+.+++|.+.|+.. .. +.++..+..++.++.. .+.+++|+..++++++++|+++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 444455555555555 22 2234455555544442 34568999999999999999999999999999887
Q ss_pred CC-----------hHHHHHHHHHHHhC
Q 037404 528 GD-----------WNKVANVRLQMKKT 543 (605)
Q Consensus 528 g~-----------~~~A~~~~~~~~~~ 543 (605)
|+ +++|.+.|+++.+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhccccc
Confidence 64 68899999988874
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00011 Score=56.36 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=29.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
.+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++.+++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34445555555555555555555532 22344455555555555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=8.3e-06 Score=79.75 Aligned_cols=127 Identities=9% Similarity=-0.090 Sum_probs=49.8
Q ss_pred CChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
+.++.|+..+.... .++...+..+...+.+.|+.++|...+.+..... | ..++..+...+...|++++|...|+
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44455555444333 2233444555555555566665555554443311 1 2344445555555666666666666
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACR 491 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 491 (605)
++.+ -.+.+...|+.|+..+...|+..+|...|.+. -.+|...++..|...+.
T Consensus 177 ~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 177 HAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6554 22334455566666666666666666655554 22344455555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.67 E-value=9.6e-05 Score=64.62 Aligned_cols=129 Identities=10% Similarity=-0.055 Sum_probs=87.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .+-+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 345788999999999888863 346678888888899999999999999988762 22234555555555555555554
Q ss_pred HHHHHHhC--CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 467 ALRLVQSM--PVEPNA-IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 467 A~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
+..-.... ...|+. ..+...+..+...|+.++|.+.++++.+..|..+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 43333222 122332 33444456677889999999999999998888776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.60 E-value=0.00049 Score=54.77 Aligned_cols=92 Identities=11% Similarity=-0.036 Sum_probs=58.4
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCc----------hHHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCC----
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQ----------VEHYGCMIDLLGRSGRLKEALRLVQSM--------PVEPN---- 479 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---- 479 (605)
+...|++++|+..|++.++-..-.|+ ...|+.+..+|.+.|++++|.+.+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 44445555555555555442211121 245666777777777777777666654 11222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 480 -AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 480 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
...+..++.+|...|++++|...|++++++.|..
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2256778899999999999999999999986543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.33 E-value=7.6e-05 Score=65.27 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=87.6
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 499 (605)
..+.|++++|+..+++.++ ..+.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999988 56678899999999999999999999999998 45565 44555555555444333333
Q ss_pred HHHHHHHHhh-cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 500 EEVLDCLIRL-KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 500 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.......... .|++...+...+..+...|+.++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2221111111 233334455667888999999999999999988653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=0.0031 Score=51.06 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH----hhCCCCchHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER----DYGILPQVEH 450 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 450 (605)
...+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+..+|++.|+.+.. ..|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456677778888888888888888888753 33667788888888888888888888887643 3577777654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.0041 Score=45.66 Aligned_cols=65 Identities=9% Similarity=-0.059 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 478 PNAIIWGTLLGACRKHN---AVELAEEVLDCLIRLKGSDP-GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
|...+--..++++.++. +.++++.+++++.+.+|.+. ..++.|+.+|.+.|++++|+..++++.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45555556667776553 45678888888887777553 6777888888888888888888888877
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.37 Score=45.02 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037404 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306 (605)
Q Consensus 251 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 306 (605)
.+..+.+.++++.....+..-. .+...-.....+....|+...|...+..+-..|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3445555666655554443211 111112344455555666666666555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.18 E-value=0.035 Score=41.95 Aligned_cols=82 Identities=7% Similarity=-0.076 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHHH
Q 037404 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKV 533 (605)
Q Consensus 462 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 533 (605)
.+.++|.+++++....-++.....|...|.. ..+.++|.++++++.+. .++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHH
Confidence 4555666666555212234444445544443 34678888888887764 455667778887766 3578888
Q ss_pred HHHHHHHHhCCC
Q 037404 534 ANVRLQMKKTRA 545 (605)
Q Consensus 534 ~~~~~~~~~~~~ 545 (605)
.+++++..+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 888888887664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.92 E-value=0.17 Score=36.36 Aligned_cols=140 Identities=10% Similarity=0.055 Sum_probs=97.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
+...|..++..+++.+.... .+..-|+.++.-....-+-+-..+.++.+-.- .| ...++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~----FD----------ls~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh----cC----------chhhhcHHH
Confidence 44567888888888877763 34555666665555555555566666665331 11 134555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
....+-.++ .+...++..+.....+|+-+.-.+++..+.+....+|..+..++.+|.+.|...++-+++.++=+.|.
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 555555554 24445566678888899999988998888887777788999999999999999999999999888775
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.05 E-value=0.22 Score=37.29 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (605)
|+++|+.+|++..+.|.. . ....+. .....+.+++...++...+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 556677777776665522 1 111111 122334555555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.2 Score=36.42 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHhhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 446 PQVEHYGCMIDLLGRSG---RLKEALRLVQSM-PVEP-NA-IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
++..+-=.++.++.+.. +.++++.++++. ...| +. ..+..+.-+|.+.|++++|.++++++++++|.+..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 44444445556666543 456788888776 2234 33 466778888999999999999999999999998765443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.80 E-value=1.5 Score=31.36 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
.....++....+|+-++-.++++.+.+.+ +|++.....+..+|-+.|...++.+++.++.+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34455666777777777777777766643 67777777777778888887777777777766
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.33 E-value=0.8 Score=31.09 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.-++.+-++.+....+-|++....+.+++|.+.+++..|..+++.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4456777777777888899999999999999999999999999999887543 34556666553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.46 E-value=10 Score=34.56 Aligned_cols=347 Identities=10% Similarity=-0.007 Sum_probs=176.8
Q ss_pred HHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc-C--CCCcchHHHHHHHHHcCCChHHH
Q 037404 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-P--ERDAVSWNTILDGYAKAGEMNLA 233 (605)
Q Consensus 157 ~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~--~~~~~~~~~ll~~~~~~~~~~~a 233 (605)
+..+.+.+ +.......+...+ .+...-.....+....|+.+.|...+..+ . ......+..+...+...|.+
T Consensus 79 l~~L~~~~--~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~l--- 152 (450)
T d1qsaa1 79 VNELARRE--DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ--- 152 (450)
T ss_dssp HHHHHHTT--CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS---
T ss_pred HHHHHhcc--CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCC---
Confidence 34445555 5555444333221 23333445556666777777776666655 1 12233334444433333322
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 037404 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313 (605)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 313 (605)
+...+-.-+......|++..|..+...+..........++..... ...+.... .. ..++...
T Consensus 153 ----------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~--~~~~~~~ 214 (450)
T d1qsaa1 153 ----------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RT--TGATDFT 214 (450)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HH--SCCCHHH
T ss_pred ----------CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hc--CCCChhh
Confidence 222222334445556777777777666543332223333333322 12221111 11 1222222
Q ss_pred HHHHHHHHHc--cCchHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHH
Q 037404 314 LISILAACAE--SGLLGLGMKVHASINKYRFKCNTNV---CNALVDMYAKCGSLDNAMSVFNGMT--KKDLVSWNAMLYG 386 (605)
Q Consensus 314 ~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~ 386 (605)
...+..++.+ ..+.+.+...+.............. ...+...+...+..+.+...+.... ..+.....-.+..
T Consensus 215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~ 294 (450)
T d1qsaa1 215 RQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM 294 (450)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH
Confidence 2222222222 2456666666666554332211111 1112222334455666666655433 2233333334445
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
....+++..+...+..|... ..-...-..-+.+++...|+.+.|...|..+.. .++ -|..|... +.|..-
T Consensus 295 al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~- 364 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY- 364 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC-
T ss_pred HHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC-
Confidence 56778999999888877532 122344456677889999999999999998854 233 33333321 222100
Q ss_pred HHHHH-HhCCCCCCHH-H---HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 467 ALRLV-QSMPVEPNAI-I---WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 467 A~~~~-~~~~~~p~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.+- ...+..+... . -...+..+...|....|...+..+.+.. ++.-...++.+..+.|.++.|+....+..
T Consensus 365 --~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 365 --ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp --CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred --CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 000 0011111111 1 1123456778899999999998887643 45567788999999999999998877664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.73 E-value=2.8 Score=28.37 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=38.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 473 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
.+..-|++.+..+.+++|.+.+++..|.++++-....-..+...|..+.
T Consensus 34 ~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 34 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456799999999999999999999999999988876544455666554
|