Citrus Sinensis ID: 037407

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNEGEERPLLNSVVTDSSSGKLIREVFSTF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccEEEEEEEEccccccHHHHHHHHccccEEEEEEccEEEEEEccccccEEEEEEcccccccccccccEEcccEEEccEEcccEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHcEEEEEEccccccEEEEEEEEccccccHHHHHHHccccccEEEEccccEEEEEcccccccEEEEEccccccccHccccEEcccEEccccccccEEEccEEEEEEEccccccEEEEEEcccEEEEEEEEccccccccccccccHccccccccccccHHHcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maptvkpksLFLLHLAISFQIFLItskstdaapvpapwppqfhAILFMnnsgtlqkvdlwydwpngrnfniIQNQLGKLtydlewdngtsYIYTldankecrvlhfpvgilrpswldgAEYLGQKYVDKFLCNVWTKVDFIWYYEdvvtkrpvhwafytgytadvITFEVgavledpkwqapvycfgnegeerpllnsvvtdsssgkLIREVFSTF
Flexible Loop (DISEMBL)
maptvkpkSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNegeerpllnsvvtdsssgklirevfstf
Low Complexity Region (SEG)
MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNEGEERPLLNSVVTDSSSGKLIREVFSTF
Disordered region (IsUnstruct)
********SLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNEG**************************
Disordered Region (DISOPRED)
********SLFLLHLAISFQIFLITSK***AAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGN*******************LIREVFST*
Disordered Region (DISEMBL)
MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNEGEERPLLNSVVTDSSSGKLIREVFSTF
Disordered Region (DISPRO)
***TVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNE******LNS****SSSGKLIREVFSTF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNEGEERPLLNSVVTDSSSGKLIREVFSTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q67YC9	206	Uncharacterized protein A	no	no	0.810	0.849	0.666	3e-67

>sp|Q67YC9|Y4141_ARATH Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1

 Score =  254 bits (649), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 134/177 (75%), Gaps = 2/177 (1%)

Query: 15  LAISFQIFLITSKSTDAA--PVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNII 72
           + I   I++       AA  PVP PWP QFHA++FMN SG L  +DLWYDW NGRNFNII
Sbjct: 8   IVIVIFIYITAGVKIAAADEPVPTPWPHQFHALMFMNYSGDLSMIDLWYDWTNGRNFNII 67

Query: 73  QNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLC 132
           Q QLG +TYDLEW+NGTS+ YTLD +K CR     VGILRP+WLDGA+YLGQ+ V  FLC
Sbjct: 68  QEQLGGITYDLEWNNGTSFFYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLC 127

Query: 133 NVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNE 189
           NVW KVDFIWYYEDV TKRPV W FYTG  A ++T+EVGAVLED KWQAPVYCF  E
Sbjct: 128 NVWEKVDFIWYYEDVETKRPVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
224136354	219	predicted protein [Populus trichocarpa]	0.972	0.958	0.697	3e-79
118489234	219	unknown [Populus trichocarpa x Populus d	0.972	0.958	0.697	5e-79
317106610	218	JHL07K02.7 [Jatropha curcas]	0.972	0.963	0.680	2e-76
224057858	159	predicted protein [Populus trichocarpa]	0.736	1.0	0.786	9e-72
359473842	218	PREDICTED: uncharacterized protein At4g1	0.865	0.857	0.663	3e-71
18403878	194	uncharacterized protein [Arabidopsis tha	0.875	0.974	0.664	4e-71
297835420	195	hypothetical protein ARALYDRAFT_479891 [	0.847	0.938	0.666	3e-70
351726510	222	uncharacterized protein LOC100306330 pre	0.981	0.954	0.606	3e-70
255543252	208	transferase, transferring glycosyl group	0.759	0.788	0.737	5e-70
296085543	228	unnamed protein product [Vitis vinifera]	0.861	0.815	0.655	3e-69

>gi|224136354|ref|XP_002322309.1| predicted protein [Populus trichocarpa] gi|118484722|gb|ABK94230.1| unknown [Populus trichocarpa] gi|222869305|gb|EEF06436.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 170/215 (79%), Gaps = 5/215 (2%)

Query: 1   MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLW 60
           M   VK  SL +L LA S     ++SK  D  P PAPWP QFH+ILFM+N+G+LQ VDLW
Sbjct: 1   MGSKVKSLSLLILPLAFSLCFSSLSSKPAD--PTPAPWPHQFHSILFMDNNGSLQVVDLW 58

Query: 61  YDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAE 120
           YDW NGRNFNIIQNQLGKL YDLEWDNGTSYIYTLD+NKECRVLHFPVG+LRP+WL+GA 
Sbjct: 59  YDWTNGRNFNIIQNQLGKLLYDLEWDNGTSYIYTLDSNKECRVLHFPVGVLRPNWLEGAT 118

Query: 121 YLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQ 180
           +LGQ+ VD FLCNVW KVDFIWYYEDV+TKRPV+W FYTG TA V+TFEVGAVLEDPKWQ
Sbjct: 119 HLGQQEVDGFLCNVWQKVDFIWYYEDVITKRPVYWVFYTGMTAHVMTFEVGAVLEDPKWQ 178

Query: 181 APVYCFGNEGEERPLLNSVVTDSSSGKLIREVFST 215
           APVYCF  E E++   N+V+    S  L RE   T
Sbjct: 179 APVYCF-KESEKKE--NTVIKSVVSHGLSREGLMT 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489234|gb|ABK96423.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489750|gb|ABK96676.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 169/215 (78%), Gaps = 5/215 (2%)

Query: 1   MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLW 60
           M   VK  SL +L LA S     ++SK  D  P PAPWP QFH+ILFM+N+G+LQ VDLW
Sbjct: 1   MGSKVKSLSLLILPLAFSLCFSSLSSKPAD--PTPAPWPHQFHSILFMDNNGSLQVVDLW 58

Query: 61  YDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAE 120
           YDW NGRNFNIIQNQLGKL YDLEWDNGTSYIYTLD+NKEC VLHFPVG+LRP+WL+GA 
Sbjct: 59  YDWTNGRNFNIIQNQLGKLLYDLEWDNGTSYIYTLDSNKECSVLHFPVGVLRPNWLEGAT 118

Query: 121 YLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQ 180
           YLGQ+ VD FLCNVW KVDFIWYYEDV+TKRPV+W FYTG TA V+TFEVGAVLEDPKWQ
Sbjct: 119 YLGQQEVDGFLCNVWQKVDFIWYYEDVITKRPVYWVFYTGMTAHVMTFEVGAVLEDPKWQ 178

Query: 181 APVYCFGNEGEERPLLNSVVTDSSSGKLIREVFST 215
           APVYCF  E E++   N+V+    S  L RE   T
Sbjct: 179 APVYCF-KESEKKE--NTVIKSVVSHGLSREGLMT 210

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106610|dbj|BAJ53117.1| JHL07K02.7 [Jatropha curcas]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/219 (68%), Positives = 166/219 (75%), Gaps = 9/219 (4%)

Query: 1   MAPTVKPKSLFL--LHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNS-GTLQKV 57
           MA  +KP S  L  L L   F +F + SK+ D  P PAPWP QFH+ILFMN+S G LQ  
Sbjct: 1   MASVIKPVSFSLQVLLLLSFFIVFSVASKTAD--PTPAPWPLQFHSILFMNDSTGQLQVT 58

Query: 58  DLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLD 117
           DLWYDWPNGRNFNIIQNQLGKL YDLEWDNGTSY YTLD+N+EC+V HFPVGILRP++LD
Sbjct: 59  DLWYDWPNGRNFNIIQNQLGKLLYDLEWDNGTSYYYTLDSNQECKVRHFPVGILRPNFLD 118

Query: 118 GAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDP 177
           GA YLGQK VD FLCNVW KVDFIWYYEDVVTKRPV+W FYTG    V+TFEVGAVLED 
Sbjct: 119 GATYLGQKQVDGFLCNVWEKVDFIWYYEDVVTKRPVYWVFYTGMVIHVMTFEVGAVLEDE 178

Query: 178 KWQAPVYCFGNEGEERPLLNSVVTDSSSGK---LIREVF 213
           KWQAPVYCF  E    P++ S+ T  S G    L+R  F
Sbjct: 179 KWQAPVYCF-KENNPYPVIESLSTVGSGGSFRGLMRGAF 216

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057858|ref|XP_002299359.1| predicted protein [Populus trichocarpa] gi|222846617|gb|EEE84164.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (703), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 137/159 (86%)

Query: 30  DAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGT 89
           +  P PAPWP QFHAILFMN SGTLQK+DLWYDW NGRNFNIIQ+QLGKL YDLEW+NGT
Sbjct: 1   EGDPTPAPWPHQFHAILFMNYSGTLQKIDLWYDWTNGRNFNIIQHQLGKLMYDLEWNNGT 60

Query: 90  SYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVT 149
           S+ YTLD+NKEC   H  VGILRP+WLDGA YLGQ++VD FLCNVW KVDFIWYYEDV+T
Sbjct: 61  SFFYTLDSNKECSTAHLEVGILRPNWLDGANYLGQRHVDGFLCNVWEKVDFIWYYEDVIT 120

Query: 150 KRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGN 188
           KRPV+W FYTG  A V+TFEVGA LED KWQAPVYCFGN
Sbjct: 121 KRPVYWVFYTGREAHVMTFEVGAALEDAKWQAPVYCFGN 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473842|ref|XP_002272515.2| PREDICTED: uncharacterized protein At4g14100 [Vitis vinifera]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 145/187 (77%)

Query: 1   MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLW 60
           MA   K  ++ ++ L     +   +SKSTD  P PAPWPPQF+++L+MN +G+ Q +DLW
Sbjct: 1   MASATKHPAILIVFLIHCLCLSRSSSKSTDLTPTPAPWPPQFYSLLYMNVNGSNQIIDLW 60

Query: 61  YDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAE 120
           YDWP GRN NIIQNQLGK  YDLEWDNGTS+ YTLD+ +ECR  HF VGILRP WLDGA 
Sbjct: 61  YDWPKGRNLNIIQNQLGKRLYDLEWDNGTSFFYTLDSTQECRTKHFEVGILRPDWLDGAH 120

Query: 121 YLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQ 180
           YLGQ+ VD FLCNVW KVDFIWYYEDVVTKRPVHW F+ G +A V+TF+ GAV ED KWQ
Sbjct: 121 YLGQREVDGFLCNVWEKVDFIWYYEDVVTKRPVHWRFFNGMSAHVMTFKEGAVREDEKWQ 180

Query: 181 APVYCFG 187
           APVYCFG
Sbjct: 181 APVYCFG 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403878|ref|NP_566739.1| uncharacterized protein [Arabidopsis thaliana] gi|21593856|gb|AAM65823.1| unknown [Arabidopsis thaliana] gi|332643289|gb|AEE76810.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 151/191 (79%), Gaps = 2/191 (1%)

Query: 4   TVKPKSLFLLHLAISFQIFLITSKSTD--AAPVPAPWPPQFHAILFMNNSGTLQKVDLWY 61
            +KP   F++ L +   +    S  T+    PVPA WP QFHA++ MN SG+L+ VDLWY
Sbjct: 2   VLKPIHSFIVILLLVLSVGDKISAGTEPEKEPVPAVWPEQFHALMLMNKSGSLEIVDLWY 61

Query: 62  DWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEY 121
           DW NGRNFNIIQ QLGKLTYDLEW+NGTS+ YTLDA+K CR +HF VGILRP+WLDGA+Y
Sbjct: 62  DWVNGRNFNIIQKQLGKLTYDLEWNNGTSFYYTLDASKTCRTVHFEVGILRPNWLDGAKY 121

Query: 122 LGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQA 181
           +GQ++V+ FLCNVW KV+F+WYYEDVVTKRPV W FYTG  A V+TFEVGAVLED KWQA
Sbjct: 122 MGQRHVNGFLCNVWEKVEFLWYYEDVVTKRPVQWIFYTGREAHVMTFEVGAVLEDEKWQA 181

Query: 182 PVYCFGNEGEE 192
           PVYCF NE +E
Sbjct: 182 PVYCFHNEKKE 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835420|ref|XP_002885592.1| hypothetical protein ARALYDRAFT_479891 [Arabidopsis lyrata subsp. lyrata] gi|297331432|gb|EFH61851.1| hypothetical protein ARALYDRAFT_479891 [Arabidopsis lyrata subsp. lyrata]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 122/183 (66%), Positives = 146/183 (79%)

Query: 10  LFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNF 69
           + LL L+   +   +     +  PVPA WP QFHA++ MN SG L+ VDLWYDW NGRNF
Sbjct: 11  VILLVLSAGDKTAAVNEPELEMEPVPAVWPEQFHALMLMNKSGALEIVDLWYDWVNGRNF 70

Query: 70  NIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDK 129
           NIIQ QLGKLTYDLEW+NGTS+ YTLDA++ CR +HF VGILRP+WLDGA+YLGQ++V+ 
Sbjct: 71  NIIQKQLGKLTYDLEWNNGTSFYYTLDASRTCRTVHFEVGILRPNWLDGAKYLGQRHVNG 130

Query: 130 FLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNE 189
           FLCNVW KV+F+WYYED+VTKRPV W FYTG  A V+TF+VGAVLED KWQAPVYCF NE
Sbjct: 131 FLCNVWEKVEFLWYYEDIVTKRPVQWIFYTGREAHVMTFDVGAVLEDEKWQAPVYCFHNE 190

Query: 190 GEE 192
            +E
Sbjct: 191 KKE 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726510|ref|NP_001237129.1| uncharacterized protein LOC100306330 precursor [Glycine max] gi|255628221|gb|ACU14455.1| unknown [Glycine max]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 158/216 (73%), Gaps = 4/216 (1%)

Query: 1   MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLW 60
           MA   +      + L  S    ++++ +    P+PA WP QFHA++FMN SGTLQK+DLW
Sbjct: 1   MASAREQIYFLAIVLLFSHSKLMLSNAAITGEPIPAEWPHQFHALMFMNQSGTLQKLDLW 60

Query: 61  YDWPNGRNFNIIQNQLGKL-TYDLEWDNGTSYIYTLDANK-ECRVLHFPVGILRPSWLDG 118
           YDWPNGRNFNIIQNQL  L TYDLEW+NGTS++YTLD ++  C+VLH  VGILRP+WL G
Sbjct: 61  YDWPNGRNFNIIQNQLDHLVTYDLEWNNGTSFVYTLDPSEPTCQVLHVEVGILRPNWLHG 120

Query: 119 AEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPK 178
           A YLGQ++V  FLCNVW KVDFI YYEDV+T+RPV W FYTGYTA V+TFEVGAVLEDP 
Sbjct: 121 ATYLGQQHVGNFLCNVWEKVDFIVYYEDVLTRRPVKWVFYTGYTAHVMTFEVGAVLEDPN 180

Query: 179 WQAPVYCFGNEGEER--PLLNSVVTDSSSGKLIREV 212
           WQAPVYCF   G+E   P+L   V   S   L+R +
Sbjct: 181 WQAPVYCFSENGKENNSPILRHGVPVGSLESLMRGI 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543252|ref|XP_002512689.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223548650|gb|EEF50141.1| transferase, transferring glycosyl groups, putative [Ricinus communis]

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 135/164 (82%)

Query: 23  LITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYD 82
           LI S +    P PAPWP QFHAILFMN SG L+K+DLWYDW NGRNFNIIQ+QLG + YD
Sbjct: 17  LIRSPAEGGEPAPAPWPHQFHAILFMNKSGILEKIDLWYDWTNGRNFNIIQHQLGDVLYD 76

Query: 83  LEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKVDFIW 142
           LEW+NGTS+ YTLD+NKEC      VGILRP+WLDGA+YLGQ++VD FLCNVW KVDFIW
Sbjct: 77  LEWNNGTSFFYTLDSNKECSSAQLEVGILRPNWLDGAKYLGQRHVDGFLCNVWEKVDFIW 136

Query: 143 YYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCF 186
           YYEDVVTKRPVHW FY+G  A V+TFEVGA LED  WQAPVYCF
Sbjct: 137 YYEDVVTKRPVHWVFYSGREAHVMTFEVGAALEDANWQAPVYCF 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085543|emb|CBI29275.3| unnamed protein product [Vitis vinifera]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 140/186 (75%)

Query: 1   MAPTVKPKSLFLLHLAISFQIFLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLW 60
           M    K  S+  + + +   ++   S S    P P PWP QFH+ILFMN SG L+ +DLW
Sbjct: 9   MTSATKHTSIVFVFVFLILCVWFSVSSSKSTDPTPTPWPHQFHSILFMNYSGALEIIDLW 68

Query: 61  YDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAE 120
           YDWPNGRNFNI+Q+QLG+L YDLEW+NGTS++YTLDA   C      VGILRP+WLDGA 
Sbjct: 69  YDWPNGRNFNIMQDQLGELVYDLEWNNGTSFVYTLDAPNRCHTAQLEVGILRPNWLDGAN 128

Query: 121 YLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQ 180
           YLGQ  VD FLCN+W KVDFIWYYEDVVTKRPVHW FYTG TA V+TFEVGAVLED KWQ
Sbjct: 129 YLGQHQVDGFLCNLWEKVDFIWYYEDVVTKRPVHWRFYTGRTAHVMTFEVGAVLEDTKWQ 188

Query: 181 APVYCF 186
           APVYCF
Sbjct: 189 APVYCF 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2095218	194	AT3G23760 "AT3G23760" [Arabido	0.870	0.969	0.668	4.3e-70
TAIR|locus:2831548	206	AT4G14100 "AT4G14100" [Arabido	0.810	0.849	0.666	4.1e-65

TAIR|locus:2095218 AT3G23760 "AT3G23760" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 127/190 (66%), Positives = 151/190 (79%)

Query:     5 VKPKSLFLLHLAISFQIFLITSKSTDAA--PVPAPWPPQFHAILFMNNSGTLQKVDLWYD 62
             +KP   F++ L +   +    S  T+    PVPA WP QFHA++ MN SG+L+ VDLWYD
Sbjct:     3 LKPIHSFIVILLLVLSVGDKISAGTEPEKEPVPAVWPEQFHALMLMNKSGSLEIVDLWYD 62

Query:    63 WPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYL 122
             W NGRNFNIIQ QLGKLTYDLEW+NGTS+ YTLDA+K CR +HF VGILRP+WLDGA+Y+
Sbjct:    63 WVNGRNFNIIQKQLGKLTYDLEWNNGTSFYYTLDASKTCRTVHFEVGILRPNWLDGAKYM 122

Query:   123 GQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAP 182
             GQ++V+ FLCNVW KV+F+WYYEDVVTKRPV W FYTG  A V+TFEVGAVLED KWQAP
Sbjct:   123 GQRHVNGFLCNVWEKVEFLWYYEDVVTKRPVQWIFYTGREAHVMTFEVGAVLEDEKWQAP 182

Query:   183 VYCFGNEGEE 192
             VYCF NE +E
Sbjct:   183 VYCFHNEKKE 192

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2831548 AT4G14100 "AT4G14100" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 118/177 (66%), Positives = 134/177 (75%)

Query:    15 LAISFQIFLITSKSTDAA--PVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNII 72
             + I   I++       AA  PVP PWP QFHA++FMN SG L  +DLWYDW NGRNFNII
Sbjct:     8 IVIVIFIYITAGVKIAAADEPVPTPWPHQFHALMFMNYSGDLSMIDLWYDWTNGRNFNII 67

Query:    73 QNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLC 132
             Q QLG +TYDLEW+NGTS+ YTLD +K CR     VGILRP+WLDGA+YLGQ+ V  FLC
Sbjct:    68 QEQLGGITYDLEWNNGTSFFYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLC 127

Query:   133 NVWTKVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPKWQAPVYCFGNE 189
             NVW KVDFIWYYEDV TKRPV W FYTG  A ++T+EVGAVLED KWQAPVYCF  E
Sbjct:   128 NVWEKVDFIWYYEDVETKRPVQWIFYTGREAHIMTYEVGAVLEDEKWQAPVYCFNKE 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.459    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      216       216   0.00088  112 3  11 22  0.36    33
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  215 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.63u 0.15s 17.78t   Elapsed:  00:00:01
  Total cpu time:  17.63u 0.15s 17.78t   Elapsed:  00:00:01
  Start:  Sat May 11 12:24:24 2013   End:  Sat May 11 12:24:25 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.2475.1 SubName- Full=Putative uncharacterized protein; (164 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
PF00811	133	Ependymin: Ependymin; InterPro: IPR001299 Ependymi	96.97
PF14371	89	DUF4412: Domain of unknown function (DUF4412)	96.9
smart00026	191	EPEND Ependymins. Ependymins are the predominant p	94.71

>PF00811 Ependymin: Ependymin; InterPro: IPR001299 Ependymins are secretory proteins found predominantly in the cerebrospinal fluid of teleost fish [, ]

Probab=96.97  E-value=0.01  Score=47.81  Aligned_cols=99  Identities=26%  Similarity=0.435  Sum_probs=69.3

Q ss_pred             ecCCeeEEEecCCccceeeeccCccCCCCCcc-ccceecCeeeeCce-------eeeeeeecC--cEEEEEeeccC---C
Q 037407           85 WDNGTSYIYTLDANKECRVLHFPVGILRPSWL-DGAEYLGQKYVDKF-------LCNVWTKVD--FIWYYEDVVTK---R  151 (216)
Q Consensus        85 w~NgTsfy~~l~~~~~Cr~~~~~vGiL~PdWL-~gA~YlG~~~v~G~-------~C~vW~K~d--fi~Yyedv~t~---r  151 (216)
                      .+.|+.|-+++ ++++|+...... -.+|-=+ ++|+|+|+..+++-       ..+.|...-  .--.|.-..|.   .
T Consensus        19 y~eg~~Y~Id~-~~~~C~k~~L~~-~f~~~~IP~nAt~~g~~~lG~~~~~~~gl~v~~w~~~~~~~~g~y~~~~t~~gCi   96 (133)
T PF00811_consen   19 YNEGVMYEIDL-KNGSCTKSPLTG-PFHPFCIPPNATFLGQFYLGSSSIPGDGLLVDSWSGKVPDGSGIYSITVTEFGCI   96 (133)
T ss_pred             ccCCcEEEEEC-CCCcEeEEECCC-CcccccCCCCCEEEEEEEeCCCCCCCCcEEEEEeccCccCCceEEEEEccCCCEE
Confidence            35788888885 678999988763 4444434 69999999988776       999999553  32455544442   8


Q ss_pred             ceEEeeeCCccceEE--EEecCCcCCC-CCCcccccc
Q 037407          152 PVHWAFYTGYTADVI--TFEVGAVLED-PKWQAPVYC  185 (216)
Q Consensus       152 PVrw~F~~G~~~hvm--tFevGavleD-~~wqaP~YC  185 (216)
                      ||+-.|+.....+++  -|++=.-|+| +.|..|++|
T Consensus        97 PV~~~~~~~~~~~~~~~f~nvt~gI~DP~vF~pP~~C  133 (133)
T PF00811_consen   97 PVSESFYGEKSGWVTTSFFNVTIGIKDPSVFDPPSFC  133 (133)
T ss_pred             EEEEEEECCCCcEEEEEEEeeEEcCCChhhcCCCCCC
Confidence            999998865554333  3444444655 699999999

A bound form of the glycoproteins is associated with the extracellular matrix, probably with collagen fibrils, that may be the functional form of ependymins []. The proteins bind calcium via N-linked sialic acid residues. The molecular function of ependymins appear to be related to cell contact phenomena involving the extracellular matrix [].; GO: 0005509 calcium ion binding, 0007160 cell-matrix adhesion, 0005576 extracellular region

>PF14371 DUF4412: Domain of unknown function (DUF4412)

Probab=96.90  E-value=0.0032  Score=45.76  Aligned_cols=64  Identities=16%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             eecCeeeeCceeeeeeee--cC-----cEEEEEe------------eccCCceEEeeeCCccce---EEEEecCCcCCCC
Q 037407          120 EYLGQKYVDKFLCNVWTK--VD-----FIWYYED------------VVTKRPVHWAFYTGYTAD---VITFEVGAVLEDP  177 (216)
Q Consensus       120 ~YlG~~~v~G~~C~vW~K--~d-----fi~Yyed------------v~t~rPVrw~F~~G~~~h---vmtFevGavleD~  177 (216)
                      +=+|+++|+|+.|+.|.-  .+     .+|+-.|            -..+.|||..-.++...-   +...+.+.+ +++
T Consensus         2 ~~tGt~tI~G~~c~ky~v~~~~~~~~~~~W~t~d~~~~~~~~~~~~~~~G~pl~~~~~~~~~~~~~~~~~i~~~~~-~~~   80 (89)
T PF14371_consen    2 TKTGTKTIAGYKCEKYEVTMDGGGVTMEVWITKDGAGSLQKAQELKKLKGFPLKTESTDNGGGMEMEVTSIKRGPV-PAS   80 (89)
T ss_pred             eECCCEEECCEEeEEEEEEecCCCeEEEEEEcCCccchhhhhhhhccCCCeEEEEEEeCCCcEEEEEEEEeEEcCC-Chh
Confidence            347999999999999993  33     4666666            225799998766432222   788889986 999


Q ss_pred             CCccccc
Q 037407          178 KWQAPVY  184 (216)
Q Consensus       178 ~wqaP~Y  184 (216)
                      +|++|+-
T Consensus        81 ~F~iP~g   87 (89)
T PF14371_consen   81 LFEIPAG   87 (89)
T ss_pred             HcCCCCC
Confidence            9999973

>smart00026 EPEND Ependymins

Probab=94.71  E-value=0.74  Score=40.27  Aligned_cols=149  Identities=19%  Similarity=0.274  Sum_probs=86.8

Q ss_pred             chhhhheeee-cCCC-CCcceeeeeeCCCCcc-hhhhhhhh-cCeeeee--eecCCeeEEEecCCccceeeeccCccCCC
Q 037407           39 PPQFHAILFM-NNSG-TLQKVDLWYDWPNGRN-FNIIQNQL-GKLTYDL--EWDNGTSYIYTLDANKECRVLHFPVGILR  112 (216)
Q Consensus        39 P~qFHa~l~~-N~~G-~l~~~dlyYDwp~gRn-~niiq~Ql-~~~lyD~--Ew~NgTsfy~~l~~~~~Cr~~~~~vGiL~  112 (216)
                      |+|+...+.+ ..+| .......=||=-|.|- |=-....+ ..-.||+  ..+-|.-|=+++ .+++|+......- -+
T Consensus         6 P~~~eg~~~v~~~~~~~~a~g~~sYD~~nkr~R~~E~~~~~n~t~~~d~L~lf~eGv~Y~id~-kn~sC~K~~L~~~-~h   83 (191)
T smart00026        6 PPLTSGTMKVASTGGHDLASGEFSYDSKAKKLRFVEDTMHANKTSHLDVLIHFEEGVFYDIDS-KNQSCKKETLQSR-KH   83 (191)
T ss_pred             chhceeEEEEEeCCCceEEEEEEEeccCCCEEEEEecccccCCceeeEEEEEecCCcEEEEec-CCCceeeeecCCC-cc
Confidence            6677766665 2333 4556678899999987 21111222 2344553  346788777764 6789976654322 22


Q ss_pred             CCcc-ccceecCeeeeC-------ceeeeeeee-c-CcEEEEEeeccC---CceEEeeeCCccceEE-EEecCCcCCC-C
Q 037407          113 PSWL-DGAEYLGQKYVD-------KFLCNVWTK-V-DFIWYYEDVVTK---RPVHWAFYTGYTADVI-TFEVGAVLED-P  177 (216)
Q Consensus       113 PdWL-~gA~YlG~~~v~-------G~~C~vW~K-~-dfi~Yyedv~t~---rPVrw~F~~G~~~hvm-tFevGavleD-~  177 (216)
                      |-=+ ++|+++|+-.++       |..+++|.. . +..-+|.-..|.   -||.=.|++..+.-.- -|+|=.-|.| +
T Consensus        84 p~eIP~nAT~~ge~~lGs~~~~~~Gl~v~~W~g~~p~~~g~y~~~~T~~gCiPVs~~~~~~~~~~~~~Ffdv~~gI~DP~  163 (191)
T smart00026       84 LLEIPPDATHESELYLGSPTIQEQGLRVRVWNGKVPELHGHYSLSTTSCGCLPLSGSYSTDKKDLLFSFFGVETEVKDPE  163 (191)
T ss_pred             cccCCCCCceEEEEEecCCCCCcCCEEEEEecCcCCCcCccEEEEEecCCEEEEEEEEEeccceEEEEEEeeEeccCCcc
Confidence            2212 589999988884       899999953 2 333344443343   6998766542111111 1233222444 5


Q ss_pred             CCcccccccCCC
Q 037407          178 KWQAPVYCFGNE  189 (216)
Q Consensus       178 ~wqaP~YCf~~~  189 (216)
                      .|-.|++|..-.
T Consensus       164 vFiPP~~C~~~~  175 (191)
T smart00026      164 VFVPPSYCEGVA  175 (191)
T ss_pred             ccCCccccCCcc
Confidence            999999998643

Ependymins are the predominant proteins in the cerebrospinal fluid (CSF) of teleost fish. They have been implicated in the neurochemistry of memory and neuronal regeneration. They are glycoproteins of about 200 amino acids that can bind calcium. Four cysteines are conserved that probably form disulfide bonds.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00