Citrus Sinensis ID: 037409
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 603 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.877 | 0.878 | 0.347 | 1e-98 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.920 | 0.896 | 0.356 | 2e-98 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.878 | 0.863 | 0.349 | 3e-97 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.883 | 0.836 | 0.353 | 9e-97 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.936 | 0.898 | 0.337 | 5e-96 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.910 | 0.852 | 0.349 | 9e-96 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.883 | 0.858 | 0.359 | 6e-95 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.829 | 0.793 | 0.353 | 8e-95 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.878 | 0.835 | 0.342 | 2e-93 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.860 | 0.823 | 0.338 | 3e-92 |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 186/535 (34%), Positives = 319/535 (59%), Gaps = 6/535 (1%)
Query: 53 DRHKSG--NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN 110
+R +SG +I ++A+ F MI+ +P P + F+ + +A+ KQ++ V+ K+L N
Sbjct: 58 ERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELN 117
Query: 111 GLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEA 170
G+ +++ LN++INC C+ T A+ VLG++++ + P+T TFN LI GL EG++ EA
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 171 ARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSI 230
L ++ C P+VVT+N+++NG+CR+ +T +AL L +M K DV TY++I
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN---VKADVFTYSTI 234
Query: 231 IDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGV 290
ID LC+DG +D A L +M+ + I +V+TYNSL+ G C W + L +M+ +
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294
Query: 291 QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350
P+V+TFN +++ K+GK+ + N L + MI RG++P+ +TYN+LMDG+C+ R+S A
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354
Query: 351 LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLF 410
+ MV C D+ ++ LI C ++V+D + ++R + + + +TY+ L+ G
Sbjct: 355 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414
Query: 411 QVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE 470
Q G + A +L +M + V+PD T+ +DGLC NG + +A+++F+ ++ K +L I
Sbjct: 415 QSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIV 474
Query: 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM 530
Y +I G+CK G+++ A LF L KG P+V+T + MI LCK+G + +AN LL M
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534
Query: 531 EAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585
E P++ T+ TL+R +++ + L+ +M + +D S V+D+L
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF-SADASSIKMVIDML 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 212/595 (35%), Positives = 324/595 (54%), Gaps = 40/595 (6%)
Query: 40 HFKDGTSIAKFLNDRHKSG--NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQY 97
H+ T +R ++G +I N+A+ F+ MI+ +P P F L + +A+ KQY
Sbjct: 27 HYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQY 86
Query: 98 DTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157
D V+ K + NG+ D++ + ++INC C+ AF VLGR + + P+T+TF+ L
Sbjct: 87 DLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTL 146
Query: 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217
+NG C EGR+ EA L ++ P++VT +TLINGLC AL L + MV E+G
Sbjct: 147 VNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV-EYG 205
Query: 218 -------------AICK--------------------PDVVTYNSIIDGLCKDGFVDKAK 244
+CK VV Y+ +ID LCKDG D A
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265
Query: 245 ELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYN 304
L +M+ + I +V+TY+SLI G C W + + EM+ + PDVVTF+A+I+
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Query: 305 CKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDV 364
K+GK+ + L MI RG+ PDT+TYNSL+DGFC + A ++F MVSKGC D+
Sbjct: 326 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDI 385
Query: 365 YSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDK 424
+Y+ILIN+ CK ++V+D + L+RE+ S+ + P+ ITYNTL+ G Q G L A +L +
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445
Query: 425 MQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGR 484
M V P T+ +DGLC NG + +A+++F+ ++ + L I YN +I+G+C +
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505
Query: 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCT 544
+ A LF L KG PDVVT + MI LCK+G + +A+ L M+ C P + T+
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 565
Query: 545 LLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSK---DKKYRECLN 596
L+R + + V L+ +M +D S V+D+LS DK + + L+
Sbjct: 566 LIRAHLGGSGLISSVELIEEMKVCGF-SADSSTIKMVIDMLSDRRLDKSFLDMLS 619
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 200/572 (34%), Positives = 318/572 (55%), Gaps = 42/572 (7%)
Query: 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLL 122
+EAV F M+K +P P + F+ LL+ +AK K++D V+S +++ G+ +L+ N++
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106
Query: 123 INCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC 182
INCLC+ S A +LG++++ + P+ VT N L+NG C RI EA L ++
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 166
Query: 183 DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDG---- 238
P+ VTF TL++GL + A+ L E MV + C+PD+VTY ++I+GLCK G
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG---CQPDLVTYGAVINGLCKRGEPDL 223
Query: 239 -------------------------------FVDKAKELLLQMKDRNINPNVITYNSLIC 267
VD A L +M ++ I P+V TY+SLI
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 268 GFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP 327
C W +A L +M++ + P+VVTFN++I+ K+GK+ + +L + MIQR ++P
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLY 387
+ VTYNSL++GFC+ R+ A+++F MVSK C DV +YN LIN CK +KV D + L+
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447
R+M + + +TY TL+ G FQ + +A + +M + V P+ T+ T +DGLCKN
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC 507
G + +A+ VF+ ++ K E I TYN + G+CK G+++ LF L KG PDV+
Sbjct: 464 GKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523
Query: 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567
+TMI CK+G ++A L + M+ +P T+ TL+R +++ K+ L+ +M +
Sbjct: 524 NTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583
Query: 568 EKLVVSDLSLSSKVVDLLSK---DKKYRECLN 596
+ D S V D+L DK + E L+
Sbjct: 584 CRF-AGDASTYGLVTDMLHDGRLDKGFLEVLS 614
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 203/574 (35%), Positives = 316/574 (55%), Gaps = 41/574 (7%)
Query: 53 DRHKSG--NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN 110
+R +SG +I +++A+ F MI +P P + F+ L + +AK KQYD V++L K++
Sbjct: 58 ERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELK 117
Query: 111 GLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEA 170
G+ +L+ L+++INC C+ AF +G+I++ + PNT+TF+ LINGLC EGR+ EA
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 177
Query: 171 ARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNS- 229
L ++ P+++T NTL+NGLC + A+ L ++MV E+G C+P+ VTY
Sbjct: 178 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV-EYG--CQPNAVTYGPV 234
Query: 230 ----------------------------------IIDGLCKDGFVDKAKELLLQMKDRNI 255
IIDGLCK G +D A L +M+ + I
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 294
Query: 256 NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNR 315
N+ITYN LI GFC W + L +M+ + P+VVTF+ +I+ K+GK+ +
Sbjct: 295 TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEE 354
Query: 316 LLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANC 375
L + MI RG+ PDT+TY SL+DGFC + +A ++ MVSKGC ++ ++NILIN C
Sbjct: 355 LHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYC 414
Query: 376 KDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSF 435
K +++D + L+R+M + +TYNTL+ G ++G L A +L +M V P+
Sbjct: 415 KANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIV 474
Query: 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495
T+ +DGLC NG +A+++F+ I K EL I YN +I+G+C ++ A LF L
Sbjct: 475 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534
Query: 496 QHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555
KG P V T + MI LCK+G + +A L ME P T+ L+R + +
Sbjct: 535 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDA 594
Query: 556 SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK 589
+K V L+ ++ V D S V+D+LS +
Sbjct: 595 TKSVKLIEELKRCGFSV-DASTIKMVIDMLSDGR 627
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 205/607 (33%), Positives = 333/607 (54%), Gaps = 42/607 (6%)
Query: 28 RPPNPKTDLSSHHFKDGTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTIL 87
R +P L +F + + R+ ++ ++AV F M++ +P P + F L
Sbjct: 27 RKASPLFSLRGVYFSAASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKL 86
Query: 88 LTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCF 147
L+ +AK ++D V+SL +R+ + + DL+ N+LINC C+ A VLG++++ +
Sbjct: 87 LSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY 146
Query: 148 TPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALK 207
P+ VT + L+NG C RI EA L ++ V PN VTFNTLI+GL A+
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 206
Query: 208 LFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELL-------------------- 247
L + MV C+PD+ TY ++++GLCK G +D A LL
Sbjct: 207 LIDRMVARG---CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIID 263
Query: 248 ---------------LQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP 292
+M ++ I PNV+TYNSLI C W +A L +M++ + P
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 323
Query: 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELF 352
+VVTF+A+I+ K+GK+ + +L + MI+R ++PD TY+SL++GFC+ R+ A+ +F
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 383
Query: 353 VSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412
M+SK C +V +YN LI CK ++VE+ + L+REM + + +TYNTL+ GLFQ
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 443
Query: 413 GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETY 472
G+ A K+ KM + V PD T++ +DGLCK G + +A+ VF+ ++ K E I TY
Sbjct: 444 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503
Query: 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532
N +I G+CK G+++ LF L KG P+V+ +TMI C++G ++A+ L +M+
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563
Query: 533 KNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSK---DK 589
+P+ T+ TL+R +++ K+ L+ +M + V D S S V+++L +K
Sbjct: 564 DGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGF-VGDASTISMVINMLHDGRLEK 622
Query: 590 KYRECLN 596
Y E L+
Sbjct: 623 SYLEMLS 629
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (901), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 205/587 (34%), Positives = 324/587 (55%), Gaps = 38/587 (6%)
Query: 53 DRHKSG--NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN 110
D+ SG I +++AV F MI+ +P P + F L + +AK KQY+ V++L K++ S
Sbjct: 58 DKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESK 117
Query: 111 GLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEA 170
G+ ++ L+++INC C+ S AF +G+I++ + P+TV FN L+NGLC E R+ EA
Sbjct: 118 GIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEA 177
Query: 171 ARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMV------NE--FGAI--- 219
L ++ P ++T NTL+NGLC A+ L + MV NE +G +
Sbjct: 178 LELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV 237
Query: 220 -CKP--------------------DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN 258
CK D V Y+ IIDGLCKDG +D A L +M+ + +
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
Query: 259 VITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLE 318
+ITYN+LI GFC W + L +M+ + P+VVTF+ +I+ K+GK+ + ++LL+
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357
Query: 319 LMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ 378
M+QRG+ P+T+TYNSL+DGFC R+ A ++ M+SKGC D+ ++NILIN CK
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417
Query: 379 KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFA 438
+++D + L+REM + + +TYNTL+ G Q G L A KL +M V PD ++
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
Query: 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498
+DGLC NG + +A+++F I K EL I Y +I+G+C ++ A LF L K
Sbjct: 478 ILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLK 537
Query: 499 GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558
G D + MI LC++ + KA+ L M + P E+T+ L+R + ++ +
Sbjct: 538 GVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTA 597
Query: 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLSK---DKKYRECLNQFRHLL 602
L+ +M + +D+S V+++LS DK + + L+ R L
Sbjct: 598 AELIEEMKSSGF-PADVSTVKMVINMLSSGELDKSFLDMLSTTRASL 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 204/568 (35%), Positives = 313/568 (55%), Gaps = 35/568 (6%)
Query: 53 DRHKSG--NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN 110
+R +SG +I ++AV F M + +P P + F+ L +++A+ KQYD V+ L K++
Sbjct: 42 ERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELK 101
Query: 111 GLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEA 170
G+ +L+ L+++INC C+ S AF +G+I++ + P+TVTF+ LINGLC EGR+ EA
Sbjct: 102 GIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA 161
Query: 171 ARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMV------NE--FGAI--- 219
L ++ P ++T N L+NGLC A+ L + MV NE +G +
Sbjct: 162 LELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV 221
Query: 220 -CKP--------------------DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN 258
CK D V Y+ IIDGLCKDG +D A L +M+ + +
Sbjct: 222 MCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 281
Query: 259 VITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLE 318
+I Y +LI GFC W + L +M+ + PDVV F+A+I+ K+GK+ + L +
Sbjct: 282 IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHK 341
Query: 319 LMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ 378
MIQRG++PDTVTY SL+DGFC ++ +A + MVSKGC ++ ++NILIN CK
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401
Query: 379 KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFA 438
++D + L+R+M + +TYNTL+ G ++G L A +L +M V PD ++
Sbjct: 402 LIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461
Query: 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498
+DGLC NG +A+++F+ I K EL I YN +I+G+C ++ A LF L K
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 521
Query: 499 GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558
G PDV T + MI LCK+G + +A+ L ME P+ T+ L+R + +K
Sbjct: 522 GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKS 581
Query: 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLS 586
L+ ++ V D S VVD+LS
Sbjct: 582 AKLIEEIKRCGFSV-DASTVKMVVDMLS 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 190/538 (35%), Positives = 307/538 (57%), Gaps = 38/538 (7%)
Query: 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLL 122
++AV F M+K +P P + F+ LL+ +AK ++D V+SL +++ + G+ + + ++L
Sbjct: 63 DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSIL 122
Query: 123 INCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC 182
INC C+ A VLG++++ + PN VT + L+NG C RI EA L ++ V
Sbjct: 123 INCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 182
Query: 183 DPNVVTFNTLI-----------------------------------NGLCRTRNTLVALK 207
PN VTFNTLI NGLC+ +T +A
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFN 242
Query: 208 LFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLIC 267
L +M E G + +P V+ YN+IIDGLCK +D A L +M+ + I PNV+TY+SLI
Sbjct: 243 LLNKM--EQGKL-EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 268 GFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP 327
C W +A L +M++ + PDV TF+A+I+ K+GK+ + +L + M++R ++P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359
Query: 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLY 387
VTY+SL++GFC+ R+ A+++F MVSK C DV +YN LI CK ++VE+ + ++
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419
Query: 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447
REM + + +TYN L+ GLFQ G+ A ++ +M + V P+ T+ T +DGLCKN
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479
Query: 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC 507
G + +A+ VF+ ++ K E I TYN +I G+CK G+++ LF L KG PDVV
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 539
Query: 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565
+TMI C++G ++A+ L +M+ +P+ + TL+R +++ + L+ +M
Sbjct: 540 NTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/572 (34%), Positives = 315/572 (55%), Gaps = 42/572 (7%)
Query: 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLL 122
++A+ F M+K +P P + F LL+ +AK K++D V+SL +++ + L+ N+L
Sbjct: 67 DDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNIL 126
Query: 123 INCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIM-------------- 168
INC C+ S A +LG++++ + P+ VT + L+NG C RI
Sbjct: 127 INCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGY 186
Query: 169 ---------------------EAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALK 207
EA L ++ C PN+VT+ ++NGLC+ +T +AL
Sbjct: 187 RPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALN 246
Query: 208 LFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLIC 267
L +M A + DVV +N+IID LCK VD A L +M+ + I PNV+TY+SLI
Sbjct: 247 LLNKME---AAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 303
Query: 268 GFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP 327
C W +A L +M++ + P++VTFNA+I+ K+GK + +L + MI+R ++P
Sbjct: 304 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 363
Query: 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLY 387
D TYNSL++GFC+ R+ +A+++F MVSK C DV +YN LI CK ++VED L+
Sbjct: 364 DIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423
Query: 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447
REM + +TY TL+ GLF G+ +A K+ +M + V PD T++ +DGLC N
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483
Query: 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC 507
G + +A++VF ++ + +L I Y +I G+CK G++ LF L KG P+VVT
Sbjct: 484 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 543
Query: 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567
+TMI LC + + +A LL M+ +P+ T+ TL+R +++ K+ L+ +M +
Sbjct: 544 NTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
Query: 568 EKLVVSDLSLSSKVVDLLSK---DKKYRECLN 596
+ V D S V ++L DK + + L+
Sbjct: 604 CRF-VGDASTIGLVANMLHDGRLDKSFLDMLS 634
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 189/558 (33%), Positives = 313/558 (56%), Gaps = 39/558 (6%)
Query: 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLL 122
++AV F M+K +P P + F+ LL+ +AK ++D V+SL +++ + G+ +L+ ++L
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122
Query: 123 INCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC 182
INC C+ S A VL ++++ + P+ VT N L+NG C RI +A L ++
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182
Query: 183 DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK 242
P+ TFNTLI+GL R A+ L + MV + C+PD+VTY +++GLCK G +D
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG---CQPDLVTYGIVVNGLCKRGDIDL 239
Query: 243 AKELL-----------------------------------LQMKDRNINPNVITYNSLIC 267
A LL +M ++ I PNV+TYNSLI
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Query: 268 GFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP 327
C W +A L +M++ + P+VVTF+A+I+ K+GK+ + +L + MI+R ++P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359
Query: 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLY 387
D TY+SL++GFC+ R+ A+ +F M+SK C +V +YN LI CK ++V++ + L+
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447
REM + + +TY TL+ G FQ +A + +M + V+PD T++ +DGLC N
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNN 479
Query: 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC 507
G V A+ VF+ ++ K E I TYN +I G+CK G+++ LF L KG P+VVT
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539
Query: 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567
+TM+ C++G ++A+ L +M+ + +P T+ TL+R +++ K+ L+ +M +
Sbjct: 540 TTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Query: 568 EKLVVSDLSLSSKVVDLL 585
+ V D S V ++L
Sbjct: 600 CRF-VGDASTIGLVTNML 616
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 603 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.956 | 0.920 | 0.496 | 1e-155 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.908 | 0.905 | 0.499 | 1e-152 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.907 | 0.871 | 0.478 | 1e-145 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.923 | 0.901 | 0.475 | 1e-144 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.875 | 0.872 | 0.471 | 1e-137 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.862 | 0.871 | 0.461 | 1e-131 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.845 | 0.879 | 0.434 | 1e-117 | |
| 225451354 | 744 | PREDICTED: putative pentatricopeptide re | 0.868 | 0.704 | 0.414 | 1e-112 | |
| 147771990 | 2021 | hypothetical protein VITISV_022963 [Viti | 0.835 | 0.249 | 0.416 | 1e-110 | |
| 147768816 | 653 | hypothetical protein VITISV_031897 [Viti | 0.868 | 0.802 | 0.401 | 1e-110 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 292/588 (49%), Positives = 388/588 (65%), Gaps = 11/588 (1%)
Query: 19 RCNFWCSFGRPPNPKTDLSSHHFKDGTS-------IAKFLNDRHKSGNITSNEAVYFFDC 71
RC F P P + KD S + FL KSG+I +EA F+
Sbjct: 23 RCKLSSLFEHPHRPISPGPISLTKDTVSNAPDRGQLENFLKSNCKSGHIKRSEAFSVFNH 82
Query: 72 MIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131
+I M+P+P ++SF LL +AK K+Y V+SL+KR++ GL PD LN+LINC C +
Sbjct: 83 LIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNK 142
Query: 132 TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNT 191
VLG +LR +PNTVTF L+ GLC RI EA L +K+ PNVVT+ T
Sbjct: 143 VDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGT 202
Query: 192 LINGLCRTRNTLVALKLFEEMVNE---FGAICKPDVVTYNSIIDGLCKDGFVDKAKELLL 248
L+NGLC T NT++A+KL EEM+N FG KP++V Y +IID LCKDG +DK KEL L
Sbjct: 203 LLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFL 262
Query: 249 QMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG 308
+MK R I+P+V+ Y+S+I G C W+ AK LF EM+D GV P+VVTFN +I+ CK G
Sbjct: 263 EMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAG 322
Query: 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYN 368
KM++ N LL+LMIQRG +PDT TYN+L+DGFCL GRI AR+LFVSM SKG D SYN
Sbjct: 323 KMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYN 382
Query: 369 ILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN 428
+LIN CK ++ +A LYREM+ + I P+VITYNTLL+GLF+ G + DA L +M+++
Sbjct: 383 VLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVH 442
Query: 429 DVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTA 488
D+ P+S T+ +DGLCKN + EA+++F + N + I+ +NCLI+GLCK +++ A
Sbjct: 443 DLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIA 502
Query: 489 CKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548
+LF+RL H+G P+V+T + MIH LCK GQ++ A DL L ME K C P+ VTF TL+RG
Sbjct: 503 RELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRG 562
Query: 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLN 596
F QN++ KVV LL +M AEK D S S VVDLLSKD+KYRE L+
Sbjct: 563 FCQNDEMQKVVELLQEM-AEKDFSPDASTISIVVDLLSKDEKYREYLH 609
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/555 (49%), Positives = 384/555 (69%), Gaps = 7/555 (1%)
Query: 46 SIAKFLNDRH-KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLF 104
IA FL RH K+GN+T+ A++FF M++ P+P ++SF LL+ LAK K Y V SL+
Sbjct: 35 QIAFFL--RHCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLY 92
Query: 105 KRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAE 164
++ +GL D LN+L+NCLC + F ILR ++PN VT+N LI GLC E
Sbjct: 93 NQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCME 152
Query: 165 GRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAI---CK 221
RI EA RLF ++ C P+VVT+ TLI GLC T N +ALKL +EM+N+ CK
Sbjct: 153 HRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCK 212
Query: 222 PDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCL 281
P+V+TYN I+DGLCK G D+AK+L +MK + + P++I+YNSLI GFCC W+E+K L
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272
Query: 282 FIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL 341
EM+D G+QPD+VTFN +I+ CK+GK+ + +LL +MI+ G+ PD VTYNSL++GFC+
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332
Query: 342 VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVIT 401
VG ++ ARELFVSM SKGC DV SYN+LIN K KVE+A+ LY EML RP+VIT
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVIT 392
Query: 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIR 461
Y++LL G+F G + DA KL M+ + + +S+T+ ++DGLCKN + EA+++F ++
Sbjct: 393 YDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELK 452
Query: 462 NCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMD 521
+ +L IE NCLI+GLCK G+L+TA +LF +L ++G P+VVT + MIH C+EGQ+D
Sbjct: 453 SSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVD 512
Query: 522 KANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKV 581
KAN L+ MEA C P +T+ TL+RGF ++NK +VV LLH+M A+K V D S V
Sbjct: 513 KANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM-AQKDVSPDAITCSIV 571
Query: 582 VDLLSKDKKYRECLN 596
VD+LSKD+KY+ECL+
Sbjct: 572 VDMLSKDEKYQECLH 586
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 274/573 (47%), Positives = 376/573 (65%), Gaps = 26/573 (4%)
Query: 30 PNPKTDLSSHHFKDGTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLT 89
PN ++D + +FL KSG+ T +EA++FF+ MI M+ +P ++ F L
Sbjct: 65 PNTQSD---------NPLEQFLEINCKSGDFTLHEALHFFNQMIHMQTTPALSRFNNLFG 115
Query: 90 MLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTP 149
LAK KQY V+S+ R+NS GL + LN+L+NCLC + FVV G ILR + P
Sbjct: 116 ALAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRP 175
Query: 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLF 209
NT TF L+ GLC EG+I EA R+FK + VF C P+ +T LI+GLCRT NT ALKL
Sbjct: 176 NTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLH 235
Query: 210 EEMVN---EFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLI 266
E M+N +FG CKP VV+Y+ IID LCKDG V++AKE ++MK++ I PNV+TY SL+
Sbjct: 236 EAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLL 295
Query: 267 CGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN 326
G C +W+EAK LFIEM+D+G+ PDVVTF+ +I CK GK+ + + L +LM+QR V
Sbjct: 296 HGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVE 355
Query: 327 PDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCL 386
P T TYN L++G+CL G + +++F+SMV+K C+HD SY+IL+ A CKD +V A+ L
Sbjct: 356 PSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMIL 415
Query: 387 YREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFA---TYIDG 443
YREM+ I+P+VITY+ +GDA KL ++Q D+V DS +++ Y+DG
Sbjct: 416 YREMMDRGIQPTVITYS----------KVGDARKLFGEIQFQDMVLDSISYSIYNVYLDG 465
Query: 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD 503
LCKNG V EA+ VF + NCK + +N LING+C+ +L+ A +LF+RL ++ PD
Sbjct: 466 LCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPD 525
Query: 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLH 563
VVT + MI+ LCK GQ KA DL L+ME K C P+ VTF TL+RG N+++ K+V LLH
Sbjct: 526 VVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLH 585
Query: 564 KMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLN 596
KMAA KL D S V+D+L KD+ Y ECLN
Sbjct: 586 KMAARKL-SPDASTLLIVMDILLKDENYHECLN 617
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 273/574 (47%), Positives = 375/574 (65%), Gaps = 17/574 (2%)
Query: 30 PNP-------KTDLSSHHFKDGTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMT 82
PNP + ++S HH ++ FL + K+GNIT+ +A +FFD M++ P P ++
Sbjct: 39 PNPILPAAFNREEISFHH-----PLSLFLRNC-KTGNITAIQAFHFFDLMMRSHPIPPIS 92
Query: 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRI 142
SF LL LAK Y + SL+ + GL PDLF L++L NCLC + S A + I
Sbjct: 93 SFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGI 152
Query: 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNT 202
LR + PN VT+ LI GLC E RI EA RLF ++ C PN VT+ TLI GLC+T N
Sbjct: 153 LRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNV 212
Query: 203 LVALKLFEEMVN---EFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNV 259
+ALKL +EM+N ++G CKP V+TY+ IIDGLCK G D+AKEL +MK + + P+V
Sbjct: 213 NIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDV 272
Query: 260 ITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLEL 319
I+Y++LI GFCC W ++K LF EM+D GVQPD+VTF+ +I+ CK+GK+ + +LLE+
Sbjct: 273 ISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEV 332
Query: 320 MIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQK 379
MIQRG+ P+ +TYNSL+DGFC+VG ++ ARELF+SM SKG D SY LIN CK K
Sbjct: 333 MIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWK 392
Query: 380 VEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFAT 439
V++A+ LY EML P+V TY TLL GLFQ G +GDA KL M+ V +S +
Sbjct: 393 VKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGI 452
Query: 440 YIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499
++DGLCKN + EA+++F +++ +L IE Y+CLI+GLCK G+L+TA +LF +L +G
Sbjct: 453 FLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEG 512
Query: 500 PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559
PDVVT + MIH CK GQ+D AN L ME C P + + TLL GF + NK +V+
Sbjct: 513 LQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVI 572
Query: 560 VLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRE 593
LLHKM +K V + + + VVD+L KD+KY++
Sbjct: 573 KLLHKM-VQKDVSPNAASCTIVVDMLCKDEKYKK 605
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/539 (47%), Positives = 356/539 (66%), Gaps = 11/539 (2%)
Query: 56 KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD 115
K+GNIT+ +A FF M+ P+P ++SFT LL+ LAK K Y V L+ ++ +G+ PD
Sbjct: 71 KTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPD 130
Query: 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFK 175
LN+L+NCLC + V+ ILR + P+ VT+ LI GLC E RI +AA LF
Sbjct: 131 CCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFT 190
Query: 176 KLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE---FGAICKPDVVTYNSIID 232
++ C PN +T+ TL+ GLCRT N +ALKL +EM+N+ +G KP V++Y+ IID
Sbjct: 191 RMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIID 250
Query: 233 GLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP 292
LCKD D+A++L +MK + + P VI+Y SLI GFCC W+EAK LF EM++ GVQP
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQP 310
Query: 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELF 352
+VVTFN +I+ CK+GK+ + LLE+MIQRG+ P+ +TYNSL++GFCLVG ++ ARELF
Sbjct: 311 NVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 370
Query: 353 VSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412
VSM SKGC DV Y +LIN CK KVE+A+ LY ML RP V TY LL+GLFQ
Sbjct: 371 VSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQG 430
Query: 413 GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETY 472
G +GDA KL M++ + D + + +++GLCKNG + EA+++F +++ +L IE +
Sbjct: 431 GKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECF 490
Query: 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532
NCLI+GLCK G+L+TA +LF +L + PDVVT + MIH C+ GQ+ KAN L ME
Sbjct: 491 NCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEK 550
Query: 533 KNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY 591
C P ++T+ TL+RGF ++ K KVV LLH M V D+SL V++L ++++
Sbjct: 551 NGCTPDKITYATLIRGFFESKKLEKVVELLHMM-----VQRDVSLD---VNILRHNRRH 601
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/539 (46%), Positives = 352/539 (65%), Gaps = 19/539 (3%)
Query: 56 KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD 115
K+GNIT+ +A FF M+ P+P ++SFT LL+ LAK K Y V L+ ++ +G+ PD
Sbjct: 71 KTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPD 130
Query: 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFK 175
LN+L+NCLC + V+ ILR + P+ VT+ LI GLC E RI +AA LF
Sbjct: 131 CCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFT 190
Query: 176 KLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE---FGAICKPDVVTYNSIID 232
++ C PN +T+ TL+ GLCRT N +ALKL +EM+N+ +G KP V++Y+ IID
Sbjct: 191 RMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIID 250
Query: 233 GLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP 292
LCKD D+A++L +MK + + P VI+Y SL+ W+EAK LF EM++ GVQP
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQP 302
Query: 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELF 352
+VVTFN +I+ CK+GK+ + LLE+MIQRG+ P+ +TYNSL++GFCLVG ++ ARELF
Sbjct: 303 NVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 362
Query: 353 VSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412
VSM SKGC DV Y +LIN CK KVE+A+ LY ML RP V TY LL+GLFQ
Sbjct: 363 VSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQG 422
Query: 413 GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETY 472
G +GDA KL M++ + D + + +++GLCKNG + EA+++F +++ +L IE +
Sbjct: 423 GKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECF 482
Query: 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532
NCLI+GLCK G+L+TA +LF +L + PDVVT + MIH C+ GQ+ KAN L ME
Sbjct: 483 NCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEK 542
Query: 533 KNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY 591
C P ++T+ TL+RGF ++ K KVV LLH M V D+SL V++L ++++
Sbjct: 543 NGCTPDKITYATLIRGFFESKKLEKVVELLHMM-----VQRDVSLD---VNILRHNRRH 593
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/568 (43%), Positives = 344/568 (60%), Gaps = 58/568 (10%)
Query: 46 SIAKFLNDRH-KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLF 104
IA FL RH K+GN+T+ A++FF M++ P+P ++SF LL+ LAK K Y
Sbjct: 35 QIAFFL--RHCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHY------- 85
Query: 105 KRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAE 164
S F + ++ S + + T N L+N LC
Sbjct: 86 ----------------------------SQVFSLYNQMRLSGLSSDRCTLNILLNCLCNV 117
Query: 165 GRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDV 224
R+ E F + PN+VT+NTLI GLC A +LF M + G C PDV
Sbjct: 118 NRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM-QKLG--CTPDV 174
Query: 225 VTYNSIIDGLCKDGFVDKA----KELLLQMKDRNIN--PNVITYNSLICGFCCVDDWKEA 278
VTY ++I GLC G ++ A +E+L + IN PNVITYN ++ G C V EA
Sbjct: 175 VTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEA 234
Query: 279 KCLFIEM----------MDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPD 328
K LF EM +D G+QPD+VTFN +I+ CK+GK+ + +LL +MI+ G+ PD
Sbjct: 235 KQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 294
Query: 329 TVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR 388
VTYNSL++GFC+VG ++ ARELFVSM SKGC DV SYN+LIN K KVE+A+ LY
Sbjct: 295 LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYN 354
Query: 389 EMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNG 448
EML RP+VITY++LL G+F G + DA KL M+ + + +S+T+ ++DGLCKN
Sbjct: 355 EMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKND 414
Query: 449 FVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCS 508
+ EA+++F +++ +L IE NCLI+GLCK G+L+TA +LF +L ++G P+VVT +
Sbjct: 415 CLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYT 474
Query: 509 TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568
MIH C+EGQ+DKAN L+ MEA C P +T+ TL+RGF ++NK +VV LLH+M A+
Sbjct: 475 IMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM-AQ 533
Query: 569 KLVVSDLSLSSKVVDLLSKDKKYRECLN 596
K V D S VVD+LSKD+KY+ECL+
Sbjct: 534 KDVSPDAITCSIVVDMLSKDEKYQECLH 561
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/528 (41%), Positives = 320/528 (60%), Gaps = 4/528 (0%)
Query: 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLN 120
T ++A+ F+ ++ M P P + F LLT +AK K Y TV+SL +++S G+ P+++ LN
Sbjct: 36 TLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 95
Query: 121 LLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVF 180
+LIN C + AF VL +IL+ P+ TF LI GLC EG+I EA LF K+
Sbjct: 96 ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 155
Query: 181 ACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240
PNVVT+ TLINGLC+ NT A++L M E G C+PDVV Y SIID LCKD V
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM--EQGN-CQPDVVIYTSIIDSLCKDRQV 212
Query: 241 DKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAM 300
+A L QM + I+P++ TY SL+ C + +WK L +M+++ + PDVV F+ +
Sbjct: 213 TEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 272
Query: 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC 360
++ CK+GK+ + + ++++MIQRGV PD VTY +LMDG CL + A ++F MV KG
Sbjct: 273 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 332
Query: 361 RHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALK 420
DV SY LIN CK K++ A+ L+ EM + P TYNTL+ GL VG L DA+
Sbjct: 333 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIA 392
Query: 421 LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLC 480
L +M +PD T++ +D LCKN + EA+ + +AI I+ YN +I+G+C
Sbjct: 393 LFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 452
Query: 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540
+ G L+ A LF L KG P V T + MIH LCK G +++AN L ++M+ +C P
Sbjct: 453 RAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGC 512
Query: 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588
T+ T+ RGF+QNN+ + + LL +M A +D+S ++ +V++LS D
Sbjct: 513 TYNTIARGFLQNNETLRAIQLLEEMLARGF-SADVSTTTLLVEMLSDD 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/507 (41%), Positives = 305/507 (60%), Gaps = 3/507 (0%)
Query: 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLN 120
T ++A+ F+ ++ M P P + F LLT +AK K Y TV+SL +++S G+ P+++ LN
Sbjct: 45 TLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLN 104
Query: 121 LLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVF 180
+LIN C + AF VL +IL+ P+ TF LI GLC EG+I EA LF K+
Sbjct: 105 ILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE 164
Query: 181 ACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240
PNVVT+ TLINGLC+ NT A++L M C+PDVV Y SIID LCKD V
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ---GNCQPDVVIYTSIIDSLCKDRQV 221
Query: 241 DKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAM 300
+A L QM + I+P++ TY SL+ C + +WK L +M+++ + PDVV F+ +
Sbjct: 222 TEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 281
Query: 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC 360
++ CK+GK+ + + ++++MIQRGV PD VTY +LMDG CL + A ++F MV KG
Sbjct: 282 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 341
Query: 361 RHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALK 420
DV SY LIN CK K++ A+ L+ EM + P TYNTL+ GL VG L DA+
Sbjct: 342 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIA 401
Query: 421 LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLC 480
L +M +PD T++ +D LCKN + EA+ + +AI I+ YN +I+G+C
Sbjct: 402 LFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 461
Query: 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540
+ G L+ A LF L KG P V T + MIH LCK G +++AN L ++M+ +C P
Sbjct: 462 RAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGC 521
Query: 541 TFCTLLRGFVQNNKKSKVVVLLHKMAA 567
T+ T+ RGF+QNN+ + + LL +M A
Sbjct: 522 TYNTIARGFLQNNETLRAIQLLEEMLA 548
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/528 (40%), Positives = 323/528 (61%), Gaps = 4/528 (0%)
Query: 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLN 120
T +EA+ F+ M+ +P P F LLT +AK K + T++SL ++++S G+ PD++ L
Sbjct: 50 TLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLA 109
Query: 121 LLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVF 180
++IN LC + AF L +IL+ P+ TF LI GLC EG+I EA LF K+
Sbjct: 110 IVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGE 169
Query: 181 ACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240
PNVVT+ TLINGLC+ NT A++L M E G C+P+VV ++++ID LCKD V
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM--EQGN-CQPNVVVFSTLIDSLCKDRQV 226
Query: 241 DKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAM 300
+A + +M + I+PN++TYNSLI G C + +WK L EM+D+ + PDV T N +
Sbjct: 227 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286
Query: 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC 360
++ CK+G + + + ++++MI RGV P+ VTYN+LMDG CL + A ++F +MV K C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346
Query: 361 RHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALK 420
+V SYN LIN CK Q V+ A+ L+ EM + + P+ +TYNTL+ GL VG L DA+
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAIS 406
Query: 421 LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLC 480
L +M +PD T+ T D LCKN + +A+ + +AI + I+ Y +++G+C
Sbjct: 407 LFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 466
Query: 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540
+ G L+ A LF L KG P+V T + MIH LCK+G + +A+ L +M C P++
Sbjct: 467 RAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDC 526
Query: 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588
T+ + RGF++NN+ + + LL +M A V D+S ++ +V +LS D
Sbjct: 527 TYNLITRGFLRNNEALRTIELLEEMLARGFSV-DVSTTTLLVGMLSDD 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 603 | ||||||
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.799 | 0.778 | 0.373 | 2.7e-84 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.804 | 0.789 | 0.356 | 7.2e-84 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.796 | 0.761 | 0.351 | 2.4e-83 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.922 | 0.882 | 0.333 | 2.4e-83 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.814 | 0.780 | 0.356 | 3.9e-83 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.800 | 0.761 | 0.358 | 6.4e-83 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.882 | 0.901 | 0.342 | 2.8e-82 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.845 | 0.800 | 0.335 | 6.6e-81 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.799 | 0.766 | 0.352 | 2.2e-80 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.796 | 0.745 | 0.343 | 2.1e-77 |
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 181/485 (37%), Positives = 278/485 (57%)
Query: 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLG 140
M + TI++ + K+ S+ R G PD + L+N C G S A ++
Sbjct: 105 MYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVD 164
Query: 141 RILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTR 200
R++ P+ VT + LINGLC +GR+ EA L ++ + P+ VT+ ++N LC++
Sbjct: 165 RMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSG 224
Query: 201 NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVI 260
N+ +AL LF +M E I K VV Y+ +ID LCKDG D A L +M+ + I +V+
Sbjct: 225 NSALALDLFRKM--EERNI-KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281
Query: 261 TYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELM 320
TY+SLI G C W + + EM+ + PDVVTF+A+I+ K+GK+ + L M
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 321 IQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380
I RG+ PDT+TYNSL+DGFC + A ++F MVSKGC D+ +Y+ILIN+ CK ++V
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRV 401
Query: 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATY 440
+D + L+RE+ S+ + P+ ITYNTL+ G Q G L A +L +M V P T+
Sbjct: 402 DDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGIL 461
Query: 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500
+DGLC NG + +A+++F+ ++ + L I YN +I+G+C ++ A LF L KG
Sbjct: 462 LDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGV 521
Query: 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560
PDVVT + MI LCK+G + +A+ L M+ C P + T+ L+R + + V
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Query: 561 LLHKM 565
L+ +M
Sbjct: 582 LIEEM 586
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 174/488 (35%), Positives = 284/488 (58%)
Query: 78 SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137
S + ++ I++ L + Q +++ ++ G P + LN L+N C S A
Sbjct: 97 SHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVA 156
Query: 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC 197
++ +++ + P+TVTF L++GL + EA L +++ V C P++VT+ +INGLC
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 216
Query: 198 RTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINP 257
+ +AL L +M E G I + DVV Y+++ID LCK VD A L +M ++ I P
Sbjct: 217 KRGEPDLALNLLNKM--EKGKI-EADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRP 273
Query: 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317
+V TY+SLI C W +A L +M++ + P+VVTFN++I+ K+GK+ + +L
Sbjct: 274 DVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLF 333
Query: 318 ELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377
+ MIQR ++P+ VTYNSL++GFC+ R+ A+++F MVSK C DV +YN LIN CK
Sbjct: 334 DEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTF 437
+KV D + L+R+M + + +TY TL+ G FQ + +A + +M + V P+ T+
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 438 ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497
T +DGLCKNG + +A+ VF+ ++ K E I TYN + G+CK G+++ LF L
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 498 KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557
KG PDV+ +TMI CK+G ++A L + M+ +P T+ TL+R +++ K+
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573
Query: 558 VVVLLHKM 565
L+ +M
Sbjct: 574 SAELIKEM 581
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 170/483 (35%), Positives = 286/483 (59%)
Query: 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRI 142
+++IL+ + Q +++ ++ G P++ L+ L+N C S A ++ ++
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNT 202
+ + PNTVTFN LI+GL + EA L ++ C P++VT+ ++NGLC+ +T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 203 LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITY 262
+A L +M E G + +P V+ YN+IIDGLCK +D A L +M+ + I PNV+TY
Sbjct: 238 DLAFNLLNKM--EQGKL-EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 263 NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ 322
+SLI C W +A L +M++ + PDV TF+A+I+ K+GK+ + +L + M++
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 323 RGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVED 382
R ++P VTY+SL++GFC+ R+ A+++F MVSK C DV +YN LI CK ++VE+
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414
Query: 383 AVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442
+ ++REM + + +TYN L+ GLFQ G+ A ++ +M + V P+ T+ T +D
Sbjct: 415 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474
Query: 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP 502
GLCKNG + +A+ VF+ ++ K E I TYN +I G+CK G+++ LF L KG P
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534
Query: 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562
DVV +TMI C++G ++A+ L +M+ +P+ + TL+R +++ + L+
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
Query: 563 HKM 565
+M
Sbjct: 595 KEM 597
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 190/569 (33%), Positives = 321/569 (56%)
Query: 6 SHRSFSLASKAGYRCNFW-CSFGRPPNPKTDLSSHHFKDGTSIAKFLNDRHKSGNITSNE 64
SH SF + +G R ++ S R + K D + + F D F + S +++
Sbjct: 33 SHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIA 92
Query: 65 AVYFFDCMIKMKP-------SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLF 117
+ FD +I + S + +++IL+ + Q +++ ++ G PD+
Sbjct: 93 KMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIV 152
Query: 118 VLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKL 177
LN L+N C S A ++G+++ + P++ TFN LI+GL R EA L ++
Sbjct: 153 TLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Query: 178 NVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237
V C P++VT+ ++NGLC+ + +AL L ++M E G I +P VV YN+IID LC
Sbjct: 213 VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM--EQGKI-EPGVVIYNTIIDALCNY 269
Query: 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297
V+ A L +M ++ I PNV+TYNSLI C W +A L +M++ + P+VVTF
Sbjct: 270 KNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329
Query: 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357
+A+I+ K+GK+ + +L + MI+R ++PD TY+SL++GFC+ R+ A+ +F M+S
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 389
Query: 358 KGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGD 417
K C +V +YN LI CK ++V++ + L+REM + + +TY TL+ G FQ +
Sbjct: 390 KDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDN 449
Query: 418 ALKLIDKMQLND-VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476
A +++ K ++D V+PD T++ +DGLC NG V A+ VF+ ++ K E I TYN +I
Sbjct: 450 A-QIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMI 508
Query: 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCV 536
G+CK G+++ LF L KG P+VVT +TM+ C++G ++A+ L +M+ + +
Sbjct: 509 EGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPL 568
Query: 537 PSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565
P T+ TL+R +++ K+ L+ +M
Sbjct: 569 PDSGTYNTLIRAHLRDGDKAASAELIREM 597
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 176/494 (35%), Positives = 289/494 (58%)
Query: 72 MIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131
M ++ S + S+ IL+ + Q +++ ++ G PD+ L+ L+N C
Sbjct: 106 MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 165
Query: 132 TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNT 191
S A ++ ++ + PNTVTFN LI+GL + EA L ++ C P++ T+ T
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225
Query: 192 LINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMK 251
++NGLC+ + +AL L ++M E G I + DVV Y +IID LC V+ A L +M
Sbjct: 226 VVNGLCKRGDIDLALSLLKKM--EKGKI-EADVVIYTTIIDALCNYKNVNDALNLFTEMD 282
Query: 252 DRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMD 311
++ I PNV+TYNSLI C W +A L +M++ + P+VVTF+A+I+ K+GK+
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342
Query: 312 KVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILI 371
+ +L + MI+R ++PD TY+SL++GFC+ R+ A+ +F M+SK C +V +YN LI
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 372 NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV 431
CK ++VE+ + L+REM + + +TYNTL+ GLFQ G+ A K+ KM + V
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462
Query: 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491
PD T++ +DGLCK G + +A+ VF+ ++ K E I TYN +I G+CK G+++ L
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522
Query: 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551
F L KG P+V+ +TMI C++G ++A+ L +M+ +P+ T+ TL+R ++
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Query: 552 NNKKSKVVVLLHKM 565
+ K+ L+ +M
Sbjct: 583 DGDKAASAELIKEM 596
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 174/486 (35%), Positives = 281/486 (57%)
Query: 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVL 139
G+ ++ IL+ + Q ++L ++ G P + L+ L+N C S A ++
Sbjct: 119 GLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 178
Query: 140 GRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT 199
+++ + P+T+TF LI+GL + EA L ++ C PN+VT+ ++NGLC+
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 200 RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNV 259
+T +AL L +M E I + DVV +N+IID LCK VD A L +M+ + I PNV
Sbjct: 239 GDTDLALNLLNKM--EAAKI-EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 295
Query: 260 ITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLEL 319
+TY+SLI C W +A L +M++ + P++VTFNA+I+ K+GK + +L +
Sbjct: 296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355
Query: 320 MIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQK 379
MI+R ++PD TYNSL++GFC+ R+ +A+++F MVSK C DV +YN LI CK ++
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415
Query: 380 VEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFAT 439
VED L+REM + +TY TL+ GLF G+ +A K+ +M + V PD T++
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475
Query: 440 YIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499
+DGLC NG + +A++VF ++ + +L I Y +I G+CK G++ LF L KG
Sbjct: 476 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535
Query: 500 PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559
P+VVT +TMI LC + + +A LL M+ +P+ T+ TL+R +++ K+
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595
Query: 560 VLLHKM 565
L+ +M
Sbjct: 596 ELIREM 601
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 184/538 (34%), Positives = 306/538 (56%)
Query: 31 NPKTDLS-SHHFKDGTSIAKFLN-DRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILL 88
NP+T L F +S N R ++ ++A+ F M+K +P P + F+ LL
Sbjct: 23 NPRTTLCWERSFAGASSDDCRENLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLL 82
Query: 89 TMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFT 148
+ +AK ++D V+SL +++ + G+ +L+ ++ IN C+ S A +LG++++ +
Sbjct: 83 SAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYG 142
Query: 149 PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKL 208
P+ VT N L+NG C RI EA L ++ P+ VTF TL++GL + A+ L
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202
Query: 209 FEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICG 268
E MV + G C+PD+VTY ++I+GLCK G D A LL +M+ I +V+ YN++I G
Sbjct: 203 VERMVVK-G--CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDG 259
Query: 269 FCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPD 328
C +A LF +M G++PDV T+N +I+ C G+ +RLL M+++ +NPD
Sbjct: 260 LCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD 319
Query: 329 TVTYNSLMDGFCLVGRISRARELFVSMV-SKGCRHDVYSYNILINANCKDQKVEDAVCLY 387
V +N+L+D F G++ A +L+ MV SK C DV +YN LI CK ++VE+ + ++
Sbjct: 320 LVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVF 379
Query: 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447
REM + + +TY TL+ G FQ + +A + +M + V PD T+ +DGLC N
Sbjct: 380 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNN 439
Query: 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC 507
G V A+ VF+ ++ +L I TY +I LCK G+++ LF L KG P+VVT
Sbjct: 440 GNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTY 499
Query: 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565
+TM+ C++G ++A+ L ++M+ +P+ T+ TL+R +++ ++ L+ +M
Sbjct: 500 TTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 173/515 (33%), Positives = 291/515 (56%)
Query: 53 DRHKSG--NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN 110
+R +SG +I +++A+ F MI +P P + F+ L + +AK KQYD V++L K++
Sbjct: 58 ERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELK 117
Query: 111 GLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEA 170
G+ +L+ L+++INC C+ AF +G+I++ + PNT+TF+ LINGLC EGR+ EA
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 177
Query: 171 ARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSI 230
L ++ P+++T NTL+NGLC + A+ L ++MV E+G C+P+ VTY +
Sbjct: 178 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV-EYG--CQPNAVTYGPV 234
Query: 231 IDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGV 290
++ +CK G A ELL +M++RNI + + Y+ +I G C A LF EM G+
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 294
Query: 291 QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350
+++T+N +I C G+ D +LL MI+R +NP+ VT++ L+D F G++ A E
Sbjct: 295 TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEE 354
Query: 351 LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLF 410
L M+ +G D +Y LI+ CK+ ++ A + M+S+ P++ T+N L++G
Sbjct: 355 LHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYC 414
Query: 411 QVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE 470
+ + D L+L KM L VV D+ T+ T I G C+ G + A ++FQ + + K I
Sbjct: 415 KANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIV 474
Query: 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM 530
TY L++GLC G + A ++F +++ D+ + +IH +C ++D A DL +
Sbjct: 475 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534
Query: 531 EAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565
K P T+ ++ G + S+ +L KM
Sbjct: 535 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 172/488 (35%), Positives = 281/488 (57%)
Query: 78 SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137
S + +++I + + Q +++ ++ G PD+ L+ L+N C S A
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174
Query: 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC 197
++ +++ + P+T TF LI+GL + EA L ++ C P++VT+ T++NGLC
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Query: 198 RTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINP 257
+ + +AL L +M E I K +VV +N+IID LCK V+ A +L +M+ + I P
Sbjct: 235 KRGDIDLALNLLNKM--EAARI-KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP 291
Query: 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317
NV+TYNSLI C W +A L M++ + P+VVTFNA+I+ K+GK+ + +L
Sbjct: 292 NVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLH 351
Query: 318 ELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377
E MIQR ++PDT+TYN L++GFC+ R+ A+++F MVSK C ++ +YN LIN CK
Sbjct: 352 EEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKC 411
Query: 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTF 437
++VED V L+REM + + +TY T++ G FQ G+ A + +M N V D T+
Sbjct: 412 KRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTY 471
Query: 438 ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497
+ + GLC G + A+ +F+ ++ + EL I YN +I G+CK G++ A LF L
Sbjct: 472 SILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSI 531
Query: 498 KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557
K PDVVT +TMI LC + + +A+DL M+ +P+ T+ TL+R +++ ++
Sbjct: 532 K---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAA 588
Query: 558 VVVLLHKM 565
L+ +M
Sbjct: 589 SAELIKEM 596
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 166/483 (34%), Positives = 270/483 (55%)
Query: 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRI 142
+ +I++ + ++ S ++ G PD + N L+N LC S A ++ R+
Sbjct: 125 TLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRM 184
Query: 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNT 202
+ P +T N L+NGLC G++ +A L ++ PN VT+ ++N +C++ T
Sbjct: 185 VEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244
Query: 203 LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITY 262
+A++L +M E I K D V Y+ IIDGLCKDG +D A L +M+ + ++ITY
Sbjct: 245 ALAMELLRKM--EERNI-KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITY 301
Query: 263 NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ 322
N+LI GFC W + L +M+ + P+VVTF+ +I+ K+GK+ + ++LL+ M+Q
Sbjct: 302 NTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ 361
Query: 323 RGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVED 382
RG+ P+T+TYNSL+DGFC R+ A ++ M+SKGC D+ ++NILIN CK +++D
Sbjct: 362 RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDD 421
Query: 383 AVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442
+ L+REM + + +TYNTL+ G Q G L A KL +M V PD ++ +D
Sbjct: 422 GLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLD 481
Query: 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP 502
GLC NG + +A+++F I K EL I Y +I+G+C ++ A LF L KG
Sbjct: 482 GLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKL 541
Query: 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562
D + MI LC++ + KA+ L M + P E+T+ L+R + ++ + L+
Sbjct: 542 DARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELI 601
Query: 563 HKM 565
+M
Sbjct: 602 EEM 604
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 603 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-23 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-23 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-35
Identities = 106/405 (26%), Positives = 183/405 (45%), Gaps = 14/405 (3%)
Query: 48 AKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRL 107
AKF K + EA F K+ +P +++F +L+++ A ++ D + + + +
Sbjct: 410 AKFFKACKKQRAVK--EAFRF----AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLV 463
Query: 108 NSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRI 167
GL D + LI+ K G F V ++ + N TF LI+G G++
Sbjct: 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
Query: 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTY 227
+A + + P+ V FN LI+ ++ A + EM E I PD +T
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI-DPDHITV 582
Query: 228 NSIIDGLCKDGFVDKAKELLLQMKDRNIN--PNVITYNSLICGFCC-VDDWKEAKCLFIE 284
+++ G VD+AKE+ + + NI P V T + C DW A ++ +
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT---IAVNSCSQKGDWDFALSIYDD 639
Query: 285 MMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344
M GV+PD V F+A+++ G +DK +L+ ++G+ TV+Y+SLM
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 345 ISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNT 404
+A EL+ + S R V + N LI A C+ ++ A+ + EM + P+ ITY+
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 405 LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF 449
LL + + L L+ + + + + P+ I GLC F
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCLRRF 803
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 89/391 (22%), Positives = 181/391 (46%), Gaps = 16/391 (4%)
Query: 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222
+ + EA R K + P + TFN L++ +++ AL++ +V E G K
Sbjct: 418 KQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGL--KA 470
Query: 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCL- 281
D Y ++I K G VD E+ +M + + NV T+ +LI G C + AK
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG--CARAGQVAKAFG 528
Query: 282 -FIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDG 338
+ M V+PD V FNA+I+ + G +D+ +L M ++PD +T +LM
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 339 FCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPS 398
G++ RA+E++ + + Y I +N+ + + A+ +Y +M + ++P
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 399 VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQ 458
+ ++ L+ G+L A +++ + + + ++++ + +A+++++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 459 AIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG 518
I++ K + T N LI LC+ +L A ++ ++ G P+ +T S ++ ++
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 519 QMDKANDLLLDMEAK-NCVPSEVTFCTLLRG 548
D DLL +AK + + + C + G
Sbjct: 769 DADVGLDLL--SQAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-23
Identities = 124/536 (23%), Positives = 223/536 (41%), Gaps = 31/536 (5%)
Query: 64 EAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVL-NLL 122
A Y F M P + S+ +L+ AK +D + L+ R+ G+ PD++ +L
Sbjct: 139 HAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 123 INCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC 182
C + G V ++R F + N LI G ++ A +F ++ C
Sbjct: 195 RTCGGIPDLARGREVHA-HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253
Query: 183 DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK 242
+++N +I+G L L+LF M PD++T S+I G
Sbjct: 254 ----ISWNAMISGYFENGECLEGLELFFTMRELS---VDPDLMTITSVISACELLGDERL 306
Query: 243 AKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302
+E+ + +V NSLI + + W EA+ +F M D V++ AMI+
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMIS 362
Query: 303 YNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRH 362
K+G DK LM Q V+PD +T S++ +G + +L KG
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLI 422
V N LI K + ++ A+ ++ + VI++ ++++GL +AL
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISWTSIIAGLRLNNRCFEALIFF 478
Query: 423 DKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETY--NCLINGLC 480
+M L + P+S T + + G ++ ++ + + + + + N L++
Sbjct: 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV--LRTGIGFDGFLPNALLDLYV 535
Query: 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540
+ GR+ A F+ K DVV+ + ++ G+ A +L M P EV
Sbjct: 536 RCGRMNYAWNQFN-SHEK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLN 596
TF +LL ++ ++ + H M + + +L + VVDLL + K E N
Sbjct: 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-23
Identities = 102/475 (21%), Positives = 186/475 (39%), Gaps = 79/475 (16%)
Query: 91 LAKNKQYDTVVSLFKRLNSNGLFP-DLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTP 149
L ++ + LF+ L + F + L+ + V + S F P
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLF 209
+ N ++ G +++A RLF ++ + N+ ++ T+I GL N A LF
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 210 EEMVNEFGAICKPDVV-------------------------------TYNS--IIDGLCK 236
EM + +P T+ S +ID K
Sbjct: 213 REMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 237 DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVT 296
G ++ A+ + M ++ + +NS++ G+ +EA CL+ EM D+GV D T
Sbjct: 272 CGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 297 FNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMV 356
F+ MI + ++ + +I+ G D V +L+D + GR+ AR +F M
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 357 SKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLG 416
R ++ S+N LI + AV ++ M++E + P+ +T+ +LS G
Sbjct: 388 ----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 417 DALKLIDKM-QLNDVVPDSFTFATYIDGLCKNGFVLEA------------VQVFQAIRN- 462
++ M + + + P + +A I+ L + G + EA V ++ A+
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503
Query: 463 CKC----EL--------------RIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499
C+ EL ++ Y L+N GR A K+ L+ KG
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 3e-19
Identities = 85/391 (21%), Positives = 156/391 (39%), Gaps = 53/391 (13%)
Query: 158 INGLCAEGRIMEAARLFKKLNV-FACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE- 215
I L A GR EA LF+ L T++ L+ ++ ++ + +
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 216 FGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW 275
F +PD N ++ K G + A+ L +M +RN+ ++ ++I G ++
Sbjct: 154 F----EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNY 205
Query: 276 KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSL 335
+EA LF EM ++G + TF M+ R
Sbjct: 206 REAFALFREMWEDGSDAEPRTFVVML---------------------RASAG-------- 236
Query: 336 MDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERI 395
+G ++L ++ G D + LI+ K +EDA C++ M
Sbjct: 237 ------LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----P 286
Query: 396 RPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQ 455
+ + +N++L+G G +AL L +M+ + V D FTF+ I + + A Q
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 456 VFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515
+ L I L++ K GR++ A +F R+ P ++++ + +I
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNLISWNALIAGYG 402
Query: 516 KEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546
G+ KA ++ M A+ P+ VTF +L
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 1e-18
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 222 PDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC 270
PDVVTYN++IDG CK G V++A +L +MK R I PNV TY+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 2e-17
Identities = 98/451 (21%), Positives = 180/451 (39%), Gaps = 65/451 (14%)
Query: 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNT----LVALKLFEEMV 213
+ LC+ G++ +A +L + + + + L LC +
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSH 116
Query: 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD 273
G V N+++ + G + A + +M +R+ + ++N L+ G+
Sbjct: 117 PSLG------VRLGNAMLSMFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAKAG 166
Query: 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMD-KVNRLLELMIQR-GVNPDTVT 331
+ EA CL+ M+ GV+PDV TF ++ C G D R + + R G D
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLR-TCG-GIPDLARGREVHAHVVRFGFELDVDV 224
Query: 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREML 391
N+L+ + G + AR +F M R D S+N +I+ ++ + + + L+ M
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 392 SERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC-KNGFV 450
+ P ++T +++S LGD + G K GF
Sbjct: 281 ELSVDPDLMTITSVISA---CELLGDE-----------------RLGREMHGYVVKTGFA 320
Query: 451 LEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510
++ + N LI +G A K+F R++ K D V+ + M
Sbjct: 321 VD----------------VSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAM 360
Query: 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570
I K G DKA + ME N P E+T ++L V V LH++A K
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA-CACLGDLDVGVKLHELAERKG 419
Query: 571 VVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601
++S + +++ ++++ SK K + L F ++
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 4e-16
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 184 PNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK 236
P+VVT+NTLI+G C+ ALKLF EM G KP+V TY+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-G--IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 4e-16
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 292 PDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFC 340
PDVVT+N +I+ CK GK+++ +L M +RG+ P+ TY+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 5e-16
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 327 PDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK 376
PD VTYN+L+DG+C G++ A +LF M +G + +VY+Y+ILI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 9e-15
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549
PDVVT +T+I CK+G++++A L +M+ + P+ T+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-14
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 257 PNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK 306
P+V+TYN+LI G+C +EA LF EM G++P+V T++ +I+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 8e-14
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 149 PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR 198
P+ VT+N LI+G C +G++ EA +LF ++ PNV T++ LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 62/282 (21%), Positives = 123/282 (43%), Gaps = 51/282 (18%)
Query: 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFI 283
VV N++I+ K +DKA E+ + +++ VI++ S+I G + EA +F
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGLRLNNRCFEA-LIFF 478
Query: 284 EMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVG 343
M ++P+ VT A ++ + G + + +++ G+ D N+L+D + G
Sbjct: 479 RQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538
Query: 344 RISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYN 403
R++ A F N++ KD V+++N
Sbjct: 539 RMNYAWNQF-------------------NSHEKD---------------------VVSWN 558
Query: 404 TLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIR-N 462
LL+G G A++L ++M + V PD TF + + ++G V + ++ F ++
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
Query: 463 CKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD 503
++ Y C+++ L + G+L A +++ PI PD
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPD 656
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 3e-13
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK 446
P V+TYNTL+ G + G + +ALKL ++M+ + P+ +T++ IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516
TYN LI+G CK G+++ A KLF+ ++ +G P+V T S +I LCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGL 409
DV +YN LI+ CK KVE+A+ L+ EM I+P+V TY+ L+ GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 4e-11
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 220 CKPDVVTYNSIIDGLCKDGFVDKAKELLLQMK 251
KPDVVTYN++IDGLC+ G VD+A ELL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 79/353 (22%), Positives = 137/353 (38%), Gaps = 54/353 (15%)
Query: 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD-LFVLNLLINCLCKMGITSGAFVVLGR 141
S+T +++ KN D + + + + + PD + + ++L C C + G V L
Sbjct: 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG--VKLHE 413
Query: 142 I-LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTR 200
+ R V N LI I +A +F + + +V+++ ++I GL
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNN 469
Query: 201 NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVI 260
AL F +M+ KP+ VT + + + G + KE+ + I +
Sbjct: 470 RCFEALIFFRQML----LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 261 TYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELM 320
N+L+ + A F N + DVV++N ++ GK L M
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 321 IQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380
++ GVNPD VT+ SL+ G +++ E F SM K YS
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK------YS-------------- 620
Query: 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD 433
I P++ Y ++ L + G L +A I+KM + PD
Sbjct: 621 --------------ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPD 656
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 8e-09
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 182 CDPNVVTFNTLINGLCRTRNTLVALKLFEEMV 213
P+VVT+NTLI+GLCR A++L +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 323 RGVNPDTVTYNSLMDGFCLVGRISRARELFVSMV 356
+G+ PD VTYN+L+DG C GR+ A EL M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCK 481
PD T+ T IDG CK G V EA+++F ++ + + TY+ LI+GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 225 VTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNV 259
VTYN++IDGLCK G V++A EL +MK+R I P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 8e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 358 KGCRHDVYSYNILINANCKDQKVEDAVCLYREM 390
KG + DV +YN LI+ C+ +V++AV L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 114 PDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC 162
PD+ N LI+ CK G A + + + PN T++ LI+GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 225 VTYNSIIDGLCKDGFVDKAKELLLQMKDRNI 255
VTYNS+I G CK G +++A EL +MK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 147 FTPNTVTFNFLINGLCAEGRIMEAARLFKK 176
P+ VT+N LI+GLC GR+ EA L +
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 498 KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531
KG PDVVT +T+I LC+ G++D+A +LL +ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 260 ITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDV 294
+TYN+LI G C +EA LF EM + G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-06
Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 395 IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQ 426
++P V+TYNTL+ GL + G + +A++L+D+M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 330 VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDV 364
VTYN+L+DG C GR+ A ELF M +G DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539
VT +T+I LCK G++++A +L +M+ + P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 330 VTYNSLMDGFCLVGRISRARELFVSMVSKGC 360
VTYNSL+ G+C G++ A ELF M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 253 RNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285
+ + P+V+TYN+LI G C EA L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 288 NGVQPDVVTFNAMINYNCKDGKMDKVNRLLELM 320
G++PDVVT+N +I+ C+ G++D+ LL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDV 504
TYN LI+GLCK GR++ A +LF ++ +G PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 428 NDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457
+ PD T+ T IDGLC+ G V EAV++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 79 PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128
P + ++ L+ K + + + LF + G+ P+++ ++LI+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 5e-05
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 471 TYNCLINGLCKMGRLKTACKLF 492
TYN LI+GLC+ GR+ A +L
Sbjct: 9 TYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 400 ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS 434
+TYNTL+ GL + G + +AL+L +M+ + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 260 ITYNSLICGFCCVDDWKEAKCLFIEMMDNGV 290
+TYNSLI G+C +EA LF EM + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 471 TYNCLINGLCKMGRLKTACKLFHRLQHKG 499
TYN LI+G CK G+L+ A +LF ++ KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 187 VTFNTLINGLCRTRNTLVALKLFEEMVNE 215
VT+N+LI+G C+ AL+LF+EM +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 2e-04
Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 5/231 (2%)
Query: 297 FNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTV-TYNSLMDGFCLVGRISRARELFVSM 355
A + G++ + LLE ++ N D L +GR+ A EL
Sbjct: 26 LEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKA 85
Query: 356 VSKGCR-HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGN 414
+ + + L K E+A+ L + L+ P + L L+++G+
Sbjct: 86 LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD 145
Query: 415 LGDALKLIDKMQLNDVVPDSFTFATYIDG--LCKNGFVLEAVQVFQAIRNCKCELRIETY 472
+AL+L +K D + A G L G EA+++ + + E
Sbjct: 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205
Query: 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKA 523
L K+G+ + A + + + P + + L + G+ ++A
Sbjct: 206 LNLGLLYLKLGKYEEALEYYEKALELDP-DNAEALYNLALLLLELGRYEEA 255
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 295 VTFNAMINYNCKDGKMDKVNRLLELMIQRGV 325
VT+N++I+ CK GK+++ L + M ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 46/261 (17%), Positives = 91/261 (34%), Gaps = 7/261 (2%)
Query: 64 EAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKR-LNSNGLFPDLFVLNLL 122
A+ + + + L +L + + L + L +L LL
Sbjct: 6 LALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLL 65
Query: 123 INCLCKMGITSGAFVVLGRILRSCFTPN-TVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181
L K+G A +L + L PN L L A G+ EA L +K
Sbjct: 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD 125
Query: 182 CDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241
DP++ + L + AL+L+E+ + + ++ L G +
Sbjct: 126 PDPDLAEALLALGALYELGDYEEALELYEKALELDPEL-NELAEALLALGALLEALGRYE 184
Query: 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMI 301
+A ELL + N + + +L + + ++EA + + ++ D A+
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL----DPDNAEALY 240
Query: 302 NYNCKDGKMDKVNRLLELMIQ 322
N ++ + LE + +
Sbjct: 241 NLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDV 224
VT+NTLI+GLC+ AL+LF+EM +PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG---IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP 327
+ T+NA++ K G D +LE M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINP 257
+ TYN+++ L K G D A +L +MK + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 365 YSYNILINANCKDQKVEDAVCLYREMLSERIRPSV 399
+YN LI+ CK +VE+A+ L++EM I P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535
VT +++I CK G++++A +L +M+ K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 295 VTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDT 329
VT+N +I+ CK G++++ L + M +RG+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 365 YSYNILINANCKDQKVEDAVCLYREMLSERI 395
+YN LI+ CK K+E+A+ L++EM + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKG 499
+ETYN L+ L K G A + ++ G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 400 ITYNTLLSGLFQVGNLGDALKLIDKMQLNDV 430
+TYN+L+SG + G L +AL+L +M+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 603 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.79 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.76 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.72 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.72 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.63 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.57 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.53 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.53 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.53 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.51 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.43 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.43 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.32 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.31 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.27 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.25 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.24 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.22 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.21 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.19 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.14 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.1 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.09 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.07 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.02 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.02 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.97 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.92 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.91 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.74 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.72 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.7 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.59 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.35 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.35 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.28 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.22 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.21 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.19 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.14 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.05 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.04 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.04 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.98 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.9 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.84 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.76 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.7 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.66 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.61 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.6 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.51 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.5 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.47 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.44 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.43 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.42 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.39 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.39 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.38 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.23 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.16 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.08 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.99 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.99 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.97 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.92 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.9 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.67 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.66 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.52 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.5 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.41 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.36 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.26 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.25 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.22 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.19 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.17 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.1 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.96 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.94 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.93 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.71 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.6 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.55 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.51 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.34 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.17 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.06 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.91 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.84 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.83 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.64 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.88 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.49 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.46 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.36 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.21 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.78 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.73 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.46 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.44 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.39 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.15 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.04 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.03 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.02 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.92 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.9 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.71 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.68 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.6 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.02 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.86 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.62 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.54 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.47 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.23 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.1 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.09 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.05 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.91 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 89.91 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.89 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.64 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.49 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.33 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.8 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.46 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 88.37 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.09 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.99 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.73 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.63 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.57 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.46 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.32 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.99 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.9 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.74 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.7 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.6 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 86.51 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.06 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.04 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.0 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.48 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.4 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 85.2 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.18 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.16 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.93 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.83 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.11 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.67 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.55 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.49 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.12 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.68 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.37 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 81.6 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 81.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.76 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.56 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 80.25 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-72 Score=592.44 Aligned_cols=519 Identities=23% Similarity=0.305 Sum_probs=503.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|+++.|+++|++| +.||+.+|+.++.+|.+.|++++|+++|++|...|+.||..+|+.++.+|...++++.+.+
T Consensus 133 ~~g~~~~A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 578999999999999 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
++..+.+.|+.|+..++|.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g- 283 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS- 283 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-
Confidence 99999999999999999999999999999999999999997 6799999999999999999999999999999987
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
..||..+|+.++.+|.+.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|
T Consensus 284 --~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~ 357 (857)
T PLN03077 284 --VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSW 357 (857)
T ss_pred --CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeH
Confidence 8999999999999999999999999999999999999999999999999999999999999999986 5799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+++.+.+++
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999875 5889999999999999999999999999986 58999999999999999999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP 537 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (603)
..+.+.|+.++..+++.|+.+|+++|++++|.++|+.+ .||..+|+.++.+|+++|+.++|+++|++|.+.|+.|
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999987 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMA-AEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|..||..++.+|.+.|++++|.++++.|. +.++. |+..+|..++++|.+.|+++||.+++++|+
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-PNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999 67888 999999999999999999999999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=553.51 Aligned_cols=507 Identities=19% Similarity=0.297 Sum_probs=429.2
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 59 NITSNEAVYFFDCMIKMKP-SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
.|++++|+++|++|...+. .++...++.++..|.+.|..++|..+|+.|.. ||..+|+.++.+|++.|+++.|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 5788888888888877663 35666777888888888888888888888863 788888888888888888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
+|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G- 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN- 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKD--RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVV 295 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 295 (603)
..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..
T Consensus 538 --v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 538 --VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 788888888888888888888888888888875 5678888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 037409 296 TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANC 375 (603)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (603)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHH
Q 037409 376 KDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQ 455 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 455 (603)
+.|++++|.++|++|...+..||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHh----C-------------------CChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 037409 456 VFQAIRNCKCELRIETYNCLINGLCK----M-------------------GRLKTACKLFHRLQHKGPIPDVVTCSTMIH 512 (603)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 512 (603)
++++|.+.|+.|+..+|+.++..|.+ + +..+.|..+|++|.+.|+.||..+|+.++.
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLG 855 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 88888888888888888888765432 1 123568888888888888888888888887
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCH
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDL 575 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 575 (603)
+++..+..+.+..+++.|...+..|+..+|..++.++.+. .++|..++++|.+.|+. |+.
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~-p~~ 915 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV-PSV 915 (1060)
T ss_pred HhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC-CCc
Confidence 7777788888888888887777778888888888877322 35788888888888877 554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-68 Score=550.26 Aligned_cols=527 Identities=17% Similarity=0.250 Sum_probs=492.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 037409 64 EAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGL-FPDLFVLNLLINCLCKMGITSGAFVVLGRI 142 (603)
Q Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 142 (603)
.++...+.... +.++...|..++..+.+.|++++|+++|++|.+.|+ +++..++..++..|.+.|..++|..+++.|
T Consensus 355 ~~~~~~~~~~~--~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 355 NSLAAYNGGVS--GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhHHHhccccC--CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 34444444433 456778899999999999999999999999999985 467778888999999999999999999888
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
.. |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.+ ..|
T Consensus 433 ~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~P 505 (1060)
T PLN03218 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG---VEA 505 (1060)
T ss_pred CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC
Confidence 64 89999999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHH
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD--NGVQPDVVTFNAM 300 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l 300 (603)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.+
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 5789999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 460 (603)
++|.++|++|.+.|..|+..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----c-------------------
Q 037409 461 RNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----E------------------- 517 (603)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------------------- 517 (603)
.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999866432 1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHH
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 597 (603)
+..++|..+|++|++.|+.||..+|..++.++...+..+.+..+++.|...+.. |+..+|..+++.+.+. .++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~-~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS-QKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC-cchhhhHHHHHhhccC--hHHHHHH
Confidence 123679999999999999999999999998888999999999999988766666 8899999999988432 3689999
Q ss_pred HHhhc
Q 037409 598 FRHLL 602 (603)
Q Consensus 598 ~~~~l 602 (603)
++.|.
T Consensus 903 ~~em~ 907 (1060)
T PLN03218 903 LEEAA 907 (1060)
T ss_pred HHHHH
Confidence 99885
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=556.42 Aligned_cols=521 Identities=19% Similarity=0.273 Sum_probs=418.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++++|+.+|++|...+..||..+|+.++.++.+.+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|..
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
+|++|. .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..+.+.+
T Consensus 244 lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g- 318 (857)
T PLN03077 244 VFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG- 318 (857)
T ss_pred HHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-
Confidence 999985 468899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
..||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|
T Consensus 319 --~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 319 --FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred --CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 889999999999999999999999999999864 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
+.++.+|++.|+++.+.++++.+.+.|..|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999864 4788999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
|+.++|+.+|++|.. +..||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999975 4888888888888777777777777777777766666555555555555555555555555554
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME-AKNCV 536 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 536 (603)
+.+ ++|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 443 344455555555555555555555555555555555555555555555555555555555555554 33445
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------HHHCCCCCCCHHHHHHHHHH
Q 037409 537 PSEVTFCTLLRGFVQNNKKSKVVVLLHK--------------------------------MAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~l~~~ 584 (603)
|+..+|..++.+|.+.|++++|.+++++ +.+..+ .+...|..+.++
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p--~~~~~y~ll~n~ 700 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP--NSVGYYILLCNL 700 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCcchHHHHHHH
Confidence 5555555555555555555555555544 444322 356667777777
Q ss_pred HHcCCcHHHHHHHHHhh
Q 037409 585 LSKDKKYRECLNQFRHL 601 (603)
Q Consensus 585 ~~~~g~~~eA~~~~~~~ 601 (603)
|.+.|+|++|.++.+.|
T Consensus 701 ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 701 YADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHCCChHHHHHHHHHH
Confidence 77788888887777766
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=518.60 Aligned_cols=474 Identities=18% Similarity=0.267 Sum_probs=454.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 79 PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG-LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 79 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
.+..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.+.+++..+.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456689999999999999999999999998764 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+ ..|+..+|+.++.++.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCChhhHHHHHHHHhcC
Confidence 999999999999999999997 6899999999999999999999999999999887 889999999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 569999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037409 318 ELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRP 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 397 (603)
++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999965 6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN-CKCELRIETYNCLI 476 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 476 (603)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|++++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
.+|++.|++++|.+++++|. ..|+..+|+.++.+|..+|+++.|..+++++.+.+ +.+..+|..+++.|.+.|+++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHH
Confidence 99999999999999998764 67999999999999999999999999999998764 445778999999999999999
Q ss_pred HHHHHHHHHHHCCCC
Q 037409 557 KVVVLLHKMAAEKLV 571 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~ 571 (603)
+|.++++.|.+.|+.
T Consensus 546 ~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 546 EAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=495.63 Aligned_cols=470 Identities=18% Similarity=0.246 Sum_probs=449.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHH
Q 037409 113 FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSC-FTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNT 191 (603)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 191 (603)
..+...++.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4456689999999999999999999999998865 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 037409 192 LINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC 271 (603)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (603)
++..|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 9999999999999999999995 479999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037409 272 VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 272 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 351 (603)
.|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 35889999999999999999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV 431 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (603)
|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh-CCCCCCHhHHHHH
Q 037409 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH-KGPIPDVVTCSTM 510 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l 510 (603)
||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 688999999999999999999999999999999999999999999999999999999999999986 6899999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
+.+|++.|++++|.+++++| ++.|+..+|..|+.+|...|+++.|..+++++.+.++ .+...|..++++|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p--~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP--EKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC--CCCcchHHHHHHHHhCCC
Confidence 99999999999999999876 4689999999999999999999999999999986544 477899999999999999
Q ss_pred HHHHHHHHHhhc
Q 037409 591 YRECLNQFRHLL 602 (603)
Q Consensus 591 ~~eA~~~~~~~l 602 (603)
+++|.++++.|.
T Consensus 544 ~~~A~~v~~~m~ 555 (697)
T PLN03081 544 QAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=338.35 Aligned_cols=523 Identities=12% Similarity=0.055 Sum_probs=389.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|++++|...|++++..+|. +...|..+...+...|++++|+..|+.+.+.+ +........++..+.+.|++++|..+
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 34455555555554444332 34444444444445555555555555544432 22223333444455555555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++...
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 528 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--- 528 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 55555442 2355566777777777777777777777766543 334556666677777777777777777777765
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037409 219 ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFN 298 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 298 (603)
.+.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...|++++|..+++.+.+.. +.+...|.
T Consensus 529 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 -DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred -CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 34566677777777777777777877777776653 3355667777788888888888888888877653 55677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 037409 299 AMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ 378 (603)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (603)
.+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888876643 355667778888888888888888888887763 335667778888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 037409 379 KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQ 458 (603)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 458 (603)
++++|..+++.+..... .+...+..+...+...|++++|...++.+.... |+..++..++.++...|++++|.+.++
T Consensus 684 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888877643 466777888888889999999999999888764 344667778888999999999999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 037409 459 AIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS 538 (603)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 538 (603)
.+.+.. +.+...+..++..|...|++++|...|+++.+.++. +...++.++..+...|+ ++|+.+++++.+.. +.+
T Consensus 761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~ 836 (899)
T TIGR02917 761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNI 836 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCC
Confidence 988765 668889999999999999999999999999988665 78889999999999999 88999999999874 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 539 EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.++..++.++...|++++|.++++++++.++. ++.++..++.+|.+.|++++|++++++|+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 778889999999999999999999999997765 89999999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=328.31 Aligned_cols=524 Identities=13% Similarity=0.052 Sum_probs=388.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++++|+..+++++...|. +...+..++..+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHH
Confidence 345555555555555554332 44555555555666666666666666655543 3344455555555556666666666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
.++.+.+..+. +......++..+.+.|++++|..+++++.... +++..+|..+...+...|++++|.+.|+++.+.
T Consensus 419 ~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 494 (899)
T TIGR02917 419 DLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-- 494 (899)
T ss_pred HHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--
Confidence 66655554332 23344445556666666666766666665542 445667777777788888888888888887765
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
.+.+...+..++..+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+
T Consensus 495 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 570 (899)
T TIGR02917 495 --EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPA 570 (899)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHH
Confidence 24556667777777788888888888888877653 3366777778888888888888888888877664 4456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
..++..+.+.|++++|..+++.+.+.. +.+...+..++..+...|++++|.+.++.+.+.. +.+...+..+..++.+.
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 778888888888888888888887654 3466778888888888888888888888887764 33556677788888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
|++++|...|+++....+ .+..++..++..+...|++++|..+++.+....+ .+...+..+...+...|++++|...|
T Consensus 649 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888877533 3567788888888888889999888888877653 36667777888888899999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP 537 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (603)
+.+.... |+..++..++.++.+.|++++|...++++.+..+. +...+..++..|...|++++|...|+++.+.+ ++
T Consensus 727 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~ 802 (899)
T TIGR02917 727 RKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PD 802 (899)
T ss_pred HHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CC
Confidence 8888754 34467778888899999999999999998887665 78888889999999999999999999999875 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..++..++..+...|+ .+|+.+++++.+..+. ++..+..++.++...|++++|.+++++++
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN--IPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888899999999999 8899999999886554 77788889999999999999999998875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-29 Score=271.57 Aligned_cols=537 Identities=14% Similarity=0.051 Sum_probs=389.2
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-----------
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVL----------- 119 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------- 119 (603)
-+.++-...++.+.|.+.+++++..+|. ++..+..++..+.+.|+.++|.+.++++.+.. |.+....
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCC
Confidence 3344455678999999999999998776 78888999999999999999999999998875 4444432
Q ss_pred -----HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 037409 120 -----NLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLIN 194 (603)
Q Consensus 120 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
......+...|++++|.+.++++.+..++........+.......|+.++|++.++++.+.. +.+...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 23345688899999999999999877543222222222222334689999999999998863 446667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCc-------------cC----------------CChhhH------------------
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAI-------------CK----------------PDVVTY------------------ 227 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~----------------~~~~~~------------------ 227 (603)
.+...|+.++|++.++++....... .+ |+....
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999998876432000 00 000000
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH------
Q 037409 228 ---NSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP-DVVTF------ 297 (603)
Q Consensus 228 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~------ 297 (603)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 012345677899999999999988763 3377888999999999999999999999988764221 11112
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHH-
Q 037409 298 ------NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNIL- 370 (603)
Q Consensus 298 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 370 (603)
......+.+.|++++|...++++.+..+ .+...+..+...+...|++++|++.|+++++... .+...+..+
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 1224467788999999999999988753 3566777888899999999999999999887631 122222222
Q ss_pred -----------------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037409 371 -----------------------------------------INANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGL 409 (603)
Q Consensus 371 -----------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (603)
...+...|++++|++.|++.++..+. +...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 23345678888888888888876433 556677788888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH--------------------------------------------HH
Q 037409 410 FQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG--------------------------------------------LC 445 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------------~~ 445 (603)
.+.|++++|...++++.+..+. +...+..+... +.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 8899999999999888764332 23222222222 33
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 037409 446 KNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAND 525 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 525 (603)
..|+.++|.++++ ..+.++..+..+...+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444443 12556667788888899999999999999999987665 78888899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 526 LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVV-S---DLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.++++.+.. +.+..++..++.++...|++++|.+++++++...... | +...+..++.++.+.|++++|++.|++.
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888764 4456677888889999999999999999998754431 2 2346667788999999999999998876
Q ss_pred c
Q 037409 602 L 602 (603)
Q Consensus 602 l 602 (603)
+
T Consensus 738 l 738 (1157)
T PRK11447 738 M 738 (1157)
T ss_pred H
Confidence 4
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-26 Score=238.67 Aligned_cols=524 Identities=12% Similarity=0.010 Sum_probs=363.3
Q ss_pred HHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037409 48 AKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLC 127 (603)
Q Consensus 48 ~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (603)
..|..+......|++++|+..|++++..+|. +..++..++..|.+.|++++|+..++++++.+ |.|...+..+ ..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i- 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh-
Confidence 3467777777789999999999999999988 59999999999999999999999999999885 4445555444 222
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH--------HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH-HHHHHh
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTVTFNFLING--------LCAEGRIMEAARLFKKLNVFACDPNVVTFNTL-INGLCR 198 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 198 (603)
+++++|..+++++.+..+. +..++..+... |.+.+...++++ .......|+..+.... ...|.+
T Consensus 122 --~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred --ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999998655 55666666555 555544444444 2222223345544444 888888
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK-DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKE 277 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (603)
.|++++|++.++++.+.+ +.+......+...|.. .++ +++..+++. ..+.++..+..++..|.+.|+.++
T Consensus 195 l~dw~~Ai~lL~~L~k~~----pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN----TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HhCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999888863 3444445566666666 355 666666443 222466777777777777777777
Q ss_pred HHHHHHHHHHCCCC-CCHH-------------------------------------------------------------
Q 037409 278 AKCLFIEMMDNGVQ-PDVV------------------------------------------------------------- 295 (603)
Q Consensus 278 A~~~~~~~~~~~~~-~~~~------------------------------------------------------------- 295 (603)
|..+++++...-.. |...
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 77777665422100 1111
Q ss_pred --------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHh
Q 037409 296 --------------------------------TFNAMINYNCKDGKMDKVNRLLELMIQR-G-VNPDTVTYNSLMDGFCL 341 (603)
Q Consensus 296 --------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~ 341 (603)
....+.....+.|+.++|.++++..... + ..++.....-++..|.+
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 1111111223344445555555544431 0 11122233345555555
Q ss_pred cCC---HHHHHHH----------------------HHHHHHc-CC-CC--CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037409 342 VGR---ISRAREL----------------------FVSMVSK-GC-RH--DVYSYNILINANCKDQKVEDAVCLYREMLS 392 (603)
Q Consensus 342 ~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (603)
.+. ..++..+ +...... +. ++ +...+..+..++.. ++.++|+..+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 443 2222221 1111111 11 22 44556666666665 788889998887776
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHH
Q 037409 393 ERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETY 472 (603)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 472 (603)
.. |+......+...+...|++++|...++++... .|+...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus 505 ~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~ 579 (987)
T PRK09782 505 RQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALY 579 (987)
T ss_pred hC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHH
Confidence 53 45443334445556899999999999987654 3344455667778889999999999999998765 4445555
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
..+.....+.|++++|...+++.++.. |+...|..++.++.+.|++++|+..++++++.. |.+...+..++.++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 555555566799999999999999864 467788999999999999999999999999986 66778889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 553 NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 553 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|++++|+..++++++..+. ++..+..++.++...|++++|+..+++.+
T Consensus 657 G~~eeAi~~l~~AL~l~P~--~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPD--DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999987765 88999999999999999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-26 Score=250.34 Aligned_cols=503 Identities=14% Similarity=0.061 Sum_probs=366.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh----------
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVT---------- 153 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---------- 153 (603)
....++.....++.+.|.+.+.++.... +.++.++..++..+...|+.++|.+.++++.+..+. +...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 5566777888999999999999999876 668889999999999999999999999999998654 2222
Q ss_pred ------HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhh
Q 037409 154 ------FNFLINGLCAEGRIMEAARLFKKLNVFACDPNVV-TFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVT 226 (603)
Q Consensus 154 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (603)
...+...+.+.|++++|.+.|+++.... +|+.. ............|+.++|++.++++.+. .|.+...
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~----~P~~~~~ 183 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD----YPGNTGL 183 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh----CCCCHHH
Confidence 2334557888999999999999998763 34432 1112222233469999999999999997 3567778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC------------------C--------------CChhhH------------
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMKDRNI------------------N--------------PNVITY------------ 262 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~------------ 262 (603)
+..+...+...|+.++|++.++++..... . |+....
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999999998754310 0 110000
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhH
Q 037409 263 ---------NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDT-VTY 332 (603)
Q Consensus 263 ---------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 332 (603)
......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...|++..+....... ..+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 012345667899999999999998874 447888999999999999999999999999876543211 111
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 037409 333 ------------NSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI 400 (603)
Q Consensus 333 ------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 400 (603)
......+.+.|++++|++.|+++++.. +.+...+..+..++...|++++|++.|+++++.... +..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 122456778999999999999999874 335567778889999999999999999999876332 233
Q ss_pred hHHHHH------------------------------------------HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 037409 401 TYNTLL------------------------------------------SGLFQVGNLGDALKLIDKMQLNDVVPDSFTFA 438 (603)
Q Consensus 401 ~~~~l~------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (603)
.+..+. ..+...|++++|++.+++..+..+. +...+.
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~ 499 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTY 499 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 333222 2344567788888888887765433 455666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh---------------------
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH--------------------- 497 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------- 497 (603)
.+...|.+.|++++|...++++.+.. +.++..+..+...+...++.++|...++.+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 77777888888888888888877644 33444444333334444444444444433211
Q ss_pred -------------------CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 498 -------------------KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 498 -------------------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
..+ ++...+..+...+.+.|++++|+..|+++++.. |.+...+..++..+...|++++|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 111 244456677778888888888888888888875 55677888888888888999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.++++.+..+. ++.....++.++.+.|++++|.+++++++
T Consensus 657 ~~~l~~ll~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 657 RAQLAKLPATAND--SLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHhccCCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9888888765443 66777788888888899999988888764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-25 Score=213.22 Aligned_cols=545 Identities=14% Similarity=0.080 Sum_probs=417.8
Q ss_pred CchhHHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 037409 43 DGTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLL 122 (603)
Q Consensus 43 ~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 122 (603)
++..+.-+..+++....++|..|+.+|..++...|..-+.....+...+++.|+.+.|+..|.++++.+ |.++.++..|
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L 239 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVAL 239 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHH
Confidence 344444567777888899999999999999888776555555666777889999999999999999886 4445555444
Q ss_pred HHHHHh---cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHH
Q 037409 123 INCLCK---MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACD--PNVVTFNTLINGLC 197 (603)
Q Consensus 123 ~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 197 (603)
...-.. ...+..+.+++.+....... |+.+.+.|...|.-.|++..++.+...+...... .-..+|..+.++|.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 433322 23466788888888777544 8889999999999999999999999988764311 12345888999999
Q ss_pred hcCChHHHHHHHHHHHHhcCCccCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---
Q 037409 198 RTRNTLVALKLFEEMVNEFGAICKPD-VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD--- 273 (603)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 273 (603)
..|++++|..+|.+..... +.+ +..+..+...+.+.|+++.+...|+.+.+. .+-+..+...|...|...+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~----~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD----NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred hhccHHHHHHHHHHHHccC----CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhh
Confidence 9999999999999999864 222 445567889999999999999999999886 3446778888888887775
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037409 274 -DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMI----QRGVNPDTVTYNSLMDGFCLVGRISRA 348 (603)
Q Consensus 274 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (603)
..+.|..++.+....- +.|...|-.+...+....-+.. +..|..+. ..+..+.+...|.+...+...|+++.|
T Consensus 394 ~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred HHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 5577888888877664 5577788888777766554443 66665443 445557788899999999999999999
Q ss_pred HHHHHHHHHc---CCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHH
Q 037409 349 RELFVSMVSK---GCRHDV------YSYNILINANCKDQKVEDAVCLYREMLSERIRPS-VITYNTLLSGLFQVGNLGDA 418 (603)
Q Consensus 349 ~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 418 (603)
...|...... ...++. .+-..+...+-..++.+.|.++|..++... |+ +..|.-++......+...+|
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHH
Confidence 9999998775 122232 123345666777889999999999998862 33 23344443333445788899
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHh------------CCCh
Q 037409 419 LKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC-KCELRIETYNCLINGLCK------------MGRL 485 (603)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~ 485 (603)
...++.....+ ..++..+..+...+.....+..|.+-|+.+.+. ...+|+.+...|++.|.+ .+..
T Consensus 550 ~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 550 SLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 99999887653 335666767777888888888888877776653 224677777777776643 2457
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
++|+.+|.+.++.+|. |...-|.++-+++..|++.+|..+|.+..+.. .....+|..++.+|...|+|..|+++|+..
T Consensus 629 ~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998777 88888999999999999999999999999875 456778999999999999999999999998
Q ss_pred HHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 566 AAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.+.-....+.++...|+.++.+.|++.+|.+++.+.
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 866554478999999999999999999999887654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-23 Score=214.68 Aligned_cols=521 Identities=10% Similarity=0.004 Sum_probs=370.4
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC---- 125 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---- 125 (603)
+..++.....|++++|+..+++++..+|. |...+..+... +++++|..+++++.... |.+..++..+...
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~i----~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~ 155 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLAAI----PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQ 155 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHh----ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhcc
Confidence 44444555689999999999999998774 66655555322 88999999999999875 5556666666665
Q ss_pred ----HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH-HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-c
Q 037409 126 ----LCKMGITSGAFVVLGRILRSCFTPNTVTFNFL-INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-T 199 (603)
Q Consensus 126 ----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 199 (603)
|.+. ++|...++ .....+.|+..+.... ...|.+.|++++|+.++.++.+.+ +.+......+..+|.. .
T Consensus 156 ~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 156 NALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred chhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Confidence 5544 45555554 3333334444444444 788888999999999999888875 3344556666667776 3
Q ss_pred CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CChhhH----------------
Q 037409 200 RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNIN-PNVITY---------------- 262 (603)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~---------------- 262 (603)
++ +++..+++.. .+.+...+..++..|.+.|+.++|.++++++...-.. |...+|
T Consensus 231 ~~-~~a~al~~~~-------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 231 LD-DRLLALQSQG-------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred CH-HHHHHHhchh-------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 55 6666664431 3356777778888888888888888777776443111 111111
Q ss_pred --------------HHHHHH------------------------------------------------------------
Q 037409 263 --------------NSLICG------------------------------------------------------------ 268 (603)
Q Consensus 263 --------------~~l~~~------------------------------------------------------------ 268 (603)
..++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL 382 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence 000111
Q ss_pred ---HHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HH
Q 037409 269 ---FCCVDDWKEAKCLFIEMMDN-G-VQPDVVTFNAMINYNCKDGK---MDKVNRL----------------------LE 318 (603)
Q Consensus 269 ---~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~ 318 (603)
..+.|+.++|..+|+..... + -.++......++..|.+.+. ..++..+ ++
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 22345555566666555442 1 12234455577788877765 3333222 11
Q ss_pred HHHHC-CC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037409 319 LMIQR-GV-NP--DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER 394 (603)
Q Consensus 319 ~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 394 (603)
..... +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++...
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 11111 11 23 55677777777766 8888999988888876 355443334455557899999999999998664
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHH
Q 037409 395 IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNC 474 (603)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (603)
+|+...+..+...+.+.|++++|...+++..+..+. ....+..+...+...|++++|...+++..+.. |+...+..
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~ 614 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVA 614 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 344455667778889999999999999999876422 33334344445556799999999999999765 46889999
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
+..++.+.|++++|+..+++..+..|. +...++.++.++...|++++|+..++++++.. |.+...+..++.++...|+
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999998776 78889999999999999999999999999975 5678889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 555 KSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 555 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
+++|+..++++++..+. ...+....++...+..+++.|.+-+++-
T Consensus 693 ~~eA~~~l~~Al~l~P~--~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 693 MAATQHYARLVIDDIDN--QALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHhcCCC--CchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987654 7788888999999999999999887764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-24 Score=200.87 Aligned_cols=384 Identities=13% Similarity=0.067 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh-HHH
Q 037409 186 VVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT-YNS 264 (603)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 264 (603)
..+|..+.+.+-..|+++.|+..++.+++. .+..+..|..+..++...|+.+.|.+.|.+..+. .|+... .+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel----~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL----KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc----CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 344444555555555555555555555543 1333444555555555555555555555544443 222111 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
+.......|++++|...|.+.++.. +--...|..|...+..+|+...|+..|++..+..+. -...|..|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhc
Confidence 2233333455555555554444431 111234555555555555555555555555544211 12345555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 345 ISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDK 424 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (603)
+++|...|.+..... +.....+..+...|...|..+-|+..+++.++..+. =...|+.+..++-..|+..+|...+.+
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 555555555555442 112344444555555556666666666655554221 234556666666666666666666665
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC-
Q 037409 425 MQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD- 503 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 503 (603)
....... .....+.|..++...|.+++|..+|....... +.-....+.|...|.++|++++|+..+++.+.. .|+
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~f 421 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTF 421 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchH
Confidence 5543221 33445556666666666666666666555433 333455566666666666666666666666653 333
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVD 583 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 583 (603)
...|+.++..|-..|+.+.|++.+.+++..+ +.=...+..|+..|-.+|+..+|+.-|+.+++..++ -++.+..++.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD--fpdA~cNllh 498 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD--FPDAYCNLLH 498 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC--CchhhhHHHH
Confidence 4456666666666666666666666666543 222445566666666666666666666666654443 3344444444
Q ss_pred HHH
Q 037409 584 LLS 586 (603)
Q Consensus 584 ~~~ 586 (603)
++.
T Consensus 499 ~lq 501 (966)
T KOG4626|consen 499 CLQ 501 (966)
T ss_pred HHH
Confidence 443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=200.95 Aligned_cols=437 Identities=15% Similarity=0.085 Sum_probs=293.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++.+|.+.-..+-+.+|. +....-.+...+.+..+++.....-....+.. +.-.++|+.+.+.+-..|++++|+.
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~ 137 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALA 137 (966)
T ss_pred hccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHH
Confidence 356777777777766666554 34444455556666666666666555555443 4456677777777777788888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVT-FNTLINGLCRTRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (603)
.++.+++..++ .+..|..+..++...|+.+.|.+.|.+..+. .|+... .+.+...+-..|+.++|...|.+.++.
T Consensus 138 ~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~- 213 (966)
T KOG4626|consen 138 LYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET- 213 (966)
T ss_pred HHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh-
Confidence 88777776543 6677777777777778877787777777665 454443 334555555677777777777777775
Q ss_pred CCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 037409 217 GAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN-VITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVV 295 (603)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 295 (603)
.+--...|+.|...+-..|+...|+.-|++..+. .|+ ...|..|...|...+.+++|+..|.+..... +....
T Consensus 214 ---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 214 ---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred ---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 2334566777777777777777777777777765 232 4567777777777777777777777776653 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 037409 296 TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANC 375 (603)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (603)
.+..+...|-.+|.++.|+..+++.++..+. =+..|+.|..++-..|+..+|...|.+.+... +......+.|...|.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 6666777777777777777777777765322 34567777777777777777777777777653 224456677777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhCCCHHHHH
Q 037409 376 KDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD-SFTFATYIDGLCKNGFVLEAV 454 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 454 (603)
..|.++.|..+|....+..+. -...++.|...|-++|++++|+..+++.+. +.|+ ...++.+...|-..|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence 777777777777777664211 245567777777777777777777777765 3443 346666777777777777777
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 455 QVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
+.+.+.+..+ |.-.+.++.|...|...|++.+|+.-++..++..+. -+..+..++.+
T Consensus 443 q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~ 499 (966)
T KOG4626|consen 443 QCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHH
Confidence 7777776554 444567777777777777777777777777775443 23344444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-23 Score=198.15 Aligned_cols=511 Identities=14% Similarity=0.102 Sum_probs=396.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK---QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGA 135 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 135 (603)
.|+.+.|+..|.++++.+|. ++.++..|...-.... .+..++..+.++-... +.++.+.+.|.+.+.-.|+++.+
T Consensus 212 l~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred ccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHH
Confidence 47888999999999999884 6776666665544444 4666777777776655 67888999999999999999999
Q ss_pred HHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 037409 136 FVVLGRILRSCFTP--NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV--VTFNTLINGLCRTRNTLVALKLFEE 211 (603)
Q Consensus 136 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (603)
..+...++...... -...|-.+.++|-..|++++|...|.+..+. .++. ..+..+++.+...|+.+.+...|+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 99999998864221 2335778999999999999999999998876 4444 4456788999999999999999999
Q ss_pred HHHhcCCccCCChhhHHHHHHHHHhcC----ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 037409 212 MVNEFGAICKPDVVTYNSIIDGLCKDG----FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMM- 286 (603)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 286 (603)
+... .|.+..+...+...|...+ ..+.|..++....+. .+.|...|..+...+...+-+.. +..|....
T Consensus 368 v~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 368 VLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 9997 4667778888888888775 456777777777665 35578888888888866655544 77776554
Q ss_pred ---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 287 ---DNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQR---GVNPDT------VTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 287 ---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
..+-++.+...|.+...+...|++++|...|...... ...+|. .+-..+....-..++.+.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3455678889999999999999999999999988765 122222 2334456666778899999999999
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN-DVVPD 433 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 433 (603)
+++.. +.-+..|-.++.+....+...+|...+++....+- .++..++.+...+.....+..|.+-|..+.+. ...+|
T Consensus 522 Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 522 ILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 99873 22334444454444456788999999999887633 36777888888888888888888877766543 23357
Q ss_pred HHhHHHHHHHHHh------------CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 434 SFTFATYIDGLCK------------NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 434 ~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
..+...|.+.|.. .+..++|+++|.++++.. |-|...-|.++-+++..|++.+|..+|.+..+....
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 7777777776543 245788999999999876 778889999999999999999999999999986443
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSK 580 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 580 (603)
+..+|-.++++|..+|+|..|+++|+...+.-. ..+..+...|++++.+.|++.+|.+.+..+....+. ++.....
T Consensus 679 -~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~--~~~v~FN 755 (1018)
T KOG2002|consen 679 -FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS--NTSVKFN 755 (1018)
T ss_pred -CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc--cchHHhH
Confidence 567899999999999999999999999887633 346788999999999999999999999999987765 5444444
Q ss_pred HHHHH
Q 037409 581 VVDLL 585 (603)
Q Consensus 581 l~~~~ 585 (603)
++-.+
T Consensus 756 ~a~v~ 760 (1018)
T KOG2002|consen 756 LALVL 760 (1018)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-22 Score=203.31 Aligned_cols=256 Identities=14% Similarity=0.074 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 037409 308 GKMDKVNRLLELMIQRG-VNP-DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVC 385 (603)
Q Consensus 308 ~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 385 (603)
+++++|...|+...+.+ ..| ....+..+...+...|++++|+..+++.++.. +.....|..+...+...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 56667777777666543 112 33445566666666777777777777766652 1223455566666666777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037409 386 LYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC 465 (603)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 465 (603)
.|+++++... .+...|..+...+...|++++|+..|++.....+. +...+..+...+.+.|++++|+..+++..+..
T Consensus 387 ~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 7776665532 24556666666667777777777777766655322 44555556666666777777777777666543
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHh------HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVV------TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
+.+...++.+..++...|++++|...|++..+..+..+.. .++..+..+...|++++|+++++++++.+ +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 4456666667777777777777777777766653321111 11111122233567777777777766653 3344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 540 VTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
..+..++..+.+.|++++|++.++++.+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666677777777777777777776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-20 Score=193.74 Aligned_cols=432 Identities=13% Similarity=0.060 Sum_probs=308.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (603)
.+...+..+.+.|++++|+..|++++.. .|++..+..+..+|...|++++|+..+..+++..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4567788889999999999999998876 467788888889999999999999999999887543 6678888899999
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhH
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK 242 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (603)
..|++++|+..|......+ ..+......++..... ..+........+. .+++...+..+.. +......+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILET----KPENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhc----CCCCCCCHHHHHH-HHHHccCCc
Confidence 9999999998887765542 1121211222221111 2333334444443 2233333333333 222222222
Q ss_pred HHHHHHHHhhCCCCCC-hhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 243 AKELLLQMKDRNINPN-VITYNSLICGF---CCVDDWKEAKCLFIEMMDNG-V-QPDVVTFNAMINYNCKDGKMDKVNRL 316 (603)
Q Consensus 243 a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (603)
...-+....+. .+. ...+..+...+ ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22222221111 111 11111111111 23478999999999998764 2 23455678888888999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037409 317 LELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIR 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 396 (603)
+++.++..+. ....|..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|+..|++.+...+
T Consensus 354 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 9999877432 45678888888999999999999999998874 34567888899999999999999999999988643
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChH------
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE------ 470 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------ 470 (603)
.+...+..+...+.+.|++++|+..+++.....+ .+...+..+...+...|++++|...|++........+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 3567778888899999999999999999887543 357788889999999999999999999988754221111
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
.++..+..+...|++++|..++++..+.++. +...+..++..+...|++++|+++|+++.+..
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1222223344579999999999999887655 56678999999999999999999999998864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-22 Score=193.18 Aligned_cols=305 Identities=15% Similarity=0.122 Sum_probs=181.2
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD---LFVLNLLINCL 126 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~ 126 (603)
|..+......|++++|+..|.+++..+|. +..++..++..+.+.|++++|..+++.+...+..++ ...+..++..+
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 44455455567777777777777776553 556677777777777777777777777765431111 13455566666
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCCh
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPN----VVTFNTLINGLCRTRNT 202 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 202 (603)
...|+++.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++++.+.+..+. ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 66777777777777666542 23455666666666677777777777776665432211 11234455566666666
Q ss_pred HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 203 LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 282 (603)
++|...|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...+
T Consensus 197 ~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 197 DAARALLKKALAAD----PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred HHHHHHHHHHHhHC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66766666666542 33445555666666666666666666666665432222344566666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 037409 283 IEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL---VGRISRARELFVSMVSKG 359 (603)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 359 (603)
+++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.+
T Consensus 273 ~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 666654 244444455666666666666666666666554 3455555555554443 335666666666666554
Q ss_pred CCCCc
Q 037409 360 CRHDV 364 (603)
Q Consensus 360 ~~~~~ 364 (603)
+.+++
T Consensus 349 ~~~~p 353 (389)
T PRK11788 349 LKRKP 353 (389)
T ss_pred HhCCC
Confidence 44444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-20 Score=190.68 Aligned_cols=415 Identities=11% Similarity=-0.029 Sum_probs=232.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH
Q 037409 113 FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTL 192 (603)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 192 (603)
+.++......+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455556666666667777777777776666532 2344456666667777777777777777766542 3344556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 193 INGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
+..+...|++++|+..++++.+. .|.+.. +..+...+...|+.++|+..++++.+... .+...+..+...+...
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 66666777777777777777665 244445 66666666677777777777777666522 2444455556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-
Q 037409 273 DDWKEAKCLFIEMMDNGVQPDVV------TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRI- 345 (603)
Q Consensus 273 ~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 345 (603)
+..++|+..++.... .|+.. ....++......+ ....+++
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~ 210 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYA 210 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHH
Confidence 666666666655442 12200 0000111110000 0111112
Q ss_pred --HHHHHHHHHHHHc-CCCCCcc-hHH----HHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHH
Q 037409 346 --SRARELFVSMVSK-GCRHDVY-SYN----ILINANCKDQKVEDAVCLYREMLSERIR-PSVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 346 --~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 416 (603)
++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+++...+.+ |+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 4455555555543 1111111 110 0022334456666666666666554321 221 1122344566666666
Q ss_pred HHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------CCC---hHHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVP---DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC-----------ELR---IETYNCLINGL 479 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 479 (603)
+|+..|+++....... .......+..++...|++++|.++++.+..... .|+ ...+..++..+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 6666666655432111 122333444455666666666666666654321 112 22445566667
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
...|++++|+.+++++....|. +...+..++..+...|++++|++.++++++.. |.+...+...+..+...|++++|.
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 7777777777777777776555 56677777777777777777777777777754 444556666666777777777777
Q ss_pred HHHHHHHHCCCC
Q 037409 560 VLLHKMAAEKLV 571 (603)
Q Consensus 560 ~~~~~~~~~~~~ 571 (603)
..++++++..+.
T Consensus 448 ~~~~~ll~~~Pd 459 (765)
T PRK10049 448 VLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhCCC
Confidence 777777765544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-19 Score=182.93 Aligned_cols=465 Identities=13% Similarity=0.053 Sum_probs=284.4
Q ss_pred HHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037409 48 AKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLC 127 (603)
Q Consensus 48 ~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (603)
..|.++.+....|+++.|+..|++++..+|......+ .++..+...|+.++|+..++++... .+........++..+.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 3577777888899999999999999998876333344 7888888999999999999999821 1333444444567889
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALK 207 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (603)
..|++++|+++++++.+..+. +..++..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999998766 5777788889999999999999999999876 6666666555555555677767999
Q ss_pred HHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 208 LFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
.++++.+. .|.+...+..+..++.+.|-...|.++..+-... +.+....+ | . .+.|.+..+.
T Consensus 191 ~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l-~-------~~~~a~~vr~--- 252 (822)
T PRK14574 191 ASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L-E-------RDAAAEQVRM--- 252 (822)
T ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H-H-------HHHHHHHHhh---
Confidence 99999997 3567788888999999999999999887765432 11111111 0 0 0011111100
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037409 288 NGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQR-GVNPDT-V----TYNSLMDGFCLVGRISRARELFVSMVSKGCR 361 (603)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (603)
+..++..- . . +---.+.|..-++.+... +..|.. . ...-.+-++...+++.++++.|+.+...+.+
T Consensus 253 -a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 253 -AVLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred -cccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 00000000 0 0 000112222222332221 000110 0 1112222344444555555555555444433
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------
Q 037409 362 HDVYSYNILINANCKDQKVEDAVCLYREMLSER-----IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLND------- 429 (603)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 429 (603)
....+-..+.++|...+++++|..+|+.+.... .+++......|.-++...+++++|..+++.+.+..
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 333344444455555555555555555543321 11122223445555555555555555555554421
Q ss_pred ------CCCCH-HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC
Q 037409 430 ------VVPDS-FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP 502 (603)
Q Consensus 430 ------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 502 (603)
+.||- .....++..+...|++.+|++.++++.... |-|......+...+...|.+.+|+..++.+....+.
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~- 482 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR- 482 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-
Confidence 12222 223344556677788888888888776655 667777778888888888888888888766665444
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+..+....+.++...|++++|..+.+.+.+.. |+......|-+
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~~~l~r 525 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRS--PEDIPSQELDR 525 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhHHHHHH
Confidence 56666677777777788888888877777753 44444444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-20 Score=193.54 Aligned_cols=421 Identities=12% Similarity=0.012 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGL 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (603)
....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..+++++++..+. +...+..++..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 333445667788999999999999998643 566777999999999999999999999999987543 577788899999
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+. .|.+...+..+...+...|..+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChH
Confidence 99999999999999998873 44556 888899999999999999999999997 3556777777888888999999
Q ss_pred HHHHHHHHHhhCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HHHHHHHHHH
Q 037409 242 KAKELLLQMKDRNINPNV------ITYNSLICGFC-----CVDDW---KEAKCLFIEMMDN-GVQPDVV-TFNAMINYNC 305 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~~l~~~~~ 305 (603)
+|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+...
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a----- 239 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA----- 239 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH-----
Confidence 99999987664 2221 01111111111 11112 3444444444432 1111111 00000
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHH
Q 037409 306 KDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
....+..+...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+
T Consensus 240 --------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 240 --------------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred --------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHH
Confidence 000011223334455555555554443211 11 11111334444555555555
Q ss_pred HHHHHHHhCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----------CCC---HHhHHHHHHHHHhC
Q 037409 385 CLYREMLSERIRP---SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV-----------VPD---SFTFATYIDGLCKN 447 (603)
Q Consensus 385 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~ 447 (603)
..|+++....... .......+..++...|++++|..+++.+....+ .|+ ...+..+...+...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 5555544322110 012233334444555555555555555543311 223 22445667778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|++.++++.... |.+...+..++..+...|++++|+..++++.+..|. +...+...+..+...|++++|+.++
T Consensus 373 g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 373 NDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999988765 667889999999999999999999999999987655 5667777888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q 037409 528 LDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 528 ~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+++++. .|+......+-+.+
T Consensus 451 ~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 451 DDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHh--CCCCHHHHHHHHHH
Confidence 999986 36555444444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-20 Score=189.22 Aligned_cols=361 Identities=12% Similarity=0.013 Sum_probs=251.5
Q ss_pred HHhcCCHhHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcC
Q 037409 161 LCAEGRIMEAARLFKKLNVFA--CDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDG 238 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (603)
+.+..+++.-.-+|....+.. -..+......++..+.+.|++++|..+++..+.. .+.+...+..++.+....|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASS 90 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcC
Confidence 345666666666666554321 0112223445566777788888888888888876 3455666666777777788
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 239 FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLE 318 (603)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (603)
++++|...++++.... +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8888888888887763 3356677777888888888888888888887753 3456677777888888888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037409 319 LMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPS 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 398 (603)
.+....+. +...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|+..++++..... .+
T Consensus 169 ~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~ 245 (656)
T PRK15174 169 TQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DG 245 (656)
T ss_pred HHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence 77665433 22233333 23677788888888888877664333334444556677788888888888888777643 35
Q ss_pred HhhHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHH
Q 037409 399 VITYNTLLSGLFQVGNLGD----ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNC 474 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (603)
...+..+...+...|++++ |...+++.....+. +...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6667777778888888775 67778877765433 56677777778888888888888888877765 556667777
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+..++.+.|++++|...++++.+.++. +...+..++.++...|++++|+..|+++++.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788888888888888888888775443 2333444566777888888888888888775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-20 Score=191.26 Aligned_cols=368 Identities=10% Similarity=-0.012 Sum_probs=291.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD 273 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (603)
..+.+..+++.-.-+|....+.... ...+..-...++..+.+.|++++|..+++........ +...+..++.+....|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 13 TTLLKQEDWEGLCLYFSQHPEKVRD-SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASS 90 (656)
T ss_pred hhhhhhhchhhHhHHhhcccHhhhh-hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcC
Confidence 4456667777766666666654211 1122334455677788999999999999999887433 5566667777788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
++++|...++++.... +.+...+..+...+...|++++|...++++.+..+. +...+..++..+...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999874 456778888889999999999999999999987433 56778888999999999999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037409 354 SMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD 433 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (603)
.+...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|+..++++....+. +
T Consensus 169 ~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~ 245 (656)
T PRK15174 169 TQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-G 245 (656)
T ss_pred HHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 88776422 23333333 347889999999999999887654445555566677888999999999999999876543 6
Q ss_pred HHhHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLE----AVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCST 509 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 509 (603)
...+..+...+...|++++ |...++++.+.. |.+...+..++..+.+.|++++|...+++..+..+. +...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 7777888999999999986 899999998865 667889999999999999999999999999997666 6777888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
++.++...|++++|+..++++.+.+ +.+...+..++.++...|++++|...++++.+..+.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999864 233344555678899999999999999999987655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-21 Score=187.49 Aligned_cols=301 Identities=14% Similarity=0.079 Sum_probs=168.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---HhhHHHHHHHHH
Q 037409 86 ILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPN---TVTFNFLINGLC 162 (603)
Q Consensus 86 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 162 (603)
..+..+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+......++ ...+..++..|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445566777777888888777764 44555677777777777777777777777766432211 234566667777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC---hhhHHHHHHHHHhcCC
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD---VVTYNSIIDGLCKDGF 239 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 239 (603)
+.|++++|..+|+++.+.. +++..++..++..+...|++++|++.++.+.+.... ++. ...+..++..+.+.|+
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--SLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHhCCC
Confidence 7777777777777776542 345566667777777777777777777776654310 000 1123345555556666
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLEL 319 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (603)
+++|...|+++.+.. +.+...+..++..+.+.|++++|.++++++...+......++..++.+|.+.|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665542 2234455555556666666666666666655442111123445555555555555555555555
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCC
Q 037409 320 MIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK---DQKVEDAVCLYREMLSERI 395 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 395 (603)
+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 55442 23333344555555555555555555555444 3444444444444332 2345555555555554433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-18 Score=177.66 Aligned_cols=458 Identities=14% Similarity=0.026 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
+.+...-+....++|+++.|+..|+++++.. |.+......++..+...|+.++|+..+++.... ..........++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 4444444555667777777777777777664 222222226666677777777777777777621 11123333333556
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++.
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-----p~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD-----PTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-----cchHHHHHHHHHHHhcchH
Confidence 667777777777777777653 3344555666667777777777777777776642 3444443333333334555
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 241 DKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELM 320 (603)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (603)
.+|++.++++.+.. +.+...+..+.....+.|-...|.++.++- |+..+-..... =+.+.+.+..+..
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a 253 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhc
Confidence 45777777777653 225555666666666666666666555442 22111110000 0011111111111
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-cchH----HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037409 321 IQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK-GCRHD-VYSY----NILINANCKDQKVEDAVCLYREMLSER 394 (603)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~ 394 (603)
..++.. - -. +.--.+.|+.-++.+... +..|. ...| .-.+-++...+++.++++.|+.+...+
T Consensus 254 ----~~~~~~-~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 254 ----VLPTRS-E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred ----cccccc-c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 111000 0 00 001235566666666653 11122 1222 234556788999999999999999887
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Q 037409 395 IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV-----VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---- 465 (603)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---- 465 (603)
.+....+-..+.++|...+++++|+.+++.+..... .++......|.-++...+++++|..+++.+.+...
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 665666888999999999999999999999865431 22333356788899999999999999999987321
Q ss_pred -------CCC---hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 466 -------ELR---IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 466 -------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
.|+ ...+..++..+...|++.+|++.++++....|. |...+..+...+...|.+.+|++.++.+....
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~- 480 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA- 480 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-
Confidence 122 234455677788999999999999999998777 99999999999999999999999998888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.+..+....+.++...|++++|..+.+.+.+..+.
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 556777888999999999999999999999987765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-17 Score=161.43 Aligned_cols=545 Identities=12% Similarity=0.062 Sum_probs=362.7
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMG 130 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 130 (603)
-.+......|++++|..++.+++..+|. +...|..|...|-+.|+.+++...+-.+.... +.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 3444455569999999999999999876 78899999999999999999999888887765 678889999999999999
Q ss_pred CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHhcCChHHHH
Q 037409 131 ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTF----NTLINGLCRTRNTLVAL 206 (603)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~ 206 (603)
++++|.-.|.++++..+. +....---+..|-+.|+...|...|.++.....+.|..-. -..+..+...++.+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999998654 4444444567788999999999999999886321122222 23456677788889999
Q ss_pred HHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH------------------------
Q 037409 207 KLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITY------------------------ 262 (603)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------------------ 262 (603)
+.++....... ...+...++.++..+.+...++.+......+..+...+|..-|
T Consensus 301 ~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 301 KALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99999987432 3455667889999999999999999888777663222222111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 263 --NSLICGFCCVDDWKEAKCLFIEMMDNG--VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDG 338 (603)
Q Consensus 263 --~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (603)
..+.-++...+..+....+...+.+.. +.-+...|.-+..++.+.|++.+|..+|..+......-+...|..+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 122233334444444444444444444 3334567788888899999999999999988877655567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHH
Q 037409 339 FCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE--------RIRPSVITYNTLLSGLF 410 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ 410 (603)
|...|..+.|.+.|..++... +.+...-..|...+.+.|+.++|.+.+..+... +..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999888763 234455566777788899999999888875432 12233333333444555
Q ss_pred hcCCHHHHHHHHHHHhhCC-----C---------------------------------------------CC--------
Q 037409 411 QVGNLGDALKLIDKMQLND-----V---------------------------------------------VP-------- 432 (603)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~-----~---------------------------------------------~~-------- 432 (603)
+.|+.++-+.....|.... + .+
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 6666554333222221100 0 00
Q ss_pred -----C--HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCh---HHHHHHHHHHHhCCChhHHHHHHHHHhhC-C
Q 037409 433 -----D--SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRI---ETYNCLINGLCKMGRLKTACKLFHRLQHK-G 499 (603)
Q Consensus 433 -----~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 499 (603)
+ ...+..++..+++.+++++|+.+...+..... .++. ..-...+.+....+++..|...++.+... +
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0 01234455677788888888888877765321 2221 23344555667788888888888877764 1
Q ss_pred C--CC-CHhHHHHHHH-----------------------------------HHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 037409 500 P--IP-DVVTCSTMIH-----------------------------------WLCKEGQMDKANDLLLDMEAKNCVPSEVT 541 (603)
Q Consensus 500 ~--~p-~~~~~~~l~~-----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 541 (603)
. .| -...|+.... -+...+.+.-|+..+-++...+ |.++.+
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~-pd~Pl~ 776 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN-PDSPLI 776 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC-CCCcHH
Confidence 0 11 1223332111 1223456667777766666654 223433
Q ss_pred HHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 542 FCTLLRGFVQ----------NNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 542 ~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
-..++.++.. .-..-++..++++..+........+++..++++|...|-..-|..+|++.|
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL 847 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL 847 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3333333321 112355666776666533221256888999999999999999999999987
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-16 Score=148.44 Aligned_cols=508 Identities=10% Similarity=0.007 Sum_probs=358.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 037409 65 AVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILR 144 (603)
Q Consensus 65 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 144 (603)
-.++++++++..|. ++..|...+ ...+.++|+.++.++++.- +.+.. +..+|.+...|+.|..++....+
T Consensus 365 K~RVlRKALe~iP~-sv~LWKaAV----elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEHIPR-SVRLWKAAV----ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHhCCc-hHHHHHHHH----hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555443 444444322 3344555666666666542 22322 23345555666777777777666
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH----HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCcc
Q 037409 145 SCFTPNTVTFNFLINGLCAEGRIMEAARLFKK----LNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAIC 220 (603)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 220 (603)
. ++.+..+|.+-...--.+|+.+...+++++ +...|+.-+...|..=...+-..|..-.+..+....+..+-. .
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE-e 512 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE-E 512 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc-c
Confidence 5 333666666666655667777777666655 334566666677777677777777777777777766655411 1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 221 KPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAM 300 (603)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 300 (603)
..-..+|..-...|.+.+.++-|..+|....+. ++.+...|......--..|..++-..+|++.... ++.....|...
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ 590 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMY 590 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHH
Confidence 223456777778888888888888888887765 3446677777777767778888888888888876 34455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
...+-..|++..|..++.++.+..+. +...|..-+..-....+++.|..+|.+.... .++..+|..-+..---.++.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 77778888999998888888877543 6677777777778888889999888888775 45677777666666677888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 460 (603)
++|++++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. ++.....|..+...--+.|.+-+|..++++.
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 8999888888775 2223456777778888888888888888776553 2224445666666666778888899888888
Q ss_pred HHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 461 RNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
.-.+ |.+...|...|++-.+.|+.+.|..+..++++.-+. +...|..-|+...+.++-......+++. .-|++
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence 7655 668888888888888999999998888888886444 6677777777777766655554444433 46777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
++..++..+....++++|.++|++.++.+++ ..++|.-+...+.+.|.-++-.+++++
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d--~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPD--NGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--cchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888999999999999999999987765 677888888888999987777777765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-18 Score=155.87 Aligned_cols=490 Identities=14% Similarity=0.067 Sum_probs=337.8
Q ss_pred hhhhhccCCCHHHHHHHHHHHH-----------hCCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 037409 52 NDRHKSGNITSNEAVYFFDCMI-----------KMKP------SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFP 114 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~-----------~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 114 (603)
..+++..+|++.+|+.--..+- +.+. .-.-.+...+.+.|..+....+|+..|+-.++....|
T Consensus 155 es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~ 234 (840)
T KOG2003|consen 155 ESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFP 234 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccC
Confidence 3446667888888776544331 1110 0112334566777888888999999999999887777
Q ss_pred CHHHHH-HHHHHHHhcCCcchHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHH
Q 037409 115 DLFVLN-LLINCLCKMGITSGAFVVLGRILRSCFTPNT----VTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTF 189 (603)
Q Consensus 115 ~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 189 (603)
+...+. .+.+.+.+..++..|++.++..+..-+..+. ...+.+...+.+.|++++|+..|+...+. .|+..+-
T Consensus 235 nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~ 312 (840)
T KOG2003|consen 235 NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAA 312 (840)
T ss_pred CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhh
Confidence 765443 3567888999999999999888776443333 34555566788999999999999998876 7888887
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCc---------cCCChhhHHHHH-----HHHHhcCC--hhHHHHHHHHHhhC
Q 037409 190 NTLINGLCRTRNTLVALKLFEEMVNEFGAI---------CKPDVVTYNSII-----DGLCKDGF--VDKAKELLLQMKDR 253 (603)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~l~-----~~~~~~g~--~~~a~~~~~~~~~~ 253 (603)
..|+-++...|+.++..+.|.+++...+.. ..|+....+..+ .-+.+.+. .++++-.--.+..-
T Consensus 313 ~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiap 392 (840)
T KOG2003|consen 313 LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAP 392 (840)
T ss_pred hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 777777778899999999999998754210 112222222222 22222211 12222221222221
Q ss_pred CCCCChh-------------hH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCH
Q 037409 254 NINPNVI-------------TY--------NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNC-K-DGKM 310 (603)
Q Consensus 254 ~~~~~~~-------------~~--------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~ 310 (603)
-+.|+.. .+ ..-..-|.++|+++.|+++++-+.+..-+.....-+.|-..+. + -.++
T Consensus 393 vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~ 472 (840)
T KOG2003|consen 393 VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDF 472 (840)
T ss_pred ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccch
Confidence 1222211 00 0112346788999999999988876543322223333332222 2 3467
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHH---HHHHhcCChHHHHHHH
Q 037409 311 DKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILI---NANCKDQKVEDAVCLY 387 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~ 387 (603)
..|.++-+..+... ..++.....-.+.....|++++|.+.|.+.+.. |.....+|. -.+-..|++++|++.|
T Consensus 473 ~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 473 ADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCF 547 (840)
T ss_pred hHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHH
Confidence 77877777766442 223333333334445679999999999999876 444333333 3467789999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 037409 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL 467 (603)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 467 (603)
-++... ...+......+...|....+..+|++++-+.... ++.|+..+..|...|-+.|+-..|.+.+-+--+ .+|.
T Consensus 548 ~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~ 624 (840)
T KOG2003|consen 548 LKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPC 624 (840)
T ss_pred HHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCc
Confidence 876543 2236777778888899999999999999887765 455888999999999999999999888766554 3488
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL-CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
+.++...|...|....-+++++.+|++..- ++|+..-|..++..| .+.|++++|.+++++.-.+ ++.|..++..|+
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 999999999999999999999999998876 678999999887765 5689999999999998876 588999999999
Q ss_pred HHHHhcCC
Q 037409 547 RGFVQNNK 554 (603)
Q Consensus 547 ~~~~~~g~ 554 (603)
+.+...|.
T Consensus 702 ri~~dlgl 709 (840)
T KOG2003|consen 702 RIAGDLGL 709 (840)
T ss_pred HHhccccc
Confidence 99887774
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-16 Score=138.14 Aligned_cols=470 Identities=13% Similarity=0.112 Sum_probs=312.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+...|...+.-=..++++..|.++|++++..+ ..+...|...+.+-.+......|+.++++++..-+..|. .|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 45566666666666777888888888887655 455666767777777778888888888887776443332 3444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
+--..|++..|.++|++.... .|+..+|.+.++.-.+-++.+.|..+|+..+- +.|++.+|.-....-.+.|.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccHHHHHHHHHHHHhcCc
Confidence 445567888888888887765 78888888888888888888888888888775 45778788777777778888
Q ss_pred hhHHHHHHHHHhhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 037409 240 VDKAKELLLQMKDR-NI-NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD--VVTFNAMINYNCKDGKMDKVNR 315 (603)
Q Consensus 240 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 315 (603)
...+..+|+...+. |- ..+...+.++...-.++..++.|.-+|+-.++. ++.+ ...|..+...--+-|+......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 88888888776653 10 112234444444445667777787777777765 2222 3344444443334454333222
Q ss_pred --------HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc--chHHHHHHH--------HHhc
Q 037409 316 --------LLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDV--YSYNILINA--------NCKD 377 (603)
Q Consensus 316 --------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~ 377 (603)
-++.+++.+ +.|-.+|-..+..-...|+.+...++|+.++..- +|-. ..|...|.. -...
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234444443 3366677777777777888888888888887652 3311 122222211 1236
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSG----LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
.+.+.+.++|+..++. ++....||..+--. -.++.+...|.+++...+ |..|...+|...|..-.+.++++..
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 7788888888887774 44445555444333 346778888888887765 4567777888888888888888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG-PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
..++++.+..+ |.+..+|......-...|+.+.|..+|+-+++.. .......|...|..-...|.++.|..+++++++
T Consensus 457 RkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 457 RKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 88888888776 6677888888888888888888888888887642 122344567777777788888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 037409 533 KNCVPSEVTFCTLLRGFV-----QNN-----------KKSKVVVLLHKMAA 567 (603)
Q Consensus 533 ~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 567 (603)
.. +...+|...+.--. +.| ....|..+|+++..
T Consensus 536 rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 536 RT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 63 44446655544332 333 45677888887753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-15 Score=140.98 Aligned_cols=496 Identities=10% Similarity=0.043 Sum_probs=404.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVL 139 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 139 (603)
.+.++|+.++.++.+.-|. +...|.+ |.+..-|+.|..++..+.+. ++.++..|......--..|+.+....++
T Consensus 390 E~~~darilL~rAveccp~-s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQ-SMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred cChHHHHHHHHHHHHhccc-hHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 3456799999999888665 6776655 45566789999999998765 5889999998888888999999988888
Q ss_pred HHHH----HCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 140 GRIL----RSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDP--NVVTFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 140 ~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
.+.+ ..|+..+...|..=...+-+.|..-.+..+.......|+.. ...+|..-...|.+.+.++-|..+|...+
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 7644 46788888899888889999999999999999888887653 34689999999999999999999999999
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+. .+.+...|...+..--..|..++-..+|++.... ++-....|......+...|+...|..++....+.. +.+
T Consensus 544 qv----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 544 QV----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred hh----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 87 4667788888888888899999999999999886 44466677777788889999999999999999875 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINA 373 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (603)
...|..-+..-..+.+++.|..+|.+.... .|+..+|..-+..-...+..++|++++++.++. ++.-...|-.+.+.
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 789999999999999999999999998765 567788877777777889999999999999887 22233567777788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 374 NCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 374 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
+-+.++.+.|...|..-... .+..+-.|..+...--+.|++-.|..+++.....++. +...|...++.-.+.|+.+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence 88899999999888765544 3345667888888888889999999999999877655 778899999999999999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
..+..+.+.. ++.+...|..-|....+.++-..+...+++.. -|+...-.+...+....+++.|.+.|.++++.
T Consensus 773 ~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 773 ELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999888763 36677888888887777776555554444433 37778888889999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 534 NCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 534 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
+ +.+..+|..+...+.+.|.-++-.+++++.....+. ....|..+
T Consensus 847 d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~--hG~~W~av 891 (913)
T KOG0495|consen 847 D-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--HGELWQAV 891 (913)
T ss_pred C-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCcHHHHH
Confidence 6 566788999999999999999999999998875554 33444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-15 Score=148.47 Aligned_cols=370 Identities=13% Similarity=0.062 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGL 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (603)
...-..+..+...|+.++|..++.+.++.. +.....|..|..+|-..|+.+++...+-.+....+. |...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 334444555666799999999999999987 778899999999999999999999888777766554 668999999999
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhH----HHHHHHHHhc
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTY----NSIIDGLCKD 237 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~ 237 (603)
.+.|++++|.-.|.+..+.. +++....-.-...|-+.|+...|.+.|.++.... .+.|..-+ -.++..+...
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875 5666666667788999999999999999999874 12222222 2345667777
Q ss_pred CChhHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------------------------
Q 037409 238 GFVDKAKELLLQMKDR-NINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGV-------------------------- 290 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------------- 290 (603)
++-+.|.+.++..... +-..+...++.++..+.+...++.+......+.....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999988887663 2334567788999999999999999988877766222
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 291 -QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 291 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.++... -.+.-++......+...-+........ +.-+...|.-+..++...|.+..|+.+|..+.......+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 222222 122223334444444444455555555 3335567888999999999999999999999988555567789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--------CCCCCCHHhHHH
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQL--------NDVVPDSFTFAT 439 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ 439 (603)
-.+..+|...|.++.|.+.|+..+...+ .+...-..|...+.+.|++++|.+.+..+.. ....|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 9999999999999999999999988633 2556667788889999999999999998642 223444444455
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q 037409 440 YIDGLCKNGFVLEAVQVFQA 459 (603)
Q Consensus 440 l~~~~~~~g~~~~a~~~~~~ 459 (603)
....+...|+.++-..+...
T Consensus 532 r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 55666677776665444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-15 Score=132.35 Aligned_cols=480 Identities=10% Similarity=0.058 Sum_probs=358.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 037409 103 LFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC 182 (603)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 182 (603)
-|+.-++.+ ..+...|....+--..++++..|+.+|++++.... .+...|...+.+-.++..+..|..++++....-
T Consensus 61 efEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l- 137 (677)
T KOG1915|consen 61 EFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL- 137 (677)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-
Confidence 344333332 44556666666677778899999999999998763 478899999999999999999999999987651
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH
Q 037409 183 DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITY 262 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 262 (603)
+.-...|.-.+-.--..|+...|.++|+...+ ..|+..+|++.|..-.+-..++.|..++++.+-. .|++.+|
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~w 210 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNW 210 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHH
Confidence 33334566566556668999999999999998 5799999999999999999999999999998864 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHH
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDN-G-VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPD-TVTYNSLMDGF 339 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 339 (603)
......--+.|....|..+|+...+. | -.-+...+.+....-.++..++.|.-+|+-.++.-+... ...|..+...-
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99998888999999999999988764 1 011233455555555667889999999999987733322 23454554444
Q ss_pred HhcCCHHHHHHH--------HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHH-
Q 037409 340 CLVGRISRAREL--------FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSV--ITYNTLLSG- 408 (603)
Q Consensus 340 ~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~- 408 (603)
-+-|+....... ++..++.+ +.|-.+|-..+..-...|+.+...++|++++.. ++|-. ..|.-.|-.
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 455664443332 33444443 456777888888888899999999999999876 44422 222222221
Q ss_pred -------HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 409 -------LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI----DGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 409 -------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
-....+.+.+.++++..++. ++-...||.-+- .--.++.++..|.+++...+ |..|...++-..|.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 13468899999999988873 333445554443 33457889999999998877 66888999999999
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 556 (603)
.-.+.++++.+..++++.++.+|. |..+|...+..-...|+.+.|..+|+-+++... ......|...+..-...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 999999999999999999998877 888999888888899999999999999997531 123445677777778899999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-----cCC-----------cHHHHHHHHHhh
Q 037409 557 KVVVLLHKMAAEKLVVSDLSLSSKVVDLLS-----KDK-----------KYRECLNQFRHL 601 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~eA~~~~~~~ 601 (603)
+|..+|+++++... ...++...+..-. +.| ++..|+.+|++.
T Consensus 525 kaR~LYerlL~rt~---h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 525 KARALYERLLDRTQ---HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred HHHHHHHHHHHhcc---cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 99999999998653 4446666665444 445 566777777754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-15 Score=130.67 Aligned_cols=341 Identities=16% Similarity=0.188 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCcchH-HHHHHHHHHCCCCCCHhhHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC--LCKMGITSGA-FVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l 157 (603)
+.+-+.++. +..+|...++--+|++|...|++.++..-..+++. |....++.-+ .+.|-.|.+.|.. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 445566655 44588899999999999999888787777776653 3333333322 2333334443322 33333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.|...+ ++-+.. +.+..++..+|.++|+--..+.|.+++++..... .+.+..+||.+|.+-.-.
T Consensus 191 -----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK---GKVYREAFNGLIGASSYS 255 (625)
T ss_pred -----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---heeeHHhhhhhhhHHHhh
Confidence 3444433 333332 5677899999999999999999999999988765 567889999998764432
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKE----AKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDK- 312 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 312 (603)
...++..+|......||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+
T Consensus 256 ----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 ----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred ----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 227889999999999999999999999999998765 56788899999999999999999999998887644
Q ss_pred HHHHHHHHHH----CCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---cchHHHHHHHHHhc
Q 037409 313 VNRLLELMIQ----RGVN----PDTVTYNSLMDGFCLVGRISRARELFVSMVSKG----CRHD---VYSYNILINANCKD 377 (603)
Q Consensus 313 a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 377 (603)
+..++.++.. ...+ -|...|...+..|....+.+.|.++..-..... +.++ ..-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 2222 244567778888889999999988876654431 1222 12356677778888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
...+.-...|+.|.-.-.-|+..+...++++....+.++-.-++|..++..|..-+......++..++
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 88999999999998877778888888899999889999999999988887764444433333333333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-14 Score=127.64 Aligned_cols=430 Identities=16% Similarity=0.173 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCC-HhHHHHHHHHHHhcCCCCcHHHHHHH
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA--EGR-IMEAARLFKKLNVFACDPNVVTFNTL 192 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 192 (603)
+.+-+.+++ ....|.+.++.-+|+.|...|.+.+..+...|.+..+- ..+ +-.-++.|-.|...| +.+..+|.
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK-- 191 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc--
Confidence 345555655 45678899999999999999888888777776654332 222 223345566666655 44555553
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 193 INGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
.|+..+ ++-+. .|....++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 192 ------~G~vAd---L~~E~-------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 192 ------SGAVAD---LLFET-------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred ------cccHHH---HHHhh-------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 344333 22222 45677899999999999999999999999999888888999999999765433
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH-
Q 037409 273 DDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDK----VNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISR- 347 (603)
Q Consensus 273 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 347 (603)
. ..+++.+|....+.||..|+|+++.+..+-|+++. |.+++.+|++.|+.|...+|..++..+++.++..+
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 2 27889999999999999999999999999998765 55788899999999999999999998888777643
Q ss_pred HHHHHHHHHHc----CCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC---HhhHHHHHHHHHhc
Q 037409 348 ARELFVSMVSK----GCRH----DVYSYNILINANCKDQKVEDAVCLYREMLSE----RIRPS---VITYNTLLSGLFQV 412 (603)
Q Consensus 348 a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~ 412 (603)
+..++.++... .++| |...|...+..|.+..+.+-|.++-.-+... .+.|+ ..-|..+....++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 45555555432 2222 3455666777888888888888876655432 12222 23356677778888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-Ch--h---
Q 037409 413 GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-RL--K--- 486 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--~--- 486 (603)
...+.....|+.|.-.-.-|+..+...++++....+.++-.-+++..+...|...+......+...+++.. +. .
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 88999999999998877788999999999999999999999999999888776666666666666665544 21 0
Q ss_pred -------H-HHHHH-------HHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 037409 487 -------T-ACKLF-------HRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN----CVPSEVTFCTLLR 547 (603)
Q Consensus 487 -------~-A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 547 (603)
+ |..++ .++.+. .-.....+.++..+.+.|+.++|.+++.-+.+.+ ..|......-+..
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 0 11111 122222 2345567788888899999999999999987653 2344445567777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.-.+..+...|...++-|...+..
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCch
Confidence 778889999999999999876653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-15 Score=134.09 Aligned_cols=463 Identities=13% Similarity=0.089 Sum_probs=312.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCc------HHHHHH
Q 037409 119 LNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTF-NFLINGLCAEGRIMEAARLFKKLNVFACDPN------VVTFNT 191 (603)
Q Consensus 119 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 191 (603)
+..+.+-|.....+.+|+..++-+++...-|+.-.. ..+...+.+...+.+|++.++-.... .|+ ....+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~n 281 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhh
Confidence 344555666677778888888888887666665432 23556778888999999998876654 232 234566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--------HH
Q 037409 192 LINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT--------YN 263 (603)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~ 263 (603)
+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|...-..||..- -.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~-----~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE-----APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh-----CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 667788999999999999999986 46766655666677778999999999999976532222211 12
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHHhcCCHH
Q 037409 264 SLICGFCCVD-----------DWKEAKCLFIEMMDNGVQPDVVT---F------------------NAMINYNCKDGKMD 311 (603)
Q Consensus 264 ~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~l~~~~~~~~~~~ 311 (603)
.|+.--.+.. +.++++-.-.+++.--+.|+-.. | ..-...+.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222222111 12222222222222112222110 0 01123477899999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHH-HHh-cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 037409 312 KVNRLLELMIQRGVNPDTVTYNSLMDG-FCL-VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYRE 389 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 389 (603)
.|.++++-..+..-+.....-+.|-.. |.+ ..++..|.++-+..+... ..+......-...-...|++++|.+.+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 999999888766433222222322222 222 346777877777766542 11222222222334457999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Q 037409 390 MLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI 469 (603)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 469 (603)
.+..... .....-.+.-.+-..|+.++|++.|-++... ...+...+..+...|....+...|++++.+.... +|.++
T Consensus 516 al~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 9875322 1222222333567889999999999877543 1236677778888999999999999999877653 47899
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG- 548 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 548 (603)
.++..|...|-+.|+-..|....-.--..-+ -|..+...|...|....-+++++.+|+++.- +.|+..-|..++..
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp-~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 9999999999999999999988766555433 3788888899889999999999999999876 57999999776654
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+.+.|++++|..+|+....+-+ .+.+...-|+++....| ..+|.++-
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfp--edldclkflvri~~dlg-l~d~key~ 716 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFP--EDLDCLKFLVRIAGDLG-LKDAKEYA 716 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCc--cchHHHHHHHHHhcccc-chhHHHHH
Confidence 5679999999999999987655 48888888888888777 33444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-14 Score=128.91 Aligned_cols=364 Identities=9% Similarity=-0.009 Sum_probs=242.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HH
Q 037409 222 PDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF--NA 299 (603)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~ 299 (603)
.|...+-.....+.+.|....|.+.|...... .+-.-..|..|... ..+.+.+ ..... +.+.|...+ -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHH----HHHHh-cCcccchHHHHHH
Confidence 34444444555566777888888888777654 22233333333332 2222222 22221 222222222 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCcchHHHHHHHHHhc
Q 037409 300 MINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCR--HDVYSYNILINANCKD 377 (603)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 377 (603)
+..++......+++.+-.+.....|.+.....-+....+.....|++.|+.+|+++.+...- .|..+|+.++..- .
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 34455566677888888888888777766666666666666778888999999888887210 1445555554332 2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
.+.. +..+-+-...--+--+.|...+.+-|+-.++.++|..+|+...+.++. ....|+.+..-|....+...|.+-+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 111111111101124456677778888888899999999988876544 4567778888888888899999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP 537 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (603)
+.+.+.. |-|-..|-.|+.+|.-.+...-|+-.|+++.+..|. |...|.+|+.+|.+.++.++|+..|.++...| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9888766 668888889999999888888999999988887555 78889999999999999999999999888876 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVS-DLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+...+..|+..|-+.++.++|...+++.++. |...| ......-|+.-+.+.+++++|..+..+.+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 6778888899999999999998888887752 22212 23344446677778888888887765543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-15 Score=132.52 Aligned_cols=215 Identities=14% Similarity=0.012 Sum_probs=114.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHH
Q 037409 377 DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQV 456 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 456 (603)
.|+.-.|..-|+..+.....++. .|.-+...|....+.++....|++....++. ++.+|..-.+...-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 45555666666655554333222 2444445556666666666666665554433 444555555555555566666666
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 037409 457 FQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCV 536 (603)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 536 (603)
|++..... |.+...|..+..+..+.+.+++++..|++..++-|. .+..|+.....+..+++++.|.+.|+.+++..
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-- 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-- 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--
Confidence 66655544 445555555555555556666666666666555333 44555666666666666666666666665542
Q ss_pred CC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 537 PS-------EVTF--CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 537 ~~-------~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
|+ ...+ ..++..- -.+++..|..+++++++..++ ....+..++....+.|+.++|+++|++
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk--ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK--CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch--HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 21 1111 1111111 125556666666666654443 445555666666666666666666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-18 Score=154.97 Aligned_cols=261 Identities=17% Similarity=0.155 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKG-CRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+...+...|++++|++++....... .+.+...|..+.......++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666677777777777775544332 2334455555666666677788888888777765433 45556666655 577
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 413 GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC-KCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
+++++|.+++...-+.. +++..+...+..+...++++++..+++.+... ..+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888777664432 35556667777778888888888888876643 2345677778888888888888888888
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+++.++..|. |......+++.+...|+.+++.++++...+.. +.|+..+..++.+|...|+.++|..++++..+.++.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 8888887555 67778888888888888888888888777654 556667778888888888888888888888876654
Q ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 572 VSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 572 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|+.....+++++.+.|+.++|.++.++++
T Consensus 247 --d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 --DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---HHHHHHHHHHHT----------------
T ss_pred --ccccccccccccccccccccccccccccc
Confidence 88888888888888888888888877654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-13 Score=120.84 Aligned_cols=367 Identities=11% Similarity=0.013 Sum_probs=243.3
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh
Q 037409 182 CDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT 261 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 261 (603)
...|...+......+-+.|....|++.|...+.. .|..-.+|..|..... +.+.+ ..... |.+.|...
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~ 227 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELIT---DIEIL----SILVV-GLPSDMHW 227 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhc---hHHHH----HHHHh-cCcccchH
Confidence 3556566666666777788888888888887765 3444555544443322 22222 22211 11112111
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHH
Q 037409 262 Y--NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN--PDTVTYNSLMD 337 (603)
Q Consensus 262 ~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 337 (603)
. -.+..++-.....+++..-.+.....|++.+...-+....+.-...++++|+.+|+++.+..+- .|..+|+.++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1 1233555556677788877777777776655555555555666777888888888888877321 14456666553
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGD 417 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (603)
.+..+... ..+.+-...--+--+.|...+.+-|.-.++.++|+..|++.++.++. ....|+.+..-|....+...
T Consensus 308 --v~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 --VKNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred --HHhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 33222111 11111111101224455666777788888888888888888886543 55678888888888888888
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
|++.++...+-.+. |-..|-.+.++|.-.+...=|+-.|++..... |.|...|.+|+.+|.+.++.++|++.|.+...
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 88888888876433 77788888888888888888888888888776 77888888899999888899999998888888
Q ss_pred CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 498 KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 498 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.|-. +...+..++..|-+.++.++|...+++.++. |...+ ..+...|..-+.+.+++++|..+.......
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 6544 6678888888888888888888888877652 31112 223344666677888888887777666643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-14 Score=140.01 Aligned_cols=288 Identities=11% Similarity=-0.002 Sum_probs=134.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHHhcCChHHH
Q 037409 307 DGKMDKVNRLLELMIQRGVNPDT-VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVY--SYNILINANCKDQKVEDA 383 (603)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A 383 (603)
.|+++.|.+.+.+..+.. |++ ..+-....+....|+.+.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 455555555554444332 221 112222334444455555555555544431 2221 122234444455555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH---HHhCCCHHHHHHHHHHH
Q 037409 384 VCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG---LCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~ 460 (603)
...++.+.+..+. +...+..+...+...|++++|.+++..+.+.++.+.......-..+ ....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555554322 3344455555555555555555555555544332111110100111 11112222222333333
Q ss_pred HHcCC---CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 037409 461 RNCKC---ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC-STMIHWLCKEGQMDKANDLLLDMEAKNCV 536 (603)
Q Consensus 461 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 536 (603)
.+... +.++..+..++..+...|+.++|.+.+++..+..+.+....+ ..........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 32211 135566666666666666666666666666664333211111 111111223455566666666666542 3
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 537 PSE--VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 537 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.|+ .....+++.+.+.|++++|.+.+++....... |+++.+..++..+.+.|+.++|.+++++-
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344 44556666666666666666666643332233 55555666666666666666666666653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-14 Score=136.56 Aligned_cols=293 Identities=8% Similarity=0.033 Sum_probs=160.9
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLN--LLINCLC 127 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 127 (603)
+..+.+....|+++.|++......+..+.| ...+.....+..+.|+++.|...+.++.+. .|+..... .....+.
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 455555555677777776666654432221 222333334446677777777777777654 33432222 2345666
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcC
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV-------VTFNTLINGLCRTR 200 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g 200 (603)
..|+++.|...++++.+..+. +..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777777666543 5566666677777777777777777777665422111 11222222222333
Q ss_pred ChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037409 201 NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC 280 (603)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 280 (603)
+.+...++++...+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++++
T Consensus 244 ~~~~l~~~w~~lp~~----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 244 GSEGLKRWWKNQSRK----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred CHHHHHHHHHhCCHH----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 444444445544433 3445555666666666666666666666666553 2233111 2223334466666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 281 LFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
..+...+.. +-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 316 ~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666665542 334445556666666666666666666666654 45555555666666666666666666665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-14 Score=137.78 Aligned_cols=298 Identities=9% Similarity=-0.047 Sum_probs=132.8
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHh
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDL--FVLNLLINCLCK 128 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 128 (603)
..+.+....|+++.|.+.+.+..+..|.| ...+-....+..+.|+++.|.+.+.++.+.. |+. .........+..
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHH
Confidence 34444445566666666666555544332 2233344455555566666666666655432 222 222223555555
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH---HHHHHhcCChHHH
Q 037409 129 MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTL---INGLCRTRNTLVA 205 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A 205 (603)
.|+++.|...++.+.+..+. +..++..+...+.+.|++++|.+.++.+.+.+..+.......- .......+..+++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666666666555433 4445555555666666666666666666555422111110100 0111122222222
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT---YNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~ 282 (603)
.+.+..+.+......+.+...+..++..+...|+.++|.+++++..+.. |+... ...........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333333332100011244555555555555555555555555555542 12111 011111112234444455555
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 283 IEMMDNGVQPDV--VTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSM 355 (603)
Q Consensus 283 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 355 (603)
+...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444431 1122 3334444555555555555555553222222344444445555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-13 Score=124.59 Aligned_cols=224 Identities=11% Similarity=0.097 Sum_probs=147.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHH
Q 037409 304 NCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDA 383 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 383 (603)
+.-.|+.-.+..-|+..+.....++. .|..+..+|...++.++.++.|+.....+ +-++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44467777777777777776544322 26666667777778888888888777765 33666777777777777778888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 384 VCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
..-|++.+...+. +...|..+.-+..+.+.++++...|++.++. ++..+..|+...+.+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888777765332 4455555555556677777777777777665 3335667777777777777777777777777653
Q ss_pred CCC-----CCh--HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 464 KCE-----LRI--ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 464 ~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
... .++ .+.-.++..- -.+++..|..++.+..+.+++ ....+..|+..-.+.|+.++|+++|++....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 211 111 1112222211 236777778888777776665 5566777777777778888888887776653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-14 Score=136.35 Aligned_cols=283 Identities=10% Similarity=0.005 Sum_probs=167.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHHHH
Q 037409 272 VDDWKEAKCLFIEMMDNGVQPDVVT-FNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTY--NSLMDGFCLVGRISRA 348 (603)
Q Consensus 272 ~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 348 (603)
.|++++|.+.+....+.. +++.. +........+.|+++.+...+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777777766655432 12222 222233446777777777777777655 3333222 2335566777777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHH
Q 037409 349 RELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI-------TYNTLLSGLFQVGNLGDALKL 421 (603)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 421 (603)
.+.++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777664 3355666677777777777777777777777664432221 222223333333444555555
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 422 IDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+.+++..+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 5555332 1235555666666666777777777777666652 3344222 122223446666677777666666554
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
|...+..++..+.+.+++++|.+.|+++.+. .|+...+..+..++.+.|+.++|..++++...
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5556666666777777777777777777664 46666666666777777777777777666653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-13 Score=125.11 Aligned_cols=471 Identities=10% Similarity=-0.047 Sum_probs=276.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+..-+..+.+-+..+.++..|.-+-++.... ..|+.....+.+++.-.|++.+|..++..-.-. ..|.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l--~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGL--TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc--cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 4556777777777788888888887777655 366677777888888888898888777554222 336667777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhc--CCCCcHHH----------H-----HH-------HHHHHHhcCChHHHHHHHHHHHHh
Q 037409 160 GLCAEGRIMEAARLFKKLNVF--ACDPNVVT----------F-----NT-------LINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----------~-----~~-------l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
.+.+..++++|..++...... .+.-+..+ + +. -...|....+.++|...|.+.+.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~- 169 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL- 169 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh-
Confidence 888888899998888732110 00000000 0 00 01122223344444444444433
Q ss_pred cCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 216 FGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI----NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ 291 (603)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 291 (603)
.|...+..+...-.. ..-.+.+.++.+..... ..+......+.........-+.....-++..-.+..
T Consensus 170 ------~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 170 ------ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA 241 (611)
T ss_pred ------cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh
Confidence 233333322211111 01111111222211100 001111111111100000000000000000011223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 037409 292 PDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILI 371 (603)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (603)
.+......-..-+...+++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.++++.- |....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 344445555566667778888888888877764 3344555555566777777766666666666652 44567777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 372 NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 372 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
.-|.-.|+..+|.+.|.+....+.. =...|-.+...|+..|..++|+..+...-+.- +-...-+..+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 7777778888888888877654322 13457777778888888888888777664431 112222333445577778888
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC----CCC-C-CHhHHHHHHHHHHHcCChhHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK----GPI-P-DVVTCSTMIHWLCKEGQMDKAND 525 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~A~~ 525 (603)
.|.+.|.+..... |.|+..++.+.-.....+.+.+|...|+..+.. +.+ + -..+++.|+++|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888888877654 667777777777777778888888888877631 111 1 13457778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 526 LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
.+++.+... +.+..++..++-.|...|+++.|.+.+.+.+...
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 888888774 6678888888888888888888888888887644
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-11 Score=114.43 Aligned_cols=503 Identities=12% Similarity=0.121 Sum_probs=289.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSN-GLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+..|...+..+.++|+...-...|++++.. .+......|...+......|-++.+..++++.++. ++..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 356778888888888888888888887764 33334557777777777888888888888888876 3344666777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHHhcCCccCCChhhHHHH
Q 037409 160 GLCAEGRIMEAARLFKKLNVFA------CDPNVVTFNTLINGLCRTRNTL---VALKLFEEMVNEFGAICKPDVVTYNSI 230 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~l 230 (603)
.++..++.++|.+.+..+.... .+.+...|..+-....+..+.- ....+++.++.+. ...-...|.+|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf---tDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF---TDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC---cHHHHHHHHHH
Confidence 7888888888888888765321 1344455666666666544322 2334444444432 11224567888
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHC
Q 037409 231 IDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD----------------------DWKEAKCLFIEMMDN 288 (603)
Q Consensus 231 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~~~~~ 288 (603)
.+.|.+.|.+++|.++|++....- .++.-|+.+.+.|+.-. +++-.+.-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 888888888888888888876641 23444444444443211 123333444444433
Q ss_pred C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCCHHHHHHH
Q 037409 289 G-----------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPD------TVTYNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 289 ~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 351 (603)
+ -+.++..|..-+.. ..|+..+....+.++.+. +.|. ...|..+.+.|-..|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 1 12233344333332 255666677777777654 2221 24577888888889999999999
Q ss_pred HHHHHHcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------------CHhhHHHHHHHHHh
Q 037409 352 FVSMVSKGCRHD---VYSYNILINANCKDQKVEDAVCLYREMLSERIRP-----------------SVITYNTLLSGLFQ 411 (603)
Q Consensus 352 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~ 411 (603)
|++..+...+.- ..+|.....+-.+..+++.|+++.++.......| +...|..+++.--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 988887643321 2344444555556778888888888766532111 22345556666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHh-C--CChhH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI-ETYNCLINGLCK-M--GRLKT 487 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~--g~~~~ 487 (603)
.|-++....+++.+....+. ++.........+..+.-++++.++|++-....-.|+. .+|+..+.-+.+ - ..++.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 77788888888888766544 3333333333344556677888887776655434443 566665555443 2 26788
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHH--HHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 488 ACKLFHRLQHKGPIPDVVTCSTMI--HWLCKEGQMDKANDLLLDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLH 563 (603)
Q Consensus 488 A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (603)
|..+|++.++. .+|...-+-.|+ ..--+.|-...|+.+++++... +++. ...|+..+.--...=-......+|+
T Consensus 569 aRdLFEqaL~~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 569 ARDLFEQALDG-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 88888888873 334322222222 2222456667777777776543 2222 1223333322222112233444555
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 564 KMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 564 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
++++.-+.....+.....++.-.+.|..+.|+.+|
T Consensus 647 kaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 647 KAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 55443211011123333444444555555555554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-15 Score=138.28 Aligned_cols=288 Identities=12% Similarity=0.018 Sum_probs=187.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGV--NPDTVTYNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 351 (603)
+..+|...|..+... +.-.......+..+|...++++++.++|+.+.+..+ .-+..+|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 233335556667777777788888887777776531 1244566666543321 223333
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV 431 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (603)
+.+-+-.--+..+.+|.++.++|.-+++++.|++.|++.++.+.. ...+|+.+..-+.....+|.|...|+..+...+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 322222212445677777777777777777777777777765322 4566777777777777777777777777653222
Q ss_pred CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHH
Q 037409 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMI 511 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 511 (603)
+-..|..+...|.+.++++.|+-.|+++.+.+ |.+......++..+-+.|+.++|+.+++++...+++ |+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 33445556667777777777777777777665 556666777777777777777777777777776666 555555566
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..+...+++++|+..++++.+. ++.+..++..++..|.+.|+.+.|+.-+.-+.+..++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6677777777777777777775 2444556777777777777777777777777765554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=146.32 Aligned_cols=256 Identities=14% Similarity=0.096 Sum_probs=84.9
Q ss_pred hccCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 037409 56 KSGNITSNEAVYFFDCMIKMK-PSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSG 134 (603)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (603)
....|++++|++++++..... ++.+..-|..+.......++++.|+..++++...+ +.++..+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccc
Confidence 334567777777775544333 33455566666666666777777777777776654 3345555555555 56677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA-CDPNVVTFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
|..+++...+.. ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.+++++
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666655442 344555566666667777777777777655422 23455566666677777777777777777777
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+. .|.|......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|+.+|++..... +.|
T Consensus 174 ~~----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 174 EL----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HH-----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred Hc----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 65 24456666666667777777776666666665542 3355566666677777777777777777766643 345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (603)
......+..++...|+.++|.++.+++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666666666667777777766665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-12 Score=111.24 Aligned_cols=456 Identities=12% Similarity=0.125 Sum_probs=272.0
Q ss_pred HHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037409 47 IAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCL 126 (603)
Q Consensus 47 ~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (603)
+..|+.. .|+.+|+.+++-.+..+..-...+-.-+...+.+.|++++|+..|..+.... .++......+.-++
T Consensus 29 Ledfls~------rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSN------RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhc------ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHH
Confidence 4456654 4899999999988765433222222235667789999999999999988765 56677777777778
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVAL 206 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 206 (603)
.-.|.+.+|..+-....+ +.---..+.....+.++-++-.+..+.+.. ....-.+|.......-.+.+|+
T Consensus 102 FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHH
Confidence 888999999888766533 233334445555667777666666655542 2233444555555566789999
Q ss_pred HHHHHHHHhcCCccCCChhhHHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 207 KLFEEMVNEFGAICKPDVVTYNS-IIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
+++..++..+ |+-...|. +.-+|.+..-++-+.+++.-..+. ++.++...|.......+.=.-..|.+-.+++
T Consensus 172 dvYkrvL~dn-----~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 172 DVYKRVLQDN-----PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHhcC-----hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 9999998753 44444444 445677888888888888877764 4445555665555554443334455555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037409 286 MDNGVQPDVVTFNAMINYNCKD-----GKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC 360 (603)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 360 (603)
.+.+-.. | ..+.-.++. .+-+.|.+++-.+.+. -|. .-..++--|.+.++..+|..+..++...
T Consensus 246 adN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-- 314 (557)
T KOG3785|consen 246 ADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT-- 314 (557)
T ss_pred Hhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--
Confidence 5543111 1 112222222 2345666666655543 122 2223444477788888887776655321
Q ss_pred CCCcchHHHHHHH-----HHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 037409 361 RHDVYSYNILINA-----NCKDQKVEDAVCLYREMLSERIRPSV-ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS 434 (603)
Q Consensus 361 ~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (603)
.|.......++.+ ........-|.+.|+-.-..+..-|+ ..-.++...+.-..++++++.+++.+...-...|.
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~ 394 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD 394 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 1111111122111 11122234455555444333332222 12334555555667788888888877765444344
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhH-HHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVT-CSTMIHW 513 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~ 513 (603)
..+ .+.++.+..|++.+|+++|-.+....++.+..-...|.++|.+++.++.|..++-++-. ..+..+ +..+...
T Consensus 395 Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 395 FNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIAND 470 (557)
T ss_pred hhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHH
Confidence 333 56778888888888888887776544444444456677788888888888777655543 112333 3445556
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
|.+.+.+=-|.+.|..+... .|++..|
T Consensus 471 CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 77888887777778777764 4666555
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-13 Score=115.71 Aligned_cols=268 Identities=15% Similarity=0.097 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCcchHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD---LFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
.++.|+.+|-+|++.+|. ...+.-++++.|-+.|..+.|+.+...+.+..-.+. ..+...+.+-|...|-+++|.+
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455555555555554433 444555555555555556666555555554311111 1123334455555555555555
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVV----TFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
+|..+...+.- -..+...|+..|-...++++|+.+-+++.+.+-++..+ .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55555443211 23344445555555555555555555555443222211 23334444444455555555555555
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+.+ +..+.+-..+.+.....|+++.|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+.. +.
T Consensus 208 qa~----~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 208 QAD----KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred hhC----ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 542 223333334445555555555555555555554333333444455555555555555555555555442 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDG 338 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (603)
...-..+...-....-.+.|...+.+-+.. .|+...+..++..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 222223333223333334444444333333 3444444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-12 Score=117.09 Aligned_cols=463 Identities=16% Similarity=0.109 Sum_probs=288.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
..++..|.-+-+++....- ++..-.-+++++.-.|+++.|..+...-.-. ..|.........++.+..++++|..+
T Consensus 29 q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~v 104 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLV 104 (611)
T ss_pred HHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888877653 3344445778888888888888877765332 45666777778888888899998888
Q ss_pred HHHHHHC--CCCCCHhh-HH--------------HHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRS--CFTPNTVT-FN--------------FLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRN 201 (603)
Q Consensus 139 ~~~~~~~--~~~~~~~~-~~--------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (603)
+...... .+.-+... -+ .-...|.-.|.+-.|.+-+++... ......++.+.+
T Consensus 105 l~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~------~Y~~Al~~D~~c---- 174 (611)
T KOG1173|consen 105 LGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARD------KYKEALLADAKC---- 174 (611)
T ss_pred hcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHH------HHHHHHhcchhh----
Confidence 8743111 01101111 00 001111222333333333333221 111111112211
Q ss_pred hHHHHHHHHHHHHhcCC----------------ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 037409 202 TLVALKLFEEMVNEFGA----------------ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSL 265 (603)
Q Consensus 202 ~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 265 (603)
.+.|+.++...-- ....+......+.........-++....-.+..-.+..-+.......
T Consensus 175 ----~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 175 ----FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred ----HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 1112222211000 00011111111111110000111111111111111233455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 266 ICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRI 345 (603)
Q Consensus 266 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 345 (603)
.+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+=.++.+.- +..+.+|-.+.--|...|..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence 777788899999999999988874 6666677777778888888877777777777663 33667888888888888999
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 346 SRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKM 425 (603)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (603)
++|.+.|.+....+ +.-...|-.+...|.-.+..++|+..+..+.+.-. -....+--+.--|.+.++.+.|.+.|.+.
T Consensus 329 seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 329 SEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999887763 11345788888889999999999998887766411 11122333444578889999999999888
Q ss_pred hhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-C-ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC
Q 037409 426 QLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC----KCE-L-RIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499 (603)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 499 (603)
.... +.|+...+.+.-.....+.+.+|..+|+..+.. ..+ + ...+++.|+.+|.+++.+++|+..+++.+...
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 7653 336777777777777788999999999877621 111 1 24568889999999999999999999999876
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 500 PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 500 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
++ +..++.+++..|...|+++.|++.|.+.+.. .|+..+...++.
T Consensus 486 ~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 486 PK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLK 530 (611)
T ss_pred CC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 66 8889999999999999999999999998875 577655555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=135.57 Aligned_cols=278 Identities=11% Similarity=0.018 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCcchHHHHHHHHHhcCChHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC--RHDVYSYNILINANCKDQKVEDAVCL 386 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 386 (603)
+..+|...|..+..+ +..+..+...+..+|...+++++|+++|+.+.+... -.+...|...+.-+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 345666666663333 333445556666677777777777777777665420 113344444433221 1 112222
Q ss_pred H-HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037409 387 Y-REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC 465 (603)
Q Consensus 387 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 465 (603)
+ +.+... -+..+.+|.++..+|.-+++++.|++.|++....+.. ...+|+.+..-+.....++.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 2235566777777777777777777777776654322 45666666666666667777777777666433
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+-+..+|..++-.|.+.++++.|+-.|+++.+.+|. +.+....++..+-+.|+.++|+++++++...+ +.|+..-..-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 223445555666677777777777777777776655 56666666666667777777777777777664 4555555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+..+...+++++|+..++++.+.-+ .+..++..++..|-+.|+.+.|+.-|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccchHHHHhh
Confidence 6666667777777777777766443 36666677777777777776666544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-10 Score=106.08 Aligned_cols=522 Identities=10% Similarity=0.053 Sum_probs=347.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPS-PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
-+|++..-+..|++++..=|- .....|...+.-....|-++-++.+|++.++. ++....--+..++..++.++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 368889999999999876543 34567999999888999999999999999965 4455777788899999999999
Q ss_pred HHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHhHHH---HHHHHHHhcCCCCcH--HHHHHHHHHHHhcCChHHH
Q 037409 137 VVLGRILRSC------FTPNTVTFNFLINGLCAEGRIMEAA---RLFKKLNVFACDPNV--VTFNTLINGLCRTRNTLVA 205 (603)
Q Consensus 137 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 205 (603)
+.+..++... .+.+-..|..+-....+..+.-..+ .+++.+... -+|. ..|++|..-|.+.|.+++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9998877542 2345667777777666654433322 333333322 3444 4689999999999999999
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHHhc----------------C------ChhHHHHHHHHHhhCC---------
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD----------------G------FVDKAKELLLQMKDRN--------- 254 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~~~~~~--------- 254 (603)
.++|++.+..- ..+.-|..+.+.|+.. | +++-....|+.+..+.
T Consensus 268 rDvyeeai~~v-----~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 268 RDVYEEAIQTV-----MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHhh-----eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999988752 3333444444444321 1 1222333444443331
Q ss_pred --CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 255 --INPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD------VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN 326 (603)
Q Consensus 255 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (603)
-+.++..|..-+. +..|+..+-...|.+.... +.|. -..|..+...|-..|+++.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 1223444443333 2456777888888888765 2222 246888999999999999999999998876433
Q ss_pred CC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------C------CcchHHHHHHHHHhcCChHHHHHH
Q 037409 327 PD---TVTYNSLMDGFCLVGRISRARELFVSMVSKGCR-----------H------DVYSYNILINANCKDQKVEDAVCL 386 (603)
Q Consensus 327 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~A~~~ 386 (603)
-- ..+|..-..+-.+..+++.|.++++.+...... + +...|...++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 234555555556777889999988887643211 1 223345555555667888888899
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHh---CCCHHHHHHHHHHHHH
Q 037409 387 YREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS-FTFATYIDGLCK---NGFVLEAVQVFQAIRN 462 (603)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 462 (603)
++++++..+. ++.......-.+-.+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ...++.|..+|++.++
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999887654 3333333333455666788999999988776555654 355555544433 3468999999999998
Q ss_pred cCCCCChH--HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 037409 463 CKCELRIE--TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS 538 (603)
Q Consensus 463 ~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 538 (603)
+.||... .|......--+.|-...|+.+++++... +.+. ...||.+|.--...=-......+|+++++. -|+
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~ 654 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPD 654 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CCh
Confidence 6565432 2333333334568888999999997664 3322 346777776554444455667889999886 466
Q ss_pred HHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 539 EVTF---CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 539 ~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
...- ...+..-.+.|..+.|..+|....+...+-.+.+.|...-..-.+-|+-+.-.+++
T Consensus 655 ~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5443 33455567899999999999988765332267888888888888999955544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.9e-13 Score=113.09 Aligned_cols=302 Identities=17% Similarity=0.135 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC---CHhhHHHHHH
Q 037409 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTP---NTVTFNFLIN 159 (603)
Q Consensus 83 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~ 159 (603)
.|..-++.+. +++.++|.+.|-+|++.+ +....+...+++.|.+.|..++|+.+++.+.+.---+ ...+...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3444444443 677899999999999865 5556677888999999999999999999888752111 1224555777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC-hhhHHHHHHHHHhcC
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD-VVTYNSIIDGLCKDG 238 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 238 (603)
-|...|-++.|..+|..+.+.+ ..-..+...|+..|-...++++|++.-+++.+.++...... ...|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 7888999999999999887644 33455677888888888999999998888887652111111 122334455555566
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 239 FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLE 318 (603)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (603)
+++.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777777665322 3444455566677777777777777777766443334556666677777777777777777
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 037409 319 LMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK---DQKVEDAVCLYREMLS 392 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 392 (603)
.+.+....+ ..-..+........-.+.|...+.+-+.. +|+...+..++..... .|...+.+.++++|..
T Consensus 274 ~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 274 RAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 766653222 22233333333333345555554444444 4566666666655433 2234444444555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-12 Score=114.61 Aligned_cols=286 Identities=14% Similarity=0.086 Sum_probs=179.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (603)
..|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.++-+....++....-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 467888888887776666522 2334444555566677888888888777766444555666666677777777788877
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHHHH
Q 037409 351 LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI-------TYNTLLSGLFQVGNLGDALKLID 423 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 423 (603)
-++++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777777764 3355666777777777888888887777777776554432 34444444444444444444555
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC
Q 037409 424 KMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD 503 (603)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 503 (603)
..... .+.++..-.+++.-+..+|+.++|.++.++..+....++ ....-.+.+-++.+.-++..++..+..+. +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 54332 223444555666666677777777777766666554444 11122344555666666666665554443 4
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+..+.+|+..|.+++.|.+|.+.|+..++. .|+..+|..++.++.+.|+.++|.+..++.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 556666777777777777777777766664 4666777777777777777777776666665
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-11 Score=115.27 Aligned_cols=477 Identities=11% Similarity=0.015 Sum_probs=284.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhH
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLLIN---CLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIME 169 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (603)
..+....++.-+......+++.++.++..+-. .|...++.++. .++. .+.. .+....+.++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lll-li~e--------------s~i~Re~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLL-LIEE--------------SLIPRENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHH-HHHh--------------hccccccHHH
Confidence 34566777777777777776666666555432 22333333333 1111 1111 1222233333
Q ss_pred HHHH----HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHH
Q 037409 170 AARL----FKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKE 245 (603)
Q Consensus 170 A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 245 (603)
+... +.++....+.-|...|..+.-++.+.|+++.+.+.|++.... .-.....|..+...+...|.-..|..
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ 378 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVN 378 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHH
Confidence 3221 222222223456677777777778888888888888887654 23445677788888888888888888
Q ss_pred HHHHHhhCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------C
Q 037409 246 LLLQMKDRNINPNVITYNSLI-CGFC-CVDDWKEAKCLFIEMMDN--GV--QPDVVTFNAMINYNCKD-----------G 308 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~ 308 (603)
+++........|+..+-..++ ..|. +.+.+++++++-.+..+. +. ......+..+.-+|... .
T Consensus 379 ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~ 458 (799)
T KOG4162|consen 379 LLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDA 458 (799)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHH
Confidence 887765543234333333333 3333 346667777666666552 11 11223333333333321 1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR 388 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 388 (603)
...++.+.+++..+.+.. |+.+...+.--|+..++.+.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 459 ~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 245677777777766543 3333333444477788888888888888887656677888888888888888888888887
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----------------------------CCCCCHHhHHHH
Q 037409 389 EMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN----------------------------DVVPDSFTFATY 440 (603)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l 440 (603)
.....-.. |......-+..-..-++.++++.....+... .......++..+
T Consensus 538 ~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 538 AALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 76654111 1111111111112234444444333322110 000011111111
Q ss_pred HHHHHhCC---CHHHHHHHHHHHHHcCCC--CC------hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHH
Q 037409 441 IDGLCKNG---FVLEAVQVFQAIRNCKCE--LR------IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCST 509 (603)
Q Consensus 441 ~~~~~~~g---~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 509 (603)
..-....+ ..+.. +.+.... |+ ...|......+.+.++.++|...+.+.....+. ....|..
T Consensus 617 s~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~ 689 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYL 689 (799)
T ss_pred HHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHH
Confidence 11111000 00000 1111111 11 234556667788889999999888888886544 6677888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV--LLHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
.+..+...|.+.+|.+.|..+...+ |.+..+...++.++.+.|+..-|.. ++..+++.++. +++.|..++..+-+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEVFKK 766 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Confidence 8888899999999999999999875 5567788999999999999888877 99999987775 89999999999999
Q ss_pred CCcHHHHHHHHHhh
Q 037409 588 DKKYRECLNQFRHL 601 (603)
Q Consensus 588 ~g~~~eA~~~~~~~ 601 (603)
.|+.++|.+.|...
T Consensus 767 ~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 767 LGDSKQAAECFQAA 780 (799)
T ss_pred ccchHHHHHHHHHH
Confidence 99999999888653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.5e-12 Score=110.92 Aligned_cols=286 Identities=12% Similarity=0.045 Sum_probs=154.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 037409 94 NKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARL 173 (603)
Q Consensus 94 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 173 (603)
.|+|.+|.+...+..+.+ +-....|..-+.+-...|+.+.+-.++.++.+.-.+++..+..+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455666666555555544 1122233333445555556666666665555554444455555555555556666666555
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC-------hhhHHHHHHHHHhcCChhHHHHH
Q 037409 174 FKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD-------VVTYNSIIDGLCKDGFVDKAKEL 246 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 246 (603)
.+++.+.+ +.+........++|.+.|++.+...++.++.+.+ .-.+ ..+|..+++-....+..+.-...
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~---~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG---LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc---CCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 55555543 4444555555566666666666666666555543 1111 23445555554444444444444
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 247 LLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN 326 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (603)
++..... ..-++..-.+++.-+.++|+.++|.++.++..+.+..|+ -.....+.+-++...-++..+.-.+.. +
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~ 325 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-P 325 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence 5444332 233455555566666666666666666666666544333 112223444555555555555544432 2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037409 327 PDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLS 392 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (603)
.++..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+++++.+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 24455666666666666677776666665554 45666666666666667776666666666543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-10 Score=108.50 Aligned_cols=424 Identities=13% Similarity=0.058 Sum_probs=208.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.+.+..-++..+.++...|. ...+....+-.+...|+.++|....+..++.+ .-+...|..++-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45666666666666665443 34455555555566677777777777766654 34455666666666666777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
|..+.+.+.+ |...|.-+.-.-++.|+++.....-.++.+.. +.....|..+..+..-.|++..|..++++..+...
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 7777776543 66666666655666677766666666655542 33445666666677777777777777777666532
Q ss_pred ccCCChhhHHHHHHHH------HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037409 219 ICKPDVVTYNSIIDGL------CKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP 292 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 292 (603)
..|+...+......+ .+.|..++|.+.+...... +......-..-...+.+.+++++|..++..++.. .|
T Consensus 175 -~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 -TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 234444444333322 2355556665555444332 1112222233445566667777777777777665 35
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 037409 293 DVVTFNAMINYNC-KDGKMDKVN-RLLELMIQRGVNPDTVT-YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNI 369 (603)
Q Consensus 293 ~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
|...|...+..+. +-.+.-++. .+|....+. .|.... ...-+.......-.+..-+++....+.|+++ ++..
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 5554444433332 222222222 444443332 111111 1111111111122333344455555555332 3333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh----CC----------CCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037409 370 LINANCKDQKVEDAVCLYREMLS----ER----------IRPSVITYN--TLLSGLFQVGNLGDALKLIDKMQLNDVVPD 433 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~----~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (603)
+...|-.....+-..++...+.. .+ -+|....|+ .++..+-..|+++.|..+++..... .|+
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPT 403 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPT 403 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cch
Confidence 43333222211111111111111 00 123333332 2334455556666666655555543 222
Q ss_pred -HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC
Q 037409 434 -SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499 (603)
Q Consensus 434 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 499 (603)
...|..-.+.+...|++++|..++++..+.+ .+|..+-.--+.-..+.++.++|.++.....+.|
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 2233333345555556666666655555544 2333333334444445555566655555555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-11 Score=105.28 Aligned_cols=449 Identities=11% Similarity=0.052 Sum_probs=286.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRI 167 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 167 (603)
+.-+..+.++..|+.+++-....+-.-...+-..+.-++...|++++|...+..+... ..++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4456678899999999988775542222234445667888999999999999988875 456777888888888888999
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELL 247 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 247 (603)
.+|.++-.+.. .++.--..+...-.+.++-++-....+.+... ..--.++.......-.+++|++++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~--------~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--------LEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--------HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99998877653 23334444556666777776666665555442 233345566555666799999999
Q ss_pred HHHhhCCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 248 LQMKDRNINPNVITYNS-LICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN 326 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (603)
.++... .|+....|. +.-+|.+.+-++-+.++++..++. ++.+....|..+....+.=+-..|.+-...+.+.+-.
T Consensus 175 krvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 175 KRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 999875 344444444 345677888889899999888776 2334444554444444433333333444444443321
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 037409 327 PDTVTYNSLMDGFCLV-----GRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVIT 401 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 401 (603)
. | ..+.-.++. ..-+.|++++-.+.+. -+..--.|+--|.+.+++++|..+..++... ++.-
T Consensus 252 ~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~E 318 (557)
T KOG3785|consen 252 E----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYE 318 (557)
T ss_pred c----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHH
Confidence 1 1 112222222 2446788877776654 2233344666788999999999998876431 2222
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHH
Q 037409 402 YNTLLSGLFQVGN-------LGDALKLIDKMQLNDVVPDSF-TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYN 473 (603)
Q Consensus 402 ~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 473 (603)
|..-.-.++..|+ ..-|...|+..-..+..-|.. --.++...+.-..++++.+..++.+.......|... .
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~ 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-L 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-h
Confidence 2222222333333 445566665554333222221 122344445555678889988888887654444444 4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC-STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV-TFCTLLRGFVQ 551 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 551 (603)
.+..+++..|++.+|+++|-++....++ |..+| ..+.++|.+.++.+.|+.++-++.. +.+.- .+..+++-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 6788999999999999999988876556 55565 4667889999999999887665532 22333 34556677888
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 037409 552 NNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+.+=-|.+.+..+....+.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHhhhHHHccCCC
Confidence 89887777777777665544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-10 Score=105.52 Aligned_cols=428 Identities=14% Similarity=0.119 Sum_probs=284.6
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 52 NDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
-|.....-|+.++|.......+..++. +.++|..++-.+-...++++|++.|+.++..+ +.+...+..+.-.-++.|+
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence 344445678999999999999887655 88899999988888889999999999999887 6778888888888889999
Q ss_pred cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCcHHHHHHHH------HHHHhcCChHH
Q 037409 132 TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA-CDPNVVTFNTLI------NGLCRTRNTLV 204 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~ 204 (603)
++.....-.+..+..+. ....|..++.++.-.|++..|..+.++..+.. -.|+...+.... ......|..++
T Consensus 125 ~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 99988888888776433 55678888888888999999999999887653 246666655443 34456788888
Q ss_pred HHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCCHHHHH-HHH
Q 037409 205 ALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYN-SLICGFCCVDDWKEAK-CLF 282 (603)
Q Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~ 282 (603)
|++.+...... +-.....-..-...+.+.+++++|..++..+..+ .||..-|. .+..++.+-.+.-+++ .+|
T Consensus 204 ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly 277 (700)
T KOG1156|consen 204 ALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALY 277 (700)
T ss_pred HHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88887776554 2222333345677888999999999999999987 34555444 4445554333444444 666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-
Q 037409 283 IEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK--G- 359 (603)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~- 359 (603)
....+. .+.....-..=+.......-.+....++..+.+.|+++ ++..+...|-.....+-..++.-.+... |
T Consensus 278 ~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 278 AILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccc
Confidence 665543 11111111111112212222445556777777888764 4445554443322222222222222111 1
Q ss_pred -----------CCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 360 -----------CRHDVYS--YNILINANCKDQKVEDAVCLYREMLSERIRPS-VITYNTLLSGLFQVGNLGDALKLIDKM 425 (603)
Q Consensus 360 -----------~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (603)
-+|.... +..++..+-+.|+++.|...++..+.. .|+ +..|..-.+.+...|++++|...+++.
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEA 431 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 1344433 345667788899999999999998875 333 345556668888999999999999999
Q ss_pred hhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHH----H------HHHHHHhCCChhHHHHHHHHH
Q 037409 426 QLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYN----C------LINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~------l~~~~~~~g~~~~A~~~~~~~ 495 (603)
.+.+ .+|...-..-..-..+.++.++|.++.....+.|. +..... + =+.+|.+.|++..|++-|..+
T Consensus 432 ~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 432 QELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred Hhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8875 34665554566667788999999999988887664 221111 1 134566667777777766665
Q ss_pred hh
Q 037409 496 QH 497 (603)
Q Consensus 496 ~~ 497 (603)
.+
T Consensus 509 ~k 510 (700)
T KOG1156|consen 509 EK 510 (700)
T ss_pred HH
Confidence 54
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-11 Score=114.85 Aligned_cols=412 Identities=13% Similarity=0.028 Sum_probs=231.6
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHH
Q 037409 149 PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYN 228 (603)
Q Consensus 149 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (603)
.+..+|..|.-++..+|+++.+.+.|++....- -.....|+.+...+...|....|+.++++...... .+++...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~--~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE--QPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc--CCCcchHHH
Confidence 355555555556666666666666666654321 22344566666666666666666666665554321 123333333
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHhhC--C--CCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 037409 229 SIIDGLC-KDGFVDKAKELLLQMKDR--N--INPNVITYNSLICGFCCV-----------DDWKEAKCLFIEMMDNGVQP 292 (603)
Q Consensus 229 ~l~~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~ 292 (603)
.....|. +.+..+++++.-.+.... + -...+..|..+.-+|... ....++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333332 344555555544444331 1 111233344444333221 11245556666665553 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 037409 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILIN 372 (603)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (603)
|......+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|-.....-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333344455566666666666666665445555666666666666666666666666555430 001111111111
Q ss_pred HHHhcCChHHHHHHHHHHHhC----------------------------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 373 ANCKDQKVEDAVCLYREMLSE----------------------------RIRPSVITYNTLLSGLFQVGNLGDALKLIDK 424 (603)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (603)
.-...++.++++.....++.. .......++..+.......+ ..+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-
Confidence 112234444443333222210 01111122222221111100 00000000
Q ss_pred HhhCCCC--CC------HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037409 425 MQLNDVV--PD------SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 425 ~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (603)
+...... |+ ...|......+.+.+..++|...+.+..+.. +.....|...+..+...|.+++|...|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1111111 22 1234455667788899999998888887754 6677888888888999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHHcCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 497 HKGPIPDVVTCSTMIHWLCKEGQMDKAND--LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 497 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..+|. ++.+..+++.++.+.|+..-|.. ++..+++.+ +.++..|..++..+.+.|+.++|.+.|..+.+....
T Consensus 712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 97776 77889999999999998887777 999999987 778999999999999999999999999999875443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-12 Score=130.13 Aligned_cols=269 Identities=10% Similarity=0.009 Sum_probs=159.2
Q ss_pred CCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCcchHHHHHHHH
Q 037409 77 PSPGMTSFTILLTMLAK-----NKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK---------MGITSGAFVVLGRI 142 (603)
Q Consensus 77 ~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 142 (603)
+..+..+|...+++... .+++++|+..|+++++.. |.+...+..+..++.. .+++++|...++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 33455555555554311 235777777777777664 4445555555544432 23366777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
++..+. +..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|+..++++.+.. |.
T Consensus 331 l~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----P~ 404 (553)
T PRK12370 331 TELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD----PT 404 (553)
T ss_pred HhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CC
Confidence 777544 56677777777777777888888877777663 3345567777777777788888888887777753 22
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 302 (603)
+...+..++..+...|++++|...+++......+-++..+..+..++...|+.++|...+.++.... +.+....+.+..
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~ 483 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYA 483 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHH
Confidence 3333333444556677777777777776654322244456666777777788888887777765541 223334445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037409 303 YNCKDGKMDKVNRLLELMIQRGV-NPDTVTYNSLMDGFCLVGRISRARELFVSMVSK 358 (603)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (603)
.+...| +.+...++.+.+..- .+....+ +-..+.-.|+.+.+... +++.+.
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 566666 366666665544311 1111112 33345556666665555 666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=112.91 Aligned_cols=225 Identities=10% Similarity=-0.015 Sum_probs=137.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
+.+..+|.+.|-+.+|.+-|+..+.. .|-+.||..|-..|.+..++..|+.++.+..+.- +-+........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 44556666666666666666665554 2344555566666666666666666666665531 11333333444555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
++.++|.++|+...+.. +.+++...++...|.-.++++.|.++++++++.|.. ++..|+.++-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666666654 555666666666666666666666666666666665 6666666666666666666666666
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 528 LDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 528 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
++++...-.|+ ..+|..++......||+..|.+.++-++..+.. +.+.++.|+-.-.+.|++++|+.+++
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~--h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ--HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc--hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 66665432333 345666666666666666666666666655443 56666666666666666666666664
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-11 Score=115.48 Aligned_cols=493 Identities=10% Similarity=0.029 Sum_probs=261.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 037409 71 CMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPN 150 (603)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 150 (603)
.+...+..|+-++|..+|..|+..|+.+.|- +|.-|.-...+.....++.++......++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3444556678899999999999999999998 9998887777778888899988888888877665 567
Q ss_pred HhhHHHHHHHHHhcCCHhH---HHHHHHHHH----hcCCC-CcHHH-------------HHHHHHHHHhcCChHHHHHHH
Q 037409 151 TVTFNFLINGLCAEGRIME---AARLFKKLN----VFACD-PNVVT-------------FNTLINGLCRTRNTLVALKLF 209 (603)
Q Consensus 151 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~----~~~~~-~~~~~-------------~~~l~~~~~~~g~~~~A~~~~ 209 (603)
..+|..|..+|...|+... ..+.++.+. ..|+- |.... -...+....-.|-++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998654 222222221 11211 11111 112223333344555555555
Q ss_pred HHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 210 EEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG 289 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 289 (603)
..+.... ... +....++-+... .....++....+...-.|++.+|..++.+-...|+.+.|..++.+|.+.|
T Consensus 163 ~~~Pvsa----~~~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 163 AKVPVSA----WNA--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred hhCCccc----ccc--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 4443221 001 111112222221 12222333222222114677788888888778888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 037409 290 VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNI 369 (603)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
++-+.+-|-.++-+ .++...+..+++-|...|+.|+..|+...+-.+.+.|....+.+ |.+ ....+.+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq-~~hg~tA 302 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQ-LAHGFTA 302 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccc-hhhhhhH
Confidence 77777766666654 66777777777777778888888777766665555443222111 111 1111111
Q ss_pred HHHHHHhcC-----Ch-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCC-CHHh
Q 037409 370 LINANCKDQ-----KV-----EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN--DVVP-DSFT 436 (603)
Q Consensus 370 l~~~~~~~~-----~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~ 436 (603)
-+..-.-.| +. .-....+.+..-.|+.....+|...+.. ..+|.-+++..+...+... ...+ +...
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 111111111 11 1111111111112222223334333332 2245555555554444211 1111 1122
Q ss_pred HHHHHHHHHh----------------------CCCHHHHHHHHHHH------------HH----cCCCCC-------hHH
Q 037409 437 FATYIDGLCK----------------------NGFVLEAVQVFQAI------------RN----CKCELR-------IET 471 (603)
Q Consensus 437 ~~~l~~~~~~----------------------~g~~~~a~~~~~~~------------~~----~~~~~~-------~~~ 471 (603)
+..++.-|.+ ..+..+..+..... .. ..+.+- -..
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 2222222111 11111111111111 10 001110 011
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPSEVTFCTLLRGF 549 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~ 549 (603)
-+.++..+++.-+..+++..-++.... . =...|..|+.-+....+.+.|..+.++..... ...|..-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 234445555555555555444444332 1 12567888888888888888888888876432 233555667788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 550 VQNNKKSKVVVLLHKMAAEKLVVS-DLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
.+.+....+.++++++.+.-...+ ...+...+.+.....|+.+.-.+..+
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d 589 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLAD 589 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence 888999999999998876322211 23455556666667777665555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-10 Score=108.14 Aligned_cols=443 Identities=14% Similarity=0.032 Sum_probs=230.1
Q ss_pred hhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 037409 55 HKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSG 134 (603)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (603)
.+...|+++.|+..|.+++..+|+ |-..|..-..+|++.|++++|++=-.+-++.. |.-+..|+..+.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHH
Confidence 455789999999999999999987 88889999999999999999999888877765 4457789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHH-----HHHHhcCChHHHHHHH
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLI-----NGLCRTRNTLVALKLF 209 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~ 209 (603)
|+..|..-++..+. |...++.+..++. .+.+. +.. ..++..|..+. +.+.....+..-++
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~-- 153 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE-- 153 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH--
Confidence 99999999887544 6777887877761 11111 111 11222222221 11111111111111
Q ss_pred HHHHHhcCCccCCChhhH---HHHHHHHHhcCChhHH-HHHHHHHh-hCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHH
Q 037409 210 EEMVNEFGAICKPDVVTY---NSIIDGLCKDGFVDKA-KELLLQMK-DRNINPNVITYNSLICGFCCVDDW-KEAKCLFI 283 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a-~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~ 283 (603)
.+..+ +.+...| ..++.+.......+.- ...-..+. ..+..|... .....-..++. ++.. .
T Consensus 154 --~~~~~----p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~-~-- 220 (539)
T KOG0548|consen 154 --IIQKN----PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERR-V-- 220 (539)
T ss_pred --HhhcC----cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc----cCCCCCccchhHHHHH-H--
Confidence 11111 0111111 0111111110000000 00000000 000111000 00000000000 0000 0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037409 284 EMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHD 363 (603)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 363 (603)
.--..-...+.....+..+++.+.+-+....... -+..-++....+|...|.....+......++.|.. .
T Consensus 221 -------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 221 -------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred -------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 0011122334444444455555555555544443 23333344444455555444444444443333211 0
Q ss_pred cch-------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh
Q 037409 364 VYS-------YNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFT 436 (603)
Q Consensus 364 ~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 436 (603)
... +..+..+|.+.++++.++..|.+.+.....|+. ..+....+++........-.++.. ..-
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e 360 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEE 360 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHH
Confidence 011 111333555566777777777776654333322 222333444444444333222211 111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 516 (603)
...-...+.+.|++..|+..|.++++.. |.|...|.+...+|.+.|++..|+.-.+..++.++. ....|..-+.++..
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHH
Confidence 1222455667788888888888877766 667778888888888888888888777777776443 45556656666667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 517 EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
..+|++|.+.|++.++.+ +.+......+.++..
T Consensus 439 mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 777888888888877764 333444444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-09 Score=105.84 Aligned_cols=53 Identities=8% Similarity=0.144 Sum_probs=43.2
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 546 LRGFVQNNKK-SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 546 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
+..+.+..++ ++|.++++-+.+.... +..++..-.++|.+.|++--|++.+++
T Consensus 463 GekL~~t~dPLe~A~kfl~pL~~~a~~--~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 GEKLLKTEDPLEEAMKFLKPLLELAPD--NIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCcc--chhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3444555554 8899999999988775 888999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-11 Score=123.06 Aligned_cols=251 Identities=11% Similarity=0.014 Sum_probs=183.8
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 037409 130 GITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA---------EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTR 200 (603)
Q Consensus 130 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (603)
+++++|...+++.++..+. +...|..+..++.. .+++++|...+++..+.. +.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3467899999999988554 56667666655442 345899999999999874 456778888889999999
Q ss_pred ChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037409 201 NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC 280 (603)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 280 (603)
++++|...|+++++.+ |.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|..
T Consensus 353 ~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLLS----PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999999873 556778888999999999999999999999887433 23333444555677899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 037409 281 LFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKG- 359 (603)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 359 (603)
.+++......+.+...+..+..++...|+.++|...++++..... .+....+.+...|...| +.|...++.+.+..
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 999988764233455677788888999999999999998766522 23344555666677777 47777777766641
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037409 360 CRHDVYSYNILINANCKDQKVEDAVCLYREMLSE 393 (603)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 393 (603)
..+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 12222222 34445556777777666 777665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-12 Score=110.70 Aligned_cols=234 Identities=12% Similarity=0.001 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (603)
-+.+.++|.+.|-+.+|.+.++..++. .|-+.+|..|-.+|.+..+++.|+.+|.+-++. .+.++....-+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467888999999999999999999887 567778888999999999999999999988775 33344445566778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.++.++|.++++...+.... +.....++...|.-.++++.|+.+|++++..| ..+++.|+++.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999876433 66677777778888899999999999999999 45899999999999999999999999
Q ss_pred HHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 492 FHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 492 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
|++.+..--.|+ ...|-.+.......|++..|.+.|+-.+..+ ..+...++.|+-.-.+.|++++|..+++.+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999887543343 5678889999999999999999999999876 5677889999999999999999999999998765
Q ss_pred CC
Q 037409 570 LV 571 (603)
Q Consensus 570 ~~ 571 (603)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 43
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-11 Score=110.54 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=131.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 037409 399 VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLING 478 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 478 (603)
...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455566666667777777777766655432 234555666666777777777777777776654 4455666677777
Q ss_pred HHhCCChhHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 479 LCKMGRLKTACKLFHRLQHKGPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
+...|++++|...++++.+....| ....+..++.++...|++++|...+++..+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776642211 34456666777777777777777777777654 4455667777777777788888
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 558 VVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
|...++++.+..+ .++..+..++.++...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTYN--QTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8777777776522 45666667777777777777777776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-09 Score=95.74 Aligned_cols=299 Identities=11% Similarity=0.046 Sum_probs=194.4
Q ss_pred cCChhHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 237 DGFVDKAKELLLQMKDR-NINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNR 315 (603)
Q Consensus 237 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (603)
.++...+...+-.+... -++.|+.....+..++...|+..+|+..|++....+ +-+..........+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 44444444444333322 255577788888888888888888888888877653 2223333344445567788887777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037409 316 LLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERI 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 395 (603)
+...+.... +.+...|..-+.......+++.|+.+-++.++.+ +.+...+-.-...+...+++++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 777776542 1123333333444456677888888877777653 2244444444566778888888888888876642
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH-HHHH-hCCCHHHHHHHHHHHHHcCCCCChHHHH
Q 037409 396 RPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI-DGLC-KNGFVLEAVQVFQAIRNCKCELRIETYN 473 (603)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 473 (603)
+-+..+|.-++.+|...|.+.+|...-+...+. ...+..+...+. ..|. ...--++|.++++...+.. |.-....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 236778888888888888888887776665433 122444444442 2222 2234577888887777654 44456777
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCT 544 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 544 (603)
.+...+...|..++++.++++.+.. .||....+.|+..+...+.+++|.+.|..++..+ |.|..+...
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~G 510 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLRG 510 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHHH
Confidence 7888888888888888888888773 5677788888888888888888888888888765 445444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-09 Score=93.05 Aligned_cols=401 Identities=12% Similarity=0.031 Sum_probs=263.1
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhcCCccCCChhhHH
Q 037409 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVALKLFEEMVNEFGAICKPDVVTYN 228 (603)
Q Consensus 150 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (603)
+...-...+..|...++-+.|+....+..... ...--+.++..+.+ .++..++.--+.+.+.. .+.....
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvre----cp~aL~~-- 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRE----CPMALQV-- 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHh----cchHHHH--
Confidence 44455556777888888888888877765321 11122333333333 33333444445555443 1222211
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 037409 229 SIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC--VDDWKEAKCLFIEMMDN-GVQPDVVTFNAMINYNC 305 (603)
Q Consensus 229 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 305 (603)
|.+..+.+ +..+...=..|-....+|+..+....+.++++ .++...|...+-.+... -++-|+.....+...+.
T Consensus 167 --i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 167 --IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY 243 (564)
T ss_pred --HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh
Confidence 22222211 11111111223333345555555555555543 34444444444333332 25667888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 306 KDGKMDKVNRLLELMIQRGVNPDT-VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
..|+.+++...|+.....+ |+. .......-.+...|+.+....+...+.... +.....|-.-.......++++.|+
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL 320 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERAL 320 (564)
T ss_pred hhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHH
Confidence 9999999999999987653 322 222222333457888888888888877652 112233333344455678899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK 464 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 464 (603)
.+-++.++.... +...+-.-...+...+++++|.-.|+..+...+ -+...|..|+.+|...|.+.+|...-+...+.-
T Consensus 321 ~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 321 NFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred HHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 999988876433 455566666778899999999999999887542 367899999999999999999998888776642
Q ss_pred CCCChHHHHHHH-HHHHh-CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 037409 465 CELRIETYNCLI-NGLCK-MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 465 ~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
+.+..++..+. ..|.- -.--++|.+++++.+...|. -....+.+...+...|+.++++.++++.+.. .||....
T Consensus 399 -~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH 474 (564)
T KOG1174|consen 399 -QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLH 474 (564)
T ss_pred -hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHH
Confidence 55666665553 33322 22357899999999886444 3556778888899999999999999999984 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..|+..+...+.+++|.+.|..++..+++
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999986654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-09 Score=96.85 Aligned_cols=451 Identities=13% Similarity=0.101 Sum_probs=253.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHH--HHHHHH-
Q 037409 86 ILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNF--LINGLC- 162 (603)
Q Consensus 86 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~- 162 (603)
+=+..+.++|++++|.+...+++.-+ +.|...+.+=+.++++.+.|++|+.+.+.-... .+++. +=.+|+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHHH
Confidence 34556677888888888888888765 666777777777888888888888655432211 11111 233333
Q ss_pred -hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 163 -AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 163 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
+.+..++|+..++-+. +.+..+...-...+.+.|++++|+++|+.+.+.+.. ..+...-..++..-. .-
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d--d~d~~~r~nl~a~~a----~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD--DQDEERRANLLAVAA----AL 159 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHH----hh
Confidence 6788888888887332 223346666677888888999999999888776411 111111111211110 01
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CH-HHHHHHHHHHHhc
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG-------VQP------DV-VTFNAMINYNCKD 307 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~ 307 (603)
.+ .+.+..... ...+...+......++..|++.+|+++++...+.+ -.- .. ..-..+..++-..
T Consensus 160 ~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 160 QV-QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hH-HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 11 122222221 11122233334556677888988888888873221 000 01 1122345566778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCCHH-HHHHHHHHHHHc-----------CCCCCcchHHHHH
Q 037409 308 GKMDKVNRLLELMIQRGVNPDTVT----YNSLMDGFCLVGRIS-RARELFVSMVSK-----------GCRHDVYSYNILI 371 (603)
Q Consensus 308 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~l~ 371 (603)
|+.++|..++...++.... |... .|.++.+-....-++ .++..++..... ...-....-+.++
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887543 4322 222222111111111 122222221111 0000111112233
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC
Q 037409 372 NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLF--QVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF 449 (603)
Q Consensus 372 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (603)
.+| .+..+.+.++-..... ..|. ..+..++.... +...+..+.+++...-+....-...+....++.....|+
T Consensus 317 ~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 317 ALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 333 2333444443333222 1222 33444443322 223577888888877665444445566677777888999
Q ss_pred HHHHHHHHH--------HHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC--CCCCCHh----HHHHHHHHHH
Q 037409 450 VLEAVQVFQ--------AIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK--GPIPDVV----TCSTMIHWLC 515 (603)
Q Consensus 450 ~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~ 515 (603)
++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++++.... .-.+... ++..++..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999998 4444433 3455666777788888888788888776652 1111222 3333444445
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 516 KEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
+.|+.++|..+++++.+.+ ++|..+...++.+|++. +.++|..+-+.+
T Consensus 470 r~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7799999999999999976 78888888898888765 467777665554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-11 Score=108.43 Aligned_cols=199 Identities=12% Similarity=-0.023 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555555566666666666666555443 334445555555555555555555555555554322 33445555555
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC
Q 037409 161 LCAEGRIMEAARLFKKLNVFAC-DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
+...|++++|.+.+++...... +.....+..+...+...|++++|...+++..... +.+...+..+...+...|+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID----PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCChHHHHHHHHHHHHcCC
Confidence 5555666666666665544211 1122344445555555666666666666655542 2334445555555555566
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMM 286 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 286 (603)
+++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66665555555544 22234444444555555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-08 Score=95.88 Aligned_cols=452 Identities=15% Similarity=0.085 Sum_probs=264.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 037409 119 LNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR 198 (603)
Q Consensus 119 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
+.+=+..+...|++++|.+...+++..+++ +..++..-+.++.+.+++++|+.+.+.-... ..+.+-+.--.-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 333455677889999999999999988744 5666666667788999999999666553211 1111111111223447
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCCHHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC-CVDDWKE 277 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 277 (603)
.+..++|+..++-. .+.+..+...-...+.+.|++++|+++|+.+.+.+.+ .+...+.+-+ ..+-...
T Consensus 92 lnk~Dealk~~~~~-------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 92 LNKLDEALKTLKGL-------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQ 160 (652)
T ss_pred cccHHHHHHHHhcc-------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhh
Confidence 89999999999832 2234556677788899999999999999999876432 2222221110 1110011
Q ss_pred HHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CH-hhHHHHHHHHH
Q 037409 278 AKCLFIEMMDNGVQPDVVTFN---AMINYNCKDGKMDKVNRLLELMIQRG-------VNP------DT-VTYNSLMDGFC 340 (603)
Q Consensus 278 A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~ 340 (603)
+. +.+ .....| ..+|. ...-.+...|++.+|+++++...+.+ -.. +. .+-..+.-++.
T Consensus 161 ~~-~~q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ-LLQ---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH-HHH---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 122 222222 22333 33445678899999999999883221 110 11 11233455667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCcch----HHHHHHHHHhcCCh-H-HHHHHHHHHHhCCC----------CCCHhhH-H
Q 037409 341 LVGRISRARELFVSMVSKGCRHDVYS----YNILINANCKDQKV-E-DAVCLYREMLSERI----------RPSVITY-N 403 (603)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~-~-~A~~~~~~~~~~~~----------~~~~~~~-~ 403 (603)
..|+..+|.+++..+++... +|... -|.|+.+ ....++ + .++..++....... ....... +
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998853 34322 2333322 111111 1 22223322211100 0001111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 037409 404 TLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK--NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCK 481 (603)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (603)
.++..| .+..+.+.++...... ..|.. .+..++..+.+ ......+..++...-+........+...++.....
T Consensus 314 ~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 314 ALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 222222 2444455554444332 22333 33344443322 22467777777776664433345677778888899
Q ss_pred CCChhHHHHHHH--------HHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHH
Q 037409 482 MGRLKTACKLFH--------RLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK--NCVPS----EVTFCTLLR 547 (603)
Q Consensus 482 ~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~ 547 (603)
.|+++.|.+++. .+.+.+.. +.+...+...+.+.++.+.|..++.+++.. ...+. ..++..++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 999999999999 55554333 345566667777878777788887777643 00111 223444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.-.+.|+-++|...++++++.++ ++..+...++-+|.+.. .+.|..+-+++
T Consensus 467 f~lr~G~~~ea~s~leel~k~n~--~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFNP--NDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhCC--chHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 55678999999999999998666 59999999999998765 66666655544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-09 Score=103.43 Aligned_cols=186 Identities=11% Similarity=-0.041 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVL 139 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 139 (603)
.+...|...|-+++..++. -...|..|+..|....+...|.+.|+.+.+.+ ..|..........|.+..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4567788888888887655 45678888888888888888888888888876 667778888888888888888888874
Q ss_pred HHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 140 GRILRSCFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
-...+.... .-...|-...-.|...++...|+.-|+...+.. +.|...|..++.+|.+.|++..|+++|.++...+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 333222110 011223334455667788888888888877654 5577788888888888888888888888887642
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 037409 219 ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
|.+...---.....+..|.+.+|+..+.....
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222222233345667888888888776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-09 Score=101.16 Aligned_cols=239 Identities=12% Similarity=0.013 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH-------
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNT------- 404 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------- 404 (603)
...+.++..+..+++.+++.+....... .+..-++....+|...|.+.++...-....+.|.. ....|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777778888999999999888874 45566677777888888888877777666665432 2222332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 484 (603)
+..+|.+.++++.++..|.+.......|+.. .+....+++....+...-.+... ..-.-.-+..+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3335666788888999988876554443321 22334444544444433222111 2222223677889999
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
+..|.+.+.+++..+|. |...|.....+|.+.|.+..|+.-.+..++.+ ++....|..=+.++....+|++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 89999999999999999999999999999985 55566777778888888999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHc
Q 037409 565 MAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 565 ~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
.++.++. +.+....+.+++..
T Consensus 452 ale~dp~--~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 452 ALELDPS--NAEAIDGYRRCVEA 472 (539)
T ss_pred HHhcCch--hHHHHHHHHHHHHH
Confidence 9987754 66776666666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-10 Score=104.10 Aligned_cols=218 Identities=13% Similarity=-0.006 Sum_probs=159.5
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 60 ITSNEAVYFFDCMIKMK---PSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
+..+.++..+.+++... |......|..++..+.+.|++++|...|+++++.. |.++..++.++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46678889999998643 33335678889999999999999999999999886 667889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 037409 137 VVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (603)
..|+++++..+. +..+|..+...+...|++++|.+.|++..+. .|+..............++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999988654 5678888888999999999999999999876 4443322222233445778999999997766542
Q ss_pred CCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 217 GAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR---NI---NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG 289 (603)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 289 (603)
+++...+ .......|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++....+
T Consensus 196 ----~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 ----DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ----CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 2223345665544 344444321 11 1123578888888888888888888888888765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-09 Score=104.69 Aligned_cols=465 Identities=13% Similarity=0.105 Sum_probs=276.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 037409 102 SLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 181 (603)
.++-.+...|+.|+..+|..++..|+..|+.+.|- +|..|.-.....+..+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777899999999999999999999999998 9998888877778889999999888888876665
Q ss_pred CCCcHHHHHHHHHHHHhcCChHH---HHHHHHHHHHhcC---Cc------------cCCChhhHHHHHHHHHhcCChhHH
Q 037409 182 CDPNVVTFNTLINGLCRTRNTLV---ALKLFEEMVNEFG---AI------------CKPDVVTYNSIIDGLCKDGFVDKA 243 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~---~~------------~~~~~~~~~~l~~~~~~~g~~~~a 243 (603)
.|...+|..|..+|.+.||... ..+.++.+..... .+ .+.....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6788899999999999998654 3333333332210 00 000001112233334445556666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCC-VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ 322 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 322 (603)
++++..+...... .+... +++-+.. ...+++-....+...+ .|++.++..++..-...|+++.|..++..|.+
T Consensus 159 lkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 6666555433111 11111 2333322 2334444444444443 58999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 037409 323 RGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITY 402 (603)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 402 (603)
.|.+.+..-|-.|+-+ .++...++.++.-|...|+.|+..|+...+..+.++|....+.. + .+....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~-sq~~hg~ 300 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------G-SQLAHGF 300 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------c-cchhhhh
Confidence 9998888766666544 78888899999999999999999999888877777554222211 1 1222223
Q ss_pred HHHHHHHHhcC-----CH-----HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCh
Q 037409 403 NTLLSGLFQVG-----NL-----GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---ELRI 469 (603)
Q Consensus 403 ~~l~~~~~~~~-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 469 (603)
++-...-.-.| +. .-....+++..-.|+......|.... -...+|.-++..++-..+..... +.++
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchH
Confidence 33332222223 11 11122222222223333333343332 23346666666666655543111 2233
Q ss_pred HHHHHHHHHHHhCC----------------------ChhHHHHHHHHHhhC-C---------------CCC-------CH
Q 037409 470 ETYNCLINGLCKMG----------------------RLKTACKLFHRLQHK-G---------------PIP-------DV 504 (603)
Q Consensus 470 ~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~-~---------------~~p-------~~ 504 (603)
..+..++.-|.+.- +..+..+++...... + ..| -.
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 44444444433221 111222222211100 0 000 01
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHH
Q 037409 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK--LVVSDLSLSSKVV 582 (603)
Q Consensus 505 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~ 582 (603)
..-+.++..++..-+..+++..-++....-+ + ..|..|+.-+....+.+.|..+..+..... .. -+...+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~-Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIH-LDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhh-cccHhHHHHH
Confidence 1123444445555555555544444443322 1 567788888888888888888888876422 22 3455678888
Q ss_pred HHHHcCCcHHHHHHHHHhh
Q 037409 583 DLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 583 ~~~~~~g~~~eA~~~~~~~ 601 (603)
+.+.+-+...++..+++.+
T Consensus 536 dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhh
Confidence 9999999999998888764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-08 Score=95.89 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
.=.++|.++++.+.+.+ +.+..+|..-...|.+.|++-.|++.+++
T Consensus 471 dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 35588999999999876 66788899999999999999888877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=110.79 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-hHHHHHHHHHHHhCCChhHHHHHHHHHhhC---CCCCC--
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNC-----K-CELR-IETYNCLINGLCKMGRLKTACKLFHRLQHK---GPIPD-- 503 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~-- 503 (603)
++..|..+|.+.|++++|...++++.+. + ..+. ...++.++..|...+++++|..++++..+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 3444444555555555555555444321 0 0111 123445555555666666666666554431 11111
Q ss_pred --HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC
Q 037409 504 --VVTCSTMIHWLCKEGQMDKANDLLLDMEAK-----N-CVP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMA----AEKL 570 (603)
Q Consensus 504 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~ 570 (603)
..+++.|...|...|++++|.+++++++.. | ..+ ....+..++..|.+.+++++|.++|.+.. ..|+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 345666666666666666666666666543 1 011 13345566666666666666666555543 2233
Q ss_pred CCCC-HHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 571 VVSD-LSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 571 ~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
..|+ ..+|..|+..|.+.|++++|.++.+++
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3222 345666666666666666666666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-09 Score=90.42 Aligned_cols=198 Identities=13% Similarity=-0.015 Sum_probs=150.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
..|.-.|.+.|+...|..-+++.++.++. +..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 34556677888888888888888776433 5667777888888888888888888888776543 556777777778888
Q ss_pred CCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCK-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDL 526 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 526 (603)
|.+++|...|++..... ......+|.+++-+..+.|+++.|...|++.++.++. ...+...+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888877632 2334567888888888888888888888888887665 556677788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 527 LLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++.....+ .++...+...++.--..|+.+.+.++=.++.+.-
T Consensus 196 ~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 196 LERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888776 4788887777888888888887777766666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-10 Score=91.16 Aligned_cols=195 Identities=15% Similarity=0.037 Sum_probs=167.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLC 480 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 480 (603)
+...+.-.|...|+...|..-+++.++.++. +..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|+....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3455667899999999999999999987543 66788888899999999999999999999877 678899999999999
Q ss_pred hCCChhHHHHHHHHHhhCCC-CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHKGP-IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
..|++++|...|++....-. .-...+|..++.+..+.|+.+.|...|++.++.. +..+.....+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999997521 1135689999999999999999999999999985 556778889999999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 560 VLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.++++....+. ++.+.....+.+--..|+-+.|-++=.+
T Consensus 194 ~~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 194 LYLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999987765 5888888888888899998888766443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-07 Score=87.26 Aligned_cols=230 Identities=16% Similarity=0.103 Sum_probs=153.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcC
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN--------GLFPDLFVLNLLINCLCKMG 130 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g 130 (603)
.|+.|.|.+...-+ .+...|..+.+.+.+..+.+-|.-.+-.|... ....+..+-..+.......|
T Consensus 741 iG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred eccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 58889888877765 25678999999999999888887666554321 11111133444555567889
Q ss_pred CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 037409 131 ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFE 210 (603)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 210 (603)
-.++|..+|.+..+. ..|=..|...|.+++|.++-+.-.+.. =..||.....-+-..++.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999887654 234455677899999999877644322 12466666777777889999999887
Q ss_pred HHH----------HhcCC------ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 211 EMV----------NEFGA------ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 211 ~~~----------~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
+.. ..+.+ ....|...|.--...+...|+.+.|+.+|...++ |.++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 642 11100 0011233333344445556777777777766554 5566677777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (603)
.++|-.+-++- -|......+.+.|-..|++.+|...|.+..
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88887776553 266677788888888888888888887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-09 Score=98.58 Aligned_cols=237 Identities=12% Similarity=-0.046 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHcC-CCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 344 RISRARELFVSMVSKG-CRH--DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALK 420 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 420 (603)
..+.++..+.+++... ..| ....|..+...|...|+.++|...|++.++..+ .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555431 111 123455566666777777777777777766533 256667777777777777777777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 421 LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
.|+...+..+. +...+..+..++...|++++|.+.++...+.. +.+.. .......+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777664333 34556666666777777777777777776644 22321 1111222334566777777776554321
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK---NC---VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD 574 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 574 (603)
.|+ .|. ........|+..++ +.++.+.+. .. +.....|..++..+.+.|++++|+..|+++++.++. ..
T Consensus 196 ~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~ 270 (296)
T PRK11189 196 DKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NF 270 (296)
T ss_pred Ccc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hH
Confidence 122 122 12233344555443 234444321 00 112346777777778888888888888887776553 34
Q ss_pred HHHHHHHHHHHHcCCc
Q 037409 575 LSLSSKVVDLLSKDKK 590 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~ 590 (603)
.++...++......++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555554444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-08 Score=97.71 Aligned_cols=478 Identities=12% Similarity=-0.024 Sum_probs=285.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFK 175 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 175 (603)
+...|+..|-+.++.+ +.-...|..++..|+..-+..+|.+.|+.+...+.. +...+......|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4677777777777665 334557888888888888888999999999888654 77788888999999999999988843
Q ss_pred HHHhcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 037409 176 KLNVFA-CDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRN 254 (603)
Q Consensus 176 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 254 (603)
...+.. ...-...|....-.+...++...|+..|+...+. .|.|...|..++.+|.++|++..|.++|.+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 332221 0011223455566677888999999999999886 4678889999999999999999999999888765
Q ss_pred CCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 037409 255 INPNVITYNS--LICGFCCVDDWKEAKCLFIEMMDNG------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ---- 322 (603)
Q Consensus 255 ~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 322 (603)
.|+ ..|.. ....-+..|.+.+|+..+....... ..--..++..+...+.-.|-..++...++..++
T Consensus 626 -rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 -RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred -CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 222 22322 2334457788999998888776431 011122333333333334433344444433322
Q ss_pred ---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh---H---HHHHHHHHHHhC
Q 037409 323 ---RGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV---E---DAVCLYREMLSE 393 (603)
Q Consensus 323 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~ 393 (603)
+....+...|..+..+ ..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-+.
T Consensus 704 ~l~h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls- 770 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS- 770 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH-
Confidence 2111122222222222 22222221 00 11111111111111111111 1 11111111111
Q ss_pred CCCCCHhhHHHHHHHHHh----c----CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037409 394 RIRPSVITYNTLLSGLFQ----V----GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC 465 (603)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 465 (603)
...+..+|..++..|.+ . .+...|+..+++..+.. ..+..+|+.|.-. ...|++.-+.-.|-.-....
T Consensus 771 -l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se- 846 (1238)
T KOG1127|consen 771 -LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE- 846 (1238)
T ss_pred -HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-
Confidence 11234445444444333 1 22346777777766543 2255666666544 55577777766665544433
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH--HH--CCCCCCHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM--EA--KNCVPSEVT 541 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~ 541 (603)
+....+|.++.-.+.+..+++-|...|...+...|. |...|-.........|+.-++..+|..- .. .|--++..-
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 556778888888888999999999999999887665 7777777777777888888888877662 22 233445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----------HCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMA----------AEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|.........+|+.++-+...+++. ...+ .....|...+..+-+.+.+++|.+...+++
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p--~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP--QLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc--chhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5555555667777766555444433 3333 466778888888888888888888877653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=105.25 Aligned_cols=241 Identities=18% Similarity=0.116 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhc-----C-CC
Q 037409 117 FVLNLLINCLCKMGITSGAFVVLGRILRS-----C-FTPNTV-TFNFLINGLCAEGRIMEAARLFKKLNVF-----A-CD 183 (603)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 183 (603)
.+...+...|...|+++.|..++++.++. | ..|.+. ..+.+...|...+++.+|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666777777777777777666554 1 112222 2334666777777777777777776432 2 11
Q ss_pred Cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC---ccCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHhhC---CC
Q 037409 184 PN-VVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA---ICKPDV-VTYNSIIDGLCKDGFVDKAKELLLQMKDR---NI 255 (603)
Q Consensus 184 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 255 (603)
|. ..+++.|..+|.+.|++++|..+++.+.+.... ...+.+ ..++.++..+...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 234666667777777777777776665543211 122333 23556677777777777777777655432 11
Q ss_pred CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 037409 256 NP----NVITYNSLICGFCCVDDWKEAKCLFIEMMDNG-------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ-- 322 (603)
Q Consensus 256 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 322 (603)
.+ -..+++.|...|...|++++|.+++++.+... ..-....++.+...|.+.+.+.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 23567778888888888888888887766431 111234567777777777777777777766543
Q ss_pred --CCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 323 --RGV--NPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 323 --~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
.|+ +-...+|..|...|...|+++.|+++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 22346678888888888888888888877764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-06 Score=87.77 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 306 KDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
+.++..--..+++..+..|.. |+.+++.+...|..+++
T Consensus 850 kRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred hhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 334444445555666666655 77777777777765543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-08 Score=97.26 Aligned_cols=195 Identities=10% Similarity=-0.034 Sum_probs=101.0
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSP-G-MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
..+.+....|+.++|...+....+..+.. + ..........+...|++++|...++++.+.. |.+...+.. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHH
Confidence 33333334456666666666665544321 1 1222333444566777777777777776653 334433332 222222
Q ss_pred c----CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 037409 129 M----GITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLV 204 (603)
Q Consensus 129 ~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (603)
. +..+.+.+.+...... ..........+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred hcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 2 3333333333321111 11122233344556666777777777777766653 3344556666666777777777
Q ss_pred HHHHHHHHHHhcCCccCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 205 ALKLFEEMVNEFGAICKPDV--VTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 205 A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
|...+++....... .++. ..|..+...+...|++++|..++++..
T Consensus 167 A~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 167 GIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777766654210 1121 234456666666777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-07 Score=89.55 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|.++.|+..|-++. .....+.+.....+|.+|+.+++.+..+. .-...|..+...|...|+++.|.++
T Consensus 719 ~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 719 IGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHH
Confidence 456666666665541 12334556667788999999999887663 3445677788899999999999998
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEE 211 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (603)
|-+. ..++-.|.+|.+.|++++|.++-++... .....+.|.+-..-+-..|++.+|.++|-.
T Consensus 788 f~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 788 FTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 8643 3456678899999999999999887653 233445565555666667777776666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-08 Score=85.23 Aligned_cols=290 Identities=15% Similarity=0.100 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHH-HHHHHHh
Q 037409 85 TILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNF-LINGLCA 163 (603)
Q Consensus 85 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 163 (603)
.+++..+.+..++.+|++++..-.+.. +.+...++.+.-+|....++..|...++++....+ ...-|.. -...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHHHH
Confidence 344555556666666666666655553 33455566666666666666666666666655422 2222221 2344455
Q ss_pred cCCHhHHHHHHHHHHhcCCCCcHHHHHHHH--HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 164 EGRIMEAARLFKKLNVFACDPNVVTFNTLI--NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 164 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
.+.+.+|+++...|... ++...-..-+ ......+++..+..+.++.... .+..+.+.......+.|+++
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e------n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE------NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC------CccchhccchheeeccccHH
Confidence 66666666666665421 1111111111 2223455666666665555432 23334444444555666666
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------C---------------
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP-------------D--------------- 293 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~--------------- 293 (603)
.|.+-|+...+-+--.....|+..+. ..+.+++..|++...+++++|++. |
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 66666666655432223344444333 335566666666666666654321 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQR-GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILIN 372 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (603)
+..+|.-...+.+.++++.|.+.+-.|..+ ....|+.|...+.-. -..+++....+-+.-++..+. ....+|..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 112233334455677777777777666433 223455554443321 123445555555666665532 34567777777
Q ss_pred HHHhcCChHHHHHHHHH
Q 037409 373 ANCKDQKVEDAVCLYRE 389 (603)
Q Consensus 373 ~~~~~~~~~~A~~~~~~ 389 (603)
.||+..-++.|..++.+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 78887777777776654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-08 Score=92.91 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 260 ITYNSLICGFCCVDDWKEAKCLFIEMMDNGV-QPDVV-TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMD 337 (603)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
..|..+...+...|+.+.+...+....+... .++.. ........+...|++++|...+++..+..+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 4455555555556666665555555443321 11211 1112223345566666676666666655322 2222221 11
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 338 GFCL----VGRISRARELFVSMVSKGCRHD-VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 338 ~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+.. .+..+.+.+.+.... ...|+ ......+...+...|++++|...+++..+..+. +...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 1111 233333333333211 11111 122233344555566666666666666554322 344455555556666
Q ss_pred CCHHHHHHHHHHHhhCCCC-CCH--HhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 413 GNLGDALKLIDKMQLNDVV-PDS--FTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
|++++|...+++....... |+. ..+..+...+...|++++|..+++++.
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666655443211 111 123344555556666666666666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-06 Score=87.43 Aligned_cols=187 Identities=14% Similarity=0.237 Sum_probs=124.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 374 NCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 374 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
....+-+++|..+|++.- .+....+.++. ..+..+.|.+.-++.. .+..|..+..+-.+.|...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334445566666665432 13333333333 2344555555444332 456788888888888888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+-|-+ ..|+..|..+++...+.|.+++-.+++...++..-+|... ..|+.+|++.++..+-++++.
T Consensus 1124 ieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1124 IESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred HHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----
Confidence 776533 3467788889999999999999999888888765555443 477888888888777555432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 534 NCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 534 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
-|+......++.-|...|.++.|.-+|... .-|..++..+...|.++.|.+.-+
T Consensus 1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred --CCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 478888888888888888888777666432 335566666666677766665443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-06 Score=93.77 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAK----NCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+..++...|++++|...++++... |...+ ..+...++.++.+.|+.++|...+.++++
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444445555555555444432 11111 12233444444555555555555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-08 Score=84.29 Aligned_cols=351 Identities=15% Similarity=0.135 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHH-HHHHHH
Q 037409 119 LNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNT-LINGLC 197 (603)
Q Consensus 119 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 197 (603)
+.+++..+.+..+++.|++++..-.+..++ +......|...|....++..|-..++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 455666667777788888887776665332 5556667777777788888888888887664 555555443 345666
Q ss_pred hcCChHHHHHHHHHHHHhcCCccCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 037409 198 RTRNTLVALKLFEEMVNEFGAICKPDV--VTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW 275 (603)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (603)
+.+.+..|+++...+... ++. .+...-.......+++..+..+.++....| +..+.+.......+.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 778888888887777542 111 111112223345677777777777766432 445555556666678888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCCHHHHHHH
Q 037409 276 KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVT----YNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~ 351 (603)
+.|.+-|....+-+--.....|+..+ +..+.++++.|.+...+++++|++..+.. ....+++ ...|+ -..+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHH
Confidence 88888887776653222344455443 34456778888888888877765422211 0001110 00011 0000
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER-IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV 430 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (603)
.... -+..+|.-...+.+.++.+.|.+.+.+|..+. ...|++|...+.-. ...+++.+..+-+.-+....+
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0000 11223334445667788888888777775432 23355665554322 223445555555555555444
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHh-CCChhHHHHHHHHHh
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCE-LRIETYNCLINGLCK-MGRLKTACKLFHRLQ 496 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 496 (603)
- ...||..++-.||+..-++.|-.++.+-...... .+...|+ |+.++.. .-..++|.+-++.+.
T Consensus 308 f-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 308 F-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 3 3457777777888888888887776543221111 1222332 3333333 345666666555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-07 Score=86.85 Aligned_cols=429 Identities=15% Similarity=0.103 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--------------------CC-CCCCHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNS--------------------NG-LFPDLF 117 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~-~~~~~~ 117 (603)
.|+++.|..+++.. ..+|. ....|..+.......|+.--|.+.|..+-. -| -..+.+
T Consensus 457 ~~df~ra~afles~-~~~~d-a~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fy 534 (1636)
T KOG3616|consen 457 DGDFDRATAFLESL-EMGPD-AEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFY 534 (1636)
T ss_pred cCchHHHHHHHHhh-ccCcc-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHH
Confidence 58899998888764 33332 344588777777777776666665553311 11 011111
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH-HHHHHHHHHH
Q 037409 118 VLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV-VTFNTLINGL 196 (603)
Q Consensus 118 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 196 (603)
-...++. .-..++.+|..+|-+- | .-...+.+|....++++|+.+-+.. | .|.. ..-.+.++++
T Consensus 535 kvra~la--il~kkfk~ae~ifleq-------n--~te~aigmy~~lhkwde~i~lae~~---~-~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 535 KVRAMLA--ILEKKFKEAEMIFLEQ-------N--ATEEAIGMYQELHKWDEAIALAEAK---G-HPALEKLKRSYLQAL 599 (1636)
T ss_pred HHHHHHH--HHHhhhhHHHHHHHhc-------c--cHHHHHHHHHHHHhHHHHHHHHHhc---C-ChHHHHHHHHHHHHH
Confidence 1111221 1122444554444221 0 1122345555566666666654432 2 2322 2233455566
Q ss_pred HhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 037409 197 CRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWK 276 (603)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (603)
...|+-++|-++- .. +..+ .+.|..|.+.|.+..|.+....-.. ...|......+..++.+..-++
T Consensus 600 ~dt~qd~ka~elk----~s-------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 600 MDTGQDEKAAELK----ES-------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HhcCchhhhhhhc----cc-------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHH
Confidence 6666666554331 11 1111 2456777888877776654321111 1224444444445555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------C--------CHhhHH
Q 037409 277 EAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN---------------P--------DTVTYN 333 (603)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~--------~~~~~~ 333 (603)
+|-++|+++.+ | ...+..|-+-.-+.+|.++-+-.....+. . ......
T Consensus 666 kagdlfeki~d----~-----dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 666 KAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred hhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 55555555432 1 11122222222233333332221100000 0 000011
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG 413 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (603)
..+.+.....+|.+|+.+++.+..+. .-..-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 12223333444555555555444431 122223444445555555555555554321 1333444555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFH 493 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (603)
+|+.|.++-.+.. |+......|..-.+-+-.+|++.+|.++|-.+. .|+. .|..|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 5555555544332 122223333333344445555555555543221 2221 2334555555555555444
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 494 RLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL 561 (603)
Q Consensus 494 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (603)
+-... .-..|...+..-+...|+...|...|-++.+ |...++.|-.++.|++|.++
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 43221 1122344445555555666665555544322 33444455555555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-06 Score=76.19 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=38.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (603)
..|+...|++....+++.. +.|...+..-..+|...|++..|+.-++...+.... +..++..+-..+...|+.+.++.
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHH
Confidence 3444444444444444432 234444444444455555555554444444333222 22333333444444555555555
Q ss_pred HHHHHHHc
Q 037409 351 LFVSMVSK 358 (603)
Q Consensus 351 ~~~~~~~~ 358 (603)
..++.++.
T Consensus 245 ~iRECLKl 252 (504)
T KOG0624|consen 245 EIRECLKL 252 (504)
T ss_pred HHHHHHcc
Confidence 55444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-06 Score=82.23 Aligned_cols=495 Identities=14% Similarity=0.098 Sum_probs=227.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.+++..|.+..++.+...|+ ...+-..-.-.+.+.|+.++|..+++.....+ ..|..+...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45667777777777776554 22222222223467777777776666665554 34667777777777777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCh---------HHHHHH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT-RNT---------LVALKL 208 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~---------~~A~~~ 208 (603)
|+++... .|+......+..+|.+.+.+.+-.++--++-+. ++.+...+=+++..+.+. ... .-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 7777766 344666666666677766655433333333221 122222222233333221 111 123444
Q ss_pred HHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 209 FEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELL-LQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
++.+.+..| .-.+..-.......+...|.+++|++++ ....+.-.+-+...-+.-+..+...++|.+..++-.++..
T Consensus 177 ~~~~l~~~g--k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 177 VQKLLEKKG--KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHhccCC--ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 444444321 1111222222333444556666666665 2232322222333334445555566666666666655555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 288 NGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.| +|. |...+.. +++-+......| ... .+...+..+...+..++..... ....|
T Consensus 255 k~--~Dd--y~~~~~s------------v~klLe~~~~~~-a~~------~~s~~~~l~~~~ek~~~~i~~~---~Rgp~ 308 (932)
T KOG2053|consen 255 KG--NDD--YKIYTDS------------VFKLLELLNKEP-AEA------AHSLSKSLDECIEKAQKNIGSK---SRGPY 308 (932)
T ss_pred hC--Ccc--hHHHHHH------------HHHHHHhccccc-chh------hhhhhhhHHHHHHHHHHhhccc---ccCcH
Confidence 53 121 2211111 111111111111 100 0111222333333333332221 11112
Q ss_pred HHHHHH---HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HH---hHHH
Q 037409 368 NILINA---NCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD--SF---TFAT 439 (603)
Q Consensus 368 ~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~---~~~~ 439 (603)
-+-+.+ +..-|+.+++...|-+-.. +...|..=+..|...=..+.-..++........... .. .+.+
T Consensus 309 LA~lel~kr~~~~gd~ee~~~~y~~kfg-----~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c 383 (932)
T KOG2053|consen 309 LARLELDKRYKLIGDSEEMLSYYFKKFG-----DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLC 383 (932)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHhC-----CCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 222222 2234666665544432211 111122222222222233333333333322110000 00 0111
Q ss_pred HHHHHHhCCC-----HHHHHHHHHHHH---HcC------CCCC---------hHHHHHHHHHHHhCCChh---HHHHHHH
Q 037409 440 YIDGLCKNGF-----VLEAVQVFQAIR---NCK------CELR---------IETYNCLINGLCKMGRLK---TACKLFH 493 (603)
Q Consensus 440 l~~~~~~~g~-----~~~a~~~~~~~~---~~~------~~~~---------~~~~~~l~~~~~~~g~~~---~A~~~~~ 493 (603)
.+..-...|. -+.-..++++.. ..| .-|+ ..+-+.|++.+.+.++.. +|+-+++
T Consensus 384 ~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE 463 (932)
T KOG2053|consen 384 VLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLE 463 (932)
T ss_pred HHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1111111221 122223332222 111 1112 123466778888887654 5666666
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 494 RLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS 573 (603)
Q Consensus 494 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 573 (603)
.-....+. |..+--.+++.|.-.|-+..|.++++.+--+++..|...+ .+...+...|++.-+...++...+.--. .
T Consensus 464 ~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkfy~~-~ 540 (932)
T KOG2053|consen 464 NGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKFYDS-S 540 (932)
T ss_pred HHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHHHHHHhh-h
Confidence 66665444 6666667888888889999999999988777666554443 2344566788898888888887653211 2
Q ss_pred CHHHHHHHHHHHHcCCcHHHHH
Q 037409 574 DLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
..++-..++.+ .+.|.+..-.
T Consensus 541 ~kE~~eyI~~A-Yr~g~ySkI~ 561 (932)
T KOG2053|consen 541 LKETPEYIALA-YRRGAYSKIP 561 (932)
T ss_pred hhhhHHHHHHH-HHcCchhhhH
Confidence 22333333333 3455555433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-08 Score=94.42 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=171.1
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
+|-.++.+-..|++.+|.-.|+.+...+|. ++.+|..|+.....+++-..|+..+++.++.+ |.+..++..|...|..
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN 365 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence 477777777789999999999999988876 88999999999999999999999999999887 7778888889999999
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHH---------HHHHhcCCHhHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHh
Q 037409 129 MGITSGAFVVLGRILRSCFTPNTVTFNFLI---------NGLCAEGRIMEAARLFKKLN-VFACDPNVVTFNTLINGLCR 198 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|.-..|...++.-+...++ ..|.... ..+.....+....++|-++. ..+..+|..+...|.-.|.-
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhHHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99888899988887665322 0000000 00111112233344444443 33334677788888888888
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN-VITYNSLICGFCCVDDWKE 277 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 277 (603)
.|++++|++.|+.++.. -|.|...||-|...++...+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++
T Consensus 443 s~efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred chHHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHH
Confidence 89999999999988886 3567788888888888888889999999888875 443 4566667777888888888
Q ss_pred HHHHHHHHHH
Q 037409 278 AKCLFIEMMD 287 (603)
Q Consensus 278 A~~~~~~~~~ 287 (603)
|.+.|-..+.
T Consensus 517 A~~hlL~AL~ 526 (579)
T KOG1125|consen 517 AVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHH
Confidence 8888776654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=74.56 Aligned_cols=47 Identities=45% Similarity=0.788 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYN 304 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (603)
|..+||+++.+|++.|++++|.++|++|.+.|++||..||+.++.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-07 Score=80.84 Aligned_cols=199 Identities=13% Similarity=0.042 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh-hHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTV-TFNFLI 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 158 (603)
++.-..-+...+..+|++.+|+.-|..+++.+ +.+-.++..-...|...|+-..|+.=+.++++. +||-. +-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445567778888899999999988888653 333335555667888889888888888888887 44422 222234
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHH----HH------------HHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVV----TF------------NTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
..+.+.|.+++|..-|+.+... .|+.. .+ ...+..+...|+...|++....+++. .+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~W 187 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----QPW 187 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----Ccc
Confidence 5677889999999999888876 33211 11 12233445578888888888888876 466
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
|...|..-..+|...|++..|+.-++...+... .+...+.-+-..+...|+.+.++...++.++.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 777777788888888888888877776665532 25566666777777888888888888888775
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.7e-11 Score=74.86 Aligned_cols=50 Identities=52% Similarity=0.927 Sum_probs=41.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 037409 222 PDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC 271 (603)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (603)
||..+|++++.+|++.|++++|.++|++|.+.|++||..||+.+++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-06 Score=80.48 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 519 QMDKANDLLLDMEAKNCVPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 519 ~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..+.++-...|++....|+ ...|..|+..+....+|..|-+.++++.++-+.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 55556666666666533332 456888899999999999999999999876554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-09 Score=95.20 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=129.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 305 CKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34555555554443 111111112233344555666666655433 2222222 344444433333333223444444
Q ss_pred HHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 385 CLYREMLSERIRP-SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 385 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
.-+++.......+ +..........+...|++++|+++++.. .+.......++.+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444433332221 2222222233455667777777766542 24455556677777777777777777777654
Q ss_pred CCCCChHHHHHHHHHHHh----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 464 KCELRIETYNCLINGLCK----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
+ +..+...++.++.. .+.+.+|..+|+++.+. ..+++.+++.++.++...|++++|.++++++++.+ +.++
T Consensus 161 ~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 3 22333333333322 23577788888777665 34567777777777777888888888777777654 4456
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCC
Q 037409 540 VTFCTLLRGFVQNNKK-SKVVVLLHKMAAEKL 570 (603)
Q Consensus 540 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 570 (603)
.++..++.+....|+. +.+.+++.++....+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 6777777777777776 556667777665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-06 Score=77.09 Aligned_cols=433 Identities=13% Similarity=0.121 Sum_probs=233.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 037409 71 CMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPN 150 (603)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 150 (603)
+-++.+|. |+.+|..|++-+..+ ..+++...++++... ++..+..|..-+....+..+++....+|.+.+..- .+
T Consensus 11 ~rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 34455555 899999999987666 999999999999876 36678899999999999999999999999988763 35
Q ss_pred HhhHHHHHHHHHh-cCCHh----HHHHHHHHH-HhcCCCCc-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHH
Q 037409 151 TVTFNFLINGLCA-EGRIM----EAARLFKKL-NVFACDPN-VVTFNTLINGLC---------RTRNTLVALKLFEEMVN 214 (603)
Q Consensus 151 ~~~~~~l~~~~~~-~g~~~----~A~~~~~~~-~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 214 (603)
...|...+..-.+ .|+.. .-.+.|+-. .+.|+++- -..|+..+..+- .+.+.+...++|++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 7777777664433 22222 223344433 33444432 234555544332 23355667777777765
Q ss_pred hcCCccCCCh-hhHH------HHHHHH-------HhcCChhHHHHHHHHHhh--CCCCCChhhHHHHHHHHHhcCCHHH-
Q 037409 215 EFGAICKPDV-VTYN------SIIDGL-------CKDGFVDKAKELLLQMKD--RNINPNVITYNSLICGFCCVDDWKE- 277 (603)
Q Consensus 215 ~~~~~~~~~~-~~~~------~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~- 277 (603)
.. -.+. ..|+ .-|... -+...+..|.++++++.. +|......+ .-..|..++
T Consensus 166 tP----m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~ 234 (656)
T KOG1914|consen 166 TP----MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEI 234 (656)
T ss_pred Cc----cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHH
Confidence 31 1111 1111 111111 112234445555554432 121111111 001111111
Q ss_pred -HHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhH-----HHHHHHHHhcCC-
Q 037409 278 -AKCLFIEMMD----NGVQ-PDVVTFNAMINYNCKDGKMDKVNRLLELMI-QRGVNPDTVTY-----NSLMDGFCLVGR- 344 (603)
Q Consensus 278 -A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~-----~~l~~~~~~~~~- 344 (603)
..+++...++ .++. .+..... ....-.+++.+ -.+..|+.... ....+.+...|+
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~ 302 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDV 302 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccc
Confidence 1122222211 1111 0000000 00011111111 11111111100 000111222222
Q ss_pred ------HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 345 ------ISRARELFVSMVSKGCRHDVYSYNILINANCKD---QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 345 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
.+++..+++..+..-...+...|..+...--.. ...+....+++++.......-..+|..+++.-.+..-.
T Consensus 303 ~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 303 PDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGL 382 (656)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhH
Confidence 345555555554432222333333332211111 12555666666666543333345677777777777888
Q ss_pred HHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHR 494 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (603)
..|..+|.+..+.+..+ +....+.++..+| .++..-|.++|+--++.. ..++.--...+..+...++-..+..+|++
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 88888888888776666 5556666666554 477888888888765532 44556666777777888888888888888
Q ss_pred HhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 495 LQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 495 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
....+..|+ ..+|..++.--..-|+...+.++-+++...
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 887744443 467888888777788888888777666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-07 Score=86.85 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=113.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCH--HHH
Q 037409 377 DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG-NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFV--LEA 453 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a 453 (603)
.+..++|+.+..+++...+. +..+|+....++...| ++++++..++++.+.+++ +..+|......+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 44555666666666554222 3344444444444555 456666666666554433 334444444344444442 455
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc---CCh----hHHHHH
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE---GQM----DKANDL 526 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~ 526 (603)
..+++.+.+.+ +-+..+|+....++.+.|++++++..++++++.++. |...|+....++.+. |.. ++.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66666666554 446666666666666666677777777777666555 556666665555443 222 345556
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 527 LLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
..+++... +.|...|..+...+.. .+...+|.+.+.+..+.++. ++.....|+++|..
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~--s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN--HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC--cHHHHHHHHHHHHh
Confidence 65666654 4455666666666655 23345566666665554433 55666666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=94.63 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=168.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037409 339 FCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDA 418 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 418 (603)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++.++..+. +......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 445666666666666666653 234566666666666666666666666666665332 555566666666666666667
Q ss_pred HHHHHHHhhCCCCC--------CHHhHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChHHHHHHHHHHHhCCChhHHH
Q 037409 419 LKLIDKMQLNDVVP--------DSFTFATYIDGLCKNGFVLEAVQVFQAI-RNCKCELRIETYNCLINGLCKMGRLKTAC 489 (603)
Q Consensus 419 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 489 (603)
...++.-+...++- +...-.. ........+....++|-++ ...+..+|+.+...|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 76666654432110 0000000 0111111223334444443 34454578889999999999999999999
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 490 KLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 490 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
..|+.++...|. |..+||.|+..++...+.++|+..|.++++. .|. ..+...|+-.|+..|.+++|.+.+-.++..
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999997666 7889999999999999999999999999996 565 456788899999999999999988887632
Q ss_pred C--------CCCCCHHHHHHHHHHHHcCCcHHHHHHH
Q 037409 569 K--------LVVSDLSLSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 569 ~--------~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 597 (603)
. ...++..+|..|-.++...++.+-+...
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1112346788888888888887755443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-06 Score=96.00 Aligned_cols=336 Identities=10% Similarity=-0.036 Sum_probs=174.0
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC------CCC--hhhHHHHHH
Q 037409 196 LCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI------NPN--VITYNSLIC 267 (603)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 267 (603)
....|+++.+..+++.+.... ...+..........+...|+++++...+......-- .+. ......+..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~---~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEV---LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHH---HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 334556655555555442211 111222233344455567777777777766644310 011 111122234
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHhhHHHHHHH
Q 037409 268 GFCCVDDWKEAKCLFIEMMDNGVQPDV----VTFNAMINYNCKDGKMDKVNRLLELMIQRGVN-----PDTVTYNSLMDG 338 (603)
Q Consensus 268 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~ 338 (603)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+++....... ....+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 455677777777777776653111111 23344555566677777777777776542110 111233445556
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHhhHHHHHH
Q 037409 339 FCLVGRISRARELFVSMVSK----GCRH---DVYSYNILINANCKDQKVEDAVCLYREMLSER--IRP--SVITYNTLLS 407 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~ 407 (603)
+...|+++.|...+++.... +... ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 66777777777777766543 1110 11123334445566677777777777654421 111 1223334455
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC--CCCCHH--hH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHH
Q 037409 408 GLFQVGNLGDALKLIDKMQLND--VVPDSF--TF--ATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---IETYNCLING 478 (603)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 478 (603)
.+...|++++|...+....... ...... .. ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 5667777777777777664321 110000 00 0112333446777777777655443111111 1113455666
Q ss_pred HHhCCChhHHHHHHHHHhhC----CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 479 LCKMGRLKTACKLFHRLQHK----GPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
+...|+.++|...+++.... +..+ ...++..+..++...|+.++|...+.++++..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777776652 2111 12345556666777788888888888887764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.9e-09 Score=93.07 Aligned_cols=248 Identities=12% Similarity=0.030 Sum_probs=164.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 037409 337 DGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (603)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++. ++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 33456788888886555 2222212223445566788888998776553 33333 3566666666665555445666
Q ss_pred HHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
.++.-+++.......+ +..........+...|++++|++++... .+.+.....+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666654433332 3333333334566789999999887542 46778888899999999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHHH--Hc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 496 QHKGPIPDVVTCSTMIHWLC--KE--GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 496 ~~~~~~p~~~~~~~l~~~~~--~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+. ..|. +...++.++. .. +++.+|..+|+++.+. .++++.+++.++.++...|++++|.++++++.+.++.
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 985 3343 3333444333 23 3799999999998876 4788999999999999999999999999999877665
Q ss_pred CCCHHHHHHHHHHHHcCCcH-HHHHHHHHhh
Q 037409 572 VSDLSLSSKVVDLLSKDKKY-RECLNQFRHL 601 (603)
Q Consensus 572 ~~~~~~~~~l~~~~~~~g~~-~eA~~~~~~~ 601 (603)
++.+...++-+....|+. +.+.++++++
T Consensus 234 --~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 234 --DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp --HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888899888888888 5566676654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=91.93 Aligned_cols=239 Identities=14% Similarity=0.045 Sum_probs=188.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 037409 326 NPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL 405 (603)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 405 (603)
+|-...-..+...+.+.|-...|..+++++. .|...+.+|+..|+..+|..+..+..+ .+|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444455667778888999999999988764 466788899999999999999888777 46788889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88888888889999988875432 11122222334789999999999888766 66788999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
+.|.+.|.......|. +...||.+..+|.+.|+..+|...++++++.+ ..+...|....-...+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999987665 78899999999999999999999999999987 667778888888889999999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHH
Q 037409 566 AAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~~~ 585 (603)
........+.++...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 75433223555554444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-08 Score=93.03 Aligned_cols=217 Identities=11% Similarity=0.075 Sum_probs=179.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG 443 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (603)
...-..+...+.+.|-...|+.+|+++.. |...+.+|...|+..+|..+..+..+ -+|++..|..+++.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 33445677889999999999999987643 67788899999999999999988877 36788899999988
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++- -..+|-.++.+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHH
Confidence 87777788998888765432 1112222233478999999999999887554 678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 524 NDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.|....... |.+...|+.+..+|.+.|+..+|...++++.+.+.. +..++....-...+.|.+++|.+.+++++
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999864 556788999999999999999999999999998865 66777777777899999999999999875
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-08 Score=87.40 Aligned_cols=184 Identities=9% Similarity=-0.017 Sum_probs=108.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChH---HH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV-PD-SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE---TY 472 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~ 472 (603)
....+..+...+...|++++|...++++....+. |. ...+..+..++...|++++|...++++.+.. +.+.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 3445555566666677777777777766554321 11 1344555666666777777777777766543 22222 34
Q ss_pred HHHHHHHHhC--------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037409 473 NCLINGLCKM--------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCT 544 (603)
Q Consensus 473 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 544 (603)
..+..++... |+.++|.+.++++.+..+. +...+..+....... . .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~----~-------~~-------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLR----N-------RL-------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHH----H-------HH-------HHHHHH
Confidence 4445555443 5566666666666665333 222222221110000 0 00 001125
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 545 LLRGFVQNNKKSKVVVLLHKMAAEKLV-VSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
++..+.+.|++++|...++++++..+. |..+..+..++.++.+.|++++|.++++.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566788899999999999998876553 234678889999999999999999988775
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-07 Score=84.11 Aligned_cols=212 Identities=11% Similarity=0.066 Sum_probs=160.9
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK-QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
++++. ....+..+.|+..++++++.+|. +..+|+....++...| ++++++..++++.+.+ +-+..+|+....++.+
T Consensus 42 ~~ra~-l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAV-YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 34433 33457889999999999998876 7788988888888888 6899999999999876 5566678777666767
Q ss_pred cCCc--chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CCh-
Q 037409 129 MGIT--SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT---RNT- 202 (603)
Q Consensus 129 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 202 (603)
.|+. +++...++++++..++ |..+|+....++...|+++++++.++++.+.+ +.|..+|+....++.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence 7763 6778888899888655 88899999999999999999999999999876 55778888877666554 222
Q ss_pred ---HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 037409 203 ---LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD----GFVDKAKELLLQMKDRNINPNVITYNSLICGFCC 271 (603)
Q Consensus 203 ---~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (603)
+++++...+++.. .|.|...|+-+...+... +...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4677788788776 467788888888888773 34456777777766543 2356666777777764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-07 Score=78.77 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKM 482 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (603)
..+-..+...|+-+....+........ ..|.......+....+.|++.+|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566666777777777666654332 2244555556677777788888888887777655 67778888888888888
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
|+++.|..-|.+..+..+. ++...+.++..+.-.|+.+.|..++......+ +-|..+-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888877776444 56667777777777888888888887777654 346666677777777788888777766
Q ss_pred HHHH
Q 037409 563 HKMA 566 (603)
Q Consensus 563 ~~~~ 566 (603)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-07 Score=81.15 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=122.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3468899998887554432221 11 01223677888888888888766 78999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHH-HHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWL-CKEGQ--MDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
++|...|++..+.++. +...+..++.++ ...|+ .++|.++++++++.+ +.+...+..++..+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998776 888888888874 67777 599999999999986 667888999999999999999999999
Q ss_pred HHHHHCCCC
Q 037409 563 HKMAAEKLV 571 (603)
Q Consensus 563 ~~~~~~~~~ 571 (603)
+++++..+.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 999986553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-06 Score=90.97 Aligned_cols=216 Identities=12% Similarity=0.078 Sum_probs=114.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 037409 67 YFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN-GLFPD---LFVLNLLINCLCKMGITSGAFVVLGRI 142 (603)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 142 (603)
+-|++.+..+|+ +...|...+....+.++.+.|++++++++.. ++.-. ...|.++++....-|.-+...++|+++
T Consensus 1445 eDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 344444454444 5666777777777777777777777777653 11111 123444455444455555555566665
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
.+.. ....+|..|...|.+.+.+++|.++++.|.+. +......|...+..+.++++-++|..++.++++.- |.
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l----Pk 1596 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL----PK 1596 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc----ch
Confidence 5541 12335555666666666666666666666543 12344556666666666666666666666655542 11
Q ss_pred --ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 223 --DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ 291 (603)
Q Consensus 223 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 291 (603)
......-.+..-.+.|+.+.+..+|+..... .+--...|+..++.-.+.|+.+.+..+|++....++.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 2222333334444555555555555555543 2223445555555555555555555555555555433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=76.44 Aligned_cols=110 Identities=9% Similarity=-0.100 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..+...+...|++++|...|+......+. +...|..++.++...|++++|+..|+++.+.+ +.+...+..++.++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3555677777888888888888888877655 67778888888888888888888888888765 567777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 551 QNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
..|++++|...++++++..+. ++..+...+.+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~--~~~~~~~~~~~ 135 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYA--DASWSEIRQNA 135 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence 888888888888888876654 55555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-05 Score=70.93 Aligned_cols=433 Identities=11% Similarity=0.103 Sum_probs=237.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHH
Q 037409 108 NSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVV 187 (603)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 187 (603)
++.+ |.|..+|+.|++-+..+ -.+++++.++++... ++.....|..-+..-.+.++++...++|.+.... ..+..
T Consensus 13 ie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlD 87 (656)
T KOG1914|consen 13 IEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLD 87 (656)
T ss_pred HhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHh
Confidence 3344 77888999998866555 888999999998876 3336678888888888899999999999988765 34566
Q ss_pred HHHHHHHHHHhc-CCh----HHHHHHHHHHHHhcCCccCCChhhHHHHHHH---------HHhcCChhHHHHHHHHHhhC
Q 037409 188 TFNTLINGLCRT-RNT----LVALKLFEEMVNEFGAICKPDVVTYNSIIDG---------LCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 188 ~~~~l~~~~~~~-g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~ 253 (603)
.|...+.--.+. |+. +.-.+.|+-.+...+. ...+...|+..+.. |..+.+++...++++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 666665544332 222 3344455555554321 11223344444433 23344555666677766653
Q ss_pred CCCCChhhHHHH------HHHH-------HhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHH--HH
Q 037409 254 NINPNVITYNSL------ICGF-------CCVDDWKEAKCLFIEMMDN--GVQPDVVTFNAMINYNCKDGKMDKVN--RL 316 (603)
Q Consensus 254 ~~~~~~~~~~~l------~~~~-------~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~--~~ 316 (603)
-+.--...|+-. |+.. -+...+..|..+++++... |......+ .-..|-.++.. ++
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVEL 239 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHH
Confidence 111111111110 0000 0111223333333333211 11100000 00011111111 11
Q ss_pred HHHHH----HCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCcchH-H----HHHHHHHhcCC------
Q 037409 317 LELMI----QRGVN-PDTVTYNSLMDGFCLVGRISRARELFVSMVS-KGCRHDVYSY-N----ILINANCKDQK------ 379 (603)
Q Consensus 317 ~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~-~----~l~~~~~~~~~------ 379 (603)
+...+ ..+.. .+..... ....-.+++.+. .+..|++... . ..-+.+...|+
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred HHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 11111 01111 0000000 001111111111 1111211110 0 00112233333
Q ss_pred -hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhCCCHHHHH
Q 037409 380 -VEDAVCLYREMLSERIRPSVITYNTLLSGLFQ---VGNLGDALKLIDKMQLN-DVVPDSFTFATYIDGLCKNGFVLEAV 454 (603)
Q Consensus 380 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 454 (603)
.+++..++++....-..-+...|..+.+.--. ....+.....++++... ..+| ..+|..++..-.+..-+..|.
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHH
Confidence 45566666665543222233334333332111 12355666677776543 2333 346778888888888899999
Q ss_pred HHHHHHHHcCCCC-ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 455 QVFQAIRNCKCEL-RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 455 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+|.++.+.+..+ ++.+.++++..|+ .++.+-|.++|+--++.-.. ++..-...+.-+...|+-..+..+|++.+..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999876665 7788888888776 57899999999987775332 4445567778888899999999999999998
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 534 NCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 534 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+++++ ..+|..++.--..-|+...+.++-+++...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66665 467999998889999999999998887643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-07 Score=92.35 Aligned_cols=136 Identities=9% Similarity=0.012 Sum_probs=106.1
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
..+...+..|.....+.|.+++|..+++.+.+.. |.+......++.++.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3356777778888888888888888888888765 556777777888888888888888888888887666 67777778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
..++.+.|++++|..+|+++...+ +.++.++..++.++...|+.++|...|+++.+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 888888888888888888888743 4457778888888888888888888888887653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-07 Score=77.17 Aligned_cols=155 Identities=11% Similarity=0.059 Sum_probs=122.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCH
Q 037409 371 INANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFV 450 (603)
Q Consensus 371 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (603)
+..|...|+++.+....+.+.. |. ..+...++.++++..++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3568889998887554433221 11 0122367778888888888776544 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHH-HhCCC--hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 451 LEAVQVFQAIRNCKCELRIETYNCLINGL-CKMGR--LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
++|...|++..+.. +.+...+..+..++ ...|+ .++|..++++..+.++. +...+..++..+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999877 66888999988874 67777 59999999999998777 8889999999999999999999999
Q ss_pred HHHHHCCCCCCHHH
Q 037409 528 LDMEAKNCVPSEVT 541 (603)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (603)
+++++.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 9999886 565443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00012 Score=73.30 Aligned_cols=205 Identities=14% Similarity=0.073 Sum_probs=141.0
Q ss_pred chhHHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037409 44 GTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLI 123 (603)
Q Consensus 44 ~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 123 (603)
....+..+.+......|..++|..+++..-...++ |..+...+-..|-..|+.++|..+|+++... -|+......+.
T Consensus 41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lF 117 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLF 117 (932)
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 33444566677777889999999888766554444 7888889999999999999999999999876 46688888899
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHhH---------HHHHHHHHHhcC-CCCcHHHHHHH
Q 037409 124 NCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAE-GRIME---------AARLFKKLNVFA-CDPNVVTFNTL 192 (603)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~---------A~~~~~~~~~~~-~~~~~~~~~~l 192 (603)
.+|.+-+++.+-.++--++.+.-++ +...+-+++..+.+. ...++ |.+.++.+.+.+ ---+..-....
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 9999999888766665555554333 445444455555443 22222 445555555543 11122223333
Q ss_pred HHHHHhcCChHHHHHHHH-HHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 037409 193 INGLCRTRNTLVALKLFE-EMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI 255 (603)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 255 (603)
...+...|.+++|.+++. ...+.. .+.+...-+.-+..+...+++.+..++-.++..+|.
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKL---TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 456667899999999994 444332 334444445667888899999999999999988753
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-06 Score=74.85 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
..+-..+...|+-+....+........ +.+.......+....+.|++..|+..+.+..... ++|...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 333444444455444444444433221 1133333334444555555555555555554432 23445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|..-|.+..+.. +.++..++++.-.+.-.|+++.|..++......+.. |...-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555554433 334444555555555555555555555555443322 3444444445555555555555444
Q ss_pred H
Q 037409 528 L 528 (603)
Q Consensus 528 ~ 528 (603)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-07 Score=80.76 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=35.8
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPG--MTSFTILLTMLAKNKQYDTVVSLFKRLNSN 110 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 110 (603)
+-.+......|++++|+..|++++...|... ..++..++.++.+.|++++|+..++++.+.
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3333444456666667776666666554311 234556666666666666676666666654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-06 Score=87.98 Aligned_cols=232 Identities=12% Similarity=0.057 Sum_probs=144.0
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc-CCC---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChh
Q 037409 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVF-ACD---PNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVV 225 (603)
Q Consensus 150 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (603)
+...|...|......++.++|++++++.... ++. --...|.++++....-|.-+...++|+++.+.. ..-.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-----d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-----DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-----chHH
Confidence 4556666677777777777777777776542 111 112356666666666676677777777777642 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ-PDVVTFNAMINYN 304 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 304 (603)
.|..|...|.+.+.+++|.++++.|.++ +......|...+..+.++++-+.|..++.+.++.-.+ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 5666777777777777777777777665 2345667777777777777777777777776664111 1233444445555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhcCChHH
Q 037409 305 CKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDV--YSYNILINANCKDQKVED 382 (603)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 382 (603)
.+.|+.+.+..+|+..+...++ ....|+..+++-.++|+.+.++.+|+++...++.+-- ..|...+..--+.|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6677777777777777665333 4566777777777777777777777777776554432 344555554444555544
Q ss_pred HHHHHH
Q 037409 383 AVCLYR 388 (603)
Q Consensus 383 A~~~~~ 388 (603)
+..+=.
T Consensus 1690 vE~VKa 1695 (1710)
T KOG1070|consen 1690 VEYVKA 1695 (1710)
T ss_pred HHHHHH
Confidence 444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-07 Score=73.37 Aligned_cols=123 Identities=10% Similarity=-0.055 Sum_probs=92.4
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC
Q 037409 420 KLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 499 (603)
.++++..+. .|+ .+......+...|++++|...|+.+.... +.+...+..++.++.+.|++++|...|++..+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344555443 233 34456677788888898988888888766 6678888888888888999999999999888876
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 500 PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 500 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+. +...+..++.++...|++++|+..|+++++.. +.+...+.....++
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 65 77888888888888899999999999888864 44555555544443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-06 Score=70.45 Aligned_cols=190 Identities=14% Similarity=0.041 Sum_probs=130.2
Q ss_pred cCChHHHHHHHHHHHhC---C-CCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 377 DQKVEDAVCLYREMLSE---R-IRPSV-ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
..+.++.++++.++... + ..++. ..|..++-+....|+.+.|...++.+...- +.+......-..-+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 56778888888777653 2 33333 234445555667788888888888877653 223333222223345568888
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+|+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+....+.-+. |...|..+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888765 666677766666666777777888888777776443 88888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 037409 532 AKNCVPSEVTFCTLLRGFVQNN---KKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 532 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 570 (603)
=.. |.++..+..++..+.-.| +.+.+.++|.+.++.++
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 754 556667777777766555 34667788888877544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-05 Score=68.63 Aligned_cols=247 Identities=15% Similarity=0.085 Sum_probs=137.3
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 57 SGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
.+-|++..++..-...-... .++..-.-+.++|...|++...++-..... .|....+..+...+..-++.+.-.
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHHHH
Confidence 34566766666555442221 344445556777777777665544322221 233333333333333333333333
Q ss_pred -HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 137 -VVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
.+.+.+.......+......-+..|+..|++++|.+...... +......-+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 233333333333333333334455677777888777766622 3333333455666777777777777777764
Q ss_pred cCCccCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 216 FGAICKPDVVTYNSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ 291 (603)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 291 (603)
. +..+.+.|..+|.+ .+.+.+|.-+|++|.++ .+|++.+.+-...++...|++++|..+++..+... .
T Consensus 167 d------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 167 D------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred c------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 2 45566666666654 34577777777777664 56677777777777777777777777777777664 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 037409 292 PDVVTFNAMINYNCKDGKM-DKVNRLLELMIQR 323 (603)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 323 (603)
.++.+...++..-...|.. +...+.+.++...
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 3455555555544444443 3344455555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-06 Score=84.00 Aligned_cols=217 Identities=12% Similarity=0.044 Sum_probs=154.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 037409 327 PDTVTYNSLMDGFCLVGRISRAR-ELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL 405 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 405 (603)
.++.....+=.+.+..|..++|- +++.++.+ ++.....-....+++.-....... ...+...+..|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L 92 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLV 92 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHH
Confidence 34444444445566677666663 34433321 333333333333444333333332 34468889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
.....+.|.+++|..+++...+..+. +......++..+.+.+++++|+..+++..... +.+......+..++.+.|++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999999886433 45667778888999999999999999999876 67888999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
++|..+|+++...++. +..++..++.++...|+.++|...|+++.+.. .+....|..++ ++...-...++++
T Consensus 171 ~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 171 EQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHc
Confidence 9999999999986554 68889999999999999999999999999873 45545544332 2334444555555
Q ss_pred H
Q 037409 566 A 566 (603)
Q Consensus 566 ~ 566 (603)
-
T Consensus 243 ~ 243 (694)
T PRK15179 243 G 243 (694)
T ss_pred C
Confidence 3
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.2e-06 Score=69.77 Aligned_cols=254 Identities=13% Similarity=0.084 Sum_probs=164.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
++-+.-.|++..++..-....... -+...-..+-++|...|....... .+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555788887776655544332 344445556677777777554332 222221 23333333333334444454
Q ss_pred HHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHH
Q 037409 381 EDAVC-LYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQA 459 (603)
Q Consensus 381 ~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 459 (603)
++-+. +.+.+.......+......-...|...|++++|++..+... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 34444444333333333444556889999999999887632 223333344556778889999999999
Q ss_pred HHHcCCCCChHHHHHHHHHHHh----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 460 IRNCKCELRIETYNCLINGLCK----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
|.+.. +..+.+.|..++.+ .+.+.+|.-+|+++.++ ..|+..+.+..+.++...|++++|..+++.++...
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 98633 55677777777654 34789999999999986 45788899999999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCC
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSK-VVVLLHKMAAEKLV 571 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 571 (603)
..++.++..++-+-...|...+ ..+.+.++....+.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 6678888777777777777644 45566666654443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.9e-07 Score=71.24 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=82.1
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 456 VFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
.++.+.... +.+......++..+...|++++|...|+.+.+.++. +...|..++.++...|++++|...+++.++.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344444433 334566667777777888888888888887776554 66777778888888888888888888877765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.+...+..++.++...|++++|...+++.++..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 556777777888888888888888888888776543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-07 Score=73.49 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=93.1
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 491 LFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 491 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
.++++....+. +......++..+...|++++|.+.++++...+ +.+...+..++..+...|++++|..++++..+.++
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46666665444 55667778888999999999999999999876 66888999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 571 VVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++..+..++.+|...|++++|.+++++.+
T Consensus 83 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 83 --DDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 478888999999999999999999998765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-05 Score=79.54 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=113.6
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHH
Q 037409 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV-VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYN 228 (603)
Q Consensus 150 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (603)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++...+..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------- 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------- 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h-----------------
Confidence 3445556666666666666666666655443 3332 2233333344444443333322 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 229 SIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG 308 (603)
Q Consensus 229 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (603)
++.......++.-...+...+.+. .-+...+..+..+|-+.|+.++|..+++++++.. +.|+...|.+...|...
T Consensus 89 -~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 -LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred -hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 222222222332222333333332 1133355556666666666666666666666654 44555666666666665
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR 388 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 388 (603)
+.++|..++.++... +...+++..+.+++.++.... |+ +.+.-..+.+
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ 211 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIER 211 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHH
Confidence 666666665554433 444445556666666665542 11 1111122222
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 389 EMLSE-RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 389 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
.+... +..--..++-.+...|...+++++++.+++.+.+.... |.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22221 11122334444555566667777777777777665433 4444444554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-05 Score=79.97 Aligned_cols=222 Identities=9% Similarity=0.077 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 78 SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
+.+...|..|+..+...+++++|.++.+...+.. |.....|..++-.+.+.++++++.-+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~--------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL--------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------
Confidence 3467788888888888888999999888777663 33333444444466666665554444 22
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.......++.-..-+...+... .-+..++..+..+|-+.|+.++|..+++++++.+ +.|+.+.|.+.-.|...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHh
Confidence 22222222332222222333332 2233345555555555555555555555555542 44455555555555555
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN-------------------GVQPDVVTFN 298 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~~~~ 298 (603)
++++|++++.+...+ +...+++.++.+++.++... |..--..++.
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 555555555554433 22222233333333332222 1111223334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 299 AMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFC 340 (603)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (603)
.+-..|-..++++++..+++.+++.... |.....-++..|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 4445556666677777777777666433 4444555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.6e-06 Score=76.38 Aligned_cols=166 Identities=11% Similarity=0.045 Sum_probs=118.2
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 037409 396 RPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCL 475 (603)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (603)
.|+...+...+........-..+..++.+..+ ..-...-|...+ .+...|.+++|+..++.+.+.. |.|+..+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555555555554443333333333333332 121233343333 4457789999999999988754 6778888888
Q ss_pred HHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037409 476 INGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
...+.+.++.++|.+.++++....+. ....+-.+..++.+.|++.+|+.+++...... +.|+..|..|+.+|...|+.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 88999999999999999999986544 36667788889999999999999999988875 77888999999999999998
Q ss_pred HHHHHHHHHHHH
Q 037409 556 SKVVVLLHKMAA 567 (603)
Q Consensus 556 ~~a~~~~~~~~~ 567 (603)
.++...+.+...
T Consensus 425 ~~a~~A~AE~~~ 436 (484)
T COG4783 425 AEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHHH
Confidence 887766665544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-06 Score=80.23 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=75.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++.+.++.. +.+...+..-+..+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344455555666666666666666643 23 23345556666666666666666666543 44555555556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 553 NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 553 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++++.|+++.+++++..+. +...|..|+.+|.+.|++++|+-.++.+|
T Consensus 248 ~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6667777777766664443 66666667777777777777766666655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.5e-06 Score=66.66 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS--EVTFCTLL 546 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 546 (603)
.|..++..+ ..++...+...++.+.+..+.-. ....-.+...+...|++++|...|+.+.+....|+ ......|+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 47788888888888887644411 22333455677888999999999998888652222 23455678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..+...|++++|+..++...... ..+..+...+++|.+.|++++|++.|++-+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888999999998887643221 456677888899999999999999888643
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00013 Score=61.79 Aligned_cols=201 Identities=14% Similarity=0.087 Sum_probs=151.1
Q ss_pred hcCCHHHHHHHHHHHHHc---C-CCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 341 LVGRISRARELFVSMVSK---G-CRHDVY-SYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
...+.++..+++..+... | ..++.. .+..++-+....|+.+.|...++++...- +.+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345788999999888754 3 344443 35556667778999999999999988764 32333333333346678999
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
++|+++++.+...++. |..++-.-+...-..|..-+|++-+....+.. ..|.+.|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999987643 66677766767777888889999988888754 789999999999999999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 496 QHKGPIPDVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 496 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.-..|. ++..+..+...+.-.| +.+-+.++|.+.++.+ +.+...+..+.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~-~~~~ral~GI~ 232 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN-PKNLRALFGIY 232 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC-hHhHHHHHHHH
Confidence 987555 6777778887765554 6678899999999875 23444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-05 Score=70.86 Aligned_cols=184 Identities=15% Similarity=0.125 Sum_probs=135.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 037409 362 HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI 441 (603)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (603)
|+...+...+........-..+...+-+..+ ..-...-|..- ..+...|++++|+..++.+.+..+ .|+.......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHH-HHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3444455555554444333333333333222 11122333333 345677999999999999987643 3677777788
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChh
Q 037409 442 DGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMD 521 (603)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 521 (603)
+.+...++.++|.+.++.+.... |........+..+|.+.|++.+|+++++......+. |+..|..|..+|...|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchH
Confidence 89999999999999999999865 445788889999999999999999999999998777 8999999999999999987
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 522 KANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++..... ..|.-.|++++|...+..+.++.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 7765444 34667799999999998887653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=53.47 Aligned_cols=32 Identities=47% Similarity=0.728 Sum_probs=14.3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 254 NINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-07 Score=52.35 Aligned_cols=32 Identities=44% Similarity=0.816 Sum_probs=15.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037409 146 CFTPNTVTFNFLINGLCAEGRIMEAARLFKKL 177 (603)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 177 (603)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=64.04 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCH--hHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDV--VTCSTM 510 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 510 (603)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+....+.|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4677787877788777643 333 334445667777888888888888888886543332 234456
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
..++...|++++|+..++..... ......+...+.+|.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888664332 334556677888888888888888888765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=62.50 Aligned_cols=100 Identities=8% Similarity=-0.026 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+....-.+...+...|++++|.++|+-+...++. +..-|-.|+.++-..|++++|+..|..+...+ +.|+..+..++.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4455666777778899999999999999887666 77788889999999999999999999999886 677888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999888654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=73.87 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKM 482 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (603)
..++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++..+.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 444555556667777777777776653 33 23345556666666677777776666543 44566666666666677
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
++.+.|..+.+++.+..|. +..+|..|+.+|...|+++.|+..+..+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777765443 45567777777777777777776666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-05 Score=61.11 Aligned_cols=96 Identities=11% Similarity=-0.066 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 515 (603)
..-.+..-+...|++++|..+|+-+...+ +.+..-|..|.-++-..|++++|+..|......++. |+..+-.++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 34445555667777888887777777655 556677777777777777888888888777776654 6667777777777
Q ss_pred HcCChhHHHHHHHHHHHC
Q 037409 516 KEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~ 533 (603)
..|+.+.|.+.|+.++..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888777777777654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00072 Score=61.74 Aligned_cols=287 Identities=12% Similarity=0.054 Sum_probs=145.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD 273 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (603)
..+.+..++..|+..+..+++. .+.+..-|..-+..+...|++++|.--.+.-.+.... ....+.....++...+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 3455667777788888887776 3455556666666677777777776555544432110 2223334444555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHH-HHHHHhcCCHHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN-PDTVTYNSL-MDGFCLVGRISRAREL 351 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~~~~~~~a~~~ 351 (603)
+..+|.+.++.- ..+ ....++..++........ |.-.++..+ ..++...|+.+.|.+.
T Consensus 132 ~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 555555555411 000 111222222222222211 222333333 2344567777887777
Q ss_pred HHHHHHcCCCCCcchHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 037409 352 FVSMVSKGCRHDVYSYNILI--NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLND 429 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (603)
-..+++.+ ....+..++ .++...++.+.+...|++.+..+ |+...-.. .-.-.+.++.+...
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~----------~~~~~k~le~~k~~- 255 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKS----------ASMMPKKLEVKKER- 255 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHh----------HhhhHHHHHHHHhh-
Confidence 77766653 112222233 33445677778888887776642 22211110 00111122222221
Q ss_pred CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhH
Q 037409 430 VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC---KCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVT 506 (603)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 506 (603)
.+-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.-.+...+.+.. -...
T Consensus 256 -----------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yika 323 (486)
T KOG0550|consen 256 -----------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKA 323 (486)
T ss_pred -----------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHH
Confidence 12234566777777777666643 23344555666666666777777777776666664211 1222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+..-..++...++|++|.+-++++.+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334455566777777777766654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=62.95 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 517 EGQMDKANDLLLDMEAKNCV-PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|..++++ .+.+.. +......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777775411 1344555677778888888888777777 333332 4455556677788888888888
Q ss_pred HHHHh
Q 037409 596 NQFRH 600 (603)
Q Consensus 596 ~~~~~ 600 (603)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-05 Score=59.20 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555555566666666666665554332 33445555555555566666666666655543 3334455555555556
Q ss_pred cCCHHHHHHHHHHHHH
Q 037409 552 NNKKSKVVVLLHKMAA 567 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~ 567 (603)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666665555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-05 Score=71.81 Aligned_cols=92 Identities=12% Similarity=-0.021 Sum_probs=62.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
...+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.++. +...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 344556677777777777776655 456666777777777777777777777777766544 556666677777777777
Q ss_pred hHHHHHHHHHHHCC
Q 037409 521 DKANDLLLDMEAKN 534 (603)
Q Consensus 521 ~~A~~~~~~~~~~~ 534 (603)
++|+..|+++++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0043 Score=56.46 Aligned_cols=285 Identities=15% Similarity=0.091 Sum_probs=168.9
Q ss_pred hhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH----HH
Q 037409 53 DRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTM--LAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLIN----CL 126 (603)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~ 126 (603)
+.+..+.||-..|++.-.+..+.- ..|......++.+ -.-.|+++.|.+-|+.|.. |+++-..-++ .-
T Consensus 91 GliAagAGda~lARkmt~~~~~ll-ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleA 164 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLL-SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEA 164 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHH
Confidence 345557788888888877764331 1233333333333 3457888888888888874 2333222222 23
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCcHHHHH--HHHHH--HH-hcC
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA-CDPNVVTFN--TLING--LC-RTR 200 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~--~l~~~--~~-~~g 200 (603)
.+.|+.+.|++.-+.....-+. -...+..++...+..|+++.|+++.+.-.... +.++..--. .|+.+ .. -..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 5678888888888777766433 45677788888888888888888888765432 344443211 12211 11 123
Q ss_pred ChHHHHHHHHHHHHhcCCccCCChhh-HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037409 201 NTLVALKLFEEMVNEFGAICKPDVVT-YNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAK 279 (603)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 279 (603)
+...|...-.+..+ ..||... -......+.+.|+..++-.+++.+-+....|+. + .+..+.+.|+. ++
T Consensus 244 dp~~Ar~~A~~a~K-----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~ 312 (531)
T COG3898 244 DPASARDDALEANK-----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--AL 312 (531)
T ss_pred ChHHHHHHHHHHhh-----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HH
Confidence 45666666666655 3455433 233456778888888888888888776444432 2 22334455543 22
Q ss_pred HHHHHH---HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 037409 280 CLFIEM---MDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFC-LVGRISRARELFVSM 355 (603)
Q Consensus 280 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 355 (603)
+-++.. .... +.+..+...+..+....|++..|..--+..... .|....|..|.+.-. ..||-.++...+.+.
T Consensus 313 dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 222222 2221 234566666777777778887777666665544 556666666666544 347888888877777
Q ss_pred HHc
Q 037409 356 VSK 358 (603)
Q Consensus 356 ~~~ 358 (603)
++.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0003 Score=64.12 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=73.5
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGP---IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
+-..+.|++..|.+.+.+.+..+| .|+...|.....+..+.|+..+|+.--+++++.+ +.-...+..-+.++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 345688999999999999998643 4566778888888899999999999999998753 222334555677888899
Q ss_pred CHHHHHHHHHHHHHCCC
Q 037409 554 KKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~ 570 (603)
+|++|++-++++.+...
T Consensus 336 ~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999987544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0045 Score=56.31 Aligned_cols=267 Identities=13% Similarity=0.116 Sum_probs=176.8
Q ss_pred hHHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037409 46 SIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC 125 (603)
Q Consensus 46 ~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (603)
.+-..|.+......|++++|++-|+-|+.. |..-.--...|.-.--+.|..+.|.++-+++...- +.-+......+..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHH
Confidence 344466666666789999999999999864 22112223333334457899999999999987764 4556788889999
Q ss_pred HHhcCCcchHHHHHHHHHHCC-CCCCHhh--HHHHHHHHH---hcCCHhHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHh
Q 037409 126 LCKMGITSGAFVVLGRILRSC-FTPNTVT--FNFLINGLC---AEGRIMEAARLFKKLNVFACDPNVVTFN-TLINGLCR 198 (603)
Q Consensus 126 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 198 (603)
.+..|+++.|+++.+.-.... +.+++.- --.|+.+-. -.-+...|...-.+..+. .||.+--. .-..++.+
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~ 275 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFR 275 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHh
Confidence 999999999999998765432 2333321 222222211 123566666665555544 67765433 33578899
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCC-ChhhHHHHHHHHHhcCCHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR-NINP-NVITYNSLICGFCCVDDWK 276 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 276 (603)
.|+..++-.+++.+-+.. |....+. +-.+.+.|+ .+++-+++..+. ..+| +......+..+-...|++.
T Consensus 276 d~~~rKg~~ilE~aWK~e-----PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 276 DGNLRKGSKILETAWKAE-----PHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred ccchhhhhhHHHHHHhcC-----CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 999999999999998853 4443332 222345554 344333333221 1222 5566777788888999998
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCC
Q 037409 277 EAKCLFIEMMDNGVQPDVVTFNAMINYNC-KDGKMDKVNRLLELMIQRGVNP 327 (603)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 327 (603)
.|..--+..... .|....|..|...-. ..|+-.++...+-+..+..-.|
T Consensus 347 ~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 347 AARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 887776666654 678888888888764 4599999999999988764333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-05 Score=60.27 Aligned_cols=102 Identities=16% Similarity=0.065 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC--VPSEVTFCTL 545 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l 545 (603)
.++..++..+.+.|++++|...|..+.+..+.. ....+..++.++.+.|++++|...++++..... +....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466778888899999999999999998764431 134667788899999999999999999987531 1125678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.++.+.|++++|...++++++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 89999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-05 Score=57.70 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..+..+. +...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHH
Confidence 3445555666666666666666666543 334455556666666666666666666666654433 4455566666666
Q ss_pred cCCcHHHHHHHHHhh
Q 037409 587 KDKKYRECLNQFRHL 601 (603)
Q Consensus 587 ~~g~~~eA~~~~~~~ 601 (603)
..|++++|...+++.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 666666666666554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=61.07 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHhhCCCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 482 MGRLKTACKLFHRLQHKGPI-PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
.|+++.|+.+++++.+..+. |+...+..++.++.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777775442 2444555577778888888888888777 3322 2233455566777888888888887
Q ss_pred HHHH
Q 037409 561 LLHK 564 (603)
Q Consensus 561 ~~~~ 564 (603)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=57.63 Aligned_cols=105 Identities=19% Similarity=0.080 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTM 510 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 510 (603)
.++..++..+...|++++|...++.+..... +.....+..++.++.+.|+++.|...|+.+....+.. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677778888999999999988876431 1124567778888889999999999999888764432 24567778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
+.++.+.|++++|...++++++.. +.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY-PGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC-cCChh
Confidence 888888899999999999888874 34433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.011 Score=58.05 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhh-CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQH-KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM 530 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 530 (603)
..+|..|..-....|.++.|...--.+.+ .++-|....|..+.-+-+....+.-.-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 34445555555667777777766554444 234566677776666655544444333333333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00018 Score=63.36 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CcchHHHH
Q 037409 62 SNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMG---ITSGAFVV 138 (603)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 138 (603)
.+....-++.-++.+|. |...|-.|..+|...|+++.|...|.++.+.. ++++..+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44445555555565554 66667777777777777777777777776654 455566666655544332 23345566
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVF 180 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 180 (603)
++++++.++. |+.+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666665433 5555555555666666666666666666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=64.48 Aligned_cols=120 Identities=10% Similarity=-0.008 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC---ChhHHHH
Q 037409 449 FVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG---QMDKAND 525 (603)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~ 525 (603)
..+....-++.-...+ |.|...|..|..+|...|+.+.|..-|.+..+..++ |...+..+..++..+. ...++..
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3555555555555545 778999999999999999999999999999997555 7888888888765443 4578899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 526 LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+|++++..+ +.|..+...|+..+...|++.+|...|+.|++..+.
T Consensus 215 ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 215 LLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999976 567788889999999999999999999999986553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0012 Score=58.74 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=95.8
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCH-HHHHHHHH
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMT--SFTILLTMLAKNKQYDTVVSLFKRLNSNGLF-PDL-FVLNLLIN 124 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~ 124 (603)
.|-.+......|++++|+..|++++...|.+... +.-.++.++.+.+++++|...|++.++.... |+. .++-.++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3455555556788888888888888877764322 2245667778888888888888888876411 221 12222222
Q ss_pred HHHhcC---------------Cc---chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH
Q 037409 125 CLCKMG---------------IT---SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV 186 (603)
Q Consensus 125 ~~~~~g---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 186 (603)
+....+ |. ..|+..|+.+++. |=...-..+|...+..+... =.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LA 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HH
Confidence 211111 00 1222333333333 22222233333333333210 00
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
.--..+...|.+.|.+..|+.-++.+++..+. .+........++.+|...|..++|.++...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00113455666777777777777777766421 22234445566677777777777766655543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00031 Score=59.16 Aligned_cols=113 Identities=11% Similarity=-0.021 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
.+..++..+...|++++|...|++..+..+.++ ...+..++.++.+.|++++|+..++++++.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444444445555555555555444322221 2344444555555555555555555555432 2233344444444
Q ss_pred HHhcCC--------------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Q 037409 549 FVQNNK--------------KSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK 589 (603)
Q Consensus 549 ~~~~g~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 589 (603)
+...|+ +++|.++++++...++. .+..++..+...|
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~-----~~~~~~~~~~~~~ 165 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN-----NYIEAQNWLKTTG 165 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch-----hHHHHHHHHHhcC
Confidence 444443 46666667666654332 2444444444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0002 Score=68.04 Aligned_cols=92 Identities=16% Similarity=0.041 Sum_probs=57.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChh
Q 037409 407 SGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLK 486 (603)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 486 (603)
..+...|++++|+..|++++..... +...+..+..++...|++++|+..++++++.. +.+...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3445566666666666666655433 45555566666666666666666666666654 445566666666666666666
Q ss_pred HHHHHHHHHhhCCC
Q 037409 487 TACKLFHRLQHKGP 500 (603)
Q Consensus 487 ~A~~~~~~~~~~~~ 500 (603)
+|...|++.++.++
T Consensus 88 eA~~~~~~al~l~P 101 (356)
T PLN03088 88 TAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHhCC
Confidence 66666666666543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.8e-05 Score=65.85 Aligned_cols=96 Identities=20% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhH
Q 037409 90 MLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIME 169 (603)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (603)
-+.+.++|.+|+..|.+++... |.|+..|.--..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3444555555555555555443 334444444444555555555555544444444221 23345555555555555555
Q ss_pred HHHHHHHHHhcCCCCcHHHH
Q 037409 170 AARLFKKLNVFACDPNVVTF 189 (603)
Q Consensus 170 A~~~~~~~~~~~~~~~~~~~ 189 (603)
|++.|++.++. +|+..+|
T Consensus 168 A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHhhhcc--CCCcHHH
Confidence 55555554443 4444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0014 Score=52.94 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC-CCHhhHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFT-PNTVTFNFLI 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 158 (603)
.+.....+..++...|++.+|...|++...--+-.|......+.++....+++..|...++.+.+..+. .+......+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 445556777888888888888888888876555567777777888888888888888888887765321 1233445566
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
+.+...|++.+|...|+..... -|+...-......+.++|+.+++..-+..+.+
T Consensus 168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 7777888888888888887765 56665555555666677766666555544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.001 Score=61.16 Aligned_cols=170 Identities=13% Similarity=0.138 Sum_probs=89.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSN----GLFPD-LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC 162 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (603)
...|-..|++++|...|.++... +-+.+ ...+.....++ +.+++++|...+++ .+..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------AIEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------HHHHHH
Confidence 55667777888888877776432 10000 01122222222 22244444444433 334456
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcCCccC--CChhhHHHHHHHHHhcCC
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT-RNTLVALKLFEEMVNEFGAICK--PDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 239 (603)
..|++..|-+++.++ ...|... |++++|++.|++..+....... .-..++..++..+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 666666665555554 3445555 7888888888887765310000 113345566777888888
Q ss_pred hhHHHHHHHHHhhCCCCC-----Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 240 VDKAKELLLQMKDRNINP-----NVI-TYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
+++|.++|+++....... +.. .+...+-++...||...|...+++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888776542221 121 2233344556677888888888777654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00011 Score=61.68 Aligned_cols=96 Identities=9% Similarity=-0.055 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
...+..++..+...|++++|...|++.....+.| ...+|..++.++...|++++|+..+++++... +.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666677777788888888887777653332 23467777777888888888888888877753 33445555556
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 037409 547 RGFV-------QNNKKSKVVVLLHKM 565 (603)
Q Consensus 547 ~~~~-------~~g~~~~a~~~~~~~ 565 (603)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 777777555554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.013 Score=54.62 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+...|++.++.-.-..+.+ +. |++.+|..++-++....+++||..++..+|
T Consensus 472 Lysqgey~kc~~ys~WL~~--ia-PS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IA-PSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hC-CcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 4566777776665555554 44 577777777777777777777777776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=63.63 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=77.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
..-..+.+++++|+..|.++++.. |.|...|..-..+|.+.|.++.|++-.+..+..++. ...+|..|+.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 344567788888888888888776 667888888888888888888888888888886544 566888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHH
Q 037409 521 DKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
++|++.|++.++. .|+..+|
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHH
Confidence 8888888888885 4665554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0045 Score=50.13 Aligned_cols=134 Identities=11% Similarity=0.033 Sum_probs=92.3
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CCHhHHHH
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PDVVTCST 509 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 509 (603)
.|....-..|..++...|+..+|...|++...--+..|...+..+.++....+++..|...++++.+.++. -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566677777888888888888887776545567777777788888888888888888877775321 01223445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+...+...|++.+|+..|+.+.+. -|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667778888888888888888774 4666665556666777776666655555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00074 Score=67.02 Aligned_cols=137 Identities=6% Similarity=-0.102 Sum_probs=74.9
Q ss_pred CCHHhHHHHHHHHHh--C---CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC--------CChhHHHHHHHHHhhC
Q 037409 432 PDSFTFATYIDGLCK--N---GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKM--------GRLKTACKLFHRLQHK 498 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 498 (603)
.+...|...+++... . ++...|..+|+++.+.. |.....+..+..++... .++..+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 344455555444322 1 12445556666655543 33344444433333221 1123333333333332
Q ss_pred C-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 499 G-PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 499 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
. ...+...|..+.......|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++...++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 1 11244566666666666777777777777777764 56667777777777777777777777777766555
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.9e-05 Score=52.20 Aligned_cols=63 Identities=6% Similarity=0.067 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN-KKSKVVVLLHKMAA 567 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 567 (603)
..+|..++..+...|++++|+..|+++++.+ +.+...|..++.++...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555555555555555555555543 334445555555555555 45555555555554
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00047 Score=52.96 Aligned_cols=94 Identities=17% Similarity=0.073 Sum_probs=63.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP---SEVTFCTLLR 547 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 547 (603)
-.+..++-..|+.++|+.+|++....|+... ...+-.+..++...|++++|+.++++..... +. +......+..
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHH
Confidence 3455667777888888888888887766533 3355667777788888888888888777652 22 2333344555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037409 548 GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (603)
++...|+.++|++.+-..+.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 67777888888877766553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.2e-05 Score=44.90 Aligned_cols=33 Identities=48% Similarity=0.842 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 261 TYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 261 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344455555555555555555555544444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.9e-05 Score=51.83 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC-cHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK-KYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~l 602 (603)
++.+|..++..+...|++++|+..++++++.++. ++..+..++.++.+.| ++++|++.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 5678899999999999999999999999998765 8999999999999999 8999999999864
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00083 Score=56.58 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD--LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
....+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|...++++.+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 355678888888899999999999999886542222 356777888888999999999999888886443 56667777
Q ss_pred HHHHHhcCCHhHHHHHH
Q 037409 158 INGLCAEGRIMEAARLF 174 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~ 174 (603)
...+...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 77777777755544433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.6e-05 Score=50.59 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+..+...|++++|++.|+++++.. +.+...+..++.++...|++++|...++++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 444555566666666666666553 3345555556666666666666666666655543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.1e-05 Score=44.94 Aligned_cols=33 Identities=55% Similarity=0.979 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN 258 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 258 (603)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888887777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00038 Score=58.40 Aligned_cols=86 Identities=8% Similarity=-0.032 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHH
Q 037409 60 ITSNEAVYFFDCMIKMKPS-PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFP--DLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
..+..+...+..+++.... .....|..++..+...|++++|+..|++++.....+ ...++..+..++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555432222 224556666666666777777777777766542111 1234555555556666666666
Q ss_pred HHHHHHHHC
Q 037409 137 VVLGRILRS 145 (603)
Q Consensus 137 ~~~~~~~~~ 145 (603)
..++++...
T Consensus 93 ~~~~~Al~~ 101 (168)
T CHL00033 93 EYYFQALER 101 (168)
T ss_pred HHHHHHHHh
Confidence 666555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=65.59 Aligned_cols=62 Identities=10% Similarity=-0.048 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
..|..+.......|++++|...+++++.. .|+...|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L-----~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL-----EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44444444444455566666666655553 234555555555555566666666655555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.026 Score=52.58 Aligned_cols=435 Identities=12% Similarity=0.076 Sum_probs=224.7
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh
Q 037409 73 IKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTV 152 (603)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 152 (603)
++.+|+ |+.+|..++.-+..+|.+++..+.+++|..- ++--+.+|..-+..-....++.....+|.+.++... +..
T Consensus 35 IkdNPt-nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ld 110 (660)
T COG5107 35 IKDNPT-NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLD 110 (660)
T ss_pred hhcCch-hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHh
Confidence 455555 8999999999999999999999999999743 344566777777777778899999999999988744 567
Q ss_pred hHHHHHHHHHhcCCH------hHHHHHHHHHHh-cCCCCcH-HHHHHHHHHHH---hcC------ChHHHHHHHHHHHHh
Q 037409 153 TFNFLINGLCAEGRI------MEAARLFKKLNV-FACDPNV-VTFNTLINGLC---RTR------NTLVALKLFEEMVNE 215 (603)
Q Consensus 153 ~~~~l~~~~~~~g~~------~~A~~~~~~~~~-~~~~~~~-~~~~~l~~~~~---~~g------~~~~A~~~~~~~~~~ 215 (603)
.|...+....+.+.. ....+.|+-... .+++|-. ..|+..+..+- ..| +.+...+.+.+++..
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 777777654443311 122334444333 3444433 34554443322 233 344555666666643
Q ss_pred cCCccCCC-h-hhHH------HHHHHHHh-------cCChhHHHHHHHHHhh--CCCC----CChhhHHH----------
Q 037409 216 FGAICKPD-V-VTYN------SIIDGLCK-------DGFVDKAKELLLQMKD--RNIN----PNVITYNS---------- 264 (603)
Q Consensus 216 ~~~~~~~~-~-~~~~------~l~~~~~~-------~g~~~~a~~~~~~~~~--~~~~----~~~~~~~~---------- 264 (603)
|.+ . ..|+ .-+..... .--+-.|...++++.. .|.. .+..+++-
T Consensus 191 -----P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 191 -----PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred -----ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 111 1 1111 11111000 1113345555555432 1221 12222222
Q ss_pred -HHHHHHhc------CCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037409 265 -LICGFCCV------DDW-KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLM 336 (603)
Q Consensus 265 -l~~~~~~~------~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
.|..-... +.. ...--++++.... +......|..--..+...++-+.|....++.... .|. ....+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~ls 340 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLS 340 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHH
Confidence 11110000 000 0111112221111 1222333333333344455555555554433221 122 111222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 037409 337 DGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK---DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG 413 (603)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (603)
..|...++.+.....|+...+. ...--..+..-.. .|+++.--+++-+-. ..-...|..++....+..
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHh
Confidence 3333444555555555544321 0000000000000 122222222111111 123456777777777777
Q ss_pred CHHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHH
Q 037409 414 NLGDALKLIDKMQLND-VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLF 492 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (603)
-.+.|..+|-+..+.+ +.++...++.++..+ ..|+...|..+|+--.... +.+..--+-.+..+...++-+.|..+|
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 7888888888887776 556667777777655 4577888888887655432 334444455666677778888888888
Q ss_pred HHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 493 HRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 493 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+..++. +..+ ..+|..++.--..-|+...+..+=+++.+.
T Consensus 490 etsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 490 ETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 865543 1112 456777777777778887777777777664
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.6e-05 Score=51.17 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++..+.+.|++++|.+.++++++..+. ++..+..++.++.+.|++++|..+|++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3577899999999999999999988765 99999999999999999999999999874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00061 Score=62.26 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhcCCccCCChhhHHHH
Q 037409 152 VTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVALKLFEEMVNEFGAICKPDVVTYNSI 230 (603)
Q Consensus 152 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 230 (603)
.+|..++....+.+..+.|+++|.+..+.+ .-+...|......-.. .++.+.|.++|+...+. .+.+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCCHHHHHHH
Confidence 467777777777777888888888877542 2233444444444233 45666688888888876 46677777788
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 231 IDGLCKDGFVDKAKELLLQMKDRNINPNV---ITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 231 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
+..+...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888887765 33222 46777777667777777777777776654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.015 Score=51.70 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDN--GVQPDVVTFNAMINYNCKDGKMDKVNRLLELM 320 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (603)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|......+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455556666666666555553 11222334445555555555555555544433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.4e-05 Score=51.52 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=31.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
...|++++|+++|+++.+.. |.+...+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566666666666666553 4455555666666666666666666666666544
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.1e-05 Score=44.03 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 037409 152 VTFNFLINGLCAEGRIMEAARLFKKLNVFACDP 184 (603)
Q Consensus 152 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 184 (603)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777776665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00062 Score=62.21 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK-MGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
.+|..+++..-+.+..+.|..+|.++.+.+ .....+|...+..-.. .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888888888888887553 3344555555555334 45666688888888776 34477778888888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNV---VTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
+...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887754 23222 46777777777888888888888777765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.8e-05 Score=43.72 Aligned_cols=30 Identities=40% Similarity=0.474 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 261 TYNSLICGFCCVDDWKEAKCLFIEMMDNGV 290 (603)
Q Consensus 261 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 290 (603)
+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444444333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0025 Score=49.01 Aligned_cols=93 Identities=17% Similarity=0.079 Sum_probs=56.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHH
Q 037409 440 YIDGLCKNGFVLEAVQVFQAIRNCKCELR--IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLC 515 (603)
Q Consensus 440 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 515 (603)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.....+.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777776654433 3455666677777777777777777776643321 1122233344566
Q ss_pred HcCChhHHHHHHHHHHH
Q 037409 516 KEGQMDKANDLLLDMEA 532 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~ 532 (603)
..|+.++|++.+-..+.
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 67777777777665554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00063 Score=64.62 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 290 VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.+.+......++..+....+++.+..++.+..... ...-+.|..++++.|.+.|..+.+++++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455566666666666666666666666665441 1122334456677777777777777777766666777777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (603)
+.|++.+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777777666665555555555554444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0051 Score=56.58 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=10.5
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 037409 373 ANCKDQKVEDAVCLYREML 391 (603)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~ 391 (603)
.|...+++++|.+.|.+..
T Consensus 44 ~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHH
Confidence 4555666666666665543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00068 Score=64.39 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 037409 185 NVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNS 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+......+++.+....+.+.+..++.+....... ...-..+..++++.|.+.|..++++.++..=...|+-||..+++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~-~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC-SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc-ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3344444444444444445555555444433111 111122333455555555555555555554444455555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMI 301 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 301 (603)
|++.+.+.|++..|.++...|...+...+..++..-+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 5555555555555555555444444333333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.063 Score=53.03 Aligned_cols=205 Identities=11% Similarity=0.058 Sum_probs=116.4
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHH----------HHHHHHhcCChhHHHHHHHHHhh
Q 037409 183 DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNS----------IIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
.|.+..|..+.......-.++.|...|-+...-. .+..... -...-.--|++++|+++|-++-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 5777788877777666666666666665443221 1111100 11122235788899988888776
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037409 253 RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG-VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVT 331 (603)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 331 (603)
+. ..+..+.+.|||-...++++.--... -..-...|+.+...+.....+++|.+.+..-...
T Consensus 763 rD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 763 RD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred hh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 52 23566677788877777765421100 0112346777777777777888888777653211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (603)
...+.++....++++-+.+-..+ +.+....-.+..++.+.|.-++|.+.|-+... | ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHH
Confidence 12344455555555544433333 33555566677777777777777766644321 1 123445666
Q ss_pred cCCHHHHHHHHHHH
Q 037409 412 VGNLGDALKLIDKM 425 (603)
Q Consensus 412 ~~~~~~a~~~~~~~ 425 (603)
.++|.+|.++-+..
T Consensus 891 LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHhc
Confidence 66777776665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0001 Score=50.84 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=46.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 550 VQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.|++++|.++++++.+..+. +..+...++.+|.+.|++++|.+++++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5789999999999999998775 89999999999999999999999999875
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00092 Score=60.94 Aligned_cols=132 Identities=11% Similarity=0.008 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCC-CChHHHHHHHHHHHhCCChhHHHHHHHHHhh----CCCC-CCHh
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIR----NCKCE-LRIETYNCLINGLCKMGRLKTACKLFHRLQH----KGPI-PDVV 505 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~ 505 (603)
.|..|...|.-.|+++.|+...+.-+ +.|-. ..-..+..+..++.-.|+++.|.+.++.... .|-. ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44555556666788888877665432 22211 1234677788888888888888888876543 2211 2334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK----N-CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+.-.|+..|.-..++++|+.++.+-+.. + ..-....+..|+.++...|..++|..+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556777787778888888887765432 1 122455677888888888888888888777654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.004 Score=58.81 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 037409 450 VLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLD 529 (603)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 529 (603)
..+|.+.-+...+.+ +.|+.....+..+..-.++++.|...|++....+|. ...+|...+..+...|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555554 455555555555555555666666666666665443 445555555555566666666666666
Q ss_pred HHHC
Q 037409 530 MEAK 533 (603)
Q Consensus 530 ~~~~ 533 (603)
.++.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=52.42 Aligned_cols=89 Identities=15% Similarity=-0.046 Sum_probs=66.5
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
.-+...|++++|..+|.-+.-.++. |..-|..|+.++-..+++++|+..|..+...+ ..|+..+...+.++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3345678888888888877776655 66667777777778888888888887776654 455666677788888888888
Q ss_pred HHHHHHHHHHH
Q 037409 557 KVVVLLHKMAA 567 (603)
Q Consensus 557 ~a~~~~~~~~~ 567 (603)
.|...++..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888888776
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00093 Score=59.82 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPSEVTFCTL 545 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 545 (603)
..|...+....+.|++++|...|+.+++..|... ...+-.++.+|...|++++|...|+++++.. -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4455555555667899999999999988655421 3467778888899999999999999998752 11235667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.++...|+.++|.++++++++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 88888899999999999998876554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00053 Score=62.43 Aligned_cols=131 Identities=14% Similarity=0.052 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCHh
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSK----GCR-HDVYSYNILINANCKDQKVEDAVCLYREMLS----ER-IRPSVI 400 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~ 400 (603)
.|..|.+.|.-.|+++.|+...+.-+.. |-. .....+..+.+++.-.|+++.|.+.|..... .| ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666667777888887666543321 211 1224566677778888888888887765432 11 112334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQL----N-DVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
+.-+|...|.-..++++|+.++.+-.. . +..-....+.+|..++...|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555677777777778888887765422 1 112244567778888888888888877665544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.064 Score=50.14 Aligned_cols=446 Identities=11% Similarity=0.068 Sum_probs=238.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 037409 102 SLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 181 (603)
++-++.... |.|...|..+++-+..+|.+++.+++++++..- ++--..+|...+.+-...+++.....+|.+....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k- 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK- 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence 444444433 778889999999999999999999999999764 2224557887787777788999999999998876
Q ss_pred CCCcHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhcCCccCCChhhHHHHHHH---HHhcCC------hhHHHHH
Q 037409 182 CDPNVVTFNTLINGLCRTRNT------LVALKLFEEMVNEFGAICKPDVVTYNSIIDG---LCKDGF------VDKAKEL 246 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~------~~~a~~~ 246 (603)
..+...|...+.-..+.+.. ..-.+.|+-.+.... ..+.....|+..+.. .-..|. ++...+.
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 44566777766655554321 223344554444211 112233344444332 223344 4455566
Q ss_pred HHHHhhCCCCCChhhHHH------HHHHH---HhcC----CHHHHHHHHHHHHHC--CCC----CCHHHHHH--------
Q 037409 247 LLQMKDRNINPNVITYNS------LICGF---CCVD----DWKEAKCLFIEMMDN--GVQ----PDVVTFNA-------- 299 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~------l~~~~---~~~~----~~~~A~~~~~~~~~~--~~~----~~~~~~~~-------- 299 (603)
+.++...-+..-...|+- =+... --.| -+..|...++++... |.. -+..+++.
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 666665322111112211 11100 0011 134455555555431 211 11122222
Q ss_pred ---HHHHHHhcC-----C--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 037409 300 ---MINYNCKDG-----K--MDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNI 369 (603)
Q Consensus 300 ---l~~~~~~~~-----~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
.|..-...| + .....-++++.... +...+..|.-.-.-+...++-+.|++........ .+..--.
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----spsL~~~ 338 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPSLTMF 338 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCchhee
Confidence 111111110 0 00111111111111 1111222222222233445555665554443322 2221112
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 037409 370 LINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ---VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK 446 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (603)
+-..|.-..+.+.....|+...+. ...--..+.+-+. .|+++.-.+++-.-+ ..-...|..++....+
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r 409 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLR 409 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHH
Confidence 223333344444444455544331 0000001111111 122322222211111 1134567778888888
Q ss_pred CCCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 037409 447 NGFVLEAVQVFQAIRNCK-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAND 525 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 525 (603)
..-++.|..+|-++.+.+ ..+++.++++++..++ .|+...|.++|+--...-+. +...-+-.+..+..-++-+.|..
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCcHHHHHH
Confidence 888999999999999887 5678888999998775 68889999999977665332 33333556667778899999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 526 LLLDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 526 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
+|++.+.. +..+ ..+|..++.--..-|+...+..+-+++...-+
T Consensus 488 LFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 488 LFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 99977654 2333 56788888888888999888888888876543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.046 Score=47.22 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----ChHHHHHHH
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL-----RIETYNCLI 476 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 476 (603)
.+.++..+.-.|.+.-...++++.++...+.++.....++..-.+.|+.+.|...|++..+..-.. +..+..+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345566666677777777888888777666677777777777778888888888888766532222 233333344
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
..|.-.+++..|.+.+.++...+.. |+...|.-.-+..-.|+..+|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555667788888888888776655 6666676666677778888888888888775
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00044 Score=48.43 Aligned_cols=59 Identities=8% Similarity=-0.000 Sum_probs=34.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..|.+.+++++|++.+++++..+ |.+...+...+.++.+.|++++|.+.+++.++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34555666666666666666654 444555555666666666666666666666655443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.003 Score=56.60 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CCHhHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL--RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PDVVTCSTMI 511 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~ 511 (603)
.|........+.|++++|...|+.+.+..... .+..+..++.+|...|++++|...|+.+.+..+. .....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455678888888888877654211 1356777888888888888888888888765332 1234455566
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.++...|+.++|..+|+++++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888888888888775
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0025 Score=58.61 Aligned_cols=93 Identities=8% Similarity=0.009 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
++..+..++.+.+++.+|++...+.+..+ ++|...+..-+.+|...|+++.|+..|+++++..+. +..+-..++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~--Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS--NKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHH
Confidence 34445555555555555555555555554 445555555555555555555555555555554433 444444444444
Q ss_pred HcCCcHHHH-HHHHHhh
Q 037409 586 SKDKKYREC-LNQFRHL 601 (603)
Q Consensus 586 ~~~g~~~eA-~~~~~~~ 601 (603)
.+..++.+. .++|.+|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 444433333 4444444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0021 Score=47.37 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 230 IIDGLCKDGFVDKAKELLLQMKDRNI-NPNVITYNSLICGFCCVD--------DWKEAKCLFIEMMDNGVQPDVVTFNAM 300 (603)
Q Consensus 230 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l 300 (603)
.|..+...+++.....+|+.+++.|+ -|+..+|+.++...++.. +.-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 666666666666555432 123445556666666666666666665
Q ss_pred HHHHH
Q 037409 301 INYNC 305 (603)
Q Consensus 301 ~~~~~ 305 (603)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0002 Score=40.00 Aligned_cols=26 Identities=46% Similarity=0.827 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 262 YNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 262 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.019 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=9.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNS 109 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~ 109 (603)
+..+...|++.+|+..|+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~ 33 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLID 33 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.012 Score=47.38 Aligned_cols=88 Identities=13% Similarity=-0.035 Sum_probs=68.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
-+...|++++|..+|+-+.-.+ +.+..-+..|..++-..+++++|...|......++. |+..+-..+.++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3457788888888888877655 456777788888888888888888888877665543 55556667888888888888
Q ss_pred HHHHHHHHHH
Q 037409 523 ANDLLLDMEA 532 (603)
Q Consensus 523 A~~~~~~~~~ 532 (603)
|...|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888888887
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.014 Score=48.69 Aligned_cols=194 Identities=13% Similarity=-0.008 Sum_probs=112.3
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKM 129 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (603)
|=++.+..+-|-.+-|+--|.+.+...|. -+.++|-++--+...|+++.|.+.|+...+.+ |....+...-+-.+.--
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeec
Confidence 33444455567778888888888887765 57788888888899999999999999998876 44444444444445567
Q ss_pred CCcchHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 037409 130 GITSGAFVVLGRILRSCFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKL 208 (603)
Q Consensus 130 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 208 (603)
|++.-|.+-+.+..+.++. |-...|..+.. +.-++.+|..-+.+--+ ..|..-|...+..+.- |+.. ...+
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l 218 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETL 218 (297)
T ss_pred CchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHH
Confidence 8888888877777666433 22334443332 23466666654433222 2344555544433321 2211 1122
Q ss_pred HHHHHHhcC---CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 209 FEEMVNEFG---AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 209 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
++.+..... ...+.-..+|--+...+...|+.++|..+|+-....
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333332110 000011345556666667777777777777666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00022 Score=39.82 Aligned_cols=29 Identities=45% Similarity=0.806 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRN 254 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 254 (603)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.004 Score=45.97 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHH
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDNGV-QPDVVTFNAMINYNCKDG--------KMDKVNRLLELMIQRGVNPDTVTYN 333 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 333 (603)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345555566888888888888888888 788888888887766543 2334556667777777777777777
Q ss_pred HHHHHHH
Q 037409 334 SLMDGFC 340 (603)
Q Consensus 334 ~l~~~~~ 340 (603)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 7766554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.12 Score=48.46 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=87.2
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHH---HHhCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHH----HHHh---CCChh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDG---LCKNGF-VLEAVQVFQAIRNCKCELRIETYNCLIN----GLCK---MGRLK 486 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~ 486 (603)
-+.+|......++. .......++.+ +-+.|. -++|+.+++.+.+.. +-|...-|.+.. +|.. ...+.
T Consensus 361 yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~ 438 (549)
T PF07079_consen 361 YLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIP 438 (549)
T ss_pred HHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 35556666554433 11222223222 333444 788888888888643 444444333322 2221 22334
Q ss_pred HHHHHHHHHhhCCCCC----CHhHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 487 TACKLFHRLQHKGPIP----DVVTCSTMIHW--LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
.-..+-+-+.+.|+.| +...-|.+..+ +..+|++.++.-.-.-+.+ +.|++.++..++-+.....++++|..
T Consensus 439 rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 439 RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444445556654 33445556555 5578999998877776666 56899999999999999999999999
Q ss_pred HHHHHH
Q 037409 561 LLHKMA 566 (603)
Q Consensus 561 ~~~~~~ 566 (603)
+++.+-
T Consensus 517 ~l~~LP 522 (549)
T PF07079_consen 517 YLQKLP 522 (549)
T ss_pred HHHhCC
Confidence 887754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0026 Score=55.51 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-C-CCCHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-C-VPSEVTFCTLL 546 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~ 546 (603)
.|+.-+.. .+.|++..|...|...++..|.- ....+-.|+.++...|++++|..+|..+.+.- - +.-+..+..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 35666777777777777654331 12234456667777777777777777766542 0 11245666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+..+.|+.++|..+|+++.++-+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 7777777777777777777765443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00053 Score=48.00 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
...|.+.+++++|.+++++++..++. ++..+...+.++.+.|++++|.+.+++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46789999999999999999997765 88999999999999999999999999875
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.028 Score=48.70 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=25.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 037409 122 LINCLCKMGITSGAFVVLGRILRSCFTPN--TVTFNFLINGLCAEGRIMEAARLFKKLNV 179 (603)
Q Consensus 122 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 179 (603)
.+..+...|++.+|...|+.+....+... ..+...++.++.+.|++++|...+++..+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555555554422211 12333344455555555555555555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0006 Score=48.47 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK--NCVPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+++.++.+|...|++++|+..++++++. ...++ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555554432 00111 2233444444444555555554444443
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.066 Score=52.37 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
.++...+...+.+...+.-|.++|.+|-+ ...+.......++|++|..+.++.-+. .|| +|...++-
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHH
Confidence 34455555555566677777777777753 124455667778888888777766542 233 34445555
Q ss_pred HHhcCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHK 564 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~ 564 (603)
+++..++++|.+.|.+
T Consensus 814 LAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 6666666666554433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.012 Score=44.46 Aligned_cols=94 Identities=6% Similarity=-0.084 Sum_probs=74.7
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHh
Q 037409 52 NDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLF---VLNLLINCLCK 128 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 128 (603)
.+-..+..|++++|++.|.+++..-|. +..+||.-..++--+|+.++|++-++++++..-+.... .|..-...|..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 333445679999999999999998765 78889999999999999999999999998863232322 34444557888
Q ss_pred cCCcchHHHHHHHHHHCC
Q 037409 129 MGITSGAFVVLGRILRSC 146 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~ 146 (603)
.|+-+.|+.-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 899999999998888876
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.018 Score=46.95 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA-----AEKLVVSDLSLS 578 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 578 (603)
+...++..+...|++++|++++++++... |-+...+..++.+|...|+..+|.+.|+++. +.|+. |++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~-Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE-PSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC-cCHHHH
Confidence 45667777888899999999999999876 6678889999999999999999999988875 35777 766654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.025 Score=55.92 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHH-HHHHHHHHcCChhHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCS-TMIHWLCKEGQMDKANDLLLDMEAKN--C-VPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
.+.+.|.++++.+.+. -|+...|. .-++.+...|+.++|++.|+++.... . +.....+.-+++.+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3556666666666664 23433333 23344556666667766666554311 0 11233455566666666777777
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcH-------HHHHHHHHhhc
Q 037409 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY-------RECLNQFRHLL 602 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~eA~~~~~~~l 602 (603)
...+.++.+.+-- .....+...+-++...|+. ++|.+++++++
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777666654332 1222233344455566666 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.21 Score=46.38 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 037409 367 YNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK 446 (603)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (603)
.+.-+.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-..+.+. .-++.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444555555555555544432 24555555666666666666555543321 1123455555666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 447 NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.|+..+|..+...+ + +..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 66666655554431 1 13344455555665555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.15 Score=44.24 Aligned_cols=130 Identities=15% Similarity=0.050 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH-----H
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI-----D 442 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 442 (603)
+.++.++.-.+.+.-....+++.++...+.++.....+++.-.+.|+.+.|...|+...+..-..+..+.+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444455555555555555555444455555555555555566666665555444322222222222211 2
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
.+.-.+++..|...+.++...+ +.++...|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333445555555555555443 334444444444444455556666666655553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.028 Score=45.79 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA-----KNCVPSEVTFC 543 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 543 (603)
.+...++..+...|++++|...++.+...+|- |...|..++.+|...|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 35566777788899999999999999998776 888999999999999999999999988753 48888877643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.41 Score=48.82 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD--LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGL 161 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (603)
....+..+.+...++-|+.+.+.- +..++ .......+.-+.+.|++++|...|-+.+.. .+|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 345677777888888888775443 22222 123444455667889999998888666543 2222 245556
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
....+..+-..+++.+.+.|+. +..--..|+.+|.+.++.++-.+..+... .+ . -..-....+..+.+.+-.+
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g---~--~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KG---E--WFFDVETALEILRKSNYLD 480 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cc---c--eeeeHHHHHHHHHHhChHH
Confidence 6777777888888888888744 44445678899999999887666655443 11 0 0112445677777777777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
+|..+-..... .......++ -..+++++|+..+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77766655433 233333333 3568888898888765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.38 Score=48.39 Aligned_cols=338 Identities=11% Similarity=0.072 Sum_probs=155.5
Q ss_pred cCCCCcHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh--hHHHHHH-HHHh
Q 037409 180 FACDPNVVTFN-----TLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV--DKAKELL-LQMK 251 (603)
Q Consensus 180 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~-~~~~ 251 (603)
.|++-+..-|. .++.-+...+.+..|+++-+.+.... . .+...|......+.+..+. +++.+.. +++.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~---~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE---S-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc---c-cccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 35555555554 34566677788888888877765432 1 1244555556555555322 2222222 2332
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037409 252 DRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ----PDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP 327 (603)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 327 (603)
.. . ....+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+...-
T Consensus 502 ~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--- 576 (829)
T KOG2280|consen 502 AK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--- 576 (829)
T ss_pred cc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---
Confidence 21 1 34566777777777888888888777542221100 011122233444445555555555444443320
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH--HHHh----CCCCCCHhh
Q 037409 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR--EMLS----ERIRPSVIT 401 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~----~~~~~~~~~ 401 (603)
+...+. ....+...|..+|.+..++. +.. .+-..|.. ++-..++..|. .... .+..|+
T Consensus 577 ~~s~l~------~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~--- 640 (829)
T KOG2280|consen 577 NRSSLF------MTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA--- 640 (829)
T ss_pred HHHHHH------HHHHhchhhhHHHHHHHHhh---chh---hhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---
Confidence 111111 11123344555555555431 111 11112222 22222222211 1000 111122
Q ss_pred HHHHHHHHHhcCCHHH----------HHHHHHHHh-hCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChH
Q 037409 402 YNTLLSGLFQVGNLGD----------ALKLIDKMQ-LNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE 470 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~----------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 470 (603)
.......+.+.....- -+.+.+.+. +.+..-...+.+--+.-+...|+..+|.++-.+.. -|+-.
T Consensus 641 lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr 716 (829)
T KOG2280|consen 641 LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKR 716 (829)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchh
Confidence 2222333333222111 111111111 11211222233344445556677777766655443 45666
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.|..-+.+++..+++++-+++-+... ++.-|.-...+|.+.|+.++|..++-+.... . -...+|.
T Consensus 717 ~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~ 781 (829)
T KOG2280|consen 717 LWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYL 781 (829)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHH
Confidence 66666667777777766665544443 2334555666677777777777666554321 1 3445666
Q ss_pred hcCCHHHHHHH
Q 037409 551 QNNKKSKVVVL 561 (603)
Q Consensus 551 ~~g~~~~a~~~ 561 (603)
+.|++.+|.+.
T Consensus 782 ~~~~~~eAad~ 792 (829)
T KOG2280|consen 782 RVGDVKEAADL 792 (829)
T ss_pred HhccHHHHHHH
Confidence 66666666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.12 Score=45.92 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=102.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
.....|++.+|...|+...... +.+......++.+|...|+.+.|..++..+..............-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556788888888888887655 445677778888888888888888888887654222222222233445555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 523 ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
...+-++.-.. +.|...-..++..+...|+.++|.+.+=.+++++..-.+...-..++.++..-|.-+.+...++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55555555442 4477777788888888899988888877777554333477777788888887775554444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.1 Score=46.30 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=80.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRI 167 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 167 (603)
.......|++.+|...|..+.... +-+......++.+|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344566777777777777776654 3345556666677777777777777776665442221122212223334444444
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
.+...+-.+.... +.|...-..+...+...|+.++|.+.+-.+++.+. -..|...-..++..+...|..+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~--~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR--GFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--cccCcHHHHHHHHHHHhcCCCC
Confidence 4444433333331 22555556666666677777777776666665532 1233444555555555555333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.38 Score=48.35 Aligned_cols=368 Identities=13% Similarity=0.080 Sum_probs=194.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHhc-----CCccCCChhhH-----HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEF-----GAICKPDVVTY-----NSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYN 263 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 263 (603)
.++.+..++++-..+.+.+.-.+ +.+.+.+..-| ..++.-+...+.+..|.++-..+...-.. ....|.
T Consensus 397 k~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~ 475 (829)
T KOG2280|consen 397 KASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLL 475 (829)
T ss_pred ccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHH
Confidence 34445556666555554443221 11133333333 34566677778888888887776543222 256666
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhhHHHHHH
Q 037409 264 SLICGFCCVDDW--KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN----PDTVTYNSLMD 337 (603)
Q Consensus 264 ~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 337 (603)
.....+.+..+. +++++..++=+.... -+-.+|..+.......|+.+-|..+++.=...+.. .+..-+...+.
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 667766666332 233333333222212 23456777777777888888888877653222111 01111223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGD 417 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (603)
-+...|+.+....++-.+..+- +... .+.-..+...|..+|.+..+.. +.. .+-+.|....+...
T Consensus 555 kaies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~ 619 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQA 619 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhh
Confidence 3444555555554444443320 1111 1111234445566666555431 111 12222333233222
Q ss_pred HHHH-HHHHhh-CCCCCCHHhHHHHHHHHHhCCCHH---HH-------HHHHHHHHH-cCCCCChHHHHHHHHHHHhCCC
Q 037409 418 ALKL-IDKMQL-NDVVPDSFTFATYIDGLCKNGFVL---EA-------VQVFQAIRN-CKCELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 418 a~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 484 (603)
.-.+ ++.... ..+.+-..........+.+..... +| +.+.+.+.. .+..-..-+.+.-+.-+...|+
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~ 699 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ 699 (829)
T ss_pred hhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc
Confidence 2211 111100 001111222333444444433311 11 222222222 2323334455666667788899
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
..+|.++-.+.. -||...|..-+.+++..++|++-+++-+... ++.-|.....+|.+.|+.++|.+++-+
T Consensus 700 ~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 700 NKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred hHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 999999877776 3688899999999999999988766655443 255677888999999999999988865
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 565 MAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 565 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
.-. .. ..+.+|.+.|++.||.+.-
T Consensus 770 v~~------l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 770 VGG------LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cCC------hH----HHHHHHHHhccHHHHHHHH
Confidence 431 11 5788999999999997653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.17 Score=44.06 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNG--LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
..|-.-+..-.+.|++++|.+.|+.+.... -+....+...++-++.+.++++.|+..+++.++..+......|-..+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344444555566777777777777776553 112233455556666777777777777777776654433334444444
Q ss_pred HHH
Q 037409 160 GLC 162 (603)
Q Consensus 160 ~~~ 162 (603)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.27 Score=45.74 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLV 342 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (603)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... .-.+.-|..++..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444445555555555544432 34555555555555555555554443221 11234455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 037409 343 GRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCL 386 (603)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 386 (603)
|+..+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 5555555544441 113344455555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.031 Score=43.94 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=23.4
Q ss_pred HhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+.|++++|.+.|+.+...-+.. ....--.++.+|.+.|++++|+..+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34445555555555444432211 1222333444444455555555555544444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.021 Score=48.06 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 037409 310 MDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVG 343 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (603)
-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 3456667777777777777777777766665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.32 Score=45.65 Aligned_cols=76 Identities=14% Similarity=0.023 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 369 ILINANCKDQKVEDAVCLYREMLSER---IRPSVITYNTLLSGLFQ---VGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|+.++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33344555666666666666655431 11111111222333444 5666666666665444344455555555555
Q ss_pred HH
Q 037409 443 GL 444 (603)
Q Consensus 443 ~~ 444 (603)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=45.52 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCC-HHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVSD-LSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
++..++.+|...|++++|+..++++++. +...|. ..++..++.++...|++++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444444421 111011 23444444444444444444444444
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.027 Score=47.42 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=63.8
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----------------CCHHHHHHH
Q 037409 223 DVVTYNSIIDGLCK-----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV----------------DDWKEAKCL 281 (603)
Q Consensus 223 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~A~~~ 281 (603)
+..+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44455555555543 344555555566666666666666666666655321 234678999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 037409 282 FIEMMDNGVQPDVVTFNAMINYNCKDGK-MDKVNRLLELM 320 (603)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~ 320 (603)
+++|...|+-||..++..++..+.+.+. ..+..+++-.|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999987765 33344443333
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.02 Score=52.87 Aligned_cols=98 Identities=15% Similarity=0.053 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...++++..+|.+.+++..|+....+.++.++. |...+-.-+.++...|+++.|+..|+++++.. |.|..+-..|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 346788888999999999999999999998765 88888888999999999999999999999964 4455555556555
Q ss_pred HHhcCCH-HHHHHHHHHHHHC
Q 037409 549 FVQNNKK-SKVVVLLHKMAAE 568 (603)
Q Consensus 549 ~~~~g~~-~~a~~~~~~~~~~ 568 (603)
--+.... ++..++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 5444444 4557888888754
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.48 Score=46.51 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDL-FVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLI 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 158 (603)
+...|..++.---...+.+.+..++..++.. -|-. -.|......-.+.|..+.+..+|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665444444555566666666643 2322 24444455556667777777777766654 334555555554
Q ss_pred HHHH-hcCCHhHHHHHHHHHHhc-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 159 NGLC-AEGRIMEAARLFKKLNVF-ACD-PNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 159 ~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
..+. ..|+.+.....|+..... |.+ .+...|...+..-...+++.....+++.+++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4333 345666666666665542 211 23345666666666666666666666666653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.083 Score=50.33 Aligned_cols=158 Identities=10% Similarity=0.074 Sum_probs=109.5
Q ss_pred hhhhhhhccCC---CHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCC
Q 037409 50 FLNDRHKSGNI---TSNEAVYFFDCMI---KMKPSPGMTSFTILLTMLAK---------NKQYDTVVSLFKRLNSNGLFP 114 (603)
Q Consensus 50 ~l~~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 114 (603)
+++++.....+ +.+.|+.+|.+++ ..+|. ...+|..+...+.. ..+..+|....+++++.+ +.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~ 336 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV 336 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC
Confidence 56666443333 4568999999999 65554 34555544444332 234567788888888887 78
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHH---HHH
Q 037409 115 DLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVT---FNT 191 (603)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~ 191 (603)
|+.+...++.+..-.++++.|..+|++.....+. ...+|........-+|+.++|.+.+++..+. .|.... ...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~ 413 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKE 413 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHH
Confidence 9999999999888889999999999999988544 4556666666677799999999999997765 443322 222
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 037409 192 LINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
.+..|+. ...+.|+++|-+-.
T Consensus 414 ~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 414 CVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHcC-CchhhhHHHHhhcc
Confidence 3335554 44677777765543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.24 Score=46.54 Aligned_cols=164 Identities=9% Similarity=-0.025 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCC---CCCCHhhHHHHHHHHHh---cCCHhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 037409 120 NLLINCLCKMGITSGAFVVLGRILRSC---FTPNTVTFNFLINGLCA---EGRIMEAARLFKKLNVFACDPNVVTFNTLI 193 (603)
Q Consensus 120 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
..++-+|....+++.-+++.+.+.... ......+--..+-++.+ .|+.++|++++..+......++..+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666666666666665541 11122222333444445 566666666666644333355556666555
Q ss_pred HHHHh---------cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh-h---HHHHHH---H-HHhhCC--
Q 037409 194 NGLCR---------TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV-D---KAKELL---L-QMKDRN-- 254 (603)
Q Consensus 194 ~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~---~a~~~~---~-~~~~~~-- 254 (603)
+.|-. ....++|+..|.+.-+. .++...--.++..+...|.. + +..++- . .+.+.|
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-----~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI-----EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC-----CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 54432 12356777777777664 24433322233333333321 1 112222 1 122233
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 255 -INPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 255 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
-..+-..+.+++.+..-.|+.++|.+..++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2234555677788888888999999988888876
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0054 Score=57.90 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=57.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS-E---VTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+...|+.++.+|...|++++|+..|++.++.+ |+ . .+|..++.+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57789999999999999999999999999975 55 3 35999999999999999999999999985
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.15 Score=50.10 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=52.9
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHh--------
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVV-------- 505 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------- 505 (603)
..+...+...+.+...+.-|.++|..+-+. ..++......+++.+|..+.++..+. .||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 334444444555556666677776665432 24555666677777777777766653 22321
Q ss_pred ---HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 506 ---TCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 506 ---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
-|...-.+|.+.|+-.+|.++++++...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233345667778888888888877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.021 Score=54.04 Aligned_cols=65 Identities=12% Similarity=-0.079 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDL---FVLNLLINCLCKMGITSGAFVVLGRILRS 145 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 145 (603)
+...|+.+..+|.+.|++++|+..|+++++.+ +.+. .+|..+..+|...|++++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555443 2222 23455555555555555555555555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.34 Score=43.34 Aligned_cols=226 Identities=18% Similarity=0.106 Sum_probs=147.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 037409 342 VGRISRARELFVSMVSKGCRH-DVYSYNILINANCKDQKVEDAVCLYREMLSE-RIRPSVITYNTLLSGLFQVGNLGDAL 419 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 419 (603)
.+....+...+.......... ...........+...+....+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355666666666666553221 2455666777788888888888888777652 22335556666677777778888888
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHH-HHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037409 420 KLIDKMQLNDVVPDSFTFATYID-GLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLINGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (603)
..+.........+. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 88888776544431 12222222 67788888888888888765221 1233444445555667788888888888888
Q ss_pred hCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 497 HKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 497 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
..........+..+...+...++++.|...+....... +.....+..+...+...|..+++...+++.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 75322135667777778888888888888888888753 2234555556666666677888888888877643
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.68 Score=45.53 Aligned_cols=118 Identities=9% Similarity=0.030 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCcchHHHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCL-CKMGITSGAFVVL 139 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~ 139 (603)
+.+.++..++.++..-|. ----|......=.+.|..+.+.++|++.+. +++.+...|...+..+ ...|+.+..+..|
T Consensus 60 ~~~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 457788888888876543 233577777777889999999999999985 4566777777666544 3567777788888
Q ss_pred HHHHHC-CCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 037409 140 GRILRS-CFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVF 180 (603)
Q Consensus 140 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 180 (603)
+++... |.. .+...|...+..-..++++.....+++++.+.
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 887764 211 24567888888888899999999999999864
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.043 Score=49.68 Aligned_cols=228 Identities=7% Similarity=-0.001 Sum_probs=127.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHhCC-CCCCHhhHHHHHHHHHh
Q 037409 339 FCLVGRISRARELFVSMVSKG--CRHDVYSYNILINANCKDQKVEDAVCLY----REMLSER-IRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~ 411 (603)
+...++.++|+..+.+.+.+- ...--.++..+..+.+..|.+++++..- +-..+.. -..-...|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887776641 1112234555666777777777665432 2222210 00011234444445555
Q ss_pred cCCHHHHHHHHHHHhh-CCCCCC---HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---C--CChHHHHHHHHHHHhC
Q 037409 412 VGNLGDALKLIDKMQL-NDVVPD---SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---E--LRIETYNCLINGLCKM 482 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~ 482 (603)
..++.+++.+-+.-.. .|..|. ......+..+....+.++++++.|+...+.-. . ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555555555443332 222221 12333455566666778888888887764211 1 1235677788888888
Q ss_pred CChhHHHHHHHHHhhC----CCCCCH------hHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHK----GPIPDV------VTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVP-SEVTFCTLLR 547 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~----~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~ 547 (603)
.++++|.-+..++.+. ++. |. .+.-.|.-++...|+.-+|.+.-++..+. |-.+ .......++.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 8888887777666542 222 21 12233445666778777777777766543 3122 2334556777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037409 548 GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (603)
.|...|+.+.|..-|+.+..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 78888888888777777763
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.046 Score=41.51 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=54.2
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCC
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE---VTFCTLLRGFVQNNK 554 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 554 (603)
+....|+++.|++.|.+.+..-|+ +...||.-..++.-+|+.++|++-++++++..-+... ..|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445566666666666666665444 5666666666666667777776666666665212221 123334445666666
Q ss_pred HHHHHHHHHHHHHCC
Q 037409 555 KSKVVVLLHKMAAEK 569 (603)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (603)
.+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 667766666666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.062 Score=48.18 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=77.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHhCCCHH
Q 037409 376 KDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS----FTFATYIDGLCKNGFVL 451 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 451 (603)
..|+..+|...++++++. .+.|...+...=.+|...|+.+.-...++++... ..++. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 355566666666666654 3335555555556666666666666666665432 11221 11122223344566666
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC----CCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI----PDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
+|++.-++..+.+ +.|.-.-.+....+...|++.++.++..+-... .+ .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 6666666665544 445555555666666666666666665544321 11 00111222233344556666666666
Q ss_pred HH
Q 037409 528 LD 529 (603)
Q Consensus 528 ~~ 529 (603)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.075 Score=47.67 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=76.1
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHhcCC
Q 037409 126 LCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTF----NTLINGLCRTRN 201 (603)
Q Consensus 126 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 201 (603)
+...|+..+|...++++++..++ |...++..=.++...|+.+.-...++++.-.- .+|...| ..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 34455566666666666555332 55555555555555666665555555554321 1222111 122233445566
Q ss_pred hHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCCHHHH
Q 037409 202 TLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR---NINPNVITYNSLICGFCCVDDWKEA 278 (603)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A 278 (603)
+++|.+.-++..+.+ +.|...-.++...+.-.|+..++.+...+-... +.-.-...|--..-.+...+.++.|
T Consensus 191 y~dAEk~A~ralqiN----~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN----RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred chhHHHHHHhhccCC----CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 666666666665543 345555555555566666666666655443221 1111122333334444555666666
Q ss_pred HHHHHH
Q 037409 279 KCLFIE 284 (603)
Q Consensus 279 ~~~~~~ 284 (603)
+++|+.
T Consensus 267 leIyD~ 272 (491)
T KOG2610|consen 267 LEIYDR 272 (491)
T ss_pred HHHHHH
Confidence 666654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.27 Score=48.76 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC---CCCCHhHHHHHHHHHHHcCChhHH
Q 037409 447 NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG---PIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
..+.+.|.++++.+.+.- |....-...-.+.+...|++++|.+.|++..... .+.....+-.+++++.-..+|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 456788888888888643 3333334445566777899999999998766421 112344566778888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCH-------HHHHHHHHHHH
Q 037409 524 NDLLLDMEAKNCVPSEVTFCTL-LRGFVQNNKK-------SKVVVLLHKMA 566 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~~~ 566 (603)
...|..+.+.+ ..+..+|..+ +.++...|+. ++|.+++++..
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999999875 4555555444 3445677877 88888888775
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0074 Score=36.87 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
++..++.+|.+.|++++|.++++++++..+. ++..+..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD--DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--CHHHHHHhh
Confidence 4455556666666666666666666655443 455444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.096 Score=41.23 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHH
Q 037409 78 SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG--LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFN 155 (603)
Q Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (603)
..+...+..-+....+.|++++|.+.|+.+...- -+-...+-..++-++.+.++++.|...+++.++..+......|-
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3344455555666777888888888888877652 02233455667777888888888888888888876654444455
Q ss_pred HHHHHHHh
Q 037409 156 FLINGLCA 163 (603)
Q Consensus 156 ~l~~~~~~ 163 (603)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 55555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.38 Score=46.19 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPI-PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
..+..++.+.|+.++|.+.++++.+..+. .+......|+.++...+.+.++..++.+..+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44555555666666666666666553222 12334555666666666666666666665443
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.15 Score=46.46 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=137.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---cchHHHHHHHHHh
Q 037409 304 NCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK--GCRHD---VYSYNILINANCK 376 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 376 (603)
+....+.++++..+...+.+- ......++..+..+.++.|.+++++..--..+.. ..... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887766541 1112345667778888888877766543222211 00111 1233444444544
Q ss_pred cCChHHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHhC
Q 037409 377 DQKVEDAVCLYREMLSE-RIRP---SVITYNTLLSGLFQVGNLGDALKLIDKMQLND-----VVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 447 (603)
..++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.- ......++..+...+.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 45555555544433332 2222 11233456677788889999999999875421 112345677888889999
Q ss_pred CCHHHHHHHHHHHHH----cCCCCChH-----HHHHHHHHHHhCCChhHHHHHHHHHhhC----CCCC-CHhHHHHHHHH
Q 037409 448 GFVLEAVQVFQAIRN----CKCELRIE-----TYNCLINGLCKMGRLKTACKLFHRLQHK----GPIP-DVVTCSTMIHW 513 (603)
Q Consensus 448 g~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~ 513 (603)
.++++|.-+..+..+ .++..-.. +..-+.-++...|++-.|.+..++..+. |-.+ .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999888776553 23222122 2233445677888888888888876653 3221 23345667788
Q ss_pred HHHcCChhHHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~ 532 (603)
|...|+.+.|..-|+++..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999988887654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.08 Score=46.51 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMI 511 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 511 (603)
.|+..+.. .+.|++..|...|...++... .-.+..+-+|+.++...|++++|..+|..+.+.-++- -+..+--++
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444333 355666666666666665321 1124455566666666666666666666666542221 134455556
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+..+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666665
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.2 Score=41.44 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=41.8
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
..+..+|++++|+.-++.....-..-+ ..+--.|.......|.+++|+..++.....+ -.......-+.++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCc
Confidence 344555555555555555443211101 1111223344555555555555555544322 122223344555555555
Q ss_pred HHHHHHHHHHHHHCC
Q 037409 555 KSKVVVLLHKMAAEK 569 (603)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (603)
.++|+.-|++.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 555555555555543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.67 Score=39.94 Aligned_cols=208 Identities=10% Similarity=0.079 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (603)
.|..-..+|-...++++|...+..+.+.. ..+... +.....++.|..+.+++.+. .--+..++.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34444556667778888888777776321 112111 22233445555555555543 112335566666777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC--ccCCChhhHHHHHHHHHhcCCh
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA--ICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
.+|.++.|-..+++.-+. ...-++++|+++|++....... ..+.-...+....+.+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 888877777777665431 1234555566666555433100 0011122334444556666666
Q ss_pred hHHHHHHHHHhhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 037409 241 DKAKELLLQMKDR-----NINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG---VQPDVVTFNAMINYNCKDGKMDK 312 (603)
Q Consensus 241 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 312 (603)
++|-..+.+-... ....-...|...|-.|....|+..|...++..-+.+ -+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6665544332211 011111234455555666677777777777644332 122344555666655 3456665
Q ss_pred HHHHH
Q 037409 313 VNRLL 317 (603)
Q Consensus 313 a~~~~ 317 (603)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.38 Score=36.90 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=48.0
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+....+..+..+..+|+-+.-.+++..+.+.+ .+++..+..++.+|.+.|+..++.++++++.+.|+.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445666777888888888888888887654 788888889999999999999999999999888865
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.27 Score=39.73 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=68.1
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHH--HH
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSP-GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLF-VLNLL--IN 124 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~ 124 (603)
.|+.+.-....+..++|+.-|......+-.. .+-..........+.|+...|...|++.-.....|-.. ....| .-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3555554456677777777777765544321 12223334445667777777777777776543222221 11111 11
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 037409 125 CLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNV 179 (603)
Q Consensus 125 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 179 (603)
.+...|.|++.....+.+...+-+.....-..|.-+-.+.|++.+|.++|..+..
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445566665555555544433333333444555555566666666666666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.88 Score=40.57 Aligned_cols=225 Identities=18% Similarity=0.083 Sum_probs=151.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 307 DGKMDKVNRLLELMIQRGVNP-DTVTYNSLMDGFCLVGRISRARELFVSMVSK-GCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
.+....+...+.......... ...........+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355666666666666553321 2456667777788888888888888887752 22334455666667777788888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHhhCCC--CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 385 CLYREMLSERIRPSVITYNTLLS-GLFQVGNLGDALKLIDKMQLNDV--VPDSFTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887754333 222223333 67888999999999988855322 1233344444444667788899998888888
Q ss_pred HcCCCC-ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 462 NCKCEL-RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 462 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
... +. ....+..+...+...++++.|...+.......+. ....+..+...+...+..+++...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 754 33 4677888888888888889999988888875332 24455555555556677888888888888753
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.42 Score=36.67 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
....+..+...|.-+.-.+++.++.+.+ ++++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344445555555555555555555422 45555555556666666666666666555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.023 Score=34.67 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
|..+...|...|++++|+++|+++++.. |.|...+..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 4444555555555555555555555543 3334444333
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.06 E-value=4.2 Score=47.33 Aligned_cols=319 Identities=9% Similarity=0.035 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 264 SLICGFCCVDDWKEAKCLFIEMMDNGV--QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL 341 (603)
Q Consensus 264 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
.+..+-.+++.+.+|.-.++.-..... .-....+..+...|...+++|....+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 455566788899999999888411110 11223344444589999999988877764111 22233 33445778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcCCHHHHHH
Q 037409 342 VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL-LSGLFQVGNLGDALK 420 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 420 (603)
.|++..|...|+.+.+.+ ++....++.++......|.++..+...+-.... ..+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 334667887887777888888888766655443 22233333332 333356677776666
Q ss_pred HHHHHhhCCCCCCHHhHHH--HHHHHHhC--CCHHHHHHHHHHHHH--------cCCC-CChHHHHHHHHHHHhCCChhH
Q 037409 421 LIDKMQLNDVVPDSFTFAT--YIDGLCKN--GFVLEAVQVFQAIRN--------CKCE-LRIETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~a~~~~~~~~~--------~~~~-~~~~~~~~l~~~~~~~g~~~~ 487 (603)
... .. +..+|.. ++....+. .+.-.-.+..+.+.+ .... .-...|..++..+.-..- +.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-EN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HH
Confidence 554 11 1111111 22222221 111111112222221 1111 111334444443332211 11
Q ss_pred HHHHHHHHhh-CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH-HHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 488 ACKLFHRLQH-KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLD-MEAKNCV-----PSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 488 A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
-.+.+..... ....-+..-|..-+.--....+..+-+--+++ +...... .-..+|...++.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111110 00111112222222211111122222222222 2222112 235678888998889999999988
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 561 LLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+-++.+.+ -++++...++.++..|+-..|+.++++.+
T Consensus 1692 all~A~e~r----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1692 ALLNAKESR----LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHhhhhcc----cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 887777655 34677788899999999999999988765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.2 Score=40.83 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVL---EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIH 512 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 512 (603)
++..++.++...+..+ +|..+++.+.+. .+..+.++..-+..+.+.++.+.+.+.+.+|...-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4555666666665543 445555555432 2334555555566666677888888888888775221 2233444444
Q ss_pred HH---HHcCChhHHHHHHHHHHHCCCCCCHH-HHHH--HHHHH--HhcCC------HHHHHHHHHHHHHCCCCCCCHHHH
Q 037409 513 WL---CKEGQMDKANDLLLDMEAKNCVPSEV-TFCT--LLRGF--VQNNK------KSKVVVLLHKMAAEKLVVSDLSLS 578 (603)
Q Consensus 513 ~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~--l~~~~--~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~ 578 (603)
.+ ... ....|...+..++...+.|... .... +...+ ...++ .+....++....+....+.+..+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 43 332 3345666665555443344433 1111 11111 12111 333333444322221111233322
Q ss_pred HHH-------HHHHHcCCcHHHHHHHHH
Q 037409 579 SKV-------VDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 579 ~~l-------~~~~~~~g~~~eA~~~~~ 599 (603)
..+ +....++++|++|.++|+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 222 344567899999999988
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.011 Score=33.52 Aligned_cols=32 Identities=13% Similarity=0.446 Sum_probs=27.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037409 69 FDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVV 101 (603)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 101 (603)
|+++++.+|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 6677887776 8899999999999999999886
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.4 Score=43.63 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=45.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCCHHHHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA----AEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~ 584 (603)
-++..+.+..+.+.++.+.+..-+ .++..|..++..+.+.+..+.-.++..+.+ ....- |- ..++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~i-pp----l~VL~~ 780 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERI-PP----LHVLQI 780 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccC-CH----HHHHHH
Confidence 345566677777777777666543 477888888888888886655444444443 33333 22 335666
Q ss_pred HHcCCc
Q 037409 585 LSKDKK 590 (603)
Q Consensus 585 ~~~~g~ 590 (603)
+.+.+.
T Consensus 781 Lakn~~ 786 (933)
T KOG2114|consen 781 LAKNGT 786 (933)
T ss_pred HhcCCc
Confidence 776654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0087 Score=33.96 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=21.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 562 LHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
++++++.+|. ++..|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555543 6777777777777777777765
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=42.87 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=75.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPD----VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
=..-+.+.|++++|..-|..+++.-+... ...|..-+.++.+.+.++.|+.-..++++.+ +.....+..-+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 35567788999999999999998643322 3346666677889999999999999999976 445566666678899
Q ss_pred hcCCHHHHHHHHHHHHHCCCC
Q 037409 551 QNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..++++|++-|+++++..+.
T Consensus 180 k~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcc
Confidence 999999999999999986654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.47 Score=46.38 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=81.2
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
...-.++++++.++.+.-.-. ..-...-.+.++..+.+.|..+.|+++-.+-..+ .+...+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCC
Confidence 334456666665555411100 0011333566667777777777777665443222 344456677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
++.|.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 7777665433 23566777777777777777777777665431 34455556667776666666665
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYRE 389 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 389 (603)
....| -++....++...|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55543 144444555556666666666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.28 Score=47.96 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=41.9
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
.+.|+.+.|.++.++. .+...|..|.....+.|+++-|.+.|++... +..|+-.|...|+.+
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHH
Confidence 3455555554443332 2344555555555555555555555554322 233444444555554
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 282 (603)
.-.++.+....+| -++....++.-.|+.++..+++
T Consensus 391 ~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 391 KLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444332 1333333344445544444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.27 Score=38.40 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=56.4
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
..++..++.++++.|+.+....+.+..-. +..+... ..+. --......|+..++.+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 44566666666777776666666655442 1111100 0000 01112345777778888888
Q ss_pred HHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAK-NCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 550 (603)
|+..|++..|+++++...+. +++.+...|..|+.-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888887777654 55556777777665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.49 Score=36.95 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=58.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
|..++..++.++++.|+.+....+++..=. +.++... ..+. --......|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 456788999999999999999999876532 2111100 0000 1112244566666667777
Q ss_pred HHHhCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHK-GPIPDVVTCSTMIHWL 514 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 514 (603)
+|+..|++..|.++++...+. +++.+...|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 776667777777776666653 4444455666665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.1 Score=36.47 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCC
Q 037409 91 LAKNKQYDTVVSLFKRLNSNGLFPDLF-VLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTV---TFNFLINGLCAEGR 166 (603)
Q Consensus 91 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 166 (603)
+.+.+..++|+..|..+.+.|...-+. ............|+...|...|.++-+....|-.. .-..-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345666677777777666655332221 22233445566666666666666666553333222 01111123445666
Q ss_pred HhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 167 IMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
+++.....+.+...+-+.....-..|.-+-.+.|++..|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666666655444333444445555566666666666666666655
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.6 Score=40.27 Aligned_cols=122 Identities=8% Similarity=0.003 Sum_probs=61.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 037409 91 LAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEA 170 (603)
Q Consensus 91 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 170 (603)
-...|+...|-+-....++.. +.++.........+...|+++.+.+.+..+.+. ......+...+++.....|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 344566555544444433331 223333333334455667777777666554433 122334455566666666777777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 171 ARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
..+-+-|....++ +...........-..|-++++.-.++++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7766666554333 2222222222223345566676666666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.9 Score=43.77 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
..+...-++.-++..+ +.|+..+...++ +--......++.+++++..+.+-. .+.+....+..-..
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-----------~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-----------SLGKSQFLQHHGHF 246 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-----------hhchhhhhhcccch
Confidence 3444444555555544 234433222222 223455688999999888765411 01111000111111
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++.....+..|-..+-..+..++.+.|+.++|++.++++.+.. +. +..+...|+.++...+.+.++..++.+..+..
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 2222222222333444567888889999999999999998764 33 34567899999999999999999999986544
Q ss_pred C
Q 037409 570 L 570 (603)
Q Consensus 570 ~ 570 (603)
.
T Consensus 326 l 326 (539)
T PF04184_consen 326 L 326 (539)
T ss_pred C
Confidence 4
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.34 E-value=5.1 Score=43.20 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHh--HHHHHHHHHHHcCCh
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVV--TCSTMIHWLCKEGQM 520 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~ 520 (603)
.+...+.+++|.-.|+..-+ ..--+.+|..+|+|.+|..+..++... -+.. +-..|+.-+..+++.
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 33445556666555544321 122345566666666666666655431 1211 124555566667777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
-+|-+++.+.... |. .. +..|++...|++|..+.....
T Consensus 1016 ~eAa~il~e~~sd---~~-~a----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1016 YEAAKILLEYLSD---PE-EA----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hhHHHHHHHHhcC---HH-HH----HHHHhhHhHHHHHHHHHHhcc
Confidence 7776666666532 21 11 223445556666666555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.3 Score=39.00 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=10.8
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 037409 339 FCLVGRISRARELFVSMV 356 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~ 356 (603)
+.+.++++.|.+.|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445666666666666443
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.3 Score=35.91 Aligned_cols=53 Identities=17% Similarity=0.004 Sum_probs=28.7
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
...++.+.+..++..+.-.. |.....-..-...+...|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665443 223333333344455666666666666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.17 E-value=5.8 Score=42.84 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcC--ChhHHHHHHHHHhh
Q 037409 226 TYNSIIDGLCKDG--FVDKAKELLLQMKD 252 (603)
Q Consensus 226 ~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 252 (603)
....++.+|.+.+ .++.++....+...
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3445666777666 56666666555553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.033 Score=32.11 Aligned_cols=24 Identities=4% Similarity=0.274 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 578 SSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 578 ~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
+..++.+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777777777777777664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.4 Score=35.57 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG 111 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 111 (603)
..++.+++..+++-+.-..|. ....-..-...+.++|++.+|+.+|+++....
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 456788888888877766555 33333444556677888888888888876553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.79 Score=38.16 Aligned_cols=93 Identities=16% Similarity=0.049 Sum_probs=74.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCEL----RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 516 (603)
..-+...|++++|..-|..++..-.+. ....|..-..++.+.+.++.|+.-..+.++.++. ....+..-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 455778999999999999998754222 2345666677888999999999999999998765 45555666778999
Q ss_pred cCChhHHHHHHHHHHHCC
Q 037409 517 EGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~ 534 (603)
..++++|++-|+++++..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 999999999999999964
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.2 Score=36.26 Aligned_cols=181 Identities=17% Similarity=0.079 Sum_probs=99.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHH
Q 037409 377 DQKVEDAVCLYREMLSERIRPS-VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQ 455 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 455 (603)
.|-+.-|.--|.+.+.. .|+ +..||.+.--+...|+++.|.+.|+...+.++.-+-...+.-+. +.--|+++-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 34444444445554443 233 46677777777888888888888888877655444333333332 334578888877
Q ss_pred HHHHHHHcCCCCCh--HHHHHHHHHHHhCCChhHHHHHH-HHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 456 VFQAIRNCKCELRI--ETYNCLINGLCKMGRLKTACKLF-HRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 456 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
-+...-..+ +.|+ ..|..+.. ..-++.+|..-+ ++... .|..-|...+-.+.- |+.. ...+++++..
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a 224 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKA 224 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHh
Confidence 766665543 3232 22222221 223555665443 33433 244455544433322 2221 1233344433
Q ss_pred CCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 533 KNCVPS-------EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 533 ~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
-. ..+ ..+|..|+.-+...|+.++|..+++-++..++-
T Consensus 225 ~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 225 DA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred hc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 21 111 346778888888999999999999988865543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=4.1 Score=39.41 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH--HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC--KEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
..-+.+++.+.+.|-.++|...+..+... |+|+...|..++..-. ..-+..-+..+++.|... +-.|+..|.....
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~ 538 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMK 538 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHH
Confidence 33456677777778888888888888776 4557777776665422 122366677777777754 1266677766666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037409 548 GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (603)
--...|..+.+-.++.++.+
T Consensus 539 ~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hhccCCCcccccHHHHHHHH
Confidence 55677777777777666653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.7 Score=34.95 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 037409 299 AMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ 378 (603)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (603)
.++..+.+.+.......+++.+...+. .+....+.++..|++.+. ....+.+.. . .+.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 344444555555666666666555542 345555666666554422 222233321 1 12333344555555555
Q ss_pred ChHHHHHHHHHH
Q 037409 379 KVEDAVCLYREM 390 (603)
Q Consensus 379 ~~~~A~~~~~~~ 390 (603)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.39 Score=43.07 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA-----KNCVPSEVTFC 543 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 543 (603)
..++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345667777788888888888888888887766 777888888888888888888888887765 47777776665
Q ss_pred HHHHH
Q 037409 544 TLLRG 548 (603)
Q Consensus 544 ~l~~~ 548 (603)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.9 Score=36.78 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=10.7
Q ss_pred HHHHHhCCChhHHHHHHHHHhhC
Q 037409 476 INGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
.+.|.+.|.+..|..-++++++.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 33444444444444444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.46 E-value=4.8 Score=38.58 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=47.8
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL---RIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
...++..++..+.+.|.++.|...+..+...+... .+.+....+......|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888877643221 445555667777788888888888888777
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.88 Score=40.89 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=67.4
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCCHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA-----EKLVVSDLSLS 578 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 578 (603)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+. |.+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~-P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID-PAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC-ccHHHH
Confidence 3467788889999999999999999999986 67899999999999999999999999999875 5777 777766
Q ss_pred HHHHHH
Q 037409 579 SKVVDL 584 (603)
Q Consensus 579 ~~l~~~ 584 (603)
.....+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 555554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.15 Score=29.33 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
..|+..|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.8 Score=33.67 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
.++..+...+.......+++.+...+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444555555555555555544 23444555555555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=3.9 Score=34.24 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
.+...|++++|+..++..+......+ ..+-..|++.....|.+++|...+......+. .+.....-++++...|+
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDill~kg~ 174 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhHHHHcCc
Confidence 34455555555555555554210001 11112344455555555555555555544332 22233444555555555
Q ss_pred HHHHHHHHHhh
Q 037409 591 YRECLNQFRHL 601 (603)
Q Consensus 591 ~~eA~~~~~~~ 601 (603)
.++|+.-|++-
T Consensus 175 k~~Ar~ay~kA 185 (207)
T COG2976 175 KQEARAAYEKA 185 (207)
T ss_pred hHHHHHHHHHH
Confidence 55555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.49 E-value=6.2 Score=36.41 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC--
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCR--TR----NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF-- 239 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 239 (603)
++...+++.+.+.|+..+..+|.+....... .. ....|..+|+.|.+.......++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445677777777777776555443222222 22 234677777777776544444444555544433 2222
Q ss_pred --hhHHHHHHHHHhhCCCC
Q 037409 240 --VDKAKELLLQMKDRNIN 256 (603)
Q Consensus 240 --~~~a~~~~~~~~~~~~~ 256 (603)
.+.++.+|+.+.+.|+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 23445555555554443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.46 E-value=11 Score=39.20 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=10.2
Q ss_pred HcCCcHHHHHHHHHhh
Q 037409 586 SKDKKYRECLNQFRHL 601 (603)
Q Consensus 586 ~~~g~~~eA~~~~~~~ 601 (603)
...|++++|++.++++
T Consensus 516 ~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 516 YHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHTT-HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 4567777777777665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.25 Score=27.79 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.+..++.++...|++++|++.++++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.15 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 575 LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..+..++.++...|++++|++.+++.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3568889999999999999999999865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.19 Score=45.26 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=83.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.-++-|.++|.+++|+..+.+.....+. |++++..-..+|.+..++..|+.-...++..+ ..-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3466789999999999999998886443 88889889999999999999998888888764 333445666666667788
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 554 KKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
+..+|.+-++..+...+. +.+ |-..+.+.....|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~--~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK--NIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcc--cHH----HHHHHHHhcchHhhh
Confidence 888888888888875543 333 333444444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.27 Score=27.74 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+|..++.+|...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.5 Score=36.91 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHH--HH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP-SEVTF--CT 544 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--~~ 544 (603)
..+..++..|.+.|+.+.|.+.+.++.+....+. ...+-.++......+++..+...+.++...--.. |...- ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566778888888888888888888877544433 3345667777778888888888877766541111 12111 11
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHH
Q 037409 545 --LLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 545 --l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
-+-.+...|++.+|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1223456788888887776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.1 Score=39.46 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=62.3
Q ss_pred CHHhHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHH
Q 037409 433 DSFTFATYIDGLCK-----NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC 507 (603)
Q Consensus 433 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 507 (603)
|..+|...+..+.. .+.++=....++.|.+.|+.-|..+|+.|++.+-+.. ..|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence 55566666555533 2344444455566666777777777777766553321 11111 11
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037409 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555 (603)
Q Consensus 508 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
....--|- .+-+-++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111121 22345789999999999999999999999999766653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.86 E-value=6 Score=34.46 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=21.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHhCCCHHHHHHH
Q 037409 407 SGLFQVGNLGDALKLIDKMQLN---DVVPDSFTFATYIDGLCKNGFVLEAVQV 456 (603)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 456 (603)
-.+....++..|...++.--+. .-..+..+...|+.+| ..|+.+++..+
T Consensus 198 lv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555555555542211 1112334444555544 34555554444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.71 Score=41.84 Aligned_cols=96 Identities=13% Similarity=-0.085 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG 518 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 518 (603)
.-..-|.++|.+++|+..|...+... +.++..+..-..+|.+..++..|+.-...++..+-. -...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHh
Confidence 34567889999999999999887654 558889999999999999999999888888764211 2344555555555677
Q ss_pred ChhHHHHHHHHHHHCCCCCC
Q 037409 519 QMDKANDLLLDMEAKNCVPS 538 (603)
Q Consensus 519 ~~~~A~~~~~~~~~~~~~~~ 538 (603)
+..+|.+-++..++. .|+
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 888888888888875 465
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.78 E-value=2.2 Score=42.16 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLC 480 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 480 (603)
..+.++..+..+|-.++|+++ .+|+..- .....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 445566666666766666654 2232221 22334678888887775543 25567888888888
Q ss_pred hCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.| ..| ....+|...|++++..+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHH
Confidence 88888888888877764 4556666667777766666666666655 222 23346778888888877
Q ss_pred HHHHH
Q 037409 561 LLHKM 565 (603)
Q Consensus 561 ~~~~~ 565 (603)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=7.9 Score=35.51 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHCCCCCCHhhH
Q 037409 79 PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITS----GAFVVLGRILRSCFTPNTVTF 154 (603)
Q Consensus 79 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~~~ 154 (603)
++.......+.++...|. +++......+.. .+|+..-...+.++...|+.+ ++...+..+... +++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 355666667777777764 444444455543 346666666777777777643 466666666443 3456666
Q ss_pred HHHHHHHHhcCCH-----hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHH
Q 037409 155 NFLINGLCAEGRI-----MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNS 229 (603)
Q Consensus 155 ~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (603)
...+.++...+.. ..+...+..... +++..+-...+.++.+.++ ++++..+-.+.+. +|...-..
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d------~~~~VR~~ 178 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD------PNGDVRNW 178 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC------CCHHHHHH
Confidence 6666666655422 233344433332 4566666677777777776 5677777777653 34445555
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 230 IIDGLCKDG-FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG 308 (603)
Q Consensus 230 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (603)
.+.++.+.+ ....+...+..+.. .++..+-...+.++.+.++ ..|+..+-+..+.+ + .....+.+....|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 555555543 23456666655553 3466777777888888887 46666666666543 2 2345667777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGF 339 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (603)
+. ++...+..+.+. .+|..+....+.++
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 75 677778777764 33666555555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.3 Score=39.13 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 312 KVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
=++.++++|...|+.||..+-..+++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 456778888888888888887788887766654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.25 Score=27.86 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 576 SLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 576 ~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..|..++.+|...|++++|+..+++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 578899999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.44 E-value=9.7 Score=35.85 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ---NNKKSKVVVLL 562 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 562 (603)
+.-+.+++++++.++. +...+..++..+.+..+.++..+-+++++..+ +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3445555555555443 45555555555555555555566666666553 3345555554444322 22344555544
Q ss_pred HHHHHC------CC---CCCC-------HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 563 HKMAAE------KL---VVSD-------LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 563 ~~~~~~------~~---~~~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.++. +. ..+. ..++..+...+.++|..+.|+..++-++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 444321 10 0001 1234455556677899999988888765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.39 E-value=6.7 Score=33.91 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 037409 339 FCLVGRISRARELFVSM 355 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~ 355 (603)
+.-.+.+++|-++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 33445666666666554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.15 E-value=17 Score=37.99 Aligned_cols=191 Identities=10% Similarity=-0.046 Sum_probs=95.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CCC-------HHhHHHHHHHHHhCCCHHHHHHHHH--------HHHHcCCCCChHHHH
Q 037409 410 FQVGNLGDALKLIDKMQLNDV-VPD-------SFTFATYIDGLCKNGFVLEAVQVFQ--------AIRNCKCELRIETYN 473 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 473 (603)
.-.+++..|...++.+..... .|+ +..+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889999999998865311 111 2222222333456799999999998 333333333333332
Q ss_pred H--HHHHHHhCC--ChhH--HHHHHHHHhhC---CCCCCHhHHHHHH-HHHHHc--CChhHHHHHHHHHHHCC---CCCC
Q 037409 474 C--LINGLCKMG--RLKT--ACKLFHRLQHK---GPIPDVVTCSTMI-HWLCKE--GQMDKANDLLLDMEAKN---CVPS 538 (603)
Q Consensus 474 ~--l~~~~~~~g--~~~~--A~~~~~~~~~~---~~~p~~~~~~~l~-~~~~~~--g~~~~A~~~~~~~~~~~---~~~~ 538 (603)
. ++..+...+ ..++ +..+++.+... .+..+..++..++ .++... -...++...+.+.++.- ...+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 222233223 2333 67777766552 1222333444443 333221 12235555554443221 1111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CCHHHH-----HHHHHHHHcCCcHHHHHHHHHhh
Q 037409 539 ---EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVV--SDLSLS-----SKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 539 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~-----~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
..++..+...+. .|+..+..+......+...+. .....| ..+.+.|...|+.++|.....+.
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 122333444444 788877666665544322220 133344 23445577889999998877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.04 E-value=2.6 Score=35.44 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHH--HH
Q 037409 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE--VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLS--SK 580 (603)
Q Consensus 505 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~ 580 (603)
..+..++..|.+.|+.++|.+.+.++.+....+.. ..+..+++.....|++..+...+.++...--...+.+.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788999999999999999999999987544443 356788999999999999999998886432111122211 11
Q ss_pred --HHHHHHcCCcHHHHHHHHHhhc
Q 037409 581 --VVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 581 --l~~~~~~~g~~~eA~~~~~~~l 602 (603)
-+-.+...|++.+|-+.|-..+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2223456789999988876554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.03 E-value=3.7 Score=33.90 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 520 MDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 520 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+++|...|+++.+. .|+...|..-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34455555555553 46666666555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.02 E-value=12 Score=35.90 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=50.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVP---DSFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
...+|..+...+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888899999999999999999987644221 2334444556667789999999999888873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.28 Score=25.68 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
....++.++...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556777777777777777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.7 Score=35.84 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN-----------KKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
++|+.-|++++..+ |....++..++.+|...+ .+++|...|+++.+.. |+.+.|..-.....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~---P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED---PNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHH
Confidence 34444445555543 223456666666665433 2456666666666544 56666666554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.90 E-value=17 Score=37.40 Aligned_cols=113 Identities=11% Similarity=-0.011 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCcchHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhc
Q 037409 97 YDTVVSLFKRLNSNGLFPDLFVLNLLINC-----LCKMGITSGAFVVLGRILR-------SCFTPNTVTFNFLINGLCAE 164 (603)
Q Consensus 97 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 164 (603)
...|.++++...+.| +......++.+ +....|.+.|..+++.+.+ .+ .......+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777776665 22332222222 2344566667777766655 33 223444455555443
Q ss_pred C-----CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhc
Q 037409 165 G-----RIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 165 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 216 (603)
. +.+.|..++.+....| .|+.......+..... ..+...|.++|......+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 2 4455666666665554 2332222211111111 134456666666666544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.71 E-value=18 Score=37.25 Aligned_cols=180 Identities=11% Similarity=0.010 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHh
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTML-----AKNKQYDTVVSLFKRLNS-------NGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 128 (603)
+..+|.++|+..-..+ ++..-..++..+ ....+.+.|+.+|+.+.+ .| .+.....+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4678999999887654 344444444433 345699999999999977 55 44466778888877
Q ss_pred cC-----CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----h
Q 037409 129 MG-----ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA-EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC----R 198 (603)
Q Consensus 129 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 198 (603)
.. +.+.|..++.+....|.. +.......+..... ..+...|.++|......| . ..+...+...|. .
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~--~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-H--ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-C--hHHHHHHHHHHHhCCCc
Confidence 54 556699999999988743 44433333222222 246789999999998887 2 233333332222 2
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI 255 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 255 (603)
..+...|..++.+..+.+ .+....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g----~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG----NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc----ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 447889999999998875 1111111122233333 777777777777766653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.68 E-value=19 Score=37.61 Aligned_cols=189 Identities=18% Similarity=0.185 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCc
Q 037409 62 SNEAVYFFDCMI-KMKPSPG--MTSFTILLTMLA-KNKQYDTVVSLFKRLNSNGLFPDLF-----VLNLLINCLCKMGIT 132 (603)
Q Consensus 62 ~~~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~ 132 (603)
...|++.++-+. +..++|. +.++..++..+. ...+++.|...+++....--.++-. ....++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345666676666 3333333 445566677665 5677888888888775432222211 122345555555544
Q ss_pred chHHHHHHHHHHCCCC----CCHhhHHHH-HHHHHhcCCHhHHHHHHHHHHhcC---CCCcHHHHHHHHHHHH--hcCCh
Q 037409 133 SGAFVVLGRILRSCFT----PNTVTFNFL-INGLCAEGRIMEAARLFKKLNVFA---CDPNVVTFNTLINGLC--RTRNT 202 (603)
Q Consensus 133 ~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~ 202 (603)
. |...+++.++.--. +-...+..+ +..+...+++..|.+.++.+.... .+|...++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 4 77777776654222 122233333 222223368888888887765432 2444445555544443 34556
Q ss_pred HHHHHHHHHHHHhcC------CccCCChhhHHHHHHHH--HhcCChhHHHHHHHHHh
Q 037409 203 LVALKLFEEMVNEFG------AICKPDVVTYNSIIDGL--CKDGFVDKAKELLLQMK 251 (603)
Q Consensus 203 ~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 251 (603)
+.+++.++.+..... ....|-..+|..+++.+ ...|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666633211 01233445555555544 34666666666555543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.60 E-value=12 Score=35.20 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH---cCChhHHHHHH
Q 037409 451 LEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK---EGQMDKANDLL 527 (603)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 527 (603)
+.-+.+++++++.+ +.+......++..+.+..+.++..+.++++....+. +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666553 456666666666666666666666777777665444 55666665554433 22445555555
Q ss_pred HHHHHC------CC------CCC--H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 528 LDMEAK------NC------VPS--E---VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 528 ~~~~~~------~~------~~~--~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+.++. +. .++ . .++..+...+.+.|..+.|..+++.+++.++.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 544422 10 001 1 12233344456778888888888888776653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.02 E-value=5.9 Score=31.59 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=38.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG 111 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 111 (603)
..++++++..+++-+.-..|. ....-..-...+...|++++|+++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 367888888888888776665 33333334456778899999999999988764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.86 E-value=24 Score=37.24 Aligned_cols=222 Identities=18% Similarity=0.126 Sum_probs=117.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCcc-------hHHHHH-HHHHhcCChHHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 037409 340 CLVGRISRARELFVSMVSKGCRHDVY-------SYNILI-NANCKDQKVEDAVCLYREMLSE----RIRPSVITYNTLLS 407 (603)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~ 407 (603)
....++++|..++.++...-..|+.. .++.+- ......|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888876642222221 223322 2234578888888888776654 22334556677777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHh---HHHHH--HHHHhCCCH--HHHHHHHHHHHHc---CCC---CChHHHHH
Q 037409 408 GLFQVGNLGDALKLIDKMQLNDVVPDSFT---FATYI--DGLCKNGFV--LEAVQVFQAIRNC---KCE---LRIETYNC 474 (603)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~~~ 474 (603)
+..-.|++++|..+.++..+..-.-+... +..+. ..+...|.. .+....+...... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 78888999999988877654311222222 22222 234556632 2333333333221 001 11233444
Q ss_pred HHHHHHhCCChhHHHHHHHHH----hhCCCCCCHhHH--HHHHHHHHHcCChhHHHHHHHHHHHCCCCC----CHHHHHH
Q 037409 475 LINGLCKMGRLKTACKLFHRL----QHKGPIPDVVTC--STMIHWLCKEGQMDKANDLLLDMEAKNCVP----SEVTFCT 544 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~ 544 (603)
+..++.+ ++.+..-...- ....+.|-.... ..|+......|+.++|...+.++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4455544 33333322222 222223222222 266777888899999998888887653222 2222222
Q ss_pred HHH--HHHhcCCHHHHHHHHHH
Q 037409 545 LLR--GFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 545 l~~--~~~~~g~~~~a~~~~~~ 564 (603)
.+. .....|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 33567888877777666
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.79 E-value=22 Score=36.77 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=39.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 231 IDGLCKDGFVDKAKELLLQMKDRNINP---NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKD 307 (603)
Q Consensus 231 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (603)
++.+.+.+.+++|+++.+..... .| ....+...+..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34455556666666655543322 22 2334555566666666666666666665532 444555555555554
Q ss_pred CCHH
Q 037409 308 GKMD 311 (603)
Q Consensus 308 ~~~~ 311 (603)
++..
T Consensus 437 ~~l~ 440 (846)
T KOG2066|consen 437 DQLT 440 (846)
T ss_pred cccc
Confidence 4443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.45 Score=28.28 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
++..++..|...|++++|.+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455556666666666666655554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.33 Score=26.97 Aligned_cols=26 Identities=19% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+..++.++.+.|++++|.+.+++++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566777777777777777777664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.47 E-value=8.3 Score=32.69 Aligned_cols=73 Identities=10% Similarity=-0.074 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhcCChHHHH
Q 037409 133 SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA---CDPNVVTFNTLINGLCRTRNTLVAL 206 (603)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 206 (603)
+.|+..|-++...+.-.++.....|+..|. ..+.+++++++-+..+.. -.+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666654446666666666655 567778888777766532 2466777888888888888887763
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=15 Score=33.77 Aligned_cols=122 Identities=9% Similarity=-0.039 Sum_probs=67.3
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-ChhHHHHHHHHHhhCCCCCCHhHHHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-RLKTACKLFHRLQHKGPIPDVVTCSTMI 511 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 511 (603)
+..+-...+.++.+.++ +++...+-.+.+ .++..+-...+.++.+.+ +.+.+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555666666555 345555555554 334445555555555443 23455555555553 24555556666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.++.+.|+ ..|+..+-+.++.+ + .....+.++.+.|+. +|+..+.++.+.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 66666666 45666665555532 2 234566666677764 577777777653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.10 E-value=7 Score=35.40 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037409 379 KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQ 426 (603)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (603)
++++++.++..-++.|+-||..+++.+++.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555565556666666655555555555554443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.09 E-value=4.6 Score=34.17 Aligned_cols=76 Identities=14% Similarity=-0.026 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHH
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAK 244 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 244 (603)
++|.+.|-++...+.--++.....|. .|....+.++++.++..+++.......+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45566666665544222333333333 33335566666666666666544333555666666666666666666553
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.05 E-value=7.4 Score=37.61 Aligned_cols=307 Identities=11% Similarity=-0.034 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH-------------HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 237 DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW-------------KEAKCLFIEMMDNGVQPDVVTFNAMINY 303 (603)
Q Consensus 237 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (603)
.+.++...+.+..+..+|.......++.-...|.+.|.. ..+...-+.+-..........+....-+
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 037409 304 NCKDGKMDKVNRLLELMIQR----GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK--GCRHDVYSYNILINANCKD 377 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 377 (603)
|.....+..|+++....... .-..-..+.......+....+.++|+.++..+.+. ........-+.-.....+.
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt 189 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKT 189 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhccc
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
+....|..-+.... +....-..-+..|.+..+...+..-.+......-. ++.....--+.+.-.|++.+|.+++
T Consensus 190 ~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~kA~KlL 263 (696)
T KOG2471|consen 190 LSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHPKAMKLL 263 (696)
T ss_pred CCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHHcCCCC--------ChHHHHHHHHHHHhCCChhHHHHHHHHHhh-------CCCCC----------CHhHHHHHHH
Q 037409 458 QAIRNCKCEL--------RIETYNCLINGLCKMGRLKTACKLFHRLQH-------KGPIP----------DVVTCSTMIH 512 (603)
Q Consensus 458 ~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p----------~~~~~~~l~~ 512 (603)
...--...+- ....+|.+...+.+.|.+..+..+|.++++ .|.+| .-.+.-..+-
T Consensus 264 ~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~ 343 (696)
T KOG2471|consen 264 LVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL 343 (696)
T ss_pred HhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.|...|+.-.|.+.|.+.... +..++..|..++.+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.91 E-value=2 Score=37.36 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 575 LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..+...++.+..+.|++++|.++|.+++
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566666677777777777776654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=5.1 Score=36.23 Aligned_cols=79 Identities=10% Similarity=-0.084 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
.+.+-.+|.+.++++.|++..+.++... |.++.-+.--+-.|.+.|.+..|..-++..++..+..|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3455566778888888888888888764 455666666777788888888888888888877776566665555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.89 E-value=10 Score=31.33 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 037409 404 TLLSGLFQVGNLGDALKLIDK 424 (603)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~ 424 (603)
.++..+...|++-+|+++.+.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 333444444454444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.64 E-value=9.2 Score=30.56 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 447 NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
.++++++..++..+.-.. |.....-..-...+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555544332 212222222233344455555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.7 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
++..++.+|...|++++|.+.|++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666666667777776666654
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.7 Score=25.60 Aligned_cols=28 Identities=7% Similarity=0.203 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+..++.++.+.|++++|.+.++++++.-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4455666666777777777777766543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.80 E-value=1.2 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+++.++..|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444555555555555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.46 E-value=27 Score=34.33 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=82.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
|....-.++..+.....+.-...+..+++..| .+...+..++++|... ..+.-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666543 2455566666666665 445556666666554433 3333334444
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHHHHHH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELR-----IETYNCLINGLCKMGRLKTACKLFHRLQHK-GPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 516 (603)
.|.+ ++.+.+...|.++...-++-. .+.|.-+...- ..+.+....+..++... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 666666666666554332211 12333333211 23445555555554442 222223333444444555
Q ss_pred cCChhHHHHHHHHHHHCC
Q 037409 517 EGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~ 534 (603)
..++++|++++..+++.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 556666666666655543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.37 E-value=3.4 Score=40.74 Aligned_cols=103 Identities=19% Similarity=0.086 Sum_probs=62.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAAR 172 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 172 (603)
..|+...|...+..+......-.......+.+.+.+.|-...|-.++.+.+... ....-++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 467777777777776654311122234455666667777777777776666654 2244556667777777777778877
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHH
Q 037409 173 LFKKLNVFACDPNVVTFNTLINGLC 197 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
.|++..+.. +.+.+.-+.|...-|
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHHHHH
Confidence 777766553 334444555554444
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.09 E-value=13 Score=32.47 Aligned_cols=118 Identities=10% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCH-hHHHHHHHHHHHcCChhH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDV-VTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 522 (603)
|.....+..|...|.+.+..+ |..+.-|..-+.++.+..+++.+..--.+.++. .||. .....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 444556777777666665433 223345566666777777777777777766664 3443 334455566667777777
Q ss_pred HHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 523 ANDLLLDMEAK----NCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 523 A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
|+..++++.+. .+++...+...|..+--..=...+..++.++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77777777433 2333444555554443333233444444433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.99 E-value=6.8 Score=38.93 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQM 250 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 250 (603)
..-|..|.++..+.|++..|.+.|...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 334555555555555555555555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.73 E-value=9.6 Score=34.58 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 291 QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG---VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
+....+...++..-....+++.+..++-.+.... ..++. +-.+.++.+ -.-++++++.++..-+.-|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3344444444444444455555555555444321 01111 111222222 222445666666555566666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 037409 368 NILINANCKDQKVEDAVCLYREMLS 392 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (603)
+.+++.+.+.+++.+|.++...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666555544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.63 E-value=12 Score=29.32 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=31.0
Q ss_pred CHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 503 DVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+..+--.+.+++.+.. +..+.+.++++..+.. +| .......|+-++.+.|+++++.++++.+++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3444444555555443 2334445555555422 22 12233444445555555555555555555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.57 E-value=39 Score=35.18 Aligned_cols=75 Identities=16% Similarity=0.035 Sum_probs=39.4
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 037409 124 NCLCKMGITSGAFVVLGRILRSCFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNT 202 (603)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (603)
..+.+.+.+++|+.+.+.....-.. .-..++..++..+...|++++|-...-.|.. -+..-|..-+..+...++.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 3455556666666655443322110 0233555566666666777777666666652 2445555555555555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.46 E-value=40 Score=35.22 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 037409 156 FLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT 199 (603)
Q Consensus 156 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
.++-.+.|+|++++|.++..+.... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3666788999999999998555432 234445566666777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.32 E-value=31 Score=33.87 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=51.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMD 337 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
|.....+++..+.++..+.-...+..+|+.-| .+...+..++.+|... ..++-..+++++.+.... |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45555566666666666666666666666543 3455566666666655 445555566655555332 2332333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 037409 338 GFCLVGRISRARELFVSMVSK 358 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~ 358 (603)
.| ..++.+.+...|.++...
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHH
Confidence 33 335556666666655543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.99 E-value=2 Score=23.93 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 540 VTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.+|..++..|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887764
|
... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.90 E-value=5.9 Score=28.73 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
++.+-++.+...+..|++......+.+|.+.+++..|.++++.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555556666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=44 Score=35.01 Aligned_cols=147 Identities=12% Similarity=0.001 Sum_probs=81.8
Q ss_pred HHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037409 47 IAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCL 126 (603)
Q Consensus 47 ~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (603)
-..|..+.-....|+...+..+-.++- ..|-..-..|..+...+ ....+++...++++.. +.+.....-...+..+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~-d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLK-DYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcc-CCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 345777777778899998888877652 22322222333332221 1224554444444432 1122233333445556
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTL 203 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (603)
.+.+++......+ .. .+.+.........+....|+.++|......+-..| .........++..+.+.|...
T Consensus 110 a~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 110 ARREDWRGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHccCHHHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCC
Confidence 6666666555422 11 23466666777778888888888877777765544 445566777777777665543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.70 E-value=17 Score=31.75 Aligned_cols=119 Identities=9% Similarity=-0.078 Sum_probs=72.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhH
Q 037409 409 LFQVGNLGDALKLIDKMQLNDVVPDSF-TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 487 (603)
|.....++.|+..+.+.+.. .|... -|+.-+..+.+..+++.+..--.+.++.. +..+.....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccH
Confidence 55666788888877776654 45553 34455566677888888877776666543 3334455566677778888999
Q ss_pred HHHHHHHHhhC----CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 037409 488 ACKLFHRLQHK----GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM 530 (603)
Q Consensus 488 A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 530 (603)
|+..+.+.... .+.|-...+..|..+=-+.=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999887542 23334445555554433222334444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.60 E-value=17 Score=30.04 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHhH
Q 037409 141 RILRSCFTPNTVTFNFLINGLCAEGRIME 169 (603)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (603)
.+.+.+..++...+..+++.+.+.|++..
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344445555555555555555554433
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=86.51 E-value=11 Score=33.63 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+....|-.|.+.++...+.++-..-+
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33334444444444444444444443
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.06 E-value=3.7 Score=40.44 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=76.0
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
.-.|+...|...+..+....+.-..+....|...+.+.|-..+|-.++.+.+... ...+.++..+++++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3468888888888887765444444556677778888888888888888888775 566778888899999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHH
Q 037409 560 VLLHKMAAEKLVVSDLSLSSKVVD 583 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~ 583 (603)
+.++++.+..++ ++++-..|..
T Consensus 697 ~~~~~a~~~~~~--~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTK--CPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCC--ChhhHHHHHH
Confidence 999998887665 5554444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.04 E-value=7.9 Score=28.46 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
+..+-++.+...+..|++......+.+|.+.+++..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555566667777777777777777777777777766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.00 E-value=6.5 Score=33.58 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPSEVTFCTLLRG 548 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 548 (603)
+.+..+..+.+.+.+.+++...+.-++.+|. |..+-..++..++-.|+|++|..-++-.-... ..+....|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455567778889999999999988887666 77788889999999999999998888776642 12234456666544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.48 E-value=54 Score=34.82 Aligned_cols=231 Identities=13% Similarity=0.001 Sum_probs=121.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHH-------HHHHHH-HHHHhcCChHHHHHHHHHHHHhcC-CccCCChhhHHH
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVV-------TFNTLI-NGLCRTRNTLVALKLFEEMVNEFG-AICKPDVVTYNS 229 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 229 (603)
.......++++|..++.++...-..|+.. .|+.+- ......|++++|.++.+.....-. ....+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 34456789999999998876532222221 344432 333457899999999988877531 112234556677
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH-----HHHHhcCCHH--HHHHHHHHHHHCC---CC---CCHHH
Q 037409 230 IIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLI-----CGFCCVDDWK--EAKCLFIEMMDNG---VQ---PDVVT 296 (603)
Q Consensus 230 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~--~A~~~~~~~~~~~---~~---~~~~~ 296 (603)
+..+..-.|++++|..+..+..+..-.-++..+..+. ..+...|+.. +.+..|....... .+ +-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 7788888999999998887765542222333333222 3344556332 2223333222210 01 12233
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----cchHHH
Q 037409 297 FNAMINYNCKD-GKMDKVNRLLELMIQRGVNPDTVTY--NSLMDGFCLVGRISRARELFVSMVSKGCRHD----VYSYNI 369 (603)
Q Consensus 297 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 369 (603)
...++.++.+. +...++..-++.-......|-.... ..|+......|+.+.|...++++......++ ..+...
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 44444455441 1222222222222222222222222 3667777889999999998888876533322 112222
Q ss_pred HHHH--HHhcCChHHHHHHHHH
Q 037409 370 LINA--NCKDQKVEDAVCLYRE 389 (603)
Q Consensus 370 l~~~--~~~~~~~~~A~~~~~~ 389 (603)
.+.. ....|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 3346777777666654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.40 E-value=8.1 Score=28.07 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 169 EAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
++.+-++.+....+-|++....+.++++.+.+++..|+++|+.+...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44445555555555666666666666666666666666666666543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.20 E-value=6.5 Score=35.96 Aligned_cols=98 Identities=13% Similarity=-0.003 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhC---CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHK---GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
...|--=++-|.+..++..|...|.+-++. ++..+...|+.-..+-...|++..|+.-...++... +.....+..=
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 345555566677777777888877776653 233345667766666667777777777777777653 3344556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+.++.....+.+|..+.+....
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 6677777777777777776653
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.18 E-value=27 Score=31.05 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=118.3
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC-
Q 037409 289 GVQPDVVTFNAMINY-NCKDGKMDKVNRLLELMIQRGVNPDT---VTYNSLMDGFCLVGRISRARELFVSMVSK---GC- 360 (603)
Q Consensus 289 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 360 (603)
+..||+..-|..-.. -.+..+.++|+.-|...++....... .....++..+.+.+++++..+.+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665544432221 12344788899999888876433222 34456677888899999988888887642 11
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----C
Q 037409 361 -RHDVYSYNILINANCKDQKVEDAVCLYREMLSE-----RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLND----V 430 (603)
Q Consensus 361 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~ 430 (603)
..+..+.|.++..-....+.+-....++.-+.. +-..-..+-+.+...|...+.+.+..++++++...- -
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 224456677776666566665555555443221 111111233556677778888888888888875431 1
Q ss_pred CCC-------HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChHHHHHHH----HHHHhCCChhHHHHHHHHHh
Q 037409 431 VPD-------SFTFATYIDGLCKNGFVLEAVQVFQAIRNCK-CELRIETYNCLI----NGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 431 ~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 496 (603)
..| ...|..-++.|....+-..-..+|++..... --|.+.+...+- ....+.|++++|..-|-++-
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 111 2345555666777777777777777665321 134444433322 23456677877765444433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.3 Score=26.86 Aligned_cols=23 Identities=0% Similarity=0.021 Sum_probs=13.2
Q ss_pred HHHHHHHcCCcHHHHHHHHHhhc
Q 037409 580 KVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 580 ~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++.+|...|+.+.|+++++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 35556666666666666655543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.93 E-value=12 Score=27.13 Aligned_cols=55 Identities=7% Similarity=0.020 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
|.|......++..+...|++++|.+.+-.+++......+...-..++.++...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555666666666666666666666666544332233444445555544443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.83 E-value=28 Score=30.95 Aligned_cols=210 Identities=13% Similarity=0.104 Sum_probs=124.9
Q ss_pred HCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHhC----
Q 037409 322 QRGVNPDTVTYNSLMDG-FCLVGRISRARELFVSMVSKGCRHDVYSY---NILINANCKDQKVEDAVCLYREMLSE---- 393 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~---- 393 (603)
+.+..||...-+..-.+ -.+..++++|+.-|+++++.........| ..++..+.+.+++++....+.+++..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34456666554433221 12345788999999998886433333433 44567788899999998888887642
Q ss_pred -CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh----hC-CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Q 037409 394 -RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQ----LN-DVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC-- 465 (603)
Q Consensus 394 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 465 (603)
...-+..+.+.+++..+...+.+--.+.++.-. .. +-..-..|-..+...|...|.+.+-.++++++...--
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 112244566777776666666665555554322 11 1111112344567777778888888888887764211
Q ss_pred --CCC-------hHHHHHHHHHHHhCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHH----HHHHcCChhHHHHHHHHHH
Q 037409 466 --ELR-------IETYNCLINGLCKMGRLKTACKLFHRLQHK-GPIPDVVTCSTMIH----WLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 466 --~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 531 (603)
..| .++|..-+..|....+-.+-..++++.+.. ..-|.+.+...+-. ...+.|++++|-.-|-++.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 112 345666677788888888888888877652 23345554443322 2456788888876544443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.11 E-value=8.9 Score=32.81 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CCHhHHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PDVVTCSTMIHW 513 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~ 513 (603)
|....+..+.+.+.+.+++...++-.+.+ |.+...-..++..++-.|++++|..-++-.-+..+. +-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677888899999999998877766 667778888999999999999999888877764333 235566666655
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.67 E-value=1.4 Score=40.17 Aligned_cols=119 Identities=12% Similarity=-0.039 Sum_probs=78.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAN 524 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 524 (603)
...|.++.|++.|...+..+ ++....|..-..++.+.+....|++-++...+.++. ...-|-.-..+....|+|++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 35677888888888777765 666677777777788888888888888888776544 3444555555666778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 525 DLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
..+..+.+.++.+.... .+-...-..+..++-...+++..+
T Consensus 203 ~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHHH
Confidence 88888888765444333 333344445555555555555543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.55 E-value=22 Score=32.13 Aligned_cols=60 Identities=12% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+++.....|..+|.+.+|.++.++.+..+ +.+...+..|++.+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45566677888999999999999998876 6788888889999999999888888887775
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.49 E-value=48 Score=32.61 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=66.6
Q ss_pred CCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH-CCCCCCCHH
Q 037409 501 IPDVVTC-STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF--VQNNKKSKVVVLLHKMAA-EKLVVSDLS 576 (603)
Q Consensus 501 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 576 (603)
.|+..++ +.+...+.+.|-..+|...+..+.... +|+...|..++..- ..+-+...+.++|+.|+. .| . ++.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~--d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-A--DSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-C--ChH
Confidence 3455555 567777888899999999999999874 67777777766542 222337788899999874 45 3 777
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.|......-...|+.+.+-.++-+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHH
Confidence 776666555577776655554443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.12 E-value=1.9 Score=39.35 Aligned_cols=87 Identities=11% Similarity=-0.014 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.|.++.|++.+...+... ++....|..-..++.+.+.+..|++-+......+ +....-|-.-..+..-.|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHH
Confidence 344555555554444432 1233333333344444445555544444444332 11222222222333334555555555
Q ss_pred HHHHhhCCC
Q 037409 492 FHRLQHKGP 500 (603)
Q Consensus 492 ~~~~~~~~~ 500 (603)
|....+.+.
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 555554443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=67 Score=33.73 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=73.8
Q ss_pred hcCChHHHHHHHHHHHhCC-CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHH
Q 037409 376 KDQKVEDAVCLYREMLSER-IRPSV--ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLE 452 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (603)
...+.+.|..++....... ..+.. ..+..+.......+..+++...++...... .+......-+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3556788999998775442 22121 223344333333333566777766654332 233344444555568899998
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 453 AVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
+...+..|.... .....-.-.+.+++...|+.++|...|+.+..
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888875422 33455666788888889999999999998754
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.37 E-value=17 Score=28.55 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNKK---SKVVVLLHKMAA-EKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++..+-..+++++.++.+. .+.+.+++...+ ..+. ...+....|+-.+.+.|+++.++++++.+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~-~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE-RRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc-cchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 57778888899999887655 667889999886 3333 456667778888999999999999998765
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=81.60 E-value=18 Score=26.30 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCc
Q 037409 68 FFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFP-DLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 132 (603)
-++..+..+|. |......+...+...|++++|++.+-.+++.+... +...-..++..+...|.-
T Consensus 10 al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 10 ALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34445555555 77888888888899999999999888888764222 334445555555555543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=81.35 E-value=36 Score=29.71 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHcCChh-------HHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 504 VVTCSTMIHWLCKEGQMD-------KANDLLLDMEAKNCVP----S-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
...+-.++|.|...|+.+ .|.+.|.+..+..-.| + ......++....+.|++++|.+++.+++..+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 344556677777777744 3555555555442121 2 345567788889999999999999999865443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.76 E-value=0.82 Score=36.95 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=59.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... +. ...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd-----~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YD-----LDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cC-----HHHHHHHHHhcc
Confidence 35566677788888888888888766555677888888888888877887777772211 12 235566777788
Q ss_pred CHHHHHHHHHHHH
Q 037409 554 KKSKVVVLLHKMA 566 (603)
Q Consensus 554 ~~~~a~~~~~~~~ 566 (603)
.++++.-++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8888877776643
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.56 E-value=1.4e+02 Score=36.01 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=87.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 037409 191 TLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC 270 (603)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (603)
.+..+-.+.+.+..|+..++.-.... .........+..+...|...++++...-+...... +...+. -|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHH
Confidence 33445556778888888888741110 00011223344455588888888887777664221 222232 344455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYN-SLMDGFCLVGRISRAR 349 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 349 (603)
..|++..|...|+.+.+.+ ++....++.++......|.++...-..+...... .+....++ .-+.+--+.++++..+
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7788888889998888774 3346667777777667777777766555554432 22222222 2233335566666666
Q ss_pred HHHH
Q 037409 350 ELFV 353 (603)
Q Consensus 350 ~~~~ 353 (603)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=80.25 E-value=50 Score=30.63 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCCCCChhhHH
Q 037409 243 AKELLLQMKDRNINPNVITYN 263 (603)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~ 263 (603)
...+++.+.+.|+.-+..+|.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHhccCccChHHH
Confidence 344555555555554444443
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.01 E-value=64 Score=34.80 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQLN 428 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (603)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3888899999999999999999888753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.4 bits (225), Expect = 3e-19
Identities = 21/199 (10%), Positives = 61/199 (30%), Gaps = 1/199 (0%)
Query: 166 RIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVV 225
+ + + T +A L + +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC-CVDDWKEAKCLFIE 284
YN+++ G + G + +L +KD + P++++Y + + D + +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 285 MMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344
M G++ + +++ + + V+++ P V + L+
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 345 ISRARELFVSMVSKGCRHD 363
+L + + + C +
Sbjct: 287 RVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.0 bits (224), Expect = 4e-19
Identities = 21/195 (10%), Positives = 59/195 (30%), Gaps = 4/195 (2%)
Query: 236 KDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFI---EMMDNGVQP 292
+D + Q ++ + D A L +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRA-REL 351
+ +NA++ + G ++ +L ++ G+ PD ++Y + + + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ 411
M +G + +L++ + ++ + P + + LL ++
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 412 VGNLGDALKLIDKMQ 426
KL ++
Sbjct: 284 KDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.6 bits (202), Expect = 2e-16
Identities = 29/228 (12%), Positives = 64/228 (28%), Gaps = 4/228 (1%)
Query: 243 AKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302
A L + +P L+ + + + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 303 YNCKDGKMDKVNRLLEL---MIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKG 359
++ + LL + Q+ YN++M G+ G + + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 360 CRHDVYSYNILINANCK-DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDA 418
D+ SY + + DQ +M E ++ + LLS + L
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 419 LKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCE 466
K+ L +P + + + + ++ ++ +C
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.2 bits (188), Expect = 8e-15
Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 4/217 (1%)
Query: 382 DAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI 441
A CL P LL +L + + +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 442 DGLCKNGFVLEAVQVFQAIRNCK---CELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498
+ A + + L ++ YN ++ G + G K + ++
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 499 GPIPDVVTCSTMIHWLCKEGQMDKA-NDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557
G PD+++ + + + ++ Q L M + + LL +
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 558 VVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC 594
V + + + ++ S + D+ +KD +
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.5 bits (181), Expect = 6e-14
Identities = 26/222 (11%), Positives = 61/222 (27%), Gaps = 7/222 (3%)
Query: 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVL 119
++ A DC + SP LL D + + + L L
Sbjct: 71 LSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL 130
Query: 120 NLLINCLCKMGITSGAFVVL---GRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKK 176
C A +L + +N ++ G +G E +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 177 LNVFACDPNVVTFNTLINGLCR-TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLC 235
+ P+++++ + + R ++ + E+M E K + ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE---GLKLQALFTAVLLSEED 247
Query: 236 KDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKE 277
+ + ++ P + + L+ D
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 5e-12
Identities = 88/646 (13%), Positives = 179/646 (27%), Gaps = 208/646 (32%)
Query: 34 TDLSSHHFKDGTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAK 93
+ H ++ ++ F + + FDC K M +IL
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDN-----------FDC----KDVQDMPK-SIL-----S 47
Query: 94 NKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVT 153
++ D ++ ++ L L + +LR N
Sbjct: 48 KEEIDHIIMSKDAVSG---------TLRLFWTLLSKQ-EEMVQKFVEEVLR----IN--- 90
Query: 154 FNFLINGLCAE---------------GRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR 198
+ FL++ + E R+ ++F K NV + + L L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLE 146
Query: 199 TR-NTLVAL-------K--LFEEMVNEFGAICK-PDVVTYNSIIDGLCKDGFVDKAKELL 247
R V + K + ++ + CK + + ++ + + +L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------KNCNSPETVL 199
Query: 248 LQMKD--RNINPNVITYNSLICG-FCCVDDWKEA-----------KCLFIEMMDNGVQPD 293
++ I+PN + + + + CL + + N VQ +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN-VQ-N 255
Query: 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFV 353
+NA N +CK L+ R + + D L + + +
Sbjct: 256 AKAWNAF-NLSCK-----------ILLTTR--------FKQVTDF--LSA--ATTTHISL 291
Query: 354 SMVSKGCRHDVYSYNILIN-ANCKDQKVEDAVC----LYREMLSERIRPSVITYNTLLSG 408
S D ++L+ +C+ Q + V +++E IR + T++
Sbjct: 292 DHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-- 348
Query: 409 LFQVGNLGDALKLIDKMQLNDVVPDSF-----TFATYIDG-------LC------KNGFV 450
V D L I + LN + P + + + L V
Sbjct: 349 --HVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 451 LEAVQVFQ----AIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHR-----------L 495
+ V + K E I + + K+ HR
Sbjct: 405 MVVVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYA----LHRSIVDHYNIPKTF 459
Query: 496 QHKGPIPDVVT---CSTMIHWLCKEGQMDKAN---DLLLDMEAKNCVPSEVTFCTLLRGF 549
IP + S + H L ++ + LD R F
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----------------FR-F 502
Query: 550 VQNNKKSKVVVLLHKMAAEKLVVSDLSL--SSKVVDLLSKDKKYRE 593
++ K+ + S +++ L + K Y+
Sbjct: 503 LEQ----------------KIRHDSTAWNASGSILNTLQQLKFYKP 532
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-11
Identities = 47/262 (17%), Positives = 82/262 (31%), Gaps = 68/262 (25%)
Query: 364 VYSYNILINANCKDQKVEDAVCLYREMLSER------IRPSVITYNTLLSGLFQVGN--- 414
V+ + N +CKD V+D + +LS+ + ++ L
Sbjct: 24 VFEDAFVDNFDCKD--VQDMP---KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 415 ----LGDALK-----LIDKMQLNDVVPDSFT--FATYIDGLCKNGFVLEAVQV-----FQ 458
+ + L+ L+ ++ P T + D L + V V +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 459 AIRNCKCELRIETYNCLINGLCKMGRLKT-----ACKLFHRLQHKGPIPDVVTCSTMIHW 513
+R ELR LI+G+ G KT C +++Q K I W
Sbjct: 139 KLRQALLELRPAKN-VLIDGVLGSG--KTWVALDVCL-SYKVQCKMDFK--------IFW 186
Query: 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS 573
L + +L ++ LL N + KL +
Sbjct: 187 L-NLKNCNSPETVLEMLQ------------KLLYQIDPNWTS-----RSDHSSNIKLRIH 228
Query: 574 DLSLSSKVVDLLSKDKKYRECL 595
+ +++ LL K K Y CL
Sbjct: 229 SIQ--AELRRLL-KSKPYENCL 247
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 64/454 (14%), Positives = 120/454 (26%), Gaps = 172/454 (37%)
Query: 8 RSFSLASKAGYRCNFWCSFGRPPNPKTDLSSHHFKDGTSIAKFLNDRHKSGNITSNEAVY 67
S+ + K ++ FW + +P+T L + L Y
Sbjct: 172 LSYKVQCKMDFKI-FWLNLKNCNSPETVL------------EMLQKLL-----------Y 207
Query: 68 FFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLC 127
D + S I L + S+ L L NCL
Sbjct: 208 QIDPNWTSRSDH---SSNIKL----------RIHSIQAELR------RLLKSKPYENCL- 247
Query: 128 KMGITSGAFVVLGRILRSCFTPNTV-TFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV 186
L +L + FN C +I+
Sbjct: 248 -----------L--VLLNVQNAKAWNAFNL----SC---KIL------------------ 269
Query: 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV-DKAKE 245
+T TR V L T+ S+ D+ K
Sbjct: 270 LT----------TRFKQVTDFL------------SAATTTHISLDHH--SMTLTPDEVKS 305
Query: 246 LL---LQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302
LL L + +++ V+T N + E + +G+ T++ +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLS------------IIAESIRDGLA----TWDNWKH 349
Query: 303 YNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRH 362
NC DK+ ++E + + P R++F +
Sbjct: 350 VNC-----DKLTTIIESSLNV-LEPAEY------------------RKMFDRLS------ 379
Query: 363 DVYSYNILINA--------NCKDQKVEDAV--CLYREMLSERIRPSVITYNTL-LSGLFQ 411
V+ + I + V V ++ ++ + S I+ ++ L +
Sbjct: 380 -VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 412 VGNLGDAL--KLIDKMQLNDVVPDSFTFATYIDG 443
+ N AL ++D + Y+D
Sbjct: 439 LENEY-ALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 67/480 (13%), Positives = 141/480 (29%), Gaps = 85/480 (17%)
Query: 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLL 122
A + + ++ + +P L + Y L + L
Sbjct: 101 KCAAFVGEKVLDITGNP--NDAFWLAQVYCCTGDYARAKCLLT--KEDLYNRSSACRYLA 156
Query: 123 INCLCKMGITSGAFVVLG-------------RILRSCFTPNTVTFNFLINGLC--AEGRI 167
CL K+ GA +LG ++L + G
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216
Query: 168 MEAARLFKKLNVFACDP-NVVTFNTLINGLCRTRNTLVALKLFEEMVN-EFGAICKPDVV 225
A +K+ D F+ L++ + L A + ++ ++ + K D
Sbjct: 217 DRAKECYKE--ALMVDAKCYEAFDQLVSN-----HLLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 226 TYNSIID-GLCKDGFVDKAKELLLQMKDRNINP-NVITYNSLICGFCCVDDWKEAKCLFI 283
S+ L K D+ + + N + + + +
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329
Query: 284 EMMDNGVQPDVVTFNAMINY-NC--KDGKMDKV----NRLLELMIQRGVNPDT-VTYNSL 335
++++ P + + + G+ +K+ N L++ +P+ VT+ ++
Sbjct: 330 KILEI--DPY--NLDVYPLHLASLHESGEKNKLYLISNDLVDR------HPEKAVTWLAV 379
Query: 336 MDGFCL--VGRISRARELFVSMVSKGC---RHDVYSYNILINANCKDQKVEDAVCLYREM 390
G V +IS AR F SK ++ ++ + + + A+ Y
Sbjct: 380 --GIYYLCVNKISEARRYF----SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433
Query: 391 LSERIRP-SVITYNTLLSGLFQVGNLGDALKLIDK-MQLNDVVPDSFTFATYIDGLCKNG 448
R+ + + Y L Q+GN+ A + + L L + G
Sbjct: 434 A--RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QY------DPLLLNELG 482
Query: 449 FVL-------EAVQVF-QAIRNCKCELRI-----ETYNCLINGLCKMGRLKTACKLFHRL 495
V A+ F A+ K T+ L + K+ A ++
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 603 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.62 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.54 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.5 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.48 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.45 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.37 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.36 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.32 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.32 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.3 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.29 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.26 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.25 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.25 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.21 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.19 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.19 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.17 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.17 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.16 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.09 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.08 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.04 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.03 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.01 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.01 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.0 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.99 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.98 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.97 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.97 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.95 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.95 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.94 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.93 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.91 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.91 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.9 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.89 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.89 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.87 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.85 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.85 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.84 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.82 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.8 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.78 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.76 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.76 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.72 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.72 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.72 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.71 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.71 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.64 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.63 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.61 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.57 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.52 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.52 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.51 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.45 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.41 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.4 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.12 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.08 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.04 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.98 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.94 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.83 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.56 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.49 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.47 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.38 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.33 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.28 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.0 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.0 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.0 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.89 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.72 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.59 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.56 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.53 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.3 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.25 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.08 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.35 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.05 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.65 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.12 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.91 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.13 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.24 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.19 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.74 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.76 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.6 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.14 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.98 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.81 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.59 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.73 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.82 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 82.62 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.52 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.49 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.34 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.28 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.81 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.76 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=371.68 Aligned_cols=506 Identities=9% Similarity=-0.049 Sum_probs=424.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|....+...|+.+ |.+++..|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 45666677777665 6678899999999999999999999999999865 57889999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHhcCChH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVF---------------ACDPNVVTFNTLINGLCRTRNTL 203 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~ 203 (603)
++++... .++..+++.++.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988654 568899999999999999999999999954321 22346889999999999999999
Q ss_pred HHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHH--HH-HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037409 204 VALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAK--EL-LLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC 280 (603)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 280 (603)
+|++.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.+
T Consensus 218 ~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 218 RAKECYKEALMVD----AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9999999999873 445666666665554433322221 11 4445554444556677778899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037409 281 LFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC 360 (603)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 360 (603)
+|+++.+. +++..+++.++..|.+.|++++|..+|+++.+.++. +..++..++.++...|++++|.++++.+.+..
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998865 589999999999999999999999999999987644 77889999999999999999999999998764
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHH
Q 037409 361 RHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATY 440 (603)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (603)
+.+..++..++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|+++|+++.+.+. .+..++..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHH
Confidence 45778899999999999999999999999987533 3678999999999999999999999999987653 377889999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC----CCCCC--HhHHHHHHHHH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK----GPIPD--VVTCSTMIHWL 514 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~ 514 (603)
+.+|.+.|++++|.++|+++.+.. +.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999999876 668999999999999999999999999999886 55677 78999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
.+.|++++|++.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+..+. ++..+..++.+|.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN--EIMASDLLKRALE 595 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHh
Confidence 99999999999999999886 668999999999999999999999999999997765 8888888887764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=356.29 Aligned_cols=493 Identities=10% Similarity=0.031 Sum_probs=408.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 037409 92 AKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAA 171 (603)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 171 (603)
...|....+...+..+. .++...++.++..+.+.|++++|..+++++... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34455555555555443 467889999999999999999999999999865 457788999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc------------CCccCCChhhHHHHHHHHHhcCC
Q 037409 172 RLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEF------------GAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
.+|+++... +++..+++.++.+|.+.|++++|+++|+++.... ....+.+..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999998654 7889999999999999999999999999532211 00123458899999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC--L-FIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRL 316 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (603)
+++|.++|+++.+.+. .+...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999999988642 255666666665554433332221 1 44454444444555677778889999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037409 317 LELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIR 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 396 (603)
|+++.+. +++..++..++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +
T Consensus 295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 9999876 5789999999999999999999999999999876 4478889999999999999999999999998653 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
.+..++..++..|.+.|++++|.++|+++.+... .+..++..++..+.+.|++++|.++|+++.+.+ +.+..++..++
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 4788999999999999999999999999987543 367899999999999999999999999999876 66889999999
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVPS--EVTFCTLLRGFV 550 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 550 (603)
.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999997665 8899999999999999999999999999876 55676 789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 551 QNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.|++++|.+.++++.+.++ .++..+..++.+|.+.|++++|.+++++++
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999998765 489999999999999999999999999875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-30 Score=250.65 Aligned_cols=380 Identities=9% Similarity=0.011 Sum_probs=227.7
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
.+.+.|++++|++.++++.+. .|.+...+..+...+...|++++|...++...+. .+.+..+|..++..|.+.|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC
Confidence 334445555555555544443 2333334444444444555555555555444433 12244445555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
+++|+..|+++.... +.+...+..+..++.+.|++++|...++++.+..+. +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555554432 223344555555555555555555555555544321 233444555555555666666666666
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS 434 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (603)
+.+.. +.+..++..+...+.+.|++++|+..|+++...++ .+...+..+...+...|++++|...+++.....+. +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 55542 22345555566666666666666666666655432 24555666666666677777777777666554322 45
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
.++..+...+...|++++|...++++.+.. +.++.++..++.++.+.|++++|...|+++.+..+. +..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHH
Confidence 666667777777777777777777777654 445667777777777777777777777777776443 667777777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK 589 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 589 (603)
...|++++|++.++++++.. +.+..++..++.++.+.|++++|...++++++..+ .....+..++.++...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHhHHHHHHHcc
Confidence 77778888888777777753 45567777777777788888888888887776544 36677777777776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-29 Score=247.36 Aligned_cols=381 Identities=14% Similarity=0.067 Sum_probs=246.2
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
.+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+. .|.+..+|..+...+.+.|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCC
Confidence 3444555555555555554432 223334444445555555555555555555544 23444555555555555555
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLEL 319 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (603)
+++|.+.|+++.+.. +.+...|..++..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555554431 1233445555555555555555555555555442 22333444555555555666666666666
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 037409 320 MIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSV 399 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 399 (603)
+.+..+ .+..++..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|+..|++.....+ .+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 555432 244556666666666666666666666666653 22445566667777777777777777777766532 256
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 037409 400 ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGL 479 (603)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (603)
.++..+...+...|++++|+..++++.+..+. +..++..+...+.+.|++++|...++++.+.. +.+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 67777777888888888888888887775433 56677788888888888888888888888765 66788888888888
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
.+.|++++|...++++.+..+. +..++..++.++.+.|++++|+..++++++.. |.+...+..++..+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 8899999999999988886544 67788888888999999999999999988864 4567778888877766653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=235.75 Aligned_cols=452 Identities=12% Similarity=0.009 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
+..|...+..+.+.|++++|+..|++++..+ |+..++..++.++...|++++|...++++.+..+. +..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4556677777777777777777777777664 56677777777777777777777777777766433 55666667777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
+...|++++|...|+++...+ +++......++..+........+.+.+..+.... ..++...+..-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT---ATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhccCChhhHHHhhccCC
Confidence 777777777777777766654 3333333333333333222222222222222111 011111111100000011111
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 037409 241 DKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK---DGKMDKVNRLL 317 (603)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 317 (603)
.....+...+......+. . .....+.+...+......+.. .|++++|...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELT----------------F----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp CCHHHHHHHHTTSCCCCC----------------C----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHH----------------H----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 111111111111100000 0 000001123333333333333 56666666666
Q ss_pred HHHHH-----CCC--------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 318 ELMIQ-----RGV--------NPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 318 ~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
+++.+ ... +.+..++..+...+...|++++|.+.++++.+.... ...+..+...+...|++++|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGG
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHH
Confidence 66665 211 112345566666777777777777777777766422 566666777777777777777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK 464 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 464 (603)
..++++..... .+...+..+...+...|++++|...++++...... +...+..+...+...|++++|...++++.+..
T Consensus 291 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 291 NYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp GHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 77777766533 25566777777777777777777777777665433 45566677777777788888888887777654
Q ss_pred CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC-C----HhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCC
Q 037409 465 CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP-D----VVTCSTMIHWLCK---EGQMDKANDLLLDMEAKNCV 536 (603)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 536 (603)
+.+...+..++.++.+.|++++|...++++.+..+.. + ...|..++.++.. .|++++|...++++++.. +
T Consensus 369 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 446 (514)
T 2gw1_A 369 -PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P 446 (514)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c
Confidence 4466777777888888888888888887777643321 1 2367777777877 788888888888887764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 537 PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+..++..++.++.+.|++++|...++++.+..+.
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 56777777888888888888888888888776554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=238.26 Aligned_cols=435 Identities=10% Similarity=-0.056 Sum_probs=292.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHH
Q 037409 153 TFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIID 232 (603)
Q Consensus 153 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (603)
.+......+.+.|++++|+..|+++... .|+..+|..+..++...|++++|+..++++++. .|.+..++..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHH
Confidence 4444555555566666666666665554 245555666666666666666666666666554 2344555555666
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 233 GLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDK 312 (603)
Q Consensus 233 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (603)
++...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 66666666666666666555432 23333333333333322222222222222111111111111110000001111111
Q ss_pred HHHHHHHHHHCCC---------CCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCcchH
Q 037409 313 VNRLLELMIQRGV---------NPDTVTYNSLMDGFCL---VGRISRARELFVSMVS-----KGC--------RHDVYSY 367 (603)
Q Consensus 313 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 367 (603)
...+...+..... +.+...+......+.. .|++++|...++++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1124445455554554 8999999999999988 311 1234567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
..+...+...|++++|...|+++...... ...+..+...+...|++++|...++++...... +...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHh
Confidence 78888999999999999999999886543 888899999999999999999999999876533 567888899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999866 557889999999999999999999999999987555 6778999999999999999999999
Q ss_pred HHHHHCCCCCC------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 528 LDMEAKNCVPS------EVTFCTLLRGFVQ---NNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 528 ~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+++.+.. +.+ ...+..++.++.. .|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.+
T Consensus 396 ~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 396 DLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--SEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9998753 222 3388999999999 99999999999999987654 7889999999999999999999999
Q ss_pred Hhhc
Q 037409 599 RHLL 602 (603)
Q Consensus 599 ~~~l 602 (603)
++.+
T Consensus 473 ~~a~ 476 (514)
T 2gw1_A 473 EESA 476 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=239.60 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=136.2
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC---------hHHHHH
Q 037409 138 VLGRILRSCFTPN-TVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRN---------TLVALK 207 (603)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~ 207 (603)
+.+++.+.+.... ..+++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .++|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 3344444443333 234666777777777777777777777777777777777777777765543 466777
Q ss_pred HHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 208 LFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
+|++|...+ ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 92 lf~~M~~~G---~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 92 IFKQMIVDK---VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHTT---CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777777665 66777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 288 NGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL 341 (603)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
.|+.||..+|+.|+.+|++.|++++|.+++++|.+.+..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777766654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=239.03 Aligned_cols=184 Identities=16% Similarity=0.201 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD---------WKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLF 410 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (603)
|++++|.++|++|.+.+..|+..||+.++..|.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555445555555554444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-25 Score=225.94 Aligned_cols=437 Identities=12% Similarity=0.040 Sum_probs=328.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLING 195 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
...+..++..+.+.|++++|...|+++++..+. +..++..+...|.+.|++++|++.|+++.+.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456778888999999999999999999988644 78899999999999999999999999998875 5567888999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcC
Q 037409 196 LCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRN--INPNVITYNSLICGFCCVD 273 (603)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 273 (603)
+...|++++|+..|+ .... .|+. ....+..+...+...+|...++.+.... ..+........+..+....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~-----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL-----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHH-HHhc-----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999996 4332 1221 2223445556666788999998886641 1111122234455566677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVV-TFNAMINYNCKD--------GKMDKVNRLLELMIQRGVNPDT-------VTYNSLMD 337 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~ 337 (603)
+.+.+...+...... .+... ....+...+... |++++|..+++++.+..+. +. .++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 777666555443322 22222 333333333322 3788999999999876433 22 24666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGD 417 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (603)
.+...|++++|.+.++.+.+.. |+...+..+...+...|++++|...|+++..... .+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHH
Confidence 8888999999999999999874 4577788888899999999999999999887643 367889999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999876433 45678888999999999999999999998875 66788999999999999999999999999887
Q ss_pred CCCCC-----CHhHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 498 KGPIP-----DVVTCSTMIHWLCKE----------GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 498 ~~~~p-----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
..+.. ....+..++.++... |++++|+..++++++.. +.+..++..++.+|.+.|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 53221 122345556778888 99999999999999875 567888999999999999999999999
Q ss_pred HHHHHCCCC
Q 037409 563 HKMAAEKLV 571 (603)
Q Consensus 563 ~~~~~~~~~ 571 (603)
+++++..+.
T Consensus 486 ~~al~~~~~ 494 (537)
T 3fp2_A 486 EDSAILART 494 (537)
T ss_dssp HHHHHHC--
T ss_pred HHHHHhCCC
Confidence 999987665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=222.00 Aligned_cols=437 Identities=11% Similarity=0.052 Sum_probs=324.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
...|..++..+.+.|++++|+..|+++++.. |.++.++..++.++...|++++|...++++++..+. +..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4667888899999999999999999998876 678888999999999999999999999999887644 77888889999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
+...|++++|+..|+.+ .. .|+.. ...+..+...+...+|...++++...... ..+........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEG-RGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCcc-ccccccchHhHHHHHHHhcCh
Confidence 99999999999999644 22 23322 22244555566667888888888764211 011111223445555666666
Q ss_pred hHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 037409 241 DKAKELLLQMKDRNINPNV-ITYNSLICGFCC--------VDDWKEAKCLFIEMMDNGVQPD-------VVTFNAMINYN 304 (603)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 304 (603)
+.+...+...... .+.. .....+...+.. .|++++|..+++++.+.. +.+ ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 6665554443322 1121 123333333322 247889999999988764 223 23466677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 305 CKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 88999999999999998874 447788888999999999999999999998874 346678888999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK 464 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 464 (603)
..|+++...... +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999886433 5678888999999999999999999999876433 56678888999999999999999999987542
Q ss_pred C-----CCChHHHHHHHHHHHhC----------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 037409 465 C-----ELRIETYNCLINGLCKM----------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLD 529 (603)
Q Consensus 465 ~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 529 (603)
. ......+.....++.+. |++++|...|+++.+..+. +...+..++.++...|++++|.+.|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 11223355566778787 9999999999999997665 788899999999999999999999999
Q ss_pred HHHCC
Q 037409 530 MEAKN 534 (603)
Q Consensus 530 ~~~~~ 534 (603)
+++..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-24 Score=214.00 Aligned_cols=317 Identities=13% Similarity=0.066 Sum_probs=232.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 037409 65 AVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILR 144 (603)
Q Consensus 65 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 144 (603)
+...|.+++..+|. +...|..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|...++++.+
T Consensus 11 ~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444455554443 67788888889999999999999999888764 56788888888889999999999999998888
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH---HHHHHH------------HHHHHhcCChHHHHHHH
Q 037409 145 SCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV---VTFNTL------------INGLCRTRNTLVALKLF 209 (603)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~ 209 (603)
.++. +..++..++..|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|+..|
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7544 67788888889999999999999999988763 2333 455544 44478889999999999
Q ss_pred HHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 210 EEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG 289 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 289 (603)
+++.+. .+.+...+..++.+|...|++++|.+.|+++.+.. +.+..++..++..|...|++++|+..|+++....
T Consensus 167 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 167 DKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999886 35677888889999999999999999999887753 3467888889999999999999999999888753
Q ss_pred CCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 290 VQPDVVTFNAM------------INYNCKDGKMDKVNRLLELMIQRGVNPD----TVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 290 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
+.+...+..+ ...+.+.|++++|...++++.+..+. + ...+..+...+.+.|++++|++.++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444443 66677777777777777777765322 2 2356666677777777777777777
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037409 354 SMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE 393 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 393 (603)
.+.+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 776653 334566777777777777777777777777664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-24 Score=212.39 Aligned_cols=392 Identities=11% Similarity=0.009 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELL 247 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 247 (603)
..+...+.++.... +.+...+..++..+.+.|++++|+.+|+++.+. .+.+..++..++.++...|++++|...|
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34445555555442 445667788888888888888888888888876 3556778888888888888888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 248 LQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDV---VTFNAMINYNCKDGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (603)
+++.+.+ +.+...+..++..|...|++++|...|+++.+.. +.+. ..+..+...+..
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~------------------ 143 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM------------------ 143 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH------------------
Confidence 8887763 3356777888888888888888888888887753 2233 445554433111
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 037409 325 VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNT 404 (603)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 404 (603)
..+..+...+...|++++|.+.++.+.+.. +.+...+..++.+|.+.|++++|+..|+++..... .+..++..
T Consensus 144 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 216 (450)
T 2y4t_A 144 -----QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYK 216 (450)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 012223334555666666666666666553 23455566666666677777777777766665422 25566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCC----
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATY------------IDGLCKNGFVLEAVQVFQAIRNCKCELR---- 468 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~---- 468 (603)
+...|...|++++|+..++++....+. +...+..+ +..+...|++++|...|+++.+.. +.+
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~ 294 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYT 294 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHH
Confidence 667777777777777777766654222 23333332 677888888999988888888754 223
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
..++..++.++.+.|++++|...++++.+..+. +...|..++.+|...|++++|+..++++++.. +.+...+..+..+
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 347788888888899999999999888876544 67888888888999999999999999888864 4456677766633
Q ss_pred ------------HHhcC-----CHHHHHHHHHH-HHHCCCCC-CC-------HHHHHHHHHHHHcCCcHHHHH
Q 037409 549 ------------FVQNN-----KKSKVVVLLHK-MAAEKLVV-SD-------LSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 549 ------------~~~~g-----~~~~a~~~~~~-~~~~~~~~-~~-------~~~~~~l~~~~~~~g~~~eA~ 595 (603)
|...| +.+++.+.+++ ..+..+.. ++ ...+..+..+|...|+.+.+.
T Consensus 373 ~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44444 56777888887 44443321 12 225667777777777765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-21 Score=183.74 Aligned_cols=334 Identities=10% Similarity=0.017 Sum_probs=229.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 302 (603)
++..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556667777777777777777777776653 2356677777777777777777777777777653 335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 303 YNCKDGKMDKVNRLLELMIQRGVN--PDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
.+...|++++|...++++.+..+. .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665320 12222222211100 00122234566677777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 460 (603)
++|+..++++....+ .+...+..+...+...|++++|...++++....+ .+...+..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766533 3556677777777777777777777777766532 25666777777777777777777777777
Q ss_pred HHcCCCCChHHHH------------HHHHHHHhCCChhHHHHHHHHHhhCCCCCCH----hHHHHHHHHHHHcCChhHHH
Q 037409 461 RNCKCELRIETYN------------CLINGLCKMGRLKTACKLFHRLQHKGPIPDV----VTCSTMIHWLCKEGQMDKAN 524 (603)
Q Consensus 461 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 524 (603)
.+.. +.+...+. .++..+.+.|++++|...++++.+..+. +. ..+..++.++...|++++|+
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7654 33444332 3366788899999999999998886544 33 23556778889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Q 037409 525 DLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 588 (603)
..++++++.. +.+..++..++.++...|++++|...++++++..+. +......+..+....
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN--DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHH
Confidence 9999998874 557888999999999999999999999999986654 677777777665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-19 Score=181.79 Aligned_cols=356 Identities=10% Similarity=0.004 Sum_probs=171.8
Q ss_pred CHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccC
Q 037409 150 NTVTFNFLINGLCA----EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICK 221 (603)
Q Consensus 150 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 221 (603)
+...+..+...|.. .+++++|+..|++..+.| +..++..|...|.. .+++++|+++|++..+.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----
Confidence 44555555555555 555666666665555432 34455555555555 555566666665555432
Q ss_pred CChhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 037409 222 PDVVTYNSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 222 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 34444455555554 455555555555555443 34445555555544 445555555555555443 3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCcc
Q 037409 294 VVTFNAMINYNCK----DGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL----VGRISRARELFVSMVSKGCRHDVY 365 (603)
Q Consensus 294 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 365 (603)
...+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +..
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4444445555544 455555555555554443 23344444444443 445555555555544432 233
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 366 SYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
.+..+..+|... ....+++++|+..|++..+.+ +...+..+...+.
T Consensus 257 a~~~lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 257 AQFRLGYILEQG-------------------------------LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp HHHHHHHHHHHT-------------------------------TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-------------------------------CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 333444444440 000444444544444444332 2233333444444
Q ss_pred hC-----CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC---ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH-
Q 037409 446 KN-----GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG---RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK- 516 (603)
Q Consensus 446 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 516 (603)
.. +++++|...|++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 43 45555555555544432 2344444444444433 4455555555555431 34444555555554
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 517 ---EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 517 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 569 (603)
.+++++|+.+|+++.+.+ +...+..|+..|.. .+++++|..+++++.+.+
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 455555555555555432 34444455555544 455555555555555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-21 Score=182.09 Aligned_cols=314 Identities=11% Similarity=0.066 Sum_probs=231.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMD 337 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34556666666667777777777777666553 334566666666666666666666666666655322 4455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCR--HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
.+...|++++|.+.++++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666666654210 01111111111100 11233346788899999
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
++|+..++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987643 367888899999999999999999999999865 668899999999999999999999999999
Q ss_pred hhCCCCCCHhHHH------------HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHH
Q 037409 496 QHKGPIPDVVTCS------------TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV----TFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 496 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~ 559 (603)
.+..+. +...+. .++..+...|++++|+..++++.+.. +.+.. .+..++.++...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 987554 444443 23667899999999999999999875 33442 3556889999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 560 VLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..++++++..+. ++..+..++.+|...|++++|.+.+++.+
T Consensus 293 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 293 RICSEVLQMEPD--NVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999987654 88999999999999999999999999875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-19 Score=176.37 Aligned_cols=365 Identities=12% Similarity=0.006 Sum_probs=264.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhH
Q 037409 98 DTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA----EGRIME 169 (603)
Q Consensus 98 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 169 (603)
..++..++...+.| ++.....+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44567777776654 78888889999988 899999999999999874 67888889999998 899999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHh----cCChh
Q 037409 170 AARLFKKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK----DGFVD 241 (603)
Q Consensus 170 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 241 (603)
|.+.|++..+.| +..++..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .++++
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999998864 67788888899988 889999999999998763 67788888888887 88999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK----DGKMDKV 313 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 313 (603)
+|.+.|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 77889999999988 899999999999999875 66788888888886 7899999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-----CChHHHH
Q 037409 314 NRLLELMIQRGVNPDTVTYNSLMDGFCL----VGRISRARELFVSMVSKGCRHDVYSYNILINANCKD-----QKVEDAV 384 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~ 384 (603)
..++++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|... +++++|+
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999998775 45666777777777 788888888888887664 445566666666665 6666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----CCCHHHHHHHH
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVG---NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK----NGFVLEAVQVF 457 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 457 (603)
..|++..+.+ +...+..+...|...| ++++|++.+++..+.+ ++..+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6666666542 3344444444444433 4455555555544432 33344444444444 44444444444
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHh----CCChhHHHHHHHHHhhC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCK----MGRLKTACKLFHRLQHK 498 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 498 (603)
++..+.+ ++..+..+...|.+ .+++++|...|++..+.
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444432 23444444444444 44444444444444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-19 Score=179.81 Aligned_cols=436 Identities=11% Similarity=0.061 Sum_probs=230.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 037409 68 FFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCF 147 (603)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 147 (603)
+|++++..+|. +..+|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|++++...
T Consensus 1 ~le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 1 MAEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp CHHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred ChhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 36777777765 8889999998 478899999999999999874 6678889999999999999999999999998874
Q ss_pred CCCHhhHHHHHHHH-HhcCCHhHHHH----HHHHHHh-cCCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHH
Q 037409 148 TPNTVTFNFLINGL-CAEGRIMEAAR----LFKKLNV-FACDP-NVVTFNTLINGLCR---------TRNTLVALKLFEE 211 (603)
Q Consensus 148 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~ 211 (603)
|+...|..++... ...|++++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 4777777777533 35677777665 6666554 24333 45677777776654 5667777777777
Q ss_pred HHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----
Q 037409 212 MVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMM----- 286 (603)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----- 286 (603)
.++.. .......|..........|. ..+. .++. ...+++..|..+++...
T Consensus 156 al~~P---~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCVNP---MINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTTSC---CTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhch---hhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 76520 00001222221111100110 0000 0000 02233444544444321
Q ss_pred -HCC---CCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH----HHHHH
Q 037409 287 -DNG---VQPD--------VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRI----SRARE 350 (603)
Q Consensus 287 -~~~---~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~ 350 (603)
+.. ++|+ ...|...+......+. ..++. +.+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~-------------------------------~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL-------------------------------RTEDQTLITKRVMF 259 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS-------------------------------CCSCSHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc-------------------------------cCCcchhHHHHHHH
Confidence 110 1222 1222222221111100 00111 23444
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 037409 351 LFVSMVSKGCRHDVYSYNILINANCK-------DQKVE-------DAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (603)
+|++++... +.+...|..++..+.+ .|+++ +|..+|++.+..-.+.+...|..++..+.+.|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 444444431 2233444444444433 45544 55555555554212223455555555555556666
Q ss_pred HHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhCCChhHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVPDS-FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLING-LCKMGRLKTACKLFHR 494 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 494 (603)
+|..+|+++.+..+. +. ..|...+..+.+.|++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|++
T Consensus 339 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 666666555553211 21 345555555555556666666666655432 2222333222222 2245666666666666
Q ss_pred HhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 495 LQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VP--SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 495 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.++..+. +...|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|+.+.+..+.+++.+.
T Consensus 417 al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6554333 455566666666666666666666666665421 11 1234555555555566666666666665543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-20 Score=176.85 Aligned_cols=292 Identities=9% Similarity=-0.117 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 037409 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILIN 372 (603)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (603)
+...+..+...+...|++++|..+++++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444555555555566666666666666554322 33444455555666666666666666666543 224455566666
Q ss_pred HHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 373 ANCKDQ-KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 373 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
.+...| ++++|...|+++..... .+...+..+...+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 66666666666665432 24455666666667777777777777766654322 3344555666677777777
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC--------CCCHhHHHHHHHHHHHcCChhHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP--------IPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
+|...++++.+.. +.+...+..++..+...|++++|...++++.+... ..+..++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776654 45667777777777777777777777777665321 22345677777777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HcCCcHH
Q 037409 524 NDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL-SKDKKYR 592 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 592 (603)
+..++++++.. +.+...+..++.++...|++++|.+.++++.+..+. ++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD--DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC--CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC--chHHHHHHHHHHHHHhCchh
Confidence 88888777764 456677777777888888888888888877765543 677777777777 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-19 Score=178.05 Aligned_cols=430 Identities=10% Similarity=0.033 Sum_probs=297.1
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
+++.++..+. +...|..++. +.+.|++++|..+|+++.+.- +.+...|..++..+.+.|++++|..+|++++..
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--- 75 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--- 75 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence 4555555433 7788888888 477899999999999998762 556778999999999999999999999999875
Q ss_pred ccCCChhhHHHHHHHH-HhcCChhHHHH----HHHHHhhC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHH
Q 037409 219 ICKPDVVTYNSIIDGL-CKDGFVDKAKE----LLLQMKDR-NINP-NVITYNSLICGFCC---------VDDWKEAKCLF 282 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~ 282 (603)
.|+...|..++... ...|+.++|.+ +|+..... |..| +...|...+..... .|++++|..+|
T Consensus 76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 35777777777533 35677777665 66665442 4333 45677777766544 67788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH------
Q 037409 283 IEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMV------ 356 (603)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------ 356 (603)
++.++....+....|..........|. . +...++. ...+++..|..++....
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 888763111112233222221111110 0 0111110 12334555665555422
Q ss_pred HcC---CCCC--------cchHHHHHHHHHhc----CCh----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh------
Q 037409 357 SKG---CRHD--------VYSYNILINANCKD----QKV----EDAVCLYREMLSERIRPSVITYNTLLSGLFQ------ 411 (603)
Q Consensus 357 ~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 411 (603)
+.. ++|+ ...|...+...... ++. +++..+|++++... +.+...|..++..+..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 211 2332 12344433322221 232 37788999988763 3367888888888775
Q ss_pred -cCCHH-------HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhC
Q 037409 412 -VGNLG-------DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI-ETYNCLINGLCKM 482 (603)
Q Consensus 412 -~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 482 (603)
.|+++ +|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHh
Confidence 78887 899999999863223367888889999999999999999999999854 3343 5899999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHW-LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL 561 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (603)
|++++|..+|++..+..+. +...|...+.. +...|+.++|..+|+++++.. +.+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999999986433 33333333333 346899999999999999874 55788999999999999999999999
Q ss_pred HHHHHHCCCCCCC--HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 562 LHKMAAEKLVVSD--LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 562 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+++++..++.+|+ ..+|...+......|+.+++..+.++++
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987654232 4478888888889999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-20 Score=174.11 Aligned_cols=293 Identities=12% Similarity=-0.007 Sum_probs=200.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037409 257 PNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLM 336 (603)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+..+. +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 345555566666666666666666666666543 334445555556666666666666666666655322 455566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 337 DGFCLVG-RISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 337 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
..+...| ++++|.+.++++.+.. +.+...+..+...+...|++++|+..|+++...... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 6777777777766553 224555666677777777777777777776665322 345566677777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCCChHHHHHHHHHHHhCCChhH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK--------CELRIETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 487 (603)
++|...++++.+..+. +...+..+...+...|++++|...++++.+.. .+....++..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777665432 56677777777888888888888887776531 13346788888888888899999
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 037409 488 ACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF-VQNNKKS 556 (603)
Q Consensus 488 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 556 (603)
|...++++.+..+. +...|..++.++...|++++|.+.++++++.. +.+...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999888886555 67788888888889999999999999888865 55677788888877 4555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-18 Score=174.99 Aligned_cols=424 Identities=12% Similarity=0.122 Sum_probs=316.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHH
Q 037409 113 FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSC--FTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFN 190 (603)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 190 (603)
..++.-.+..++.|...|.+.+|+++++++...+ +..+....+.++....+. +..+.....+++... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 4567777888999999999999999999998432 123556777777777766 556666666555421 1 33
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 037409 191 TLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC 270 (603)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (603)
.+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. ++.+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~--------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV--------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC--------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence 477888889999999999998632 122223332 27788999999988662 5788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (603)
..|++++|++.|.+. .|...|..++..+.+.|+++++.+.+....+.. +++...+.++.+|++.++++....
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999999664 477888889999999999999999999887764 333344458888999988885443
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037409 351 LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV 430 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (603)
+. + .++...+..+...|...|++++|...|..+ ..|..+...+.+.|++++|.+.+++..
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 32 2 335566777889999999999999999875 368899999999999999999998773
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+..+.. ....|..+
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftEL 1320 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTEL 1320 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHH
Confidence 567888889999999999998877553 2456778889999999999999999999988876533 56677777
Q ss_pred HHHHHHc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCC
Q 037409 511 IHWLCKE--GQMDKANDLLLDMEAKNCVP------SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----------KLVV 572 (603)
Q Consensus 511 ~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~ 572 (603)
...+++. ++..+++++|..-.. +++ +...|..+...|.+.|+++.|...+-+-... =..+
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv 1398 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 1398 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc
Confidence 7777764 355566666654433 333 4667888999999999999988432221110 0122
Q ss_pred CCHHHHHHHHHHHHcCC---------------cHHHHHHHHH
Q 037409 573 SDLSLSSKVVDLLSKDK---------------KYRECLNQFR 599 (603)
Q Consensus 573 ~~~~~~~~l~~~~~~~g---------------~~~eA~~~~~ 599 (603)
.++++|...+..|...+ +.+.+.+++.
T Consensus 1399 ~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 57888888888888777 6666666665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=182.00 Aligned_cols=266 Identities=12% Similarity=-0.017 Sum_probs=188.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLF 410 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (603)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..|+++....+ .+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34455555555555555555555555542 22344455555555555555555555555554422 24455555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHH---------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChHHHH
Q 037409 411 QVGNLGDALKLIDKMQLNDVVPDSFTFA---------------TYIDGLCKNGFVLEAVQVFQAIRNCKCEL--RIETYN 473 (603)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 473 (603)
..|++++|...++++....+.. ...+. ..+..+...|++++|...++++.+.. +. +..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHH
Confidence 5566666666555555433221 11111 02233348899999999999998765 33 688999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.++.+|.+.|++++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+..++..++.+|.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999987555 68899999999999999999999999999875 567888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 554 KKSKVVVLLHKMAAEKLVV---------SDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++++|...++++++..+.. .....+..++.+|...|++++|..++++-+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999998755431 127889999999999999999999887643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-16 Score=166.89 Aligned_cols=411 Identities=13% Similarity=0.130 Sum_probs=311.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG--LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
++.--...+++|...|.+.+|++++++..-.+ +..+....+.++.+..+. +..+..++..+.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 34444567888999999999999999998443 123455666677666666 556666666665422 23447
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn---------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHhC
Confidence 788889999999999999963 12223333332 6789999999988652 467899999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999664 378889999999999999999999999888764 33333445889999999988644442
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037409 318 ELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRP 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 397 (603)
. .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|++.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 335566778999999999999999999986 36899999999999999999999987 3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +.+...|..+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 6788999999999999999998876543 3356677789999999999999999999888665 556778878888
Q ss_pred HHHhC--CChhHHHHHHHHHhhCCC----CCCHhHHHHHHHHHHHcCChhHHHHH-------------HHHHHHCCCCCC
Q 037409 478 GLCKM--GRLKTACKLFHRLQHKGP----IPDVVTCSTMIHWLCKEGQMDKANDL-------------LLDMEAKNCVPS 538 (603)
Q Consensus 478 ~~~~~--g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~~~ 538 (603)
+|++- ++..++.+.|..-..... --+...|..+...|.+.|+++.|... |+..+.. ..+
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n 1400 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VAN 1400 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--ccc
Confidence 87764 356667777665443210 02567799999999999999999832 2222222 457
Q ss_pred HHHHHHHHHHHHhcC
Q 037409 539 EVTFCTLLRGFVQNN 553 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g 553 (603)
...|...+.-|...+
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 788888887777555
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=174.57 Aligned_cols=308 Identities=11% Similarity=-0.092 Sum_probs=213.9
Q ss_pred HHHhcCChhHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 233 GLCKDGFVDKAKE-LLLQMKDRNI---NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG 308 (603)
Q Consensus 233 ~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (603)
++.-.|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556677888877 7776554321 1134567777888888888888888888887764 446677777778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR 388 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 388 (603)
++++|...++++.+..+ .+..++..+...+...|++++|.+.++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 88888888888777643 35667777777777888888888888877776321 22221111000 00
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 037409 389 EMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL 467 (603)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 467 (603)
. .. ....+..+...+ ..|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 001111222233 7788999999999887654332 57788888899999999999999999988765 56
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---------
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS--------- 538 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 538 (603)
+...+..++.++...|++++|...++++.+..+. +...+..++.++...|++++|...++++++.. +.+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 327 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGA 327 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccc
Confidence 7889999999999999999999999999887554 78889999999999999999999999998753 222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 539 --EVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 539 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
..+|..++.++...|++++|..++++.+
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6889999999999999999998887544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=173.90 Aligned_cols=267 Identities=7% Similarity=-0.078 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGL 409 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (603)
..+..+...+...|++++|++.|+++++.. +.+...+..+..++...|++++|+..|+++....+ .+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 335555566666666666666666666553 23455566666666666666666666666665432 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC---------CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChHHHHHHHHH
Q 037409 410 FQVGNLGDALKLIDKMQLNDVV---------PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL--RIETYNCLING 478 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 478 (603)
...|++++|...++++.+..+. .....+..+...+...|++++|...++++.+.. +. +..++..++.+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6667777777766666543211 012233345778888999999999999998865 33 68899999999
Q ss_pred HHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 479 LCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
|...|++++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999987655 78899999999999999999999999999875 55688899999999999999999
Q ss_pred HHHHHHHHHCCCCC----------CCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 559 VVLLHKMAAEKLVV----------SDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 559 ~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
...++++++..+.. .+..++..++.++...|+.+.|....++-
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999998654321 13678899999999999999999887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-19 Score=167.29 Aligned_cols=262 Identities=10% Similarity=-0.057 Sum_probs=177.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG 413 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (603)
.+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++..... .+...+..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444432 11333344444444444444444444444444321 13344444444455555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHH-------------HH-HH-HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFA-------------TY-ID-GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLING 478 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 478 (603)
++++|...++++...... +...+. .+ .. .+...|++++|...++++.+.. +.+...+..++..
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 555555555544433211 111111 11 22 3667788999999999988766 5578899999999
Q ss_pred HHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 479 LCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
+...|++++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+..++..++.++...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987654 68889999999999999999999999999875 56788899999999999999999
Q ss_pred HHHHHHHHHCCCCCC-----------CHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 559 VVLLHKMAAEKLVVS-----------DLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.++++.+..+. . +...+..++.++.+.|++++|..++++.+
T Consensus 260 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 260 AKQLVRAIYMQVG-GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTT-SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCCc-cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999875543 1 57788999999999999999999988654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-19 Score=165.26 Aligned_cols=284 Identities=12% Similarity=0.105 Sum_probs=131.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++++|..+++++ +.| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~----~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----NEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----CCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 458899999999998 333 58999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877775 4457888999999999999999887774 467789999999999999999999999965
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 36889999999999999999999988 27899999999999999999996655542 2344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CcchHHHH
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK-GCRH------DVYSYNIL 370 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l 370 (603)
..++..|.+.|.++++..+++..+... +-....|+.+.-.|++- .+++..+.++.-.+. ++++ +...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 678899999999999999999988664 33556777777777664 333333333322221 2222 45678888
Q ss_pred HHHHHhcCChHHHHHHH
Q 037409 371 INANCKDQKVEDAVCLY 387 (603)
Q Consensus 371 ~~~~~~~~~~~~A~~~~ 387 (603)
...|.+.++++.|....
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 88888888888887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-19 Score=169.15 Aligned_cols=264 Identities=10% Similarity=-0.053 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+...|..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|...++++.+..+. +..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45567788888888888888888888888765 566778888888888888888888888888776533 5777888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCc-HHH----------HHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC--Chhh
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPN-VVT----------FNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP--DVVT 226 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 226 (603)
.|...|++++|+..|+++.+.. |+ ... +..+...+...|++++|++.|+++.+.. +. +..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~ 215 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN----GDMIDPDL 215 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS----CSSCCHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----cCccCHHH
Confidence 8888888888888888877652 22 112 2234667777777777777777777763 22 5667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK 306 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (603)
+..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..++.+
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 7777777777777777777777776652 3356677777777777777777777777776653 3346667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----------CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 307 DGKMDKVNRLLELMIQRGVN-----------PDTVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
.|++++|...++++.+.... .+..++..+..++...|+.+.+.++..
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777776654211 013445555555555666555554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-17 Score=165.17 Aligned_cols=202 Identities=14% Similarity=-0.000 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC------
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRS--------CFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA------ 181 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 181 (603)
...|+.++.++...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345566666666666666666666655432 011123455556666666666666666665543310
Q ss_pred CC-CcHHHHHHHHHHHHhc--CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHH---HHhcCChhHHHHHHHHHhhCCC
Q 037409 182 CD-PNVVTFNTLINGLCRT--RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDG---LCKDGFVDKAKELLLQMKDRNI 255 (603)
Q Consensus 182 ~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~ 255 (603)
.. ....++..+..++... +++++|++.|+++++.. |.+...+..+..+ +...++.++|++.+++..+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 00 1223444444444332 34556666666655542 2333333333333 223444555555555554432
Q ss_pred CCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 256 NPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQR 323 (603)
Q Consensus 256 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 323 (603)
+.+...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 1133333333333322 234445555555544432 233444445555555555555555555555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-17 Score=163.35 Aligned_cols=344 Identities=10% Similarity=-0.034 Sum_probs=224.0
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCC
Q 037409 61 TSNEAVYFFDCMIKMKP-SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN--------GLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~ 131 (603)
.+......+...++..+ ......|+.++.++...|++++|++.|+++++. ..+....++..++.+|...|+
T Consensus 30 ~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 30 SLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp CHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 34444444443333322 334678999999999999999999999998652 113345678889999999999
Q ss_pred cchHHHHHHHHHHCC------C-CCCHhhHHHHHHHHHhc--CCHhHHHHHHHHHHhcCCCCcHHHHHHHHHH---HHhc
Q 037409 132 TSGAFVVLGRILRSC------F-TPNTVTFNFLINGLCAE--GRIMEAARLFKKLNVFACDPNVVTFNTLING---LCRT 199 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 199 (603)
+++|...++++.+.. . .....++.....++... +++++|+..|++..+.. +.+...+..+..+ +...
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999887631 1 11345666666666554 57999999999999874 3345566655555 3456
Q ss_pred CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 037409 200 RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW 275 (603)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (603)
++.++|++.+++.++.. +.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++
T Consensus 189 ~~~~~al~~~~~al~l~----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp CCCCCTHHHHHHHHHHC----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhhcC----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 88899999999999873 5566677666655554 467889999999988763 34778899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 276 KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSM 355 (603)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 355 (603)
++|...+++..+.. +.+..++..+...|...+... .... ...........+..+.|...++.+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 264 DKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998864 445666766666554321111 1110 000001111122356777777777
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh--hHHHHHH-HHHhcCCHHHHHHHHHHHhhC
Q 037409 356 VSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI--TYNTLLS-GLFQVGNLGDALKLIDKMQLN 428 (603)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 428 (603)
.+.. +.+...+..+...|...|++++|+..|++.+.....+... .+..+.. .....|++++|+..+++..+.
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7664 3355667777788888888888888888877654332211 1122221 223456666666666665553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-18 Score=155.59 Aligned_cols=276 Identities=11% Similarity=0.048 Sum_probs=163.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHH
Q 037409 304 NCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDA 383 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 383 (603)
....|++..|+..++......+.+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666655543321111112334455666666666666654433 1233445555666666666666677
Q ss_pred HHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 384 VCLYREMLSERIRP-SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 384 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77666666554323 344455555666677777777776665 23555666666677777777777777777666
Q ss_pred cCCCCChHH--HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 463 CKCELRIET--YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 463 ~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
.. +.+... ...++..+...|++++|..+|+++.+..+. +...|+.++.++.+.|++++|++.++++++.. +.+..
T Consensus 159 ~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 159 QD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 53 222111 112223334456777777777777776443 66777777777777777777777777777764 45666
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSK-VVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
++..++..+...|+.++ +.++++++.+..+. ++.+ .+...+.+.+++|..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~--~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS--HPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC--ChHH----HHHHHHHHHHHHHHHHc
Confidence 77777777777777754 45677777765554 4332 34456666666665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=163.02 Aligned_cols=269 Identities=13% Similarity=0.002 Sum_probs=140.5
Q ss_pred hccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 037409 56 KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGA 135 (603)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 135 (603)
....|++++|+..|++++...|. +...|..++..+...|++++|...|+++.+.. +.+..++..++..+...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 33455555555555555555443 45555555555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH-HH-HHHhcCChHHHHHHHHHHH
Q 037409 136 FVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTL-IN-GLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~ 213 (603)
...++++.+..+. +...+..+... .|+......+ .. .+...|++++|.+.++++.
T Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 109 LASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp HHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 5555555544222 11122111000 0000000011 11 2445566666666666666
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 166 ~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 239 (327)
T 3cv0_A 166 EMN----PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY 239 (327)
T ss_dssp HHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 652 3455566666666666666666666666665542 2245556666666666666666666666665543 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP-----------DTVTYNSLMDGFCLVGRISRARELFVSM 355 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 355 (603)
...+..+...+...|++++|...++++.+..... +...+..+..++...|+.++|..+++..
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5566666666666666666666666665543221 2445556666666666666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-18 Score=157.45 Aligned_cols=221 Identities=10% Similarity=0.072 Sum_probs=50.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAAR 172 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 172 (603)
+.|+.++|.++++++ +++.+|+.++.++.+.|++++|++.|.+. +|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344455555555554 12235555555555555555555555331 234455555555555555555555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 037409 173 LFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 44444332 2334444555555555555555444432 133345555555555555555555555543
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037409 253 RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTY 332 (603)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 332 (603)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 24555555555555555555555544 14455555555555555555553322221 1122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 333 NSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 333 ~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
..++..|.+.|.+++|..+++..+.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 2344444444444444444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=152.21 Aligned_cols=273 Identities=12% Similarity=0.051 Sum_probs=189.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 267 CGFCCVDDWKEAKCLFIEMMDNGVQPDV--VTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
+.....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3344567777777776655432 2332 3445566777777777777765543 124455666777777777778
Q ss_pred HHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 345 ISRARELFVSMVSKGCRH-DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLID 423 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 423 (603)
.+.|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888877665333 445556666777888888888888776 3467777888888888888888888888
Q ss_pred HHhhCCCCCCHHhH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 424 KMQLNDVVPDSFTF---ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 424 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.++..++.++.++.+.|++++|+..|+++++..+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 887653 332111 122233445588999999999988874 67888999999999999999999999999988766
Q ss_pred CCCHhHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDK-ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
. +..++..++..+...|+.++ +.++++++++.+ |.++.+. ....+.+.++++..
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHH
Confidence 6 78888889999999998876 568888888864 3333332 23444455555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=145.27 Aligned_cols=198 Identities=16% Similarity=0.083 Sum_probs=154.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
++...+..+...+...|++++|+..+++..+..+. +...+..+...+...|++++|...++++.+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777777888888888888888888776433 66777778888888888888888888888766 56777888888
Q ss_pred HHHHhC-----------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 477 NGLCKM-----------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 477 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
.++... |++++|...+++..+.+|. +...|..++.++...|++++|+..|+++++.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888888 9999999999999987666 78888999999999999999999999999886 788889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
+.++...|++++|+..++++++..+. ++..+..++.++.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK--DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999987664 8888899999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=144.25 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HhhHHH
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIR--PS----VITYNT 404 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 404 (603)
.+..+...+...|++++|.+.++++.+.. .+...+..+..++...|++++|+..++++...... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34455555555566666666666555554 44555555555666666666666666555543111 11 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 484 (603)
+...+...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 6677777777777777777766532 332 23455677788888888777654 4466777888888888888
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
+++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888876555 67778888888888888888888888888765 55677888888888888888888888888
Q ss_pred HHHCC
Q 037409 565 MAAEK 569 (603)
Q Consensus 565 ~~~~~ 569 (603)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-16 Score=154.45 Aligned_cols=346 Identities=12% Similarity=-0.025 Sum_probs=163.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 87 LLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGIT---SGAFVVLGRILRSCFTPNTVTFNFLINGLCA 163 (603)
Q Consensus 87 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (603)
+...+.+.|++++|++.|+++.+.| ++..+..+...+...|+. ++|..+|++.... +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666677777777777766554 233344455555555655 6666666666543 34445555554444
Q ss_pred cC-----CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHHhcCCccCCChhhHHHHHHHHH
Q 037409 164 EG-----RIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTL---VALKLFEEMVNEFGAICKPDVVTYNSIIDGLC 235 (603)
Q Consensus 164 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (603)
.+ ++++|+..|++..+.| . ..++..|...|...+..+ ++.+.+...... .+...+..+...|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYR 152 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHH
Confidence 33 5666777777766654 2 225555566665544433 233334433332 23455556666666
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----C
Q 037409 236 KDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD---DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKD----G 308 (603)
Q Consensus 236 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 308 (603)
..+.++++......+.+.-...++..+..|...|...| +.++|++.|++..+.| +++...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 66655444443332222211223346666666666666 6667777777666665 34444444555555433 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-----Ch
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDG-F--CLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ-----KV 380 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 380 (603)
++++|..+|++.. .| ++..+..+... + ...+++++|.+.|++..+.| +...+..|..+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 6666666666665 22 33444444444 2 34566666666666666554 4445555555554 33 55
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----CCCHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQ----VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK----NGFVLE 452 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 452 (603)
++|+..|++.. . .+...+..+...|.. ..++++|...|++..+.|. ......+...|.. ..+..+
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 56666555554 1 234444444444443 2255555555555544332 1222333333332 234555
Q ss_pred HHHHHHHHHHcC
Q 037409 453 AVQVFQAIRNCK 464 (603)
Q Consensus 453 a~~~~~~~~~~~ 464 (603)
|...|+...+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 555555544433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=143.59 Aligned_cols=224 Identities=11% Similarity=0.035 Sum_probs=195.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC----HHhH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV--PD----SFTF 437 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 437 (603)
...+..+...+...|++++|+..|+++.... .+...+..+...+...|++++|...++++...... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3457778889999999999999999999876 68889999999999999999999999998764221 12 5788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE 517 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 517 (603)
..+...+...|++++|...++++.+.. |+ ...+.+.|++++|...++++....+. +...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 889999999999999999999999754 33 24566778899999999999987544 677889999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHH
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 597 (603)
|++++|+..++++++.. +.+..++..++.++...|++++|...++++++..+. ++..+..++.+|.+.|++++|.+.
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999875 667889999999999999999999999999987654 789999999999999999999999
Q ss_pred HHhhc
Q 037409 598 FRHLL 602 (603)
Q Consensus 598 ~~~~l 602 (603)
+++.+
T Consensus 230 ~~~a~ 234 (258)
T 3uq3_A 230 LDAAR 234 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-16 Score=153.34 Aligned_cols=188 Identities=14% Similarity=0.050 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHhHH
Q 037409 366 SYNILINANCKDQ---KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV----GNLGDALKLIDKMQLNDVVPDSFTFA 438 (603)
Q Consensus 366 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (603)
.+..|..+|...| +.++|++.|++..+.+.. +...+..+...|... +++++|+..|++.. . .++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4444444444444 444455555444444322 222223333333322 34555555555444 1 1222333
Q ss_pred HHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-----ChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 439 TYIDG-L--CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-----RLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 439 ~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
.+... + ...+++++|...|++..+.+ ++..+..|...|. .| ++++|...|++.. . -+...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 33333 2 23445555555555544433 3444444444444 22 5555555555544 1 134444444
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 511 IHWLCK----EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 511 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 569 (603)
+..|.. ..++++|..+|++..+.| +......|+..|.. ..+.++|..+++++.+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444443 225555555555555443 12233344444432 234555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-15 Score=139.36 Aligned_cols=228 Identities=12% Similarity=0.095 Sum_probs=113.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHhC
Q 037409 370 LINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVP--DSFTFATYIDGLCKN 447 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 447 (603)
....+...|++++|+..|+++.+..+. +...+..+...+...|++++|+..++++......+ ....+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 344444455555555555554443221 23344444445555555555555555554421111 112244555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|...++++.+.. +.+..++..++.+|...|++++|...+++..+..+. +...|..++..+...+++++|++.+
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555543 334455555556666666666666666655554333 4445555552333334666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 528 LDMEAKNCVPSEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSD------LSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 528 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+++++.. +.+...+..++.++...|+ +++|...++++.+.....|+ ...+..++.+|.+.|++++|.+++
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6655543 3344555555555555555 55555555555533211011 134555555666666666666665
Q ss_pred Hhh
Q 037409 599 RHL 601 (603)
Q Consensus 599 ~~~ 601 (603)
++.
T Consensus 245 ~~a 247 (272)
T 3u4t_A 245 KNI 247 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-16 Score=135.99 Aligned_cols=199 Identities=10% Similarity=-0.037 Sum_probs=144.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 037409 362 HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI 441 (603)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (603)
++...+..+...+.+.|++++|+..|++.+...+ .+...+..+...+.+.|++++|+..+++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3555566666667777777777777777666533 25566666777777777777777777777665432 455666666
Q ss_pred HHHHhC-----------CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 442 DGLCKN-----------GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 442 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
..+... |++++|...+++..+.. |.+...+..+..++...|++++|+..|+++.+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 677777 99999999999998876 6678889999999999999999999999999877 588889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+.++...|++++|+..++++++.. |.+...+..++.++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999875 5678888999999999999999999888764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=144.22 Aligned_cols=229 Identities=12% Similarity=0.040 Sum_probs=196.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 037409 365 YSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGN-LGDALKLIDKMQLNDVVPDSFTFATYIDG 443 (603)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (603)
..+..+...+.+.|++++|+..+++++..... +...|..+..++...|+ +++|+..++++....+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 45677778888899999999999998886443 67888889999999996 99999999999886544 77888899999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH-cCChhH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK-EGQMDK 522 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 522 (603)
+...|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..++++++.++. +...|+.++.++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999877 678899999999999999999999999999998777 88899999999999 666588
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC------
Q 037409 523 A-----NDLLLDMEAKNCVPSEVTFCTLLRGFVQNN--KKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK------ 589 (603)
Q Consensus 523 A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 589 (603)
| +..++++++.. +.+...|..++.++...| ++++|.+.++++ +..+ .++..+..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p--~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH--SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC--CCHHHHHHHHHHHHHHhcccccc
Confidence 8 58899999875 567888999999999988 689999999888 4433 58889999999999874
Q ss_pred ---cHHHHHHHHHhh
Q 037409 590 ---KYRECLNQFRHL 601 (603)
Q Consensus 590 ---~~~eA~~~~~~~ 601 (603)
.+++|+++|+++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 369999999886
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-15 Score=141.86 Aligned_cols=205 Identities=11% Similarity=-0.005 Sum_probs=102.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQ-YDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
..|++++|+..|++++..+|. +..+|+.+..++...|+ +++|+..|+++++.. +.+...|..+..++...|++++|+
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHH
Confidence 345555555555555555443 45555555555555554 555555555555543 334455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHH-----HHHHH
Q 037409 137 VVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVA-----LKLFE 210 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~ 210 (603)
..++++++..+. +..+|..+..++.+.|++++|+..|+++.+.. +.+..+|+.+..++.. .|..++| ++.|+
T Consensus 187 ~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 187 EFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 555555554333 44555555555555555555555555555442 2344455555555555 3333444 34555
Q ss_pred HHHHhcCCccCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 211 EMVNEFGAICKPDVVTYNSIIDGLCKDG--FVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
+++.. .+.+...|+.+...+...| ++++|++.+.++ +. .+.+...+..++.+|.+.
T Consensus 265 ~Al~l----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 265 EMIKL----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHH----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHH----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 55544 2334445555555555544 345555555444 21 122344444455555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-15 Score=136.96 Aligned_cols=252 Identities=11% Similarity=-0.051 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHH
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPS--VITYNTLLSG 408 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 408 (603)
.+......+...|++++|++.++++.+.. +.+...+..+..++...|++++|+..++++......++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555666666666666666666653 22344566666666666777777776666665321111 2235666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHH
Q 037409 409 LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTA 488 (603)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 488 (603)
+...|++++|+..+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776654322 44566667777777777777777777766553 44566666666333344577777
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 037409 489 CKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQ---MDKANDLLLDMEAKN-CVPS------EVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 489 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a 558 (603)
...|+++.+..+. +...+..++.++...|+ +++|+..++++++.. -.|+ ..++..++..|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777775444 46666667777777776 677777777766541 0122 24566777777778888888
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Q 037409 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 588 (603)
...++++++..+. ++.....+.......
T Consensus 241 ~~~~~~al~~~p~--~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPT--NKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTT--CHHHHHHHC------
T ss_pred HHHHHHHHhcCcc--HHHHHHHhhhhhccc
Confidence 8888888776554 666665555544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=140.07 Aligned_cols=248 Identities=12% Similarity=-0.054 Sum_probs=179.4
Q ss_pred ccCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 037409 57 SGNITSNEAVYFFDCMIKMKPS---PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITS 133 (603)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (603)
...|++++|+..|++++...+. .+..+|..++..+...|++++|+..|+++++.+ +.+..++..++.++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3468899999999999987432 247788999999999999999999999999875 667888999999999999999
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 134 GAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
+|...++++.+..+. +..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999887543 6778888889999999999999999998876 4554444445555567789999999998888
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINP---NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGV 290 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 290 (603)
... +++...+ .++..+...++.++|.+.+.......... +...+..+...|...|++++|...|++.....
T Consensus 172 ~~~----~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 172 EKS----DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHS----CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hcC----CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 763 3444444 36667777778888888888776542110 14566666777777777777777777776553
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 291 QPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
|+. +.....++...|++++|...+
T Consensus 246 -p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHC----
T ss_pred -chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 221 122233444555555555444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=134.51 Aligned_cols=216 Identities=15% Similarity=0.082 Sum_probs=155.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
....+..+...+...|++++|...|+++..... .+...+..+...+...|++++|+..++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 345566667777778888888888888776533 3567777788888888888888888888776543 26677778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
.+...|++++|...++++.+.. +.+...+..++..+.+.|++++|...++++.+..+. +...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888899999999988888765 557788888888899999999999999988886554 67788888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 523 ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
|+..++++.+.. +.+..++..++.++...|++++|...++++.+..+. +...+..+..+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~l~ 237 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD--HMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT--CHHHHHHHTC--
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc--hHHHHHHHHHHH
Confidence 999999988875 566788888999999999999999999999886654 666655554433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=131.27 Aligned_cols=204 Identities=13% Similarity=-0.059 Sum_probs=160.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG 443 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (603)
...+..+...+...|++++|...|+++..... .+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 45677777888888888888888888877532 35677888888888888888888888888765432 56777778888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
+...|++++|.+.++++.+.+. +.+...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888876222 335677788888888888888888888888876554 67778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 523 ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
|...++++.+.. +.+...+..++..+...|++++|.++++++.+..+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 888888888764 566777888888888888888888888888876554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-12 Score=129.88 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI---TSGAFV 137 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~ 137 (603)
...+-+..|++.+..+|. |..+|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 345677788888888775 89999999999999999999999999998874 7777888888888888888 999999
Q ss_pred HHHHHHHCCC-CCCHhhHHHHHHHHHhcCCH--------hHHHHHHHHHHh-cCC-CCc-HHHHHHHHHHHHh-------
Q 037409 138 VLGRILRSCF-TPNTVTFNFLINGLCAEGRI--------MEAARLFKKLNV-FAC-DPN-VVTFNTLINGLCR------- 198 (603)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 198 (603)
+|++.+...+ +|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999988742 36788888887766665543 234467776554 455 443 4677777776543
Q ss_pred --cCChHHHHHHHHHHHH
Q 037409 199 --TRNTLVALKLFEEMVN 214 (603)
Q Consensus 199 --~g~~~~A~~~~~~~~~ 214 (603)
.++.+.+..+|+.++.
T Consensus 205 eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 2345566677777664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=161.42 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKD---RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAM 300 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 300 (603)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 301 INYNCKDGK-MDKVNRLLELMIQRGVNPDTVTYNSLMDG 338 (603)
Q Consensus 301 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (603)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 666666655 34556666666666666666666655543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-12 Score=132.77 Aligned_cols=433 Identities=9% Similarity=0.040 Sum_probs=253.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---HhHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR---IMEAAR 172 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 172 (603)
...+.+..|++.+..+ +.|...|..++..+.+.+.++.++.+|++++..- +.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666667776665 6788899999998888889999999999988873 4467788888888888888 999999
Q ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHH--------
Q 037409 173 LFKKLNVFA-CDPNVVTFNTLINGLCRTRNT--------LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLC-------- 235 (603)
Q Consensus 173 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 235 (603)
+|++..... .+|++..|...+....+.++. +...++|+.++..-+...+.+...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999987753 137888888887766665543 334578888776543201234567877776543
Q ss_pred -hcCChhHHHHHHHHHhhCCCCCChhhHHH---HHHHHH----------hcCCHHHHHHHHHHHHHC--CC----C----
Q 037409 236 -KDGFVDKAKELLLQMKDRNINPNVITYNS---LICGFC----------CVDDWKEAKCLFIEMMDN--GV----Q---- 291 (603)
Q Consensus 236 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~----------~~~~~~~A~~~~~~~~~~--~~----~---- 291 (603)
..++++.+..+|++........-..+|.. +...+. ...+++.|...+.++... ++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34567888888888875311111223322 111110 011233344444433211 11 0
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 037409 292 -------P-----D---VVTFNAMINYNCKDG-------KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRAR 349 (603)
Q Consensus 292 -------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 349 (603)
| + ...|...+..--..+ ..+.+..+|++++..- +-....|...+..+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 0 0 123444443322222 1223445666666552 235666666666666667766775
Q ss_pred -HHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCC------------CHhhHHHHHH
Q 037409 350 -ELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER---------IRP------------SVITYNTLLS 407 (603)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~------------~~~~~~~l~~ 407 (603)
++|+..... ++.+...+-..+....+.|++++|.++|++++... ..| ....|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 777777654 23344445556666666777777777777766421 002 1234566666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChh
Q 037409 408 GLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN-GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLK 486 (603)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 486 (603)
...+.|+.+.|..+|....+.........|...+..-.+. ++.+.|..+|+..++. .+.+...+...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 6666677777777777766541111222332222222233 3467777777776664 2445566666666666677777
Q ss_pred HHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 487 TACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.|..+|++.....+.+ ....|..++..-...|+.+.+..+.+++.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777654321 2345666666666677777777777777765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-13 Score=126.76 Aligned_cols=225 Identities=11% Similarity=-0.035 Sum_probs=187.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHH
Q 037409 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK----DQKVEDAVCLYREMLSERIRPSVITYN 403 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 403 (603)
++..+..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677788888888999999999999988843 55677788888888 899999999999988864 677788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 037409 404 TLLSGLFQ----VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK----NGFVLEAVQVFQAIRNCKCELRIETYNCL 475 (603)
Q Consensus 404 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (603)
.+...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 899999999999888764 66778888888888 899999999999888765 56778888
Q ss_pred HHHHHh----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 476 INGLCK----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----EGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 476 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
...|.. .+++++|...|++..+.+ +...+..++..|.. .+++++|+..++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 889999999999888863 56778888888888 899999999999988864 2677788888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCC
Q 037409 548 GFVQ----NNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 548 ~~~~----~g~~~~a~~~~~~~~~~~~ 570 (603)
.|.. .+++++|.++++++.+.++
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888 8899999999999888764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-15 Score=134.53 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=162.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777888899999999999999999876433 67888889999999999999999999999876 567899999999
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987655 78889999999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 558 VVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|...++++.+..+. +...+..++.+|.+.|++++|.+.+++++
T Consensus 178 A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG--HADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999987654 78899999999999999999999999864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=161.66 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 037409 185 NVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNS 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 264 (603)
-..+|+++|.+|++.|+.++|.++|++|.+....+..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776665321111567777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 265 LICGFCCVDD-WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK 306 (603)
Q Consensus 265 l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (603)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 46677777777777777777777766654433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-13 Score=125.35 Aligned_cols=224 Identities=10% Similarity=-0.072 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHhhHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGAFVVLGRILRSCFTPNTVTFN 155 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (603)
++.++..+...+...|++++|+..|+++.+. .+..++..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777777788888888888888887763 355667777777777 777888888887777764 566777
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCCChhhH
Q 037409 156 FLINGLCA----EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKPDVVTY 227 (603)
Q Consensus 156 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (603)
.+...|.. .+++++|+..|++..+.+ +..++..+...+.. .+++++|++.|++..+.+ +...+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~ 149 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------DGDGC 149 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------cHHHH
Confidence 77777777 777888888877777653 56677777777777 777778887777777642 45566
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037409 228 NSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPDVVTFNA 299 (603)
Q Consensus 228 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 299 (603)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 666677766 777777777777776653 45666667777777 777777777777777654 2556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 300 MINYNCK----DGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 300 l~~~~~~----~~~~~~a~~~~~~~~~~~ 324 (603)
+...|.+ .+++++|...+++..+.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666666 677777777777776664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-14 Score=128.19 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGL 409 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (603)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++..... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 445555566666666666666666666543 22445555566666666666666666666655422 2455556666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHH
Q 037409 410 FQVGNLGDALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTA 488 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 488 (603)
...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665522222 33455555566666666666666666666544 34455666666666666666666
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 489 CKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 489 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
...++++.+..+. +...+..++..+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666654433 4555566666666666666666666666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-14 Score=125.68 Aligned_cols=205 Identities=9% Similarity=-0.083 Sum_probs=163.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
+...+..+...+...|++++|...|+++..... .+...+..+...+...|++++|...++++..... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 456677788888889999999999988887533 3567788888888889999999999988876543 36677788888
Q ss_pred HHHhC-CCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 443 GLCKN-GFVLEAVQVFQAIRNCKC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 443 ~~~~~-g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
.+... |++++|...++++.+.+. +.+...+..++.++...|++++|...++++.+..+. +...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 88888 999999999988887322 233677888888888899999999999888886554 677888888888889999
Q ss_pred hHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 521 DKANDLLLDMEAKNCV-PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
++|...++++.+.. + .+...+..+...+...|+.+++..+++.+.+..+.
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 99999998888765 4 56777777788888889999888888888765543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-14 Score=124.41 Aligned_cols=203 Identities=9% Similarity=-0.072 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+...|..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+..+. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 56677777888888888888888888877664 455667777777777778888888877777776433 5667777777
Q ss_pred HHHhc-CCHhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 160 GLCAE-GRIMEAARLFKKLNVFACDP-NVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 160 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|+..++++.+. .+.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA----QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHc
Confidence 77777 77777777777776622222 2456667777777777777777777777765 244566667777777777
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777665432135555666666666677777777777666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-14 Score=121.35 Aligned_cols=168 Identities=11% Similarity=0.057 Sum_probs=119.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+...|..+...|...|++++|++.|++..+..+. +...+..+..++...|++++|...++.+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5566777777777777777777777777665433 56667777777777777777777777776654 446666777777
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
.+...++++.|...+.+..+..+. +...+..++.++...|++++|++.|+++++.+ |.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 777777777777777777776554 56677777777777777777777777777764 4566677777777777777777
Q ss_pred HHHHHHHHHHCC
Q 037409 558 VVVLLHKMAAEK 569 (603)
Q Consensus 558 a~~~~~~~~~~~ 569 (603)
|.+.++++++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 777777777643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=132.99 Aligned_cols=223 Identities=12% Similarity=-0.017 Sum_probs=114.5
Q ss_pred HhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHh
Q 037409 92 AKNKQYDTVVSLFKRLNSNGL---FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIM 168 (603)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (603)
...|++++|+..|+++.+... +.+..++..++..+...|++++|...++++.+..+. +..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 345666677777776665421 112345555666666666666666666666665332 4556666666666666666
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 037409 169 EAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLL 248 (603)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 248 (603)
+|+..|++..+.. +.+..++..+...+...|++++|++.|+++.+.. |+.......+..+...|++++|...++
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666665542 3345556666666666666666666666666542 222222233333344555666666665
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 249 QMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ---PDVVTFNAMINYNCKDGKMDKVNRLLELMIQR 323 (603)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 323 (603)
...... +++...+ .++..+...++.++|...+++....... .+...+..+...+.+.|++++|...++++...
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 544431 2222222 2444445555555555555554432100 00233444444444444444444444444433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-13 Score=126.66 Aligned_cols=218 Identities=11% Similarity=0.028 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 037409 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAK-------NKQY-------DTVVSLFKRLNS-NGLFPDLFVLNLLINCLC 127 (603)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 127 (603)
+.|+..|++++...|. ++..|..++..+.. .|++ ++|..+|+++++ .. +.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 6899999999998765 88999999888764 4776 899999999987 33 556678888888888
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hcCChHHH
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTV-TFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC-RTRNTLVA 205 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 205 (603)
..|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999998886433 333 78888888888889999999998888764 334445544333322 36888888
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRN-INP--NVITYNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 282 (603)
.++|+++++. .|.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.++|..++
T Consensus 189 ~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 189 FKIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888876 35567778888888888888888888888888752 343 3557777777777788888888888
Q ss_pred HHHHHC
Q 037409 283 IEMMDN 288 (603)
Q Consensus 283 ~~~~~~ 288 (603)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=145.32 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCcch
Q 037409 296 TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDT----VTYNSLMDGFCLVGRISRARELFVSMVSK----G-CRHDVYS 366 (603)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 366 (603)
.+..+...+...|++++|...++++.+.... +. ..+..+...+...|++++|.+.++++.+. + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4445556677777777777777777766332 22 35666667777777777777777776543 1 0112244
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCC
Q 037409 367 YNILINANCKDQKVEDAVCLYREMLSER-----IRPSVITYNTLLSGLFQVGN 414 (603)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 414 (603)
+..+...|...|++++|...++++.... ......++..+...|...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 5555666666666666666666654420 01112344455555555555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-14 Score=140.89 Aligned_cols=213 Identities=10% Similarity=-0.057 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 037409 380 VEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL-GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQ 458 (603)
Q Consensus 380 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 458 (603)
+++++..+++..... +.+...+..+...+...|++ ++|+..|++..+..+. +...+..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555444332 23455566666666666666 6666666666554322 45566666666666677777777766
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhC---------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc--------CChh
Q 037409 459 AIRNCKCELRIETYNCLINGLCKM---------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE--------GQMD 521 (603)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 521 (603)
++.+.. |+...+..+..++... |++++|...++++.+..+. +...|..++.+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666543 3456666666666666 7777777777777665544 566677777777666 6777
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 522 KANDLLLDMEAKNCV---PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+|+..|+++++.. + .+...+..++.+|...|++++|...++++.+..+. +...+..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA--WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777653 3 36666777777777777777777777777765543 6666677777777777777777655
Q ss_pred Hh
Q 037409 599 RH 600 (603)
Q Consensus 599 ~~ 600 (603)
++
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=141.77 Aligned_cols=302 Identities=13% Similarity=0.044 Sum_probs=158.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD----VVTFNAMINYNCKDGKMDKVNRLLELMIQR----GVNP-D 328 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 328 (603)
....+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...++++... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455556666667777777777777666653 122 234555666666666666666666665432 1111 1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037409 329 TVTYNSLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLS 407 (603)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 407 (603)
..++..+...+...|++++|...++++.+.... .+. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 234445555555566666666666555554100 000 000123344444
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHhh----CCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 408 GLFQVGN--------------------LGDALKLIDKMQL----NDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 408 ~~~~~~~--------------------~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
.+...|+ +++|...+++... .+..+ ...++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444 5555555444321 11011 123455555666666666666666666553
Q ss_pred cCC-CC----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 463 CKC-EL----RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 463 ~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
... .+ ...++..++.+|...|++++|...+++..+.... ++ ..++..++..+...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 01 1235666666677777777777777666542111 01 34556666667777777777777766654
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHcCCcH
Q 037409 533 KNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVSDLSLSSKVVDLLSKDKKY 591 (603)
Q Consensus 533 ~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~ 591 (603)
... ..+ ..++..++.+|...|++++|...++++.+. +..+....++..++.++...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 310 011 345566677777777777777777766542 11112244555666666665544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=141.60 Aligned_cols=270 Identities=13% Similarity=0.036 Sum_probs=180.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHhhH
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHD----VYSYNILINANCKDQKVEDAVCLYREMLSE----RIRP-SVITY 402 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~ 402 (603)
+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++++... +..| ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444444555555555555555544421 11 123444455555555555555555544321 1111 13345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCHHhHHHHHHHHHhCCC--------------------HHHHHHHH
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDV-----VPDSFTFATYIDGLCKNGF--------------------VLEAVQVF 457 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 457 (603)
..+...+...|++++|...+++...... .....++..+...+...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6666677777777777777776543210 0113467778888888999 99999999
Q ss_pred HHHHHc----CC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----HhHHHHHHHHHHHcCChhHHHHHH
Q 037409 458 QAIRNC----KC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 458 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
++..+. +. +....++..+...|...|++++|...+++..+.... ++ ..++..++.++...|++++|+..+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 887642 11 122457888999999999999999999988763111 12 337888999999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 528 LDMEAKNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD----LSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 528 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+++++... .++ ..++..++..|...|++++|...++++.+......+ ...+..++.+|.+.|++++|.+++
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99875420 111 457788999999999999999999998764222112 568889999999999999999999
Q ss_pred Hhhc
Q 037409 599 RHLL 602 (603)
Q Consensus 599 ~~~l 602 (603)
++.+
T Consensus 331 ~~al 334 (406)
T 3sf4_A 331 EKHL 334 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-13 Score=116.03 Aligned_cols=163 Identities=12% Similarity=0.008 Sum_probs=92.9
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...|..+...+...|++++|+..|++..+.. |.+..++..++.+|.+.|++++|...+.......+. +...+..++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4455555555556666666666666655544 445555555666666666666666666655554433 44555555555
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRE 593 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 593 (603)
+...++++.|...++++.+.. +.+...+..++.++.+.|++++|++.++++++..+. ++..+..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHHHHHHHHHCCCHHH
Confidence 555666666666666555543 344555555566666666666666666665554443 55555556666666666666
Q ss_pred HHHHHHhh
Q 037409 594 CLNQFRHL 601 (603)
Q Consensus 594 A~~~~~~~ 601 (603)
|++.|++.
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=136.66 Aligned_cols=274 Identities=12% Similarity=0.047 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCcchH
Q 037409 297 FNAMINYNCKDGKMDKVNRLLELMIQRGVNPD----TVTYNSLMDGFCLVGRISRARELFVSMVSK----GCR-HDVYSY 367 (603)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 367 (603)
+......+...|++++|...++++.+.... + ...+..+...+...|++++|.+.++++... +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455566666666666666666655322 2 234555555666666666666666655432 100 012233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHh
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV-PDSFTFATYIDGLCK 446 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 446 (603)
..+...+...|++++|...+++...... ..+.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHH-------------------------------HhcCchHHHHHHHHHHHHHHH
Confidence 4444444445555555555444332100 00000 001234444444555
Q ss_pred CCC--------------------HHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 447 NGF--------------------VLEAVQVFQAIRNC----K-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 447 ~g~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
.|+ +++|...+++..+. + .+.....+..+...+...|++++|...+++..+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555554321 1 0112345666667777777777777777766542110
Q ss_pred -CC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 502 -PD----VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 502 -p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
++ ..++..++..+...|++++|...++++++... .++ ..++..++..+...|++++|...++++.+....
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 11 22566777777777777777777777664310 011 445667777777788888887777777643211
Q ss_pred C----CCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 572 V----SDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 572 ~----~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
. .....+..++.+|.+.|++++|..++++.+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0 124466677777788888888887777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=138.92 Aligned_cols=279 Identities=12% Similarity=0.051 Sum_probs=168.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCC
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDV----VTFNAMINYNCKDGKMDKVNRLLELMIQR----G-VNPD 328 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 328 (603)
....+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...++++.+. + .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34555667788899999999999999998874 2233 46788888999999999999999988754 1 1223
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCcchHHHHHHHHHhcCC-----------------hHHHHHH
Q 037409 329 TVTYNSLMDGFCLVGRISRARELFVSMVSK----G-CRHDVYSYNILINANCKDQK-----------------VEDAVCL 386 (603)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~ 386 (603)
..++..+...|...|++++|.+.++++.+. + .+....++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456778888999999999999999988764 1 11123467778888888888 6666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 037409 387 YREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCE 466 (603)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 466 (603)
+++.... ...... .......+..+...+...|++++|...+++..+....
T Consensus 206 ~~~al~~----------------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------HHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6654431 111100 0001123334444444555555555555444321100
Q ss_pred -C----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-----CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--
Q 037409 467 -L----RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-----PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-- 534 (603)
Q Consensus 467 -~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 534 (603)
. ....+..+..+|...|++++|...+++..+.... ....++..++.++...|++++|..+++++++..
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0 1124555555666666666666666555442110 013445556666666666666666666655431
Q ss_pred --CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 535 --CV-PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 535 --~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
.. ....++..++.+|...|++++|...++++.+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 0123455666666666666666666666664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=121.28 Aligned_cols=238 Identities=9% Similarity=0.002 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCcchHHHHHHHHHh-------cCCh-------HHHHHHH
Q 037409 330 VTYNSLMDGFCLV----GRI----SRARELFVSMVSKGCRHDVYSYNILINANCK-------DQKV-------EDAVCLY 387 (603)
Q Consensus 330 ~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~ 387 (603)
..|...+....+. ++. ++|...|++++... +.+...|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4566666654443 243 68888999998863 4466778877777653 5776 8999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 037409 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSF-TFATYIDGLCKNGFVLEAVQVFQAIRNCKCE 466 (603)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 466 (603)
++.+..-.+.+...|..++..+...|++++|..+|+++.+..+. +.. .+..++..+.+.|++++|..+|+++.+.. +
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 99987312235668889999999999999999999999875322 233 78888888889999999999999998765 4
Q ss_pred CChHHHHHHHHHHH-hCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCC--CHHHH
Q 037409 467 LRIETYNCLINGLC-KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-CVP--SEVTF 542 (603)
Q Consensus 467 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~ 542 (603)
.+...|...+.... ..|++++|..+|+++++..+. +...|..++..+...|++++|..+|+++++.. ++| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 55666655544433 369999999999999887655 78889999999999999999999999999863 344 46678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..++..+.+.|+.++|..+++++.+..+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 88888888999999999999999987665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=129.74 Aligned_cols=230 Identities=10% Similarity=-0.023 Sum_probs=154.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC----CCHHhHH
Q 037409 370 LINANCKDQKVEDAVCLYREMLSE----RIRP-SVITYNTLLSGLFQVGNLGDALKLIDKMQLND--VV----PDSFTFA 438 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 438 (603)
....+...|++++|+..|++.... +..+ ...++..+...|...|++++|+..+++..+.. .. ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777777777777777653 1111 23456777777778888888888877764321 11 1134566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----ChHHHHHHHHHHHhCCChhHHHHHHHHHhh-----CCCCCCHhHHH
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCE-L----RIETYNCLINGLCKMGRLKTACKLFHRLQH-----KGPIPDVVTCS 508 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 508 (603)
.+...|...|++++|...+++..+.... + ...++..++.+|...|++++|...+++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888877643111 1 124677888888888888888888888776 22122456678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAK----NCVPSEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
.++.++...|++++|...++++++. +-+.....+..++..+...|+ +++|..++++. +..+.....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888887754 111112235667778888888 66666666655 2221345577788
Q ss_pred HHHHHcCCcHHHHHHHHHhhc
Q 037409 582 VDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 582 ~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.+|.+.|++++|..++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 888888888888888888754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=133.15 Aligned_cols=202 Identities=15% Similarity=0.070 Sum_probs=113.9
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPG---MTSFTILLTMLAKNKQYDTVVSLFKRLNSN----GL-FPDLFVLNL 121 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 121 (603)
++.+......|++++|+..|++++...|... ...+..++..+...|++++|+..++++... +. +....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4555555567888888888888887765421 356777788888888888888888876542 11 112345566
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCC--------------------HhHHHHHHHH
Q 037409 122 LINCLCKMGITSGAFVVLGRILRSCFT-PN----TVTFNFLINGLCAEGR--------------------IMEAARLFKK 176 (603)
Q Consensus 122 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 176 (603)
+...+...|++++|...++++.+.... ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 666777777777777777666543111 11 2255566666666666 6666666655
Q ss_pred HHhc----CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCc--cCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037409 177 LNVF----ACD-PNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAI--CKPDVVTYNSIIDGLCKDGFVDKAKELLLQ 249 (603)
Q Consensus 177 ~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 249 (603)
.... +.. ....++..+...+...|++++|.+.+++..+..... ......++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4321 100 112245555556666666666666666655432000 000012444455555555555555555554
Q ss_pred Hh
Q 037409 250 MK 251 (603)
Q Consensus 250 ~~ 251 (603)
..
T Consensus 249 al 250 (338)
T 3ro2_A 249 TL 250 (338)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=135.61 Aligned_cols=216 Identities=11% Similarity=-0.046 Sum_probs=147.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGIT-SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLF 174 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 174 (603)
.+++++..+++..... +.+...+..++..+...|++ ++|...|+++++..+. +..+|..+...|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666665543 44666677777777777777 7777777777766433 5667777777777777777777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc--------
Q 037409 175 KKLNVFACDPNVVTFNTLINGLCRT---------RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD-------- 237 (603)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 237 (603)
++..+. .|+..++..+..++... |++++|++.|+++++. .+.+...|..+..+|...
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 777665 45566677777777777 7777777777777776 345566777777777776
Q ss_pred CChhHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNIN--PNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNR 315 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (603)
|++++|++.|++..+.... .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777664210 266677777777777777777777777776653 3355566777777777777777776
Q ss_pred HHHHH
Q 037409 316 LLELM 320 (603)
Q Consensus 316 ~~~~~ 320 (603)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 55444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-13 Score=138.73 Aligned_cols=162 Identities=12% Similarity=0.014 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..++.+...+.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|+..|+++++.++. +...|..++.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444555555555555555555554443 334445555555555555555555555555554333 444555555555
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 594 (603)
...|++++|++.|+++++.+ +.+...+..++.+|.+.|++++|++.++++++..+. +...+..++.+|...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHhhhhhHHHhcccHHHH
Confidence 55555555555555555443 334444555555555555555555555555544332 445555555555555555555
Q ss_pred HHHHHhh
Q 037409 595 LNQFRHL 601 (603)
Q Consensus 595 ~~~~~~~ 601 (603)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=132.39 Aligned_cols=242 Identities=14% Similarity=0.045 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSK-------GCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITY 402 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 402 (603)
.++..+...+...|++++|...++++.+. ..+.....+..+...|...|++++|...++++....
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 34555555566666666666666665542 111122334444555555555555555555444320
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCChHHHHHH
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC------KC-ELRIETYNCL 475 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 475 (603)
+.............+..+...+...|++++|...++++.+. +. +.....+..+
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 00000000112233444444455555555555555444432 11 1123445555
Q ss_pred HHHHHhCCChhHHHHHHHHHhhC------CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-------CCCC---
Q 037409 476 INGLCKMGRLKTACKLFHRLQHK------GPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-------CVPS--- 538 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~--- 538 (603)
+..+...|++++|...++++.+. +..| ...++..++.++...|++++|++.++++++.. ..+.
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 55555555555555555555442 1011 23345555555666666666666665555420 0111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 539 ----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 539 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
...+..+...+...+.+.++...++......+ .....+..++.+|.+.|++++|.+++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP--TVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11112222233334444555555555544322 24556666666666666666666666654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=111.30 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 037409 400 ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGL 479 (603)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (603)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4455566667777777777777777665432 255666666777777777777777777776654 44566677777777
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+.. +.+..++..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777665443 56666677777777777777777777776654 445666677777777777777777
Q ss_pred HHHHHHHHCCC
Q 037409 560 VLLHKMAAEKL 570 (603)
Q Consensus 560 ~~~~~~~~~~~ 570 (603)
..++++.+..+
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 77777665433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-12 Score=124.06 Aligned_cols=235 Identities=8% Similarity=-0.093 Sum_probs=114.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhhHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDN----GVQP-DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN-P-----DTVTYN 333 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 333 (603)
....+...|++++|...|++..+. +-++ ...++..+...+...|++++|...+++..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444555666666666666666543 1011 1234555555556666666666655555432100 0 112344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+...|...|++++|.+.++++.+.... .+. .....++..+...|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-------------------------------QLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-------------------------------HHHHHHHHHHHHHHHHC
Confidence 4455555555555555555554432000 000 00012344445555555
Q ss_pred CCHHHHHHHHHHHhhC----CC-CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhCC
Q 037409 413 GNLGDALKLIDKMQLN----DV-VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC----KCELRIETYNCLINGLCKMG 483 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g 483 (603)
|++++|+..+++.... +. +....++..+...+...|++++|...+++..+. +.+.....+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 5555555555554331 11 222344555555566666666666666554432 11112223455666666666
Q ss_pred C---hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 484 R---LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 484 ~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
+ +++|..++++... .......+..++..|...|++++|...++++.+
T Consensus 318 ~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 5555555555421 111233555666777777777777777777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-12 Score=112.97 Aligned_cols=208 Identities=9% Similarity=-0.041 Sum_probs=152.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
++..+......+...|++++|+..|++.+....+++...+..+..++...|++++|+..+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 556777788888888999999999988888655457777777888888889999999998888876433 5667778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC---HhHHHHHHH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRI-------ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD---VVTCSTMIH 512 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 512 (603)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+++++. .|+ ...|..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 8888899999999988888765 4455 55777888888888899999998888875 333 456777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
++...| ...++++...+ ..+...+.... ....+.+++|...++++.+..+. ++.+...+..+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~i 223 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN--RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHH
Confidence 775543 44556666654 34444443332 34456689999999999987665 66666655544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-11 Score=117.79 Aligned_cols=235 Identities=12% Similarity=0.052 Sum_probs=140.7
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMT----SFTILLTMLAKNKQYDTVVSLFKRLNSNGL-FPDL----FVLN 120 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 120 (603)
++.+.+....|++++|+..+++++...|..+.. +++.+...+...|++++|...++++..... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344555556788889999988888776554432 456677778888888888888888765310 1122 2345
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCC----CC--C-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC---C-cHHHH
Q 037409 121 LLINCLCKMGITSGAFVVLGRILRSC----FT--P-NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACD---P-NVVTF 189 (603)
Q Consensus 121 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~ 189 (603)
.+...+...|++++|...+++..... .. | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 56667777888888887777766531 11 1 2335555667777778888887777776543211 1 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHH-----HHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhh
Q 037409 190 NTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYN-----SIIDGLCKDGFVDKAKELLLQMKDRNINPN---VIT 261 (603)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 261 (603)
..+...+...|++++|...+++....... ..+...+. ..+..+...|++++|...+++.......+. ...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGN--GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhc--cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 66667777777777777777777654211 01111111 222335667777777777776654322111 113
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 262 YNSLICGFCCVDDWKEAKCLFIEMM 286 (603)
Q Consensus 262 ~~~l~~~~~~~~~~~~A~~~~~~~~ 286 (603)
+..+...+...|++++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455566666666666666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-13 Score=126.73 Aligned_cols=248 Identities=13% Similarity=0.021 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 037409 292 PDVVTFNAMINYNCKDGKMDKVNRLLELMIQR-------GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK------ 358 (603)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 358 (603)
.+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|.+.++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888999999999999999999999873 22334567888899999999999999999988764
Q ss_pred CC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 037409 359 GC-RHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTF 437 (603)
Q Consensus 359 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (603)
+. +.....+..+...+...|++++|...++++.... +.............+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQL 156 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHH
Confidence 11 1123455566666666677777776666655420 000000001112233
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC-------CCCC
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNC------K-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG-------PIPD 503 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~ 503 (603)
..+...+...|++++|...++++.+. + .+....++..++.+|...|++++|...++++.+.. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 34444445555555555555544432 1 11123345555555556666666666655555320 0111
Q ss_pred -------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 504 -------VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 504 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
...+..+...+...+.+.++...+++..... +....++..++.+|.+.|++++|.++++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333344555566666666666542 334556777788888888888888888877653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-12 Score=120.79 Aligned_cols=229 Identities=11% Similarity=0.042 Sum_probs=160.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CC-CHHhHH
Q 037409 370 LINANCKDQKVEDAVCLYREMLSERI-RPS----VITYNTLLSGLFQVGNLGDALKLIDKMQLN----DV-VP-DSFTFA 438 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 438 (603)
....+...|++++|+..|+++..... .++ ..++..+...|...|+++.|...+++.... +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888887765311 112 345677777888888888888888776532 11 11 234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhCCChhHHHHHHHHHhh-----CCCCCCHhHHH
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNC----KCE-LRIETYNCLINGLCKMGRLKTACKLFHRLQH-----KGPIPDVVTCS 508 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 508 (603)
.+...|...|++++|...+++..+. +.+ ....++..++.+|...|++++|...+++..+ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7788888889999998888877652 111 1235678888888999999999999988877 4443 366788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNC---VP-SEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
.++.++.+.|++++|...+++.++... .+ ....+..+...+...|+ +.+|..++++ .+..+.....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 888889999999999999998886421 12 23445666777777888 6777766665 22221345577788
Q ss_pred HHHHHcCCcHHHHHHHHHhhc
Q 037409 582 VDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 582 ~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..|...|++++|..++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-12 Score=130.97 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=131.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+..+++.+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..|+++++.. +.+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3566777778888888888888888887765433 56677778888888888888888888888765 556788888888
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
+|.+.|++++|++.|++.++.++. +...|+.++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888887665 67788888888888888888888888888865 4567778888888888888888
Q ss_pred HHHHHHHHHH
Q 037409 558 VVVLLHKMAA 567 (603)
Q Consensus 558 a~~~~~~~~~ 567 (603)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.1e-12 Score=110.83 Aligned_cols=194 Identities=10% Similarity=-0.030 Sum_probs=150.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
.++..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+.. +.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888899999999999999998876654677777778888999999999999999988765 55778889999
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCH-------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDV-------VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP--SEVTFCTLLR 547 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 547 (603)
.+|...|++++|...+++..+..+. +. ..|..++..+...|++++|++.++++++.+ +. +...+..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999999887554 45 457888888889999999999999998864 33 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+|...| ..+++++...+.. +...+... .....|.+++|+.++++.+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~--~~~~~~~~--~~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS--NKEKYASE--KAKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT--CHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC--CHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 885544 4445666655433 44444333 3455677899999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=105.88 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+..+. +...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 345566667777788888888887776544 456777777788888888888888888887776444 667777777788
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 594 (603)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+..+. ++..+..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877764 556777777788888888888888888887776543 677777888888888888888
Q ss_pred HHHHHhhc
Q 037409 595 LNQFRHLL 602 (603)
Q Consensus 595 ~~~~~~~l 602 (603)
.+++++.+
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-11 Score=113.00 Aligned_cols=161 Identities=10% Similarity=-0.042 Sum_probs=73.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----hhHHHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGVQPDVV----TFNAMINYNCKDGKMDKVNRLLELMIQRGVN-PDT----VTYNSL 335 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l 335 (603)
....+...|++++|...+++........+.. .+..+...+...|++++|...+++....... .+. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344555666666666666665543111211 3344445555566666666666655432110 011 123344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHhhHHH
Q 037409 336 MDGFCLVGRISRARELFVSMVSK----GCR--H-DVYSYNILINANCKDQKVEDAVCLYREMLSERIRP----SVITYNT 404 (603)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~ 404 (603)
...+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++........ ....+..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 44555556666666555555442 110 1 11223334444555555555555555544321110 1123334
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 037409 405 LLSGLFQVGNLGDALKLIDKM 425 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~ 425 (603)
+...+...|++++|...+++.
T Consensus 180 la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-11 Score=114.38 Aligned_cols=234 Identities=9% Similarity=-0.055 Sum_probs=108.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----C-CCHhhHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGV-QPD----VVTFNAMINYNCKDGKMDKVNRLLELMIQRGV-----N-PDTVTYN 333 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 333 (603)
....+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+++..+... . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566666666666666654310 011 23455555566666666666666655543210 0 0123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+...|...|++++|.+.++++.+.... ++. .....++..+...|...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQND-------------------------------RFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHC
Confidence 5555555666666666655555442000 000 00112333444444444
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCChHHHHHHHHHHHhCC
Q 037409 413 GNLGDALKLIDKMQL-----NDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK----CELRIETYNCLINGLCKMG 483 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g 483 (603)
|++++|+..+++... ..+. ...++..+...+.+.|++++|...+++..+.. .+.....+..+...+...+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 444444444444433 2111 23444455555555555555555555554321 1112223344444444455
Q ss_pred C---hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 484 R---LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 484 ~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
+ +.+|...+++... .......+..++..|...|++++|...++++.+
T Consensus 315 ~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 4455555444211 011123444556666666666666666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-12 Score=116.16 Aligned_cols=228 Identities=14% Similarity=0.032 Sum_probs=159.4
Q ss_pred HhcCChHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHHhHHHH
Q 037409 375 CKDQKVEDAVCLYREMLSE-------RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN------DVVP-DSFTFATY 440 (603)
Q Consensus 375 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 440 (603)
...|++++|+..|++.++. ..+....++..+...+...|++++|+..++++... +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766552 22234567888899999999999999999988653 2222 35678888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC-----CC-CC-CHhH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNC------K-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHK-----GP-IP-DVVT 506 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~ 506 (603)
...+...|++++|...++++.+. . .+....++..++.+|...|++++|...++++.+. +. .| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998754 1 1334678889999999999999999999998875 11 22 3567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC-------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--H-CCC-CCCC
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAK-------NC-VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA--A-EKL-VVSD 574 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~-~~~~ 574 (603)
+..++.++...|++++|+.+++++++. .. +.....+..+...+...+....+..+.+... + .+. .+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999998864 11 1223344455545544444333322221111 1 111 1134
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 575 LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
...+..++.+|.+.|++++|..++++.+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-11 Score=109.41 Aligned_cols=175 Identities=9% Similarity=-0.061 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHH
Q 037409 344 RISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE----RIRPS-VITYNTLLSGLFQVGNLGDA 418 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 418 (603)
++++|.+.|.++ ...|...|++++|...|++.... +.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666665 23456677777777777665542 11111 34566666666667777777
Q ss_pred HHHHHHHhhCCCC-CC----HHhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhCCChhH
Q 037409 419 LKLIDKMQLNDVV-PD----SFTFATYIDGLCKN-GFVLEAVQVFQAIRNCKCEL-R----IETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 419 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 487 (603)
+..+++....... .+ ..++..+...|... |++++|+..|++..+..... + ..++..++..+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7766665432100 01 23455555555554 66666666666655431100 1 2345555666666666666
Q ss_pred HHHHHHHHhhCCCCCCH------hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 488 ACKLFHRLQHKGPIPDV------VTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 488 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
|...|+++.+..+.... ..|..++.++...|++++|+..+++.++.
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666654333211 13445555566666666666666665553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-11 Score=102.88 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH-H
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW-L 514 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 514 (603)
.+......+...|++++|...++++.+.. |.+...+..+..++...|++++|...++++.+..+ +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 34456667788899999999988877654 56778888889999999999999999988887644 44443333322 2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 594 (603)
...++..+|+..++++++.. |.+...+..++.++...|++++|...++++++..+.+.+...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 23334456788899988875 55688889999999999999999999999998776634567888899999999999999
Q ss_pred HHHHHhhc
Q 037409 595 LNQFRHLL 602 (603)
Q Consensus 595 ~~~~~~~l 602 (603)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=125.12 Aligned_cols=171 Identities=11% Similarity=-0.011 Sum_probs=84.0
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 037409 410 FQVGNLGDALKLIDKMQ--------LNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCK 481 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (603)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555544 221 1123344444455555555555555555555433 3344555555555555
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 482 MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL 561 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (603)
.|++++|...|+++.+.++. +...|..++.++...|++++ ++.|+++++.+ +.+...+..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555554333 34445555555555555555 55555555543 33444555555555555555555555
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 562 LHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
++++++.++. +...+..++.++..
T Consensus 557 ~~~al~l~P~--~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRH--FTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTT--HHHHHHHHHHHTC-
T ss_pred HHhhcccCcc--cHHHHHHHHHHHHc
Confidence 5555543332 34444455555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-12 Score=102.27 Aligned_cols=145 Identities=10% Similarity=-0.096 Sum_probs=104.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
...+...|++++|+..++...... +.+...+..+...|.+.|++++|+..|++.++.++. +..+|..++.++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 334445677777777777765432 334556667778888888888888888888887665 777888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL-LHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
++|+..|+++++.+ |.+..++..++..|.+.|++++|.+. ++++++..+. ++.++.....++...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~--~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG--SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCc
Confidence 88888888888765 45677788888888888887665554 5777776654 77777777777777764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=111.97 Aligned_cols=227 Identities=12% Similarity=-0.004 Sum_probs=160.3
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCCHhhHHHH
Q 037409 340 CLVGRISRARELFVSMVSK-------GCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE------RI-RPSVITYNTL 405 (603)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 405 (603)
...|+++.|+..+++.++. ..+....++..+...|...|++++|+..++++... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 21224567888899999999999999999998764 11 2235678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCChHH
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLN------DV-VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC------K-CELRIET 471 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 471 (603)
...|...|++++|...+++.... .. +.....+..+...+...|++++|...++++.+. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998653 11 223567788889999999999999999998864 1 1234678
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHHcCChhHHHH------HHHHHHHCCCCC
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHK-------GPIP-DVVTCSTMIHWLCKEGQMDKAND------LLLDMEAKNCVP 537 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~ 537 (603)
+..++.+|...|++++|...++++.+. ...+ ....|..+.......+....+.. .++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 889999999999999999999998863 1112 23344444444444333333322 22221111 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
...++..++.+|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345688899999999999999999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-10 Score=105.49 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHcC----------CcHHHHHHHHHhhc
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS-DLSLSSKVVDLLSKD----------KKYRECLNQFRHLL 602 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~l 602 (603)
..++..|.+.|++++|+..++++++..+..+ .+..+..++.+|... |++++|+..+++++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 6778888999999999999999987665422 356788888888866 88899999988765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-10 Score=104.86 Aligned_cols=192 Identities=7% Similarity=-0.044 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHH
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD---SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLI 476 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 476 (603)
+..+...+...|++++|+..|+++....+. + ...+..+..++...|++++|...|+++.+... +.....+..+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 333334444444444444444444433211 1 23334444444444445555444444444321 11123344444
Q ss_pred HHHHh--------CCChhHHHHHHHHHhhCCCCCCHhH-----------------HHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 477 NGLCK--------MGRLKTACKLFHRLQHKGPIPDVVT-----------------CSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 477 ~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
.++.. .|++++|...|+++++..+. +... +..++.+|...|++++|+..|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444 45555555555555443322 1111 3567888899999999999999998
Q ss_pred HCCCCC---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHcCCcHHHHHH
Q 037409 532 AKNCVP---SEVTFCTLLRGFVQN----------NKKSKVVVLLHKMAAEKLVVSD-LSLSSKVVDLLSKDKKYRECLN 596 (603)
Q Consensus 532 ~~~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~ 596 (603)
+.. +. ....+..++.+|... |++++|...++++++..+..+. ......+..++.+.|+++++..
T Consensus 176 ~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 176 DAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 864 22 345778888888866 8889999999999987665221 3455666677777777665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7e-11 Score=108.48 Aligned_cols=166 Identities=13% Similarity=0.041 Sum_probs=140.7
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhH-HHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVT-CSTMI 511 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~ 511 (603)
+...+..+...+...|++++|...|+++.+.. |.+...+..++.++.+.|++++|...++++....+ +... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHH
Confidence 45566778888899999999999999999876 66889999999999999999999999999988644 4333 33334
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcH
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY 591 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (603)
..+...++.++|+..++++++.. |.+...+..++.++...|++++|...++++++..+...+...+..++.+|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 44778888999999999999886 66788999999999999999999999999998877633478899999999999999
Q ss_pred HHHHHHHHhhc
Q 037409 592 RECLNQFRHLL 602 (603)
Q Consensus 592 ~eA~~~~~~~l 602 (603)
++|...|++-+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99999888754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-10 Score=92.20 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
..++..+...|++++|..+++++.+.++. +...+..++..+...|++++|..+++++.+.+ +.+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 33444444444444444444444443322 33444444444444445555555544444432 33344444444444555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 553 NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 553 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
|++++|.++++++.+..+. +...+..++.++.+.|++++|...++++
T Consensus 83 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5555555555544443322 3444444445555555555555444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.8e-11 Score=102.14 Aligned_cols=176 Identities=9% Similarity=0.004 Sum_probs=132.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH----------------HHHHHHhCCCHHHHHHHHHHHHH
Q 037409 399 VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFAT----------------YIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
...+......+...|++++|+..|++.....+. +...+.. +..++...|++++|...|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445566778899999999999999875322 4455666 88889999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHH
Q 037409 463 CKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQ--MDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~ 540 (603)
.. |.+...+..++.++...|++++|...|+++++.+|. +...|..++.+|...|+ .+.+...+++... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 76 668899999999999999999999999999998766 78889999988876654 4455666666543 123334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
.+...+.++...|++++|...++++++.. |+......+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~---P~~~~~~~l~ 197 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRF---PSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTS---CCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 55667778888999999999999999754 4544444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-09 Score=97.59 Aligned_cols=219 Identities=9% Similarity=-0.019 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hhc---CC
Q 037409 344 RISRARELFVSMVSKGCRHDVYSYNILINANCKDQ--KVEDAVCLYREMLSERIRPSVITYNTLLSGL----FQV---GN 414 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 414 (603)
..++|++.++.++..+ +-+..+|+.-...+...+ ++++++..++.++...+. +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3457777777777763 224455666666666666 777777777777765433 445555544444 444 56
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC------hh
Q 037409 415 LGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL--EAVQVFQAIRNCKCELRIETYNCLINGLCKMGR------LK 486 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 486 (603)
+++++.+++.+.+..++ +..+|..-...+.+.|.++ ++++.++++.+.+ +-|...|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 77777777777665433 5666666666666666666 7777777777655 4466666666666666655 66
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 487 TACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK-ANDLLLDMEAKN--CVPSEVTFCTLLRGFVQNNKKSKVVVLLH 563 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (603)
++++.+++++..++. |...|+.+...+.+.|+..+ +..+.+++.+.+ -+.+...+..++.+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777776665 67777777777766666433 444555555432 13456667777777777777777777777
Q ss_pred HHHH
Q 037409 564 KMAA 567 (603)
Q Consensus 564 ~~~~ 567 (603)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.5e-09 Score=93.55 Aligned_cols=232 Identities=11% Similarity=0.008 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---C
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK--QYDTVVSLFKRLNSNGLFPDLFVLNLLINCL----CKM---G 130 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 130 (603)
...++|+..++.++..+|. +..+|+.-..++...| ++++++..++.++... |-+..+|+.-..++ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 4557999999999999887 7889999999999999 9999999999999876 55666777766655 555 7
Q ss_pred CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHh--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC------h
Q 037409 131 ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIM--EAARLFKKLNVFACDPNVVTFNTLINGLCRTRN------T 202 (603)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 202 (603)
++++++..++++.+..++ |..+|+.-...+.+.|.++ +++..++++.+.. +.|..+|+....++...+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 899999999999998655 8889988888888889888 9999999999875 5688899988888888776 8
Q ss_pred HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhH-HHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHH
Q 037409 203 LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK-AKELLLQMKDRN--INPNVITYNSLICGFCCVDDWKEAK 279 (603)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 279 (603)
+++++.+++++.. .+.|...|+.+...+.+.|+... +..+...+.+.+ -+.++..+..++..|.+.|+.++|.
T Consensus 203 ~eEl~~~~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 203 DEELNYVKDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 9999999999987 47788999988888888888544 555666665432 1336677888888888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q 037409 280 CLFIEMMDNGVQPDVVTFNA 299 (603)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~ 299 (603)
++++.+.+.--+.....|+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHH
Confidence 99988876311333444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-09 Score=93.88 Aligned_cols=242 Identities=11% Similarity=0.015 Sum_probs=157.1
Q ss_pred hccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 037409 56 KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGA 135 (603)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 135 (603)
..+.|.+..++.-.. ...+........-+.+++...|++... ..-.|....+..+.. |...+ |
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 446788888887433 333443344445567888888887752 111344334443333 33322 6
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 136 FVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC-DPNVVTFNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++++.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777654 34555556788888888999999999988866542 13566777888888999999999999998877
Q ss_pred hcCCccCC-----ChhhHHHHHHHH--HhcC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 215 EFGAICKP-----DVVTYNSIIDGL--CKDG--FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 215 ~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
. .| +..+...++.++ ...| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 165 ~-----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 165 A-----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp H-----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred c-----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 34 244555555553 3334 888899999988765 344333344445788888888888888866
Q ss_pred HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 286 MDNG---------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 286 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (603)
.+.- -+.+..++..++......|+ ++.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5420 03355666566655555676 7788888888764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-08 Score=98.74 Aligned_cols=378 Identities=10% Similarity=0.003 Sum_probs=201.3
Q ss_pred hcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HhHH
Q 037409 93 KNK-QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR-IMEA 170 (603)
Q Consensus 93 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 170 (603)
+.| +.+.|..+|++++.. -|. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887754 222 8888888888888875 4588888888877766663 4566
Q ss_pred HHHHHHHHhc-CCC-CcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCCCh-hhHHHHHHHHHhcCChhHH
Q 037409 171 ARLFKKLNVF-ACD-PNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKPDV-VTYNSIIDGLCKDGFVDKA 243 (603)
Q Consensus 171 ~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 243 (603)
..+|+..... |.. .+...|...+..+.. .++.+.+.++|+.++.. +..+. ..|...... ........+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P~~~~~~lw~~Y~~f-E~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----PMGSLSELWKDFENF-ELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----CCTTHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----hhhhHHHHHHHHHHH-HHHhccccH
Confidence 7777776652 433 356677777776542 35677788888888863 11111 122222111 111112222
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHH
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG--K-----MDKVNRL 316 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~ 316 (603)
..++.+.. +.+..|..+++.+...-...+...|...+..-...+ - .+.+..+
T Consensus 143 ~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 22222211 122333333333322100013334544444332211 0 2345667
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--
Q 037409 317 LELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER-- 394 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 394 (603)
|++++... +.+...|...+..+...|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.-
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHh
Confidence 77777653 335667777777777788888888888888876 33332222 22222122221 22221110
Q ss_pred ----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh-CCCHHHHHHHHHHHHHc
Q 037409 395 ----------IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK-NGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 395 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 463 (603)
.......|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0001234555555555666777777777777 22 11233333322221112 23577777777777664
Q ss_pred CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 464 KCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
. +.++..+...++...+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 33455556666666677777777777777631 456677766666667777777777766653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=121.17 Aligned_cols=185 Identities=9% Similarity=-0.074 Sum_probs=142.8
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 92 AKNKQYDTVVSLFKRLN--------SNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA 163 (603)
Q Consensus 92 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (603)
...|++++|+..+++++ +.. +.+...+..++.++...|++++|...++++++..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888999999999887 443 556778888888888999999999999888887544 67788888888889
Q ss_pred cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHH
Q 037409 164 EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKA 243 (603)
Q Consensus 164 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 243 (603)
.|++++|+..|++..+.. +.+...|..+..++.+.|++++ ++.|+++++.. +.+...|..+..++.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN----DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC----CchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999888764 4466778888888889999998 99999988863 56777888888899999999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCCVDD--------WKEAKCLFIEM 285 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~ 285 (603)
++.|++..+.+. .+...+..+..++...++ +++|.+.+..+
T Consensus 554 ~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 554 VRTLDEVPPTSR-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHTSCTTST-THHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHhhcccCc-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999998887632 245677777777766443 55555555444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=100.16 Aligned_cols=159 Identities=16% Similarity=0.056 Sum_probs=101.0
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 037409 52 NDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTI----------------LLTMLAKNKQYDTVVSLFKRLNSNGLFPD 115 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 115 (603)
.+......|++++|+..|++++..+|. +...|.. ++.++.+.|++++|+..|+++++.. |.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 344444678888888888888887665 5566666 7777777777777777777777665 556
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--HhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR--IMEAARLFKKLNVFACDPNVVTFNTLI 193 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
...+..++.++...|++++|...|+++++..+. +..++..+...|...|+ ...+...++..... .|....+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhHHHHHHH
Confidence 667777777777777777777777777776543 56666666666654443 33444445444321 22223344445
Q ss_pred HHHHhcCChHHHHHHHHHHHHh
Q 037409 194 NGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
.++...|++++|+..|+++++.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555667777777777777663
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-10 Score=88.72 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 515 (603)
.+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.++. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34556667777788888888887777654 446677777778888888888888888887776544 5667777888888
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 516 KEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
..|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888887764 45677777888888888888888888888876543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=95.45 Aligned_cols=145 Identities=10% Similarity=-0.077 Sum_probs=111.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
...+...|++++|+..++....... .+...+..+...|...|++++|++.|+++.+.. |.++.+|..+..+|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3445567788888888887765421 134456678888889999999999999988876 66888899999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDL-LLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
++|...|++.++.++. +...|..++.+|.+.|++++|.+. ++++++.. |.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999887666 788888899999999988776654 58888865 5567777777777777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=96.64 Aligned_cols=183 Identities=10% Similarity=-0.044 Sum_probs=99.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh---HHHH
Q 037409 399 VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV-P-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI---ETYN 473 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~ 473 (603)
...+..+...+...|++++|+..|+++....+. | ....+..+..++.+.|++++|+..|+++.+.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 344555666777888888888888888764332 1 13466677778888888888888888887654 2222 2455
Q ss_pred HHHHHHHh------------------CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 474 CLINGLCK------------------MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 474 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
.+..++.. .|++++|...|+++++..|. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 55555544 45666677777666665433 222221110000 000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS-DLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
......++..|.+.|++++|+..++++++..+..+ .+..+..++.+|.+.|++++|++.++++
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00112344455556666666666666655443311 1244555566666666666666655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-09 Score=94.52 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=64.4
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (603)
++..+++....+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 22333334444555555555555555555443331 1234445555555555555555555555555
Q ss_pred hCCCCC-----CHhHHHHHHHH--HHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 497 HKGPIP-----DVVTCSTMIHW--LCKEG--QMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 497 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 22 12223333322 22222 555555555555443 2332222222225555555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.6e-10 Score=102.01 Aligned_cols=209 Identities=9% Similarity=-0.039 Sum_probs=123.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHhHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRS----CFTP-NTVTFNFLINGLCAEGRIMEA 170 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 170 (603)
++++|...|+++ +..|...|++++|...|.+.... +..+ ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366677766665 23456677777777777666553 1111 134677777777777777777
Q ss_pred HHHHHHHHhcCC---CCc--HHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcCCccCC--ChhhHHHHHHHHHhcCChhH
Q 037409 171 ARLFKKLNVFAC---DPN--VVTFNTLINGLCRT-RNTLVALKLFEEMVNEFGAICKP--DVVTYNSIIDGLCKDGFVDK 242 (603)
Q Consensus 171 ~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 242 (603)
+..|++..+... .+. ..++..+..+|... |++++|+..|++.++.......+ ...++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777654310 111 34667777778775 88888888888877653100000 03456677777888888888
Q ss_pred HHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcC
Q 037409 243 AKELLLQMKDRNINPNV------ITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDV------VTFNAMINYNC--KDG 308 (603)
Q Consensus 243 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~ 308 (603)
|+..|++..+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++..+. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888877765322211 14566667777777777777777776653 2221 12333444443 234
Q ss_pred CHHHHHHHHHHHH
Q 037409 309 KMDKVNRLLELMI 321 (603)
Q Consensus 309 ~~~~a~~~~~~~~ 321 (603)
++++|...|+.+.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 5666666665543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-10 Score=114.79 Aligned_cols=164 Identities=12% Similarity=-0.057 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.|++++|+..+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998776433 57788889999999999999999999999866 66788999999999999999999999
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN---NKKSKVVVLLHKMAAE 568 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 568 (603)
+++..+..+. +...+..++.++...|++++|++.++++.+.. +.+...+..++.++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987665 78889999999999999999999999999875 56788899999999999 9999999999999987
Q ss_pred CCCCCCHHHHHHH
Q 037409 569 KLVVSDLSLSSKV 581 (603)
Q Consensus 569 ~~~~~~~~~~~~l 581 (603)
++. +...+..+
T Consensus 158 ~p~--~~~~~~~l 168 (568)
T 2vsy_A 158 GVG--AVEPFAFL 168 (568)
T ss_dssp TCC--CSCHHHHT
T ss_pred CCc--ccChHHHh
Confidence 765 33344333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-08 Score=97.71 Aligned_cols=381 Identities=10% Similarity=-0.009 Sum_probs=227.3
Q ss_pred hcC-CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-hHHH
Q 037409 128 KMG-ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRN-TLVA 205 (603)
Q Consensus 128 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 205 (603)
+.| +++.|+.+|++++..- |. |+++.+..+|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 4888888888887652 22 8999999999999875 6799999998888877764 4567
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHH----hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH---hcCCHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLC----KDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC---CVDDWKEA 278 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A 278 (603)
..+|+.++..-+. .+.+...|...+..+. ..|+++.+.++|++.... ++. .+..+-..|. .......+
T Consensus 68 ~~~fe~al~~vg~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFEN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccH
Confidence 7888888875321 2345677777777654 245678899999998874 221 1122222221 11112222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--C-----CHHHHHHH
Q 037409 279 KCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLV--G-----RISRAREL 351 (603)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~ 351 (603)
..++.+.. +.+..|..+++.+...-...+...|...+..-... + ..+.+..+
T Consensus 143 ~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 22222211 12333444444333210001233455544432221 1 13456788
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHhhCC-
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDAL-KLIDKMQLND- 429 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~- 429 (603)
|++++... +.+...|...+..+.+.|+.+.|..++++.... +.+...|.. |....+.++.. .+.+......
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhcc
Confidence 88888763 445677887888888899999999999999987 333333322 22211111211 1111110000
Q ss_pred ----C---CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-ChhHHHHHHHHHhhCCCC
Q 037409 430 ----V---VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-RLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 430 ----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~ 501 (603)
. ......|...+....+.++.+.|..+|+.+ +.. +.+...|...+..-...+ +.+.|..+|+...+..+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 0 011234556666666778899999999988 322 234455544333333334 699999999998886433
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
++..|...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566777777788899999999999872 3566777777776778999999888888763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-09 Score=92.81 Aligned_cols=188 Identities=10% Similarity=-0.031 Sum_probs=134.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HhHHH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPS--VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS--FTFAT 439 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 439 (603)
...+..+...+.+.|++++|+..|++++...+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34556677889999999999999999987533211 357788889999999999999999999875433211 24445
Q ss_pred HHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 440 YIDGLCK------------------NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 440 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
+..++.. .|++++|...|+++.+.. |.+........... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH------
Confidence 5555543 578999999999999764 44444433221110 001111
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE---VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
......++..+.+.|++++|+..|+++++.. |.+. ..+..++.++.+.|++++|.+.++.+...++.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 1122356778899999999999999999864 3333 56888999999999999999999999887665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-10 Score=95.15 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=107.3
Q ss_pred hhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC
Q 037409 53 DRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC-LCKMGI 131 (603)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 131 (603)
+......|++++|+..|++++..+|. +...|..+..++.+.|++++|+..|+++.... + ++......... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHHHhhcc
Confidence 33344568888888888888877665 67788888888888888888888888887664 3 55443333222 222233
Q ss_pred cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 037409 132 TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDP-NVVTFNTLINGLCRTRNTLVALKLFE 210 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 210 (603)
...|...++++++..+. +...+..+...+...|++++|+..|+++.+....+ +...+..+..++...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 44567777777776433 56677777777777788888888777777653111 24467777777777777777777777
Q ss_pred HHHH
Q 037409 211 EMVN 214 (603)
Q Consensus 211 ~~~~ 214 (603)
+.+.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=111.77 Aligned_cols=154 Identities=12% Similarity=-0.002 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|++++|+..|+++++.+|. +...|..++..+.+.|++++|...|+++++.. +.+...+..++.++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 37889999999999988765 78899999999999999999999999999886 66788999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHHh
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT---RNTLVALKLFEEMVNE 215 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 215 (603)
++++.+..+. +...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999998644 67899999999999999999999999998874 45677888999999999 9999999999999987
Q ss_pred c
Q 037409 216 F 216 (603)
Q Consensus 216 ~ 216 (603)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-09 Score=98.42 Aligned_cols=179 Identities=12% Similarity=-0.021 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLG 140 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 140 (603)
..+.....+...+ +.+...+..+...+.+.|++++|...|++++... |.+...+..++.++...|++++|...++
T Consensus 101 ~~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 101 PEEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444555442 3356677788888888899999999888888775 5677788888888888888888888888
Q ss_pred HHHHCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCc
Q 037409 141 RILRSCFTPNTV-TFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAI 219 (603)
Q Consensus 141 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 219 (603)
++....+ +.. ........+...++.++|+..+++..... +.+...+..+...+...|++++|+..|+++++..
T Consensus 176 ~~~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--- 249 (287)
T 3qou_A 176 TIPLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--- 249 (287)
T ss_dssp TSCGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred hCchhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---
Confidence 8877643 333 22223334566777788888888877764 4567778888888888888888888888888863
Q ss_pred cCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 220 CKPD--VVTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 220 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
+.+ ...+..++..+...|+.++|...|++..
T Consensus 250 -p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 250 -LTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -cccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 222 5677888888888888888888777654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.2e-09 Score=90.62 Aligned_cols=177 Identities=11% Similarity=-0.059 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CcchHHHH
Q 037409 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMG----ITSGAFVV 138 (603)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 138 (603)
.+|+..|+++.+. .++.++..+...|...+++++|+..|+++.+.| ++..+..+...|.. + ++++|..+
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577888888764 377888888888888999999999999988765 56777777777777 6 78888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh----cCChHHHHHHH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCA----EGRIMEAARLFKKLNVFACD-PNVVTFNTLINGLCR----TRNTLVALKLF 209 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 209 (603)
|++....+ +...+..|...|.. .+++++|+.+|++..+.|.. .+..++..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88887764 56777777777776 77888888888888776411 126677777777777 77888888888
Q ss_pred HHHHHhcCCccCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHhhCC
Q 037409 210 EEMVNEFGAICKPDVVTYNSIIDGLCKD-G-----FVDKAKELLLQMKDRN 254 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 254 (603)
++..+. +.+...+..+...|... | +.++|...|+...+.|
T Consensus 153 ~~A~~~-----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL-----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT-----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc-----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888764 23445666666666543 2 6778888887777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-09 Score=84.69 Aligned_cols=112 Identities=13% Similarity=0.004 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+...+..|.+.|++++|+..|++.++.++. +...|..++.++...|++++|+..++++++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 456677788888888888888888888887665 77788888888888888888888888888875 5667788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
+...|++++|.+.++++++..+. +......+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~--~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS--NEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC--CHHHHHHHHHh
Confidence 88888888888888888886654 66666666554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=93.52 Aligned_cols=101 Identities=12% Similarity=-0.015 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+...+..+...+.+.|++++|...|+++.+.+|. +...|..++.++...|++++|+..|+++++.. |.++..+..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 4567778888888889999999999988887666 78888888888889999999999999888875 556788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
+|...|++++|...++++++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 89999999999999998887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-09 Score=89.47 Aligned_cols=174 Identities=12% Similarity=-0.069 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHH
Q 037409 99 TVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEG----RIMEAARLF 174 (603)
Q Consensus 99 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 174 (603)
+|++.|+++.+.| ++..+..+...+...+++++|..+|++..+.+ +...+..|...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 55666666666666777777777777766654 45556666666655 4 666777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCC---ChhhHHHHHHHHHh----cCChhHH
Q 037409 175 KKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKP---DVVTYNSIIDGLCK----DGFVDKA 243 (603)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~a 243 (603)
++..+.| +..++..|...|.. .+++++|+++|++..+.+ + +...+..|...|.. .+++++|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-----ESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-----TSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-----CCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7665543 45556666666655 566666766666666542 2 14555566666665 5566666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCCV-D-----DWKEAKCLFIEMMDNG 289 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~ 289 (603)
...|++..+. +.+...+..|...|... | ++++|..+|+...+.|
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6666666554 12334555555555432 2 5666666666665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-09 Score=98.53 Aligned_cols=174 Identities=11% Similarity=0.036 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CC-CHhhHHHHHHHHHhcCCHH
Q 037409 342 VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERI----RP-SVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~ 416 (603)
.++++.|...|.++ ...|...|++++|...|.+...... .+ -..+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566665555543 3345566677777666666544210 00 1234555555666666666
Q ss_pred HHHHHHHHHhhCC---CCCC--HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHHhCCChh
Q 037409 417 DALKLIDKMQLND---VVPD--SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL-----RIETYNCLINGLCKMGRLK 486 (603)
Q Consensus 417 ~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 486 (603)
+|+..+++..... -.+. ..++..+...|.. |++++|+..|++..+..... ...++..+..+|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 6666666553210 0111 2344445555555 66666666665554321000 1244555555566666666
Q ss_pred HHHHHHHHHhhCCCC----CC-HhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 487 TACKLFHRLQHKGPI----PD-VVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+|...|++..+..+. +. ...+..++.++...|++++|+..|++.+
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666555542110 00 1134444445555566666666666555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=100.66 Aligned_cols=228 Identities=11% Similarity=-0.030 Sum_probs=164.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 037409 341 LVGRISRARELFVSMVSKGCRHDVYSYNILINANCK-DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDAL 419 (603)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 419 (603)
..|++++|.+++++..+... . .+.+ .++++.|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 35678889998888876521 1 1222 57888888888765 34677889999999
Q ss_pred HHHHHHhhC----CCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--ChHHHHHHHHHHHhCCChhHHH
Q 037409 420 KLIDKMQLN----DVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---EL--RIETYNCLINGLCKMGRLKTAC 489 (603)
Q Consensus 420 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~ 489 (603)
..+.+.... +..+ -..++..+...|...|++++|+..|++..+... .+ ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887542 1111 134777888899999999999999998875411 11 24678889999988 9999999
Q ss_pred HHHHHHhhCCCCC-C----HhHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037409 490 KLFHRLQHKGPIP-D----VVTCSTMIHWLCKEGQMDKANDLLLDMEAKN----CVPS-EVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 490 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~ 559 (603)
..+++.++..... + ..++..++.++...|++++|+..|+++++.. ..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988742211 1 4578889999999999999999999998742 1111 235677788888999999999
Q ss_pred HHHHHHHHCCCCCCCHH---HHHHHHHHHHcCCcHHHHHHH
Q 037409 560 VLLHKMAAEKLVVSDLS---LSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~ 597 (603)
..+++.+ ..+..++.. ....++..+ ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 655523332 233445544 57887777663
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-09 Score=86.99 Aligned_cols=125 Identities=10% Similarity=-0.005 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..++..+...|++++|...|++..+..+. +...+..++.++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344444444555555555555555443332 34444555555555555555555555555443 3344445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHHHHcCCcHHHHHHHHHh
Q 037409 552 NNKKSKVVVLLHKMAAEKLVVSDLSLS--SKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.|++++|...++++.+..+. +...+ ...+..+.+.|++++|++.+++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555544332 33333 2222224445555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=89.17 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 455 QVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
..++++.+.. +.+...+..+...+.+.|++++|...|+++...++. +...|..++.++...|++++|+..|+++++.+
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455665543 446678888999999999999999999999987666 88899999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 535 CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.+...+..++.+|...|++++|...++++++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567888999999999999999999999999986654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=87.12 Aligned_cols=103 Identities=13% Similarity=0.002 Sum_probs=74.8
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...|+++.+.. |.++..|..+..+|...|++++|...|+++.+.+|. +...|..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3455666667777777788877777777765 556777777777777777777887777777776555 56677777777
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
|...|++++|+..|+++++.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 777777777877777777753 5543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-07 Score=85.78 Aligned_cols=175 Identities=10% Similarity=0.035 Sum_probs=145.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-Ccch
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK-QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKM-G-ITSG 134 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 134 (603)
..+..++|+.+++.++..+|. +..+|+.-..++...| .+++++.+++.++... +-+..+|+....++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 345667899999999999887 8889999999998888 5999999999999886 66778888888777776 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHh--------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-----
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIM--------EAARLFKKLNVFACDPNVVTFNTLINGLCRTRN----- 201 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 201 (603)
++..+++++...++ |..+|+.-...+.+.|.++ ++++.++++.+.. +.|..+|+....++.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999999988655 7888888777777666666 8999999998875 5688899998888888776
Q ss_pred --hHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 202 --TLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 202 --~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
++++++.+++++.. .+.|...|+-+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCC
Confidence 68999999999987 467888888777777766654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-09 Score=87.50 Aligned_cols=111 Identities=14% Similarity=0.007 Sum_probs=88.5
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 421 LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
.++++.... +.+...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|...|+++...++
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445554432 1144566677788888999999999999888766 66888888899999999999999999999988766
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
. +...+..++.++...|++++|+..|+++++..
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5 67788888999999999999999999988753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-07 Score=87.55 Aligned_cols=161 Identities=10% Similarity=0.005 Sum_probs=86.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC-CCCh----HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----HhHHHHH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKC-ELRI----ETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VVTCSTM 510 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 510 (603)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...++++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666654321 1111 12223455555556666666666666653211 12 2246666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCCHHHHHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAK-----NCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVSDLSLSSK 580 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~ 580 (603)
+.+|...|++++|+.+++++++. +..+. ..++..++.+|.+.|++++|...++++++. +....-...+..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666666531 10111 224566666666666666666666666532 111012456666
Q ss_pred HHHHHHcCC-cHHHHHHHHHhh
Q 037409 581 VVDLLSKDK-KYRECLNQFRHL 601 (603)
Q Consensus 581 l~~~~~~~g-~~~eA~~~~~~~ 601 (603)
++.+|.+.| .+++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 666666666 346666666654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=88.72 Aligned_cols=127 Identities=11% Similarity=0.011 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..++..+...|++++|...|++.. .|+...|..++.++...|++++|+..++++++.. +.+...+..++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667778888888888887774 3467788888888888888888888888888765 556777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--------------CHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 551 QNNKKSKVVVLLHKMAAEKLVVS--------------DLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..|++++|...++++.+..+..+ ....+..++.+|.+.|++++|.+.+++.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888888888887554311 23778888888888888888888888764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.4e-08 Score=87.80 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=129.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-C-CHH
Q 037409 340 CLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ-KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV-G-NLG 416 (603)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 416 (603)
.+.+..++|+++++.++..+ +.+..+|+.-...+...+ .+++++..++.++...++ +..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 33444566777777777664 224455666666666666 477777777777765443 556666655555554 5 667
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC----
Q 037409 417 DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL--------EAVQVFQAIRNCKCELRIETYNCLINGLCKMGR---- 484 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 484 (603)
+++++++.+.+...+ +...|+.-...+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 777777777665433 5555555554444444444 6666666666655 4466666666666666654
Q ss_pred ---hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh--------------------hHHHHHHHHHHHCC-----CC
Q 037409 485 ---LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM--------------------DKANDLLLDMEAKN-----CV 536 (603)
Q Consensus 485 ---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~ 536 (603)
++++++.+++++...+. |...|+.+-..+.+.|+. .+..+...++.... ..
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 56666666666666555 666666666666655543 22222222222211 02
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 537 PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
++...+..++..|...|+.++|.++++.+.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 45556666666666666666666666665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-08 Score=86.53 Aligned_cols=126 Identities=13% Similarity=-0.096 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCK 481 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (603)
+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445555666677777777666553 3455666666666666677777777666666554 4456666666666666
Q ss_pred CCChhHHHHHHHHHhhCCCCCCH----------------hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 482 MGRLKTACKLFHRLQHKGPIPDV----------------VTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.|++++|...|+++.+..+. +. ..+..++.++...|++++|.+.++++++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66777776666666665333 22 45566666666666666666666666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-08 Score=79.16 Aligned_cols=111 Identities=11% Similarity=-0.068 Sum_probs=92.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+......+.+.|++++|++.|++.++.. |.+...|..+..+|.+.|++++|+..+++.++.++. +...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 456667788889999999999999988876 668888999999999999999999999999887666 788889999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...|++++|++.|+++++.. |.+...+..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 99999999999999999875 5566666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=90.65 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=121.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC---------------
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTIL-------LTMLAKNKQYDTVVSLFKRLNSNGLFPD--------------- 115 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 115 (603)
..++++.|+..|.++...+|. ....|..+ ..++.+.++..+++..+.+.+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 468999999999999999887 89999988 67888888888888888777652 111
Q ss_pred -------HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCc--H
Q 037409 116 -------LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPN--V 186 (603)
Q Consensus 116 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 186 (603)
..........+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...... +|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122333455666777777777777666654322 22 44455556667777777777776554321 111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP--DVVTYNSIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
..+..+..++.+.|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~---~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSP---AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTST---TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 355666667777777777777777766321 112 2234455566666777777777777776664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=81.08 Aligned_cols=121 Identities=9% Similarity=-0.085 Sum_probs=94.5
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+.+...+..++..+...|++++|...+++..+..+. +...+..++.++...|++++|+..++++++.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 345667778888888888888888888888876554 67778888888888888888888888888764 5567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
+.++...|++++|.+.++++.+..+. +...+..++.++.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcC
Confidence 88888888888888888888876554 56677777777776653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=96.24 Aligned_cols=129 Identities=7% Similarity=-0.059 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--------------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--------------VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
..+..+...|.+.|++++|...|++.++..+... ...|..++.++.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444444445555555555555555444332211 3455555666666666666666666665553
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH-HHHHHhh
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC-LNQFRHL 601 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA-~~~~~~~ 601 (603)
+.+...+..++.+|...|++++|...++++++..+. +...+..++.++.+.|++++| ...+++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666554443 555555566666666666655 3344444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-07 Score=86.10 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=105.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC---CC--HhH
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIRNCKCELR-----IETYNCLINGLCKMGRLKTACKLFHRLQHKGPI---PD--VVT 506 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~--~~~ 506 (603)
+...+..+...|++++|.+.+++..+...... ...+..++..+...|++++|...+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455566677777777777777665432111 122344555666777888888888777653211 11 346
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCCHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAK--NCVPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK----LVVSDLS 576 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 576 (603)
++.++..|...|++++|+..++++++. ..+.+ ..++..++.+|...|++++|...++++++.. .......
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777788888888888888888877621 01121 1467777888888888888888888776431 1101256
Q ss_pred HHHHHHHHHHcCCcHHHH-HHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYREC-LNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA-~~~~~~~ 601 (603)
++..++.+|.+.|++++| ..++++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 777788888888888888 6666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-08 Score=77.41 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+..++..+...|++++|...++++.+..+. +..++..++.++...|++++|+.+++++.+.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456666777777777777777777777765443 56667777777777777777777777777654 4566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 588 (603)
+...|++++|...++++.+..+. ++..+..++.++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhc
Confidence 77777777777777777765543 566666666665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-08 Score=79.21 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3456666777777777777777777777765443 56677777777777788888888777777764 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcH
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY 591 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (603)
++...|++++|...++++.+..+. +...+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD--NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHhcC
Confidence 788888888888888877776543 666777777777776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.3e-08 Score=80.98 Aligned_cols=129 Identities=7% Similarity=-0.123 Sum_probs=102.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...+++..+..+. +...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666777788888999988888888765 557888888888899999999999999988887554 677888888899
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTL--LRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~ 566 (603)
...|++++|...++++++.. +.+...+..+ +..+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999988875 4556666444 444778889999998888765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-09 Score=95.57 Aligned_cols=95 Identities=12% Similarity=-0.046 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 366 SYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
.+..+...+.+.|++++|+..|++++.... .+...|..+..+|...|++++|+..+++..+.... +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344444555555555555555555544322 13444555555555555555555555555443221 3444444555555
Q ss_pred hCCCHHHHHHHHHHHHH
Q 037409 446 KNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~ 462 (603)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=84.36 Aligned_cols=124 Identities=7% Similarity=-0.018 Sum_probs=90.7
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH-HHHcCCh--h
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW-LCKEGQM--D 521 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 521 (603)
...|++++|...+++..+.. +.+...+..++.+|...|++++|...|+++.+..+. +...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777777655 556777888888888888888888888888776554 66677777777 6677887 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 522 KANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+|+..++++++.+ +.+...+..++.++...|++++|...++++++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 8888888888764 456777778888888888888888888888876654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-09 Score=83.51 Aligned_cols=103 Identities=12% Similarity=-0.067 Sum_probs=91.0
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.+...+..+...+.+.|++++|...|+++...++. +...|..++.++...|++++|+..|+++++.+ +.+...+..++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 35567778888999999999999999999987766 78889999999999999999999999999976 66788889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.++...|++++|...++++++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999876654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.2e-09 Score=86.78 Aligned_cols=119 Identities=5% Similarity=0.051 Sum_probs=103.0
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG-FVQNNKK--S 556 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 556 (603)
...|++++|...+++..+..+. +...|..++.++...|++++|+..++++++.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4578899999999999987665 78899999999999999999999999999875 5678888999999 8899998 9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 557 KVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+|...++++++..+. +...+..++.+|...|++++|...+++.+
T Consensus 99 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 99 QTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999987765 78899999999999999999999999865
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-08 Score=88.09 Aligned_cols=161 Identities=11% Similarity=-0.086 Sum_probs=97.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhCCC
Q 037409 410 FQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC----KC-ELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 484 (603)
...|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356777777775444433 22234556667777777778888888777776641 11 1234566677777777777
Q ss_pred hhHHHHHHHHHhhC---CC-CC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcC
Q 037409 485 LKTACKLFHRLQHK---GP-IP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPS----EVTFCTLLRGFVQNN 553 (603)
Q Consensus 485 ~~~A~~~~~~~~~~---~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g 553 (603)
+++|...+++..+. .. .| ....+..++..+...|++++|...+++.++... ..+ ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777776653 11 11 133466677777777777777777777664310 112 223466677777777
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 037409 554 KKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~~ 571 (603)
++++|...++++.+....
T Consensus 162 ~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 777777777777764433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-08 Score=77.68 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+..++..+.+.|++++|...|++.++..+. +...|..++.++...|++++|+..++++++.+ +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666777777788888888888887776554 67777778888888888888888888887765 4567777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLV----VSDLSLSSKVVDL 584 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~ 584 (603)
+...|++++|...++++++..+. |.+..+...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 88888888888888887765510 1255555544443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.8e-08 Score=84.64 Aligned_cols=189 Identities=8% Similarity=-0.112 Sum_probs=137.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCcchHHHHHHHHHHCCCC-----------------
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLL-------INCLCKMGITSGAFVVLGRILRSCFT----------------- 148 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~----------------- 148 (603)
..++...|.+.|.++.... |.....|..+ ..++.+.++..+++..+.+.+...+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5899999999999999886 6677888877 56777777777777777666652110
Q ss_pred ---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC--
Q 037409 149 ---PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD-- 223 (603)
Q Consensus 149 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-- 223 (603)
.-...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccH
Confidence 01234455677788899999999999888765 354446666777888899999999999855432 1111
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN--VITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23567788888889999999999988875433243 345667777888888888898888888876
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-09 Score=83.18 Aligned_cols=99 Identities=12% Similarity=-0.039 Sum_probs=81.8
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++..+.++. +...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 4455666777888899999999998888766 667888888888999999999999999998887665 66778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCC
Q 037409 514 LCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~ 534 (603)
+...|++++|+..|+++++..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999998888753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4e-07 Score=83.77 Aligned_cols=163 Identities=10% Similarity=-0.012 Sum_probs=121.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHH----hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hHHHHH
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDV-VPDSF----TFATYIDGLCKNGFVLEAVQVFQAIRNCKCE-LR----IETYNC 474 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 474 (603)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788999999999988876422 22221 2334566667778999999999998874322 22 336899
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhC-----CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHH
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHK-----GPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVPS-EVTFC 543 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 543 (603)
++.+|...|++++|...++++.+. +..+ ...++..++.+|...|++++|+..++++++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999988841 1111 2347889999999999999999999988754 21222 67889
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNK-KSKVVVLLHKMAA 567 (603)
Q Consensus 544 ~l~~~~~~~g~-~~~a~~~~~~~~~ 567 (603)
.++.+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999999874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=91.04 Aligned_cols=123 Identities=12% Similarity=-0.070 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC---------------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD---------------VVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
..+..+...+...|++++|...|++..+..+... ...|..++.++...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444455555555566666655555555322211 2456666666667777777777777766653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 535 CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
+.+...+..++.+|...|++++|...++++++..+. +...+..++.++...|+.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN--NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777777776665443 5666666666666666666655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=74.47 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=89.5
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|...++++.+..+. +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4566677777888888888888888887654 556778888888888888888888888888876544 67778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 888888888888888888764 45666677776666544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-06 Score=78.60 Aligned_cols=237 Identities=9% Similarity=0.004 Sum_probs=145.0
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037409 340 CLVGRI-SRARELFVSMVSKGCRHDVYSYNILINANCKDQK----------VEDAVCLYREMLSERIRPSVITYNTLLSG 408 (603)
Q Consensus 340 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (603)
.+.|.+ ++|++.++.++..+ +.+..+|+.--..+...+. +++++..++.++...+. +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344544 47788888887764 2233445554444443333 56777777777765433 66677666666
Q ss_pred HHhcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC---
Q 037409 409 LFQVG--NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF-VLEAVQVFQAIRNCKCELRIETYNCLINGLCKM--- 482 (603)
Q Consensus 409 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 482 (603)
+...+ .+++++.+++.+.+..+. +...|+.-...+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 66666 377778888777766544 66666666666666676 477777777777765 55677777666666554
Q ss_pred -----------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCCCCCHH
Q 037409 483 -----------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE-----------GQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 483 -----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
+.++++++.+.+.+...|. |...|+.+-..+... +.++++++.++++++.. |.+.-
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w 273 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKW 273 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccch
Confidence 3466777777777776666 777777666655554 34667777777777754 22322
Q ss_pred HHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 541 TFCTLLR---GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 541 ~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
++..++. .....|..+++..++.++.+.+|. ...-|..+...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~--r~~~y~d~~~~ 318 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM--RAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc--hhhHHHHHHHH
Confidence 2222221 122356667777777777764432 55555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-08 Score=81.05 Aligned_cols=97 Identities=6% Similarity=-0.116 Sum_probs=50.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+...|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|++.++.++. +...|..++.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555555443 334455555555555555555555555555554333 444555555555
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 037409 515 CKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~ 533 (603)
...|++++|+..|+++++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-07 Score=75.29 Aligned_cols=119 Identities=12% Similarity=-0.045 Sum_probs=91.6
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++..+..+. +...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4456667777778888888888888877654 556777888888888888888888888888876544 57778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
+...|++++|...++++.+.. +.+...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888764 45677777777777777664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=72.24 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+..++..+...|++++|...+++..+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455666777777778888888888877776444 66677777777888888888888888877764 4567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
+...|++++|...++++.+..+. ++..+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHh
Confidence 88888888888888888765543 55555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.2e-08 Score=76.26 Aligned_cols=118 Identities=10% Similarity=-0.021 Sum_probs=84.2
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIH 512 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 512 (603)
+...+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44566667777777777777777777777654 446677777777777788888888888877776544 6677777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
++...|++++|++.++++.+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8888888888888888877754 334556666666666554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-06 Score=77.76 Aligned_cols=168 Identities=10% Similarity=-0.051 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 62 SNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQ----------YDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
.++|+..++.++..+|. +..+|+.-..++...+. +++++.+++.++... |-+..+|+.-.-++...|+
T Consensus 46 s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 46 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp SHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 45899999999999876 78889877776665554 678899999988875 6677888888888888884
Q ss_pred --cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---------
Q 037409 132 --TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR-IMEAARLFKKLNVFACDPNVVTFNTLINGLCRT--------- 199 (603)
Q Consensus 132 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 199 (603)
+++++..++++....+. |..+|+.-..++...|. ++++++.++++.+.. +.|..+|+....++...
T Consensus 124 ~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccc
Confidence 78999999999988655 78888888777888887 589999999988875 56788888877666654
Q ss_pred -----CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 200 -----RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 200 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.++++++.+++.+.. .|.|..+|+-+-..+.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~----~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHSS
T ss_pred cccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhc
Confidence 4477888888888887 466777776555444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-08 Score=76.13 Aligned_cols=97 Identities=6% Similarity=-0.049 Sum_probs=88.4
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
+...|..++..+...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..++++++..+. ++..+..++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 34568888999999999999999999999975 667899999999999999999999999999987765 889999999
Q ss_pred HHHHcCCcHHHHHHHHHhhc
Q 037409 583 DLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 583 ~~~~~~g~~~eA~~~~~~~l 602 (603)
.++...|++++|++.+++.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999998864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.8e-07 Score=82.71 Aligned_cols=166 Identities=8% Similarity=-0.052 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-----HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--hHH
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS-----FTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---ELR--IET 471 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~ 471 (603)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344555666777777777777766554322111 1233455566777888999888888775321 111 457
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhh---CCCC-C--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCC-CHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQH---KGPI-P--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN----CVP-SEV 540 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 540 (603)
++.++..|...|++++|...++++.+ ..+. + ...++..++.+|...|++++|+..++++++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88888999999999999999988873 2111 1 12578888999999999999999999887542 111 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKV-VVLLHKMAA 567 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 567 (603)
++..++.+|.+.|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788899999999999999 777887763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-07 Score=88.63 Aligned_cols=130 Identities=9% Similarity=-0.098 Sum_probs=99.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--------------hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR--------------IETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455556666666666666666666665442211 57888888899999999999999999888766
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV-VVLLHKMA 566 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 566 (603)
. +...|..++.+|...|++++|+..|+++++.. +.+..++..+..++...|++++| ...+++|.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 78888888999999999999999999988875 55777888888888888888888 45666665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-08 Score=89.27 Aligned_cols=97 Identities=11% Similarity=-0.117 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 037409 117 FVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGL 196 (603)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
..+..++..+...|++++|...++++++..+. +...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444444444444555555444444444222 44455555555555555555555555555442 23444555555555
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 037409 197 CRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~ 215 (603)
...|++++|+..|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5666666666666555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.6e-08 Score=76.02 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC----HHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPS----EVTF 542 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~ 542 (603)
...+..++..+.+.|++++|+..|+++++.+|. +...|..++.+|...|++++|++.++++++.+ ..++ ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667778888888888888888888876655 67777788888888888888888888777642 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
..++.++...|++++|++.+++.+ ... |+++....+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal--~~~-~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSL--SEF-RDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--HHS-CCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--hhC-cCHHHHHHH
Confidence 677777778888888888877765 333 666654443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-08 Score=83.29 Aligned_cols=157 Identities=14% Similarity=0.016 Sum_probs=96.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCc
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN----GL-FPDLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 132 (603)
..|++++|.+.++.... +|.....++..+...+...|++++|+..++++... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35888899885555443 34446778888888999999999999999887752 11 12234566666777777777
Q ss_pred chHHHHHHHHHHC---CC-C--CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC---CCCc--HHHHHHHHHHHHhcCC
Q 037409 133 SGAFVVLGRILRS---CF-T--PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA---CDPN--VVTFNTLINGLCRTRN 201 (603)
Q Consensus 133 ~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~ 201 (603)
++|...+++.... .. . .....+..+...+...|++++|...+++..... ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766553 11 1 123345666666667777777777766654320 0111 1234555566666666
Q ss_pred hHHHHHHHHHHHHh
Q 037409 202 TLVALKLFEEMVNE 215 (603)
Q Consensus 202 ~~~A~~~~~~~~~~ 215 (603)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=7.4e-08 Score=74.91 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..++..+.+.|++++|...|+++++..+. +...|..++.++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444555666666666666666666665444 55666666666666666666666666666654 3455566666666666
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 037409 552 NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~~~ 569 (603)
.|++++|...++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=75.51 Aligned_cols=101 Identities=12% Similarity=-0.024 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+.+...+..++..+...|++++|...|++..+..+. +...|..++.++...|++++|+..++++++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 345667777777777788888888888777776554 66777777777888888888888888877764 4567777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+.++...|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888877754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-07 Score=73.46 Aligned_cols=108 Identities=9% Similarity=-0.006 Sum_probs=84.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CC----HhHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PD----VVTCS 508 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 508 (603)
..+..+...+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|+..+++.++.++. ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456678888889999999999999988876 667888889999999999999999999988874322 11 23677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
.++.++...|++++|++.|++.++. .|++.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 7888888899999999999988874 4776665444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=78.17 Aligned_cols=119 Identities=10% Similarity=-0.045 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.+...+..+...+.+.|++++|+..|++.++..+. +...|..++.+|...|++++|+..++++++.. +.+...|..++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35678889999999999999999999999997666 78899999999999999999999999999986 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
.+|...|++++|...++++++..+..++......+..+..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999877663333344444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-07 Score=73.22 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD---VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFC 543 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 543 (603)
.+...+..+...+...|++++|...|++..+..+. + ...|..++.++...|++++|+..++++++.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34566777777777777777777777777775432 2 5667777777788888888888888877764 44667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
.++.++...|++++|...++++++..+. +...+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK--NKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHh
Confidence 7788888888888888888888776543 5555555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=86.12 Aligned_cols=130 Identities=12% Similarity=-0.043 Sum_probs=94.7
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----------------hHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR----------------IETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
..+..+...+...|++++|...|++..+.. +.+ ...+..+..+|.+.|++++|...+++.++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345556666677777777777777776643 222 278888899999999999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 037409 499 GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV-VLLHKMAA 567 (603)
Q Consensus 499 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 567 (603)
.+. +...+..++.++...|++++|+..|+++++.. +.+..++..+..++...|+.+++. ..++.+..
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 655 78888999999999999999999999998875 557778888888888877776666 45555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-07 Score=73.89 Aligned_cols=98 Identities=7% Similarity=0.001 Sum_probs=89.8
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
.+...|..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|...++++++..+. ++..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 367889999999999999999999999999875 567889999999999999999999999999987764 88999999
Q ss_pred HHHHHcCCcHHHHHHHHHhhc
Q 037409 582 VDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 582 ~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.+|...|++++|+..+++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999998864
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=71.26 Aligned_cols=102 Identities=11% Similarity=-0.025 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP--SEVTFCTL 545 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 545 (603)
+...+..++..+...|++++|...++++.+..+. +...|..++.++...|++++|+..++++++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4455666666777777777777777777665444 56666677777777777777777777777654 34 56667777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 037409 546 LRGFVQN-NKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 546 ~~~~~~~-g~~~~a~~~~~~~~~~~~~ 571 (603)
+.++... |++++|.+.++++.+..+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 7777777 7777777777777665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=7.3e-07 Score=68.81 Aligned_cols=112 Identities=11% Similarity=-0.083 Sum_probs=84.9
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...+++..+..+. +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3456667777778888888888888887755 556778888888888888888888888888876554 67778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
+...|++++|.+.++++.+.+ +.+...+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 888888888888888888764 4455555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-07 Score=72.55 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
+..++..+.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..++++++..+. +...+..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 3344455555555555555555555543 334555555555555555555555555555554443 4555555555555
Q ss_pred cCCcHHHHHHHHHhh
Q 037409 587 KDKKYRECLNQFRHL 601 (603)
Q Consensus 587 ~~g~~~eA~~~~~~~ 601 (603)
..|++++|++.+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.3e-07 Score=70.05 Aligned_cols=99 Identities=8% Similarity=-0.122 Sum_probs=87.6
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
+...|..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++++..+...+...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45678889999999999999999999999875 56788899999999999999999999999998654211788999999
Q ss_pred HHHHcC-CcHHHHHHHHHhhc
Q 037409 583 DLLSKD-KKYRECLNQFRHLL 602 (603)
Q Consensus 583 ~~~~~~-g~~~eA~~~~~~~l 602 (603)
.++.+. |++++|.+.+++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 999999 99999999999875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.5e-07 Score=88.99 Aligned_cols=123 Identities=9% Similarity=-0.029 Sum_probs=69.7
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---------------hHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---------------IETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
...+..+...+.+.|++++|...|+++.+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455566666677777777777777766543 222 355555666666666666666666666655
Q ss_pred CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 499 GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 499 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
.+. +...|..++.+|...|++++|+..|+++++.. +.+..++..+..++.+.|+++++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443 45555556666666666666666666665543 334445555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.7e-07 Score=72.11 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC--VPS----EVTFC 543 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 543 (603)
..+..++..+...|++++|...|++..+..+. +...+..++.++...|++++|+..++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555666666666666666666666665433 555666666666666777777776666665420 111 55566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
.++.++...|++++|.+.++++.+.. |++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 66667777777777777777766543 3444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=69.27 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCH---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDV---VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS---EVTFCTLL 546 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 546 (603)
..++..+...|++++|...|+++.+..+. +. ..+..++.++...|++++|+..++++++.. +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455666677777777777776664433 22 356666677777777777777777776653 333 55566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
.++...|++++|...++++++..+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC
Confidence 777777777777777777776544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=92.85 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=73.6
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
..+.+.|++++|...++++.+..+. +...|..++.++.+.|++++|++.++++++.. +.+...+..++.+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445566677777777766665444 56666677777777777777777777777654 445666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHH--HHcCCcHHHHHHHHH
Q 037409 557 KVVVLLHKMAAEKLVVSDLSLSSKVVDL--LSKDKKYRECLNQFR 599 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~eA~~~~~ 599 (603)
+|.+.++++++..+. +...+..++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777665544 44444445544 666677777776665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-07 Score=86.44 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=78.7
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
+...|..++.+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...++++++..+. +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 45678888999999999999999999999875 557888899999999999999999999999887654 788888899
Q ss_pred HHHHcCCcHHHHHHH
Q 037409 583 DLLSKDKKYRECLNQ 597 (603)
Q Consensus 583 ~~~~~~g~~~eA~~~ 597 (603)
.++.+.|+.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998988887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.5e-07 Score=74.94 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCH-HHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDL-SLSSKVV 582 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 582 (603)
...|..++.+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|...++++++..+. +. .+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA--AASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 4567777777778888888888888877764 556777777788888888888888888887776543 44 3444444
Q ss_pred HHHH
Q 037409 583 DLLS 586 (603)
Q Consensus 583 ~~~~ 586 (603)
.+..
T Consensus 140 ~~~~ 143 (162)
T 3rkv_A 140 IVTE 143 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-06 Score=68.72 Aligned_cols=114 Identities=15% Similarity=-0.075 Sum_probs=81.8
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCST 509 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 509 (603)
+...+..+...+...|++++|...|++..+.. +.+ ...+..+..+|...|++++|...+++..+..+. +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 45566667777777788888888887777643 222 567777888888888888888888888776544 6777778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
++.++...|++++|...++++++.. +.+...+..+....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8888888888888888888888764 44555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.8e-07 Score=70.10 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC---HHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE---VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD---LSLSSK 580 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 580 (603)
+..++..+...|++++|+..|+++++.. +.+. ..+..++.++...|++++|...++++++..+. + +..+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--CcccHHHHHH
Confidence 4557788899999999999999999864 3344 58889999999999999999999999987665 4 678899
Q ss_pred HHHHHHcCCcHHHHHHHHHhhc
Q 037409 581 VVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 581 l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++.+|.+.|++++|+..+++++
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=84.33 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC---CH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK--NC--VP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK--LVVS---DL 575 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~---~~ 575 (603)
++..++..+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++..... ...| ..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 3444555555555555555555544322 00 01 12234445555555555555555555544211 1101 01
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 576 SLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 576 ~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
..+..++..+...|++++|...+.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2344444445555555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.53 E-value=9.6e-07 Score=70.42 Aligned_cols=93 Identities=10% Similarity=-0.020 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVP-------SE-----VTFCTLLRGFVQNNKKSKVVVLLHKMAAE------ 568 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 568 (603)
+...+..+...|++++|+..|+++++.. +. +. ..|..++.++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444455555555555555555555542 11 12 26666777777777777777777777765
Q ss_pred -CCCCCCHHHH----HHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 569 -KLVVSDLSLS----SKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 569 -~~~~~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++. +...| ...+.+|...|+++||+..|++.+
T Consensus 93 ~~pd--~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQD--EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTST--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCc--hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 433 56666 777777777777777777777653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.3e-06 Score=83.87 Aligned_cols=174 Identities=10% Similarity=-0.069 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF----------VLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG 483 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 483 (603)
..++|++.++++...++. +...|+.-..++...|+ ++++++.++.+.+.. +.+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677888877765433 45556655555555555 889999999988876 668888888888888888
Q ss_pred --ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 037409 484 --RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG-QMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN-------- 552 (603)
Q Consensus 484 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 552 (603)
+++++...++++.+.++. |...|+.-..++...| .++++++.++++++.+ +.+..+|.....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999998877 8889999999988888 8899999999999876 66888888887777663
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHH
Q 037409 553 ------NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRE 593 (603)
Q Consensus 553 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 593 (603)
+.++++.+.+++++...+. +...|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~--~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN--DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS--CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHHHhcCCCccc
Confidence 5579999999999987765 88888889999988887544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=69.39 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=83.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CC----HhHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PD----VVTCS 508 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 508 (603)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455667777778888888888888877765 556777888888888888888888888887775332 12 66778
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
.++.++...|++++|.+.++++.+.. |+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 88888888888888988888888853 5666665555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-07 Score=74.89 Aligned_cols=95 Identities=7% Similarity=-0.035 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCCHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL----VVSDLS 576 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 576 (603)
++..++..+...|++++|...++++++... .++ ..++..++..+...|++++|...+++..+... .+....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444444455555555555444433200 001 22344444555555555555555555442210 001123
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.+..++.++...|++++|.+.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 444455555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=72.00 Aligned_cols=88 Identities=15% Similarity=0.022 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHHHhhCC---CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 482 MGRLKTACKLFHRLQHKG---PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
.|++++|+..|++.++.+ +. +...+..++.++...|++++|+..++++++.. +.+..++..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 466777777777777653 22 45566777777777777777777777777764 45566777777777777777777
Q ss_pred HHHHHHHHHCCCC
Q 037409 559 VVLLHKMAAEKLV 571 (603)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (603)
...++++++..+.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7777777765544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.7e-07 Score=72.88 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAK--------N---------CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
...+...+..+.+.|++++|+..|.++++. . .+.+..+|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344566666677777777777777776654 0 02234678899999999999999999999999
Q ss_pred HCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 567 AEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 567 ~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..+. ++..+..++.+|...|++++|+..|++.+
T Consensus 91 ~~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KREET--NEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCc--chHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 87664 89999999999999999999999998864
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-07 Score=85.10 Aligned_cols=146 Identities=10% Similarity=-0.025 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|..++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 445556666667777777777777776543 22210 111111222111110 02455566666
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HcCCcHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL-SKDKKYRE 593 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~e 593 (603)
.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...++++++..+. +...+..+..+. ...+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666653 345556666666666666666666666666554433 444455555442 23445555
Q ss_pred HHHHHHhhc
Q 037409 594 CLNQFRHLL 602 (603)
Q Consensus 594 A~~~~~~~l 602 (603)
+.++|++|+
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 566665553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=70.90 Aligned_cols=97 Identities=7% Similarity=-0.020 Sum_probs=69.7
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC------HH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD------LS 576 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~ 576 (603)
+...|..++..+...|++++|++.++++++.. +.+...+..++.++...|++++|+..++++++..+. + ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST--AEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS--TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ccHHHHHHH
Confidence 45566777777777888888888888877764 456777777788888888888888888887765543 3 55
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+..++.++...|++++|+..+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 66677777777777777766665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.2e-07 Score=87.15 Aligned_cols=118 Identities=8% Similarity=-0.049 Sum_probs=95.7
Q ss_pred hhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 037409 55 HKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSG 134 (603)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (603)
.....|++++|+..|+++++..|. +..+|..++.++.+.|++++|+..++++++.. +.+..++..++.++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344578999999999999998766 78899999999999999999999999999886 6678888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHhHHHHHHH
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLING--LCAEGRIMEAARLFK 175 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 175 (603)
|...++++.+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887543 44455555555 778899999999888
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-06 Score=80.37 Aligned_cols=92 Identities=10% Similarity=-0.068 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.+...|..+..+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++.. +.+...+..+.
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35678889999999999999999999999997665 78889999999999999999999999999875 55777888888
Q ss_pred HHHHhcCCHHHHHH
Q 037409 547 RGFVQNNKKSKVVV 560 (603)
Q Consensus 547 ~~~~~~g~~~~a~~ 560 (603)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-05 Score=76.94 Aligned_cols=197 Identities=8% Similarity=-0.063 Sum_probs=96.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q 037409 336 MDGFCLVGRISRARELFVSMVSKGCRHDV----------------YSYNILINANCKDQKVEDAVCLYREMLSERI-RPS 398 (603)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 398 (603)
...+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+..... .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566778888888888888776322111 0144555666666666666666665543210 011
Q ss_pred H----hhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HHhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC--
Q 037409 399 V----ITYNTLLSGLFQVGNLGDALKLIDKMQL----NDVVPD-SFTFATYIDGLCKNGFVLEAVQVFQAIRNC--KC-- 465 (603)
Q Consensus 399 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 465 (603)
. .+.+.+...+...|+++.+..+++.... .+..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1112222223344556666665555421 111111 234445555555566666666665554431 11
Q ss_pred -CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC---CCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 466 -ELRIETYNCLINGLCKMGRLKTACKLFHRLQHK---GPIPD---VVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 466 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
+.....+..++..|...|++++|..++++.... ...|. ...+..++..+...|++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111344555555566666666666665554431 11111 12334444445555555665555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-07 Score=69.58 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=65.7
Q ss_pred hCCCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHH
Q 037409 446 KNGFVLEAVQVFQAIRNCK--CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
..|++++|+..|+++.+.+ .+.+...+..++.+|...|++++|...|+++++.++. +...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3577788888888887653 2345677888888888888888888888888887665 677788888888888888888
Q ss_pred HHHHHHHHHCC
Q 037409 524 NDLLLDMEAKN 534 (603)
Q Consensus 524 ~~~~~~~~~~~ 534 (603)
+..++++++..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888888764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-06 Score=82.48 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=97.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------HHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD--------------SFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
....+..+...+.+.|++++|+..|++......... ...+..+..++.+.|++++|+..++++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677777788888888888888888876432211 467777888888888888888888888876
Q ss_pred CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHH-HHHHHHH
Q 037409 464 KCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAND-LLLDMEA 532 (603)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 532 (603)
. +.+...|..+..+|...|++++|...|+++++..+. +...+..+..++...++++++.+ .+++|..
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 557788888888888888888888888888887655 66777888888888887777654 4555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-06 Score=66.46 Aligned_cols=97 Identities=9% Similarity=-0.059 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC------C-----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC------
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIP------D-----VVTCSTMIHWLCKEGQMDKANDLLLDMEAK------ 533 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 533 (603)
.+...+..+.+.|++++|+..|++.++..+.. + ...|..++.++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666666643331 2 237888888888888888888888888875
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 534 -NCVPSEVTF----CTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 534 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+ +.+...| ...+.++...|++++|+..|+++++.
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3345677 88888999999999999999998864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=80.95 Aligned_cols=175 Identities=10% Similarity=-0.056 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQ----------YDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKM 129 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (603)
...++|++.+++++..+|. +..+|+.-..++.+.|+ +++++..++.+++.. +-+..+|..-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3457899999999999876 78899988888888887 999999999999876 66788999988889999
Q ss_pred C--CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-------
Q 037409 130 G--ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEG-RIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT------- 199 (603)
Q Consensus 130 g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 199 (603)
| ++++++..++++.+..+. |..+|+.-..++.+.| .++++++.++++.+.. +.|..+|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 669999999999998765 8889998888888889 8999999999998875 55788999888777663
Q ss_pred -------CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhH
Q 037409 200 -------RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK 242 (603)
Q Consensus 200 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (603)
+.++++++.+++++.. .|.|..+|.-+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCCccc
Confidence 4578999999999987 46678888888777777776444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=66.35 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 487 TACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
.|...|++..+..+. +...+..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455556666555443 55566666666666666666666666666653 3445566666666666666666666666665
Q ss_pred HC
Q 037409 567 AE 568 (603)
Q Consensus 567 ~~ 568 (603)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-06 Score=69.88 Aligned_cols=132 Identities=15% Similarity=0.071 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----Hh
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCE-LR----IETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VV 505 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~ 505 (603)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455566666677777777777665542100 11 246677777778888888888888776653111 11 34
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
.+..++.++...|++++|.+.+++.++. +.++ ...++..++..+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5677788888888888888888887653 1111 134567788888889999999998888775
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-06 Score=80.65 Aligned_cols=153 Identities=13% Similarity=-0.008 Sum_probs=89.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
....+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 3556777888889999999999999998764 233321 22334444443322 1247888999
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG-FVQNNKKS 556 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 556 (603)
+|.+.|++++|+..+++.++.++. +...|..++.+|...|++++|+..|+++++.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987665 78889999999999999999999999998864 3455566666665 34456778
Q ss_pred HHHHHHHHHHHCCCC
Q 037409 557 KVVVLLHKMAAEKLV 571 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~ 571 (603)
++...|+++....+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 888899998876544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=58.12 Aligned_cols=82 Identities=9% Similarity=0.064 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVD 583 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 583 (603)
...+..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 4456666666777777777777777776654 445666667777777777777777777777665543 5666666666
Q ss_pred HHHcC
Q 037409 584 LLSKD 588 (603)
Q Consensus 584 ~~~~~ 588 (603)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.8e-06 Score=62.40 Aligned_cols=79 Identities=10% Similarity=-0.023 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
++|+..++++++.. +.+...+..++.++...|++++|...++++++..+. +...+..++.+|...|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35788899998875 667889999999999999999999999999987664 788999999999999999999999988
Q ss_pred hc
Q 037409 601 LL 602 (603)
Q Consensus 601 ~l 602 (603)
.+
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0001 Score=58.45 Aligned_cols=110 Identities=10% Similarity=-0.038 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----cCChhHHH
Q 037409 449 FVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----EGQMDKAN 524 (603)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 524 (603)
++++|.+.|++..+.+ .+... +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5666677776666655 22222 5556666666666777777776652 55666666666666 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 525 DLLLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 569 (603)
++|++..+.| +...+..|+..|.. .+++++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777654 45666667777776 677777777777777654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-05 Score=75.54 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=89.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC-----CCC-CC-HhHH
Q 037409 442 DGLCKNGFVLEAVQVFQAIRNC-----K--CELRIETYNCLINGLCKMGRLKTACKLFHRLQHK-----GPI-PD-VVTC 507 (603)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~ 507 (603)
..+...|++++|+.++++.++. | .+....+++.|+.+|...|++++|+.++++.++. |+. |+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456788889998888877642 2 1112467788888888888888888888877652 332 22 3467
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 508 STMIHWLCKEGQMDKANDLLLDMEAK-----NCVPS---EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 508 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+.|+..|..+|++++|+.+++++++. | +.. ..+...+..++...|.+++|...|+++.+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887742 4 222 2334567777788888888888888887643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.3e-06 Score=64.87 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChh----------HHHHHHHHHhhCCCCCCHhHHHHHHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLK----------TACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 516 (603)
+.+++|.+.++...+.. |.+...|..+..++...++++ +|+..|++.++.++. +...|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 34455555555555444 444555555555555444332 444444444443333 33444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=9.6e-06 Score=60.25 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=31.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+...+..++.++...|++++|+..|+++++.+ +.+...|..++.+|...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555555555555555555443 33344455555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=60.69 Aligned_cols=93 Identities=18% Similarity=0.063 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS------EVT 541 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 541 (603)
+...+..+...+...|++++|...|++..+..+. +...|..++.++...|++++|++.++++++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 3455666777777777777777777777776554 56677777777777777777777777777653 223 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~ 562 (603)
+..++.++...|++++|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 566666666666655554433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.5e-05 Score=55.85 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+...+..+...+...|++++|...+++..+..+. +...+..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3456677777777888888888888877776544 56677778888888888888888888887764 445666777766
Q ss_pred HHHhcC
Q 037409 548 GFVQNN 553 (603)
Q Consensus 548 ~~~~~g 553 (603)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00011 Score=58.36 Aligned_cols=111 Identities=8% Similarity=-0.071 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchH
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGA 135 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 135 (603)
.++++|+.+|+++.+.+.. . +. +...|...+..++|+..|+++.+.| ++..+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3677888888888776532 2 23 6666766677788888888888765 56677777777776 6777788
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhcC
Q 037409 136 FVVLGRILRSCFTPNTVTFNFLINGLCA----EGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 181 (603)
..+|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887777764 56666777777776 677777777777777655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=63.29 Aligned_cols=89 Identities=7% Similarity=-0.008 Sum_probs=64.2
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM----------DKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
.+.+.+++|...+++..+.++. +...|..++.++...+++ ++|+..|+++++.+ +.+..+|..++.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3455677788888887777665 777777777777776654 47888888888765 45667777788887
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCC
Q 037409 550 VQNN-----------KKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 550 ~~~g-----------~~~~a~~~~~~~~~~~~ 570 (603)
...| ++++|++.|+++++.++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 7664 77888888888877553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.5e-05 Score=76.37 Aligned_cols=128 Identities=9% Similarity=-0.068 Sum_probs=92.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC---CCCC----CHHhHHHHHHHHHhCCCHHHHHHHHHHHHH-----cC--CCCChHH
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLN---DVVP----DSFTFATYIDGLCKNGFVLEAVQVFQAIRN-----CK--CELRIET 471 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~~ 471 (603)
+..+..+|++++|+.++++..+. -..| ...+++.+...|...|++++|..++++.++ .| .+....+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34566789999999998876432 1112 235677888889999999999999988764 22 1123467
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhh-----CCCC-CC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQH-----KGPI-PD-VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
++.|+..|...|++++|+.++++..+ .|+. |+ ..+.+.+..++...+.+++|+.++.++.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998765 2443 11 234566777788888899999999888765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.9e-05 Score=56.89 Aligned_cols=65 Identities=8% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.+...+..++.+|...|++++|+..++++++..+. ++..+..++.+|...|++++|++.+++.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457888999999999999999999999999998765 78899999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0001 Score=54.48 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEV-TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..+...|++++|+..++++++.. +.+.. .+..++.++...|++++|...++++++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444556666666666666666553 33445 5666666666666666666666666655443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0015 Score=59.94 Aligned_cols=144 Identities=7% Similarity=-0.046 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC-Cc----chHHHHHHHHH
Q 037409 77 PSPGMTSFTILLTMLA--KNK---QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK---MG-IT----SGAFVVLGRIL 143 (603)
Q Consensus 77 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~~----~~a~~~~~~~~ 143 (603)
++.+..+|...+++.. ..+ +..+|+.+|+++++.. |.....+..+.-++.. .+ .. ......++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4457777777666543 333 3578888999988875 4445566554444421 11 11 11112222221
Q ss_pred HC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 144 RS-CFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 144 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
.. ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|+++... .|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-----~P 341 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL-----RP 341 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CC
Confidence 11 124467788888777777899999999999999884 78888888888999999999999999999986 36
Q ss_pred ChhhHH
Q 037409 223 DVVTYN 228 (603)
Q Consensus 223 ~~~~~~ 228 (603)
...+|.
T Consensus 342 ~~~t~~ 347 (372)
T 3ly7_A 342 GANTLY 347 (372)
T ss_dssp SHHHHH
T ss_pred CcChHH
Confidence 666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00019 Score=68.97 Aligned_cols=87 Identities=10% Similarity=-0.081 Sum_probs=64.5
Q ss_pred hCCChhHHHHHHHHHhhC-----CCC-CC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHK-----GPI-PD-VVTCSTMIHWLCKEGQMDKANDLLLDMEAK-----N-CVPS-EVTFCTLL 546 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~ 546 (603)
..|++++|+.++++.++. |+. |+ ..+++.++.+|...|++++|+.+++++++. | -.|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567889999998887652 222 11 356788888899999999999998888743 3 0122 34578888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037409 547 RGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~ 567 (603)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999999888885
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00013 Score=53.78 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCCHh-HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPDVV-TCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
.+..+.+.|++++|...++++.+..+. +.. .|..++.++...|++++|+..|+++++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566677777777777777765444 555 67777777777777777777777777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0025 Score=58.59 Aligned_cols=143 Identities=10% Similarity=-0.036 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHH--HhcCC---cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cC--C---HhHHHHHHHHHHh
Q 037409 113 FPDLFVLNLLINCL--CKMGI---TSGAFVVLGRILRSCFTPNTVTFNFLINGLCA---EG--R---IMEAARLFKKLNV 179 (603)
Q Consensus 113 ~~~~~~~~~l~~~~--~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~---~~~A~~~~~~~~~ 179 (603)
+.+..+|...+++. ...++ ..+|+.+|+++++..+. ....|..+..+|.. .+ . .......++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 55667777766543 33333 47899999999998554 44555544444431 11 1 1111122222211
Q ss_pred c-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 037409 180 F-ACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN 258 (603)
Q Consensus 180 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 258 (603)
. ..+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++.... .|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 1 125577788887777777899999999999999963 67778888899999999999999999999886 455
Q ss_pred hhhHH
Q 037409 259 VITYN 263 (603)
Q Consensus 259 ~~~~~ 263 (603)
..+|.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 55554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0032 Score=45.30 Aligned_cols=67 Identities=7% Similarity=-0.053 Sum_probs=41.6
Q ss_pred CHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 503 DVVTCSTMIHWLCKEGQ---MDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
|...+..++.++...++ .++|..+++++++.+ +.+......++..+.+.|++++|+..|+++++..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55556666666554433 466666666666654 44566666666666667777777777766665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00087 Score=48.35 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.++..+..++.++...++ .++|..+++++++..+. ++.....++..+.+.|++++|+..|++++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5688889999998865555 69999999999998775 89999999999999999999999999986
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00079 Score=64.73 Aligned_cols=97 Identities=7% Similarity=-0.094 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCC---CCCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCC
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKG---PIPD----VVTCSTMIHWLCKEGQMDKANDLLLDMEAK-----N-CVP 537 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~ 537 (603)
.....+..+.+.|++++|+.++++.++.. ..|+ ..+++.++.+|...|++++|+.+++++++. | ..|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 33344555667889999999998887631 1122 456788888899999999999999888743 2 011
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 538 S-EVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 538 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+ ..++..|+..|...|++++|..+++++++
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1 34578888899999999999999999885
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00076 Score=52.96 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 037409 484 RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 484 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 558 (603)
.+..+++-|.+..+.++ ++..+...+.+++.+.+ +.++++.++++..+.+ .| +...+..|+-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45677888888877766 58888899999999988 6679999999999875 34 467788899999999999999
Q ss_pred HHHHHHHHHCCCC
Q 037409 559 VVLLHKMAAEKLV 571 (603)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (603)
.++++.+++..|.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999987664
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0023 Score=50.29 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC---ChhHHHHHHHHHhhCC-CCCCHhHHHHHHHHHHHcCChhHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG---RLKTACKLFHRLQHKG-PIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
+....+.+.|.+..+.+ +++..+...+..++++.+ +++++..+|+...+.+ +.-+...+-.+.-++.+.|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34567777777777766 578899999999999988 6779999999999865 211456677788889999999999
Q ss_pred HHHHHHHHHCC
Q 037409 524 NDLLLDMEAKN 534 (603)
Q Consensus 524 ~~~~~~~~~~~ 534 (603)
.++++.+++..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999964
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.1 Score=45.89 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc-
Q 037409 167 IMEAARLFKKLNVFACDPN---VVTFNTLINGLCRT-----RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD- 237 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 237 (603)
...|...+++..+. +|+ -..|..+...|... |+.++|.+.|++.++.+ ...+..++....+.++..
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhc
Confidence 35666666776665 455 45677777777773 77777777777777753 111366666677777664
Q ss_pred CChhHHHHHHHHHhhCCCC
Q 037409 238 GFVDKAKELLLQMKDRNIN 256 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~ 256 (603)
|+.+++.+.+++.......
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7777777777777776443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0038 Score=59.98 Aligned_cols=98 Identities=15% Similarity=0.053 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhC-----CCC-C
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCK---CEL----RIETYNCLINGLCKMGRLKTACKLFHRLQHK-----GPI-P 502 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p 502 (603)
.....+..+.+.|++++|+.++++.++.. ..+ ...+++.++.+|...|++++|+.+++++++. |+. |
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 33444566778899999999999988531 122 2467899999999999999999999988752 322 2
Q ss_pred C-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 503 D-VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 503 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+ ..+++.|+..|..+|++++|+.+++++++.
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2 446889999999999999999999999886
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0036 Score=60.06 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 261 TYNSLICGFCCVDDWKEAKCLFIEMMDN-----G-VQPD-VVTFNAMINYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 261 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (603)
+++.|...|...|++++|+.++++.+.. | -.|+ ..+++.|...|...|++++|..++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3444444444444444444444444321 1 0111 2344555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.068 Score=40.24 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=65.5
Q ss_pred hCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
.+|++......+-.+-. +....+..+..+..+|+-++-.+++..++... +|++..+..++.+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHH
Confidence 34555555555544432 34456777788889999999999999876543 7899999999999999999999999
Q ss_pred HHHHHHHCCCC
Q 037409 561 LLHKMAAEKLV 571 (603)
Q Consensus 561 ~~~~~~~~~~~ 571 (603)
+++++.+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99999998875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0037 Score=46.32 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=55.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN------CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLS 576 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (603)
+..-+..++..+...|+++.|+..++++++.. -.+...++..|+.++.+.|++++|...++++. ...|.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHH
Confidence 44556678888889999999999988887641 12356678888889999999999999888886 56644444
Q ss_pred HHHH
Q 037409 577 LSSK 580 (603)
Q Consensus 577 ~~~~ 580 (603)
+...
T Consensus 82 ~~~n 85 (104)
T 2v5f_A 82 ANGN 85 (104)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.89 E-value=6.3e-07 Score=83.26 Aligned_cols=265 Identities=11% Similarity=0.078 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 037409 115 DLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLIN 194 (603)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+..|+.|+++....+...+|+..|= + ..|+..|..++....+.|.+++-++.+.-..+. ..+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 34566677777777776666655431 1 125556666777777777777777766555443 233344456666
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
+|++.++..+-.+. + ..||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|+
T Consensus 125 ayAk~~rL~elEef----l------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~ 185 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----I------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGE 185 (624)
T ss_dssp HHHTSCSSSTTTST----T------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSG
T ss_pred HHHhhCcHHHHHHH----H------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHH
Confidence 77777665442221 1 235555556667777777777776666644332 3344555566676
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
+..|.+.-++ ..++.||..+-.+|...+++.-|...--.++-. +| -...++..|...|-+++-+.+++.
T Consensus 186 yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6666543322 236778888888899888887776654444422 11 223456668888888888888888
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC------CHhhHHHHHHHHHhcCCHHHHH
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE-RIRP------SVITYNTLLSGLFQVGNLGDAL 419 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 419 (603)
.+... ......|+-|.-.|++- ++++..+.++..-.+ +++. ....|..++-.|.+-.+++.|.
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 76432 33556677777777765 455555544433222 1111 1234555555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.014 Score=43.04 Aligned_cols=76 Identities=13% Similarity=-0.028 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC------CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG------PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
..+...+..++..+.+.|+++.|...|+.+.+.. ..+...++..++.++.+.|++++|+.+++++++.. |.+.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~ 80 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQ 80 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCH
Confidence 3456677889999999999999999999887641 12357788999999999999999999999999864 3344
Q ss_pred HHH
Q 037409 540 VTF 542 (603)
Q Consensus 540 ~~~ 542 (603)
.+.
T Consensus 81 ~~~ 83 (104)
T 2v5f_A 81 RAN 83 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.016 Score=43.71 Aligned_cols=87 Identities=15% Similarity=0.040 Sum_probs=59.0
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK---ANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 557 (603)
..+..+.+-+.+....|. |+..+--.+.+++.+..+... ++.+++...+.+ .| .......|+-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555556665555444 466677777778877776655 777888777654 23 34556677778888888888
Q ss_pred HHHHHHHHHHCCCC
Q 037409 558 VVVLLHKMAAEKLV 571 (603)
Q Consensus 558 a~~~~~~~~~~~~~ 571 (603)
|.+.++.+++..|.
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888876554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.63 E-value=2.3e-05 Score=73.16 Aligned_cols=206 Identities=11% Similarity=0.010 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
+.+|..++.+..+.++..+|++.|-++ -|+..|..++....+.|.+++-...+..+.+..- +..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456888888888888888877655332 2555677788888888888888888776665533 34445677888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC-----------------CccCCC
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG-----------------AICKPD 223 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~~~~~ 223 (603)
|++.++..+-.+. .. .||..-...+..-|...|.++.|.-+|..+..-.. ..-..+
T Consensus 126 yAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888875543322 11 45666666667777777777776666544322100 001235
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINY 303 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (603)
+.+|..+..+|...+.+.-|.-.--.+.-. +.-...++..|-..|.+++-+.+++.-+... ......|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 566776777777777666554433333221 1112234445666677777666666655332 3455566666666
Q ss_pred HHhc
Q 037409 304 NCKD 307 (603)
Q Consensus 304 ~~~~ 307 (603)
|++-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.032 Score=59.31 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=87.1
Q ss_pred HHHhcCChHHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 373 ANCKDQKVEDAVC-LYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 373 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
.....+++++|.+ ++..+ ++......++..+.+.|.++.|+++.+ +... -.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~~---~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQDQ---KFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHHH---HHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccch---heehhhhcCCHH
Confidence 3445667777655 43211 112223666666677777777766542 1111 122334567777
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+|.++.+. -.+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++.+.+.
T Consensus 670 ~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77776433 23566777777777777777777777777653 3344445555666666666655555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 532 AKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 532 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
..| + +.....+|.+.|++++|++++.++
T Consensus 735 ~~~---~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTG---K---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTT---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcC---c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 543 1 122233455667777776666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.029 Score=49.36 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 037409 485 LKTACKLFHRLQHKGPIP-DVVTCSTMIHWLCK-----EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN-NKKSK 557 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 557 (603)
...|..++++.++.++.- +...|..++..|.+ -|+.++|.++|+++++.+..-+..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345666666666643221 24456666666666 367777777777777654111355666666666663 67777
Q ss_pred HHHHHHHHHHCCCC
Q 037409 558 VVVLLHKMAAEKLV 571 (603)
Q Consensus 558 a~~~~~~~~~~~~~ 571 (603)
+.+.+++.+...+.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 77777777765544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.56 E-value=0.94 Score=47.35 Aligned_cols=263 Identities=11% Similarity=-0.064 Sum_probs=126.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHhhHHH--HHH
Q 037409 269 FCCVDDWKEAKCLFIEMMDNGVQPDV--VTFNAMINYNCKDGKMDKVNRLLELMIQRGV-------NPDTVTYNS--LMD 337 (603)
Q Consensus 269 ~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~--l~~ 337 (603)
....|+.++++.++...+..+...+. ..-..+.-+....|..+++..++...+...- .+....-.. |..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34556666666666554432101122 2222333344555555567776666554321 001111122 222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH--HHHHHhcC
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYN--ILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL--LSGLFQVG 413 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~ 413 (603)
++.-.++ +++.+.+..++...- ....... .+...+.-.|+.+....++..+.+.. +......+ .-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 2333344 345555555554321 0011111 22333445677777777777666531 22222223 33344678
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTF--ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
+.+.+..+++.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888777777653 12222211 123345667778776666777776532 22333333333344446777777777
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHH
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQM-DKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 77666542 33333333344444444443 577778888864 3454443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.01 Score=44.77 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=66.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCC-CCCCCHHHHHHHHHHHHcCCcHH
Q 037409 517 EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK---VVVLLHKMAAEK-LVVSDLSLSSKVVDLLSKDKKYR 592 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 592 (603)
......+.+.+.+....| .++..+-..+++++.++.+... ++.+++...+.+ +. ...+....++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHH
Confidence 334456666777776666 5889999999999999998766 889999988754 21 25677888899999999999
Q ss_pred HHHHHHHhhc
Q 037409 593 ECLNQFRHLL 602 (603)
Q Consensus 593 eA~~~~~~~l 602 (603)
+|+++++.+|
T Consensus 92 ~A~~~~~~lL 101 (126)
T 1nzn_A 92 KALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.089 Score=55.82 Aligned_cols=193 Identities=16% Similarity=0.115 Sum_probs=120.0
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 337 DGFCLVGRISRARE-LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 337 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.++.. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 44456788998876 442211 02233777888889999999987663211 112345678999
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
+.|.++.+.+ .+...|..+.+.+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999986544 3678999999999999999999999987642 334555555667766655555544
Q ss_pred hhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 037409 496 QHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS-- 573 (603)
Q Consensus 496 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 573 (603)
...| -++....++.+.|++++|++++ .+.+++++|..+-++ .++. .
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~----------------------~~~~~~~~A~~lA~~---~~~~-~~~ 781 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL----------------------IKSQRFSEAAFLGST---YGLG-DNE 781 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH----------------------HHTTCHHHHHHHHHH---TTCC-HHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH----------------------HHcCChHHHHHHHHH---hCCC-hHH
Confidence 4432 1233334455556666655554 455667777665554 2222 1
Q ss_pred CHHHHHHHHHHHHcCCcHHHH
Q 037409 574 DLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~eA 594 (603)
-+.+.......+...|+.+.|
T Consensus 782 i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 782 VNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHhccchhHH
Confidence 124555555666677765433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.082 Score=42.65 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=78.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChh
Q 037409 442 DGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMD 521 (603)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 521 (603)
......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3446789999999987765 3788999999999999999999999998863 455566677788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 522 KANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
.-..+-+.....| + ++.....+...|+++++.+++.+.
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 8777777666655 1 233445577889999999888553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.073 Score=41.15 Aligned_cols=54 Identities=17% Similarity=0.043 Sum_probs=32.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 517 EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.++.++|.++|+.+++.+-.- ...|...+.--.+.|+...|.+++.+.+..++.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 356666666666665543222 555555555556667777777777776665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.17 Score=40.81 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=95.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456789999999998765 3788999999999999999999999988653 34555667778998
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
+.-.++-+.....| -++....++...|++++++++|.+.-. -|.... .....|..+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 88777766665542 256666778889999999999865432 121111 122357778888887765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.091 Score=40.61 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH----HHHHH-H--HHHHhcCCcchHHHHHHHHHH
Q 037409 78 SPGMTSFTILLTMLAKNKQY------DTVVSLFKRLNSNGLFPDLF----VLNLL-I--NCLCKMGITSGAFVVLGRILR 144 (603)
Q Consensus 78 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~----~~~~l-~--~~~~~~g~~~~a~~~~~~~~~ 144 (603)
+.|.++|-..+..+-+.|++ ++.+++|+++... +||+.. .|..+ + ..+...++.++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34889999999999988999 8999999998875 355421 11111 1 122334677777777777665
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 037409 145 SCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 181 (603)
. .+.-..+|......-.++|+...|.+++.+....+
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 4 22235566666666667777777777777766654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=44.91 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 573 SDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.+.-..++.+|.+.|++++|+.+++.++
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345777889999999999999999999886
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.062 Score=54.90 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
|...|+++-|+++.+++...- |.+-.+|..|+.+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334555555555555555542 334555555555555555555555554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.64 Score=35.16 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=22.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 267 CGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (603)
+.....|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333444444444444443221 13334444444444444444444444444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.58 Score=35.90 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=48.8
Q ss_pred CCCHhHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 501 IPDVVTCSTMIHWLCKEGQM---DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.|+..+--.+.+++.+..+. .+++.+++.+...+..........|+-++.+.|++++|.++.+.+++..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 46666767777777776644 467777777776541123455667777788888888888888888876554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.22 Score=37.62 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=52.2
Q ss_pred CCCCCHhHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 499 GPIPDVVTCSTMIHWLCKEGQM---DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 499 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..|+..+--.+++++.+..+. .+++.+++++.+.+..-....+..|+-++.+.|++++|.++.+.+++..|.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4456777777778888877644 467788888777651123556777888888888888888888888875554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.43 Score=36.62 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNKK---SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.|+..+-..+++++.++.+. .+++.+++.+.+.++. ...+....++-++.+.|++++|+++.+.+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 68888989999999998866 5788899999886654 467788889999999999999999999876
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.75 E-value=4.9 Score=42.18 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhh
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
-|..++.+..+.++.+.+.++|..+.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677888888888888888888764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.22 Score=37.70 Aligned_cols=67 Identities=10% Similarity=-0.032 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 535 CVPSEVTFCTLLRGFVQNNKK---SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
-.|+..+-..+++++.++.+. .+++.+++.+.+.++. -..+....++-++.+.|++++|+++.+.+|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~-~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 368889989999999998866 5788999999876653 357888889999999999999999999876
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.12 E-value=4.3 Score=38.98 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 308 GKMDKVNRLLELMIQR-----GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 308 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
|+++.|.+.+-.+.+. +..........++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5666776666555432 2233445566677777777777776666655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.43 Score=48.83 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHhc------CCCC-cH--
Q 037409 118 VLNLLINCLCKMGI-TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEG-RIMEAARLFKKLNVF------ACDP-NV-- 186 (603)
Q Consensus 118 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~~-~~-- 186 (603)
....+++.+...|+ ++.|..+++++.+..+..+......++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34445555555665 4778888888887743322222233333333332 223455555544321 1111 11
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 187 --------VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 187 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
.....-...+...|+++-|+++.++.... .|.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222235566788999999999998886 45667889999999999999999998888875
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.37 E-value=5.5 Score=38.27 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--hh
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDN--GVQPD---VVTFNAMINYNCKDGKMDKVNRLLELMIQ----RGVNPDT--VT 331 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~ 331 (603)
..|...|...|++.+|.+++..+... |.... ...+...+..|...+++..|..+++++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666677777777777777776532 11111 23455566677777777777777776532 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
+...+..+...+++.+|-+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555566667777777666666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.73 Score=43.49 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA-----AEKLVVSDLSLSSKV 581 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~~l 581 (603)
...++..+...|++++++..+..+.... +-+...+..++.++.+.|+..+|.+.|+++. +.|+. |.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~-P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID-PGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC-CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHH
Confidence 3445555666666666666666666554 4566666666666666666666666666654 23666 565554443
Q ss_pred HHHH
Q 037409 582 VDLL 585 (603)
Q Consensus 582 ~~~~ 585 (603)
-.++
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.24 E-value=7.4 Score=36.36 Aligned_cols=245 Identities=11% Similarity=-0.010 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CcchHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhH--
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSK-GCRH---DVYSYNILINANCKDQ-KVEDAVCLYREMLSERIRPSVITY-- 402 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~-- 402 (603)
.....+...|.+.|+.++..+++.....- +.-+ .......++..+.... ..+.-.++..+..+.... ...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45678888999999999988888776432 1011 2234566777776643 334444444444331000 11223
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCC---HHhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChHH
Q 037409 403 ----NTLLSGLFQVGNLGDALKLIDKMQLN--DVVPD---SFTFATYIDGLCKNGFVLEAVQVFQAIRNC--KCELRIET 471 (603)
Q Consensus 403 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 471 (603)
..++..|...|++.+|.+++..+.+. ..... ...+..-++.|...+++.++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25677888899999998888887642 11111 233445566777888999998888877642 22233332
Q ss_pred H----HHHHHHHH-hCCChhHHHHHHHHHhhCCCCCCHh----HHHHHHHHHHHcCChhHHHHHHH-HHHHCCCCCCHHH
Q 037409 472 Y----NCLINGLC-KMGRLKTACKLFHRLQHKGPIPDVV----TCSTMIHWLCKEGQMDKANDLLL-DMEAKNCVPSEVT 541 (603)
Q Consensus 472 ~----~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~ 541 (603)
. ..-+..+. ..+++..|...|-+..+.-...... ..-.++-+-.-.++..+...++. +....-..|+...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHH
Confidence 2 22334455 6888888888877664320011111 11112222223344333333332 2211112344444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLS 578 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 578 (603)
+..++.++ ..+++.+...+++.... .+. .|+...
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~-~D~~l~ 292 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK-ELA-EDVIVQ 292 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT-TTT-TSHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH-HHh-cChHHH
Confidence 55555554 66777776666665432 233 455443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.92 Score=35.94 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 037409 157 LINGLCAEGRIMEAARLFKKL 177 (603)
Q Consensus 157 l~~~~~~~g~~~~A~~~~~~~ 177 (603)
+...|...+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 444445555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=1.2 Score=41.97 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA-----KNCVPSEVTFCTL 545 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 545 (603)
...++..+...|+++++...+..+....+- +...|..++.++...|+..+|++.|+++.+ .|+.|++.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 445566677778888888777777776554 677778888888888888888877777653 3777776664433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.76 E-value=8.6 Score=42.29 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C--------------
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN----D-------------- 429 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------- 429 (603)
..++..+.+.+.++.+.++..-. . .+...--.+..++...|++++|...|++.-.. .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-N----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-C----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-c----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555566667766665544322 1 23333344556677788888888888764210 0
Q ss_pred ----CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 430 ----VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI----ETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 430 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
...-..-|..++..+.+.+.++.+.++-+...+...+.+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 0011233667777888889999998888777654322222 3678889999999999999999988876433
Q ss_pred CCHhHHHHHHHHHHHcCChhH------------HHHHHHH-HHHC-CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDK------------ANDLLLD-MEAK-NCVPSEVTFCTLLRGFVQNNKKSKV-VVLLHKMA 566 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~------------A~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 566 (603)
-...+..++..++..|..+. ..+++.. +... .+...+.-|..|-.-+...|++..| .-+|+.+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 35567777777776655544 3444432 2111 1111223455555556667777554 44555554
Q ss_pred H
Q 037409 567 A 567 (603)
Q Consensus 567 ~ 567 (603)
+
T Consensus 1049 R 1049 (1139)
T 4fhn_B 1049 R 1049 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.60 E-value=5.7 Score=43.70 Aligned_cols=190 Identities=13% Similarity=0.068 Sum_probs=94.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC--------------------
Q 037409 87 LLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSC-------------------- 146 (603)
Q Consensus 87 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------- 146 (603)
++..+...+.++.+..+.... +.++.....++.++...|++++|.+.|++....-
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444555555555554433222 2233333445556666666666666665432110
Q ss_pred --CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCcc
Q 037409 147 --FTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV----VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAIC 220 (603)
Q Consensus 147 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 220 (603)
...-..-|..++..+-+.|.++.+.+.-....+...+.+. ..|..+...+...|++++|...+-.+....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---- 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---- 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH----
Confidence 0001123556666676777777776666554443211111 146666777777777777776666655432
Q ss_pred CCChhhHHHHHHHHHh------------cCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 037409 221 KPDVVTYNSIIDGLCK------------DGFVDKAKELLLQMKDRN--INPNVITYNSLICGFCCVDDWKEAKC-LFIEM 285 (603)
Q Consensus 221 ~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~ 285 (603)
.-......++..++. .|..++..+++....+.. ....+.-|..|=..+...|++.+|-. +|+.+
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 222333333333222 466677777665433211 11122334555555666777765544 44444
Q ss_pred H
Q 037409 286 M 286 (603)
Q Consensus 286 ~ 286 (603)
.
T Consensus 1048 ~ 1048 (1139)
T 4fhn_B 1048 S 1048 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.14 E-value=10 Score=34.05 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=19.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 328 DTVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
++.....+...|.+.+++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56667777777888888888777664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.98 E-value=15 Score=33.04 Aligned_cols=81 Identities=7% Similarity=-0.097 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc---CChhHHHHHHHHHHHCCCCCCHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE---GQMDKANDLLLDMEAKNCVPSEVTFC 543 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 543 (603)
-++.....+...|.+.|++.+|+..|-.-. .-+...+..++.-+... |...++--++-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------- 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------- 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------
Confidence 377888888999999999988888765211 11344555555544443 33333222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
..+--|.-.|+...|..+++...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 12223556788888888877665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.81 E-value=5.8 Score=28.21 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+.-+..+-++.+...+..|++......+.+|.+.+++..|.++++.++..- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344555666666666677777777777777777777777777777665421 222344554443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=32 Score=34.55 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHH----HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNT----LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
.+.+.|...+........ .+...... +.......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 477899999988765322 23332222 2222333443556666666654432 2333334444445577999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
...|+.+.... .....-.-.+.+++...|+.++|..+|..+.+
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988775422 22455566778888889999999999998875
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.73 E-value=4.8 Score=34.89 Aligned_cols=116 Identities=19% Similarity=0.264 Sum_probs=76.9
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
....+.|++++|+.....-++..|. |...-..++..+|-.|+|+.|.+-++...+.. |+...-..+.+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHH------
Confidence 3456789999999999999998777 88888899999999999999999999998864 55333222211111
Q ss_pred HHHHHHHHHHHCCCC----CCCHHHHHHHHHHHH--cCCcHHHHHHHHHhh
Q 037409 557 KVVVLLHKMAAEKLV----VSDLSLSSKVVDLLS--KDKKYRECLNQFRHL 601 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~--~~g~~~eA~~~~~~~ 601 (603)
.|...-++...-+-. .........++.++. ..|+.++|.+.-++.
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 222222333322111 023445556666655 469999998876654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=37 Score=34.04 Aligned_cols=403 Identities=9% Similarity=-0.002 Sum_probs=189.3
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
.|..+.-....|+.+.+..+-..+ ..+|-..-..|..+...+ ......+...++.+.. +.+.....-..-+..+.+
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhh-cCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHh
Confidence 355555555678887777776554 222221111232222111 1224454444444432 112222333445566667
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH--HH
Q 037409 129 MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLV--AL 206 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~ 206 (603)
.+++......+.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.+.|.... ..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 7776655543322 23456666667777778888888877777765554 4455677777888777665533 33
Q ss_pred HHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH--------------HHHHHHHhc
Q 037409 207 KLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYN--------------SLICGFCCV 272 (603)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~ 272 (603)
.-++.+...+ +...-..++..+ . .......+.+..+... +++..... ..+.-+.+
T Consensus 159 ~R~~~al~~~------~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 159 ERIRLAMKAG------NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCC------CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHHHHHHHHHh-
Confidence 3334444332 222222222211 0 1111111222222221 11221110 01122222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037409 273 DDWKEAKCLFIEMMDNGVQPDVVTFNAMIN----YNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRA 348 (603)
Q Consensus 273 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (603)
.+.+.|...+....+.. ..+......+-. .....+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777775433 223332222222 2223342445555555544432 2333333344444566888888
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 037409 349 RELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN 428 (603)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (603)
...|..+..... ......--+..++...|+.++|..+|..+... . .-|..+. ..+.|..... ...
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lA--a~~Lg~~~~~-------~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVA--AQRIGEEYEL-------KID 369 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHH--HHHTTCCCCC-------CCC
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHH--HHHcCCCCCC-------CCC
Confidence 888877654311 12222334455667778888888888877642 1 1232221 1222221000 000
Q ss_pred CCCC---CH---HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHH
Q 037409 429 DVVP---DS---FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFH 493 (603)
Q Consensus 429 ~~~~---~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (603)
.+.+ .. ......+..+...|....|...+..+.+. .+......+.......|..+.+.....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0000 00 01112344566778888888877777653 233333445555556666666655443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.82 E-value=25 Score=31.84 Aligned_cols=81 Identities=10% Similarity=-0.045 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
-++.....+...|.+.+++.+|+..|- . +-.+....+..++.-+...+...++--++ ...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfi---------------aRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYC---------------ARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHH---------------HHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHH---------------HHHH
Confidence 467788888899999999999888772 2 23333456655555544443322211111 2223
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037409 547 RGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~ 566 (603)
--|.-.++...|...++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34566777877777666555
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.62 E-value=8.2 Score=31.75 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHH
Q 037409 517 EGQMDKANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLS 576 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (603)
.+...++..+|..|...|+-.. ...|...+..+...|++++|.++|+.-++.+-. |-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~-P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR-PYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-SHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cHHH
Confidence 4557789999999988875544 556788888889999999999999999988776 5443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.52 E-value=11 Score=26.72 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLN-LLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLF 174 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 174 (603)
..++|..+-+.+...+ +..+.. .-+..+...|+|++|..+.+.. +.||...|.+|... +.|-.+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 4666666666665543 222222 1234556667777766655443 25666666655443 566666666666
Q ss_pred HHHHhcC
Q 037409 175 KKLNVFA 181 (603)
Q Consensus 175 ~~~~~~~ 181 (603)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.49 E-value=15 Score=27.76 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 415 LGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
.-+..+-++.+...+..|++......+.+|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455566666667777888888888888888888888888887776422 233445555544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.34 E-value=26 Score=30.40 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=70.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCC
Q 037409 89 TMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFT--PNTVTFNFLINGLCAEGR 166 (603)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 166 (603)
..+.+.|++++|+......++.. |.|...-..+++.+|-.|++++|.+-++...+..+. +....|..+|++-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567888888888888887776 677777778888888888888888888877776332 1122333343321
Q ss_pred HhHHHHHHHHHHhcCCCC----cHHHH-HHHHHHH--HhcCChHHHHHHHHHHHHh
Q 037409 167 IMEAARLFKKLNVFACDP----NVVTF-NTLINGL--CRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~----~~~~~-~~l~~~~--~~~g~~~~A~~~~~~~~~~ 215 (603)
..=.++..-+-.| ....| ..++.+. ...|+.++|.++-.++.+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111111111111 11223 3344433 3468999998888888765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.28 E-value=31 Score=31.20 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=19.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 327 PDTVTYNSLMDGFCLVGRISRARELF 352 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 352 (603)
-|+.....+...|.+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35666777778888888888887766
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.81 E-value=10 Score=26.75 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLN-LLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLF 174 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 174 (603)
..++|..+-+.+...+ +..+.. .-+..+...|+|++|..+.+.. +.||...|.+|.. .+.|-.+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---QDEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 4566666666555543 222221 1233455666666666554432 2456666655543 2566666666666
Q ss_pred HHHHhcC
Q 037409 175 KKLNVFA 181 (603)
Q Consensus 175 ~~~~~~~ 181 (603)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5655544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.76 E-value=13 Score=26.48 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHH
Q 037409 167 IMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIID 232 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (603)
.=+..+-++.+....+-|++....+.++++.+.+++..|+++|+.+.... .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~----~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA----GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh----cCchhhHHHHHH
Confidence 33555666666666667777777777777777777777777777776652 233344554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 603 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.5 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.28 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.95 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.95 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.85 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.83 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.83 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.7 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.46 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.34 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.29 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.08 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.95 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.7 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.58 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.05 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.98 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.14 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.47 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 87.08 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.33 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.7e-24 Score=208.32 Aligned_cols=380 Identities=10% Similarity=0.017 Sum_probs=233.4
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 037409 196 LCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW 275 (603)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (603)
+.+.|++++|++.++++.+. .|.+...+..+..++...|++++|...+++..+.. +-+..+|..++..|...|++
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 33444444444444444443 12334444444444444455555555544444432 11334444455555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 276 KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSM 355 (603)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 355 (603)
++|+..+....... +.+..............+....+............. ...............+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHh
Confidence 55555555554432 222333333333333334444444333333333222 2233333444455555666666666555
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 037409 356 VSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSF 435 (603)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 435 (603)
.... +.+...+..+...+...|++++|...+++.+...+ .+...+..+...+...|++++|...+++....... +..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHH
Confidence 5542 22344555566666667777777777776665432 24556667777777777777777777777654332 555
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 515 (603)
.+..+...+.+.|++++|...|+++.+.. +.+..++..++.++...|++++|...++......+. +...+..++.++.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHH
Confidence 66667777778888888888888877755 556777888888888888888888888887776544 6777788888888
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 516 KEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
..|++++|+..++++++.. |.+..++..++.+|.+.|++++|...++++++..+. ++..+..++.+|.+.|+
T Consensus 317 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Confidence 8888888888888888764 456777888888888888888888888888876554 77788888888887775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.3e-24 Score=204.33 Aligned_cols=383 Identities=14% Similarity=0.065 Sum_probs=262.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
...+.+.|++++|++.++++.+.. +.+..++..+..++.+.|++++|+..|+++++.. |.+..++..+..++...
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHhhhh
Confidence 344455566666666666655542 2244555556666666666666666666666542 34455566666666666
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
|++++|...+....+... .+..............+....+........... .................+....+...+
T Consensus 81 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHH
Confidence 666666666666555422 133333333333334444444444443333332 223334444445555666666666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037409 318 ELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRP 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 397 (603)
.......+ .+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|+..+++...... .
T Consensus 159 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 235 (388)
T d1w3ba_ 159 LKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-h
Confidence 66655532 245566667777777788888888887777653 23456677777888888888888888888776533 3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+...+..+...+.+.|++++|+..+++..+..+. +..++..+...+...|++++|.+.++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 5666777888888889999999999888776433 56778888888999999999999999888765 678888899999
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
++.+.|++++|...|++.++..+. +..++..++.++...|++++|+..|+++++.. |.+..++..++.+|.+.||
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999987665 67888999999999999999999999999875 4568889999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.6e-15 Score=137.67 Aligned_cols=274 Identities=11% Similarity=-0.044 Sum_probs=176.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 037409 299 AMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ 378 (603)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (603)
.....+.+.|++++|...|+++++..+. +...+..+..++...|+++.|...+.++.+.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3445566667777777777766665432 45566666666666677777776666666653 224455556666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 037409 379 KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQ 458 (603)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 458 (603)
++++|.+.++++..... +............. ..+.......+..+...+.+.++...+.
T Consensus 102 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTP--AYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTST--TTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhcc--chHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 66666666666655421 11100000000000 0000001111223334456777888888
Q ss_pred HHHHcCC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 037409 459 AIRNCKC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP 537 (603)
Q Consensus 459 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (603)
++.+... ..+..++..+...+...|++++|...+++.....+. +...|..++.++...|++++|++.++++++.. +.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 7776432 345677888888999999999999999998887665 67888899999999999999999999998864 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHcCCcHHHHHHH
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVV---------SDLSLSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~eA~~~ 597 (603)
+..++..++.+|.+.|++++|+..|+++++..+.. ....++..+..++...|+.+.+...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67788899999999999999999999988642221 1223566677777777777655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.3e-15 Score=136.70 Aligned_cols=231 Identities=15% Similarity=0.099 Sum_probs=162.3
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKM 129 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (603)
|-.+......|++++|+..|+++++.+|. +..+|..++.++...|++++|+..|.++++.. |.+...+..++.++...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 44555566789999999999999999876 78999999999999999999999999999875 56788899999999999
Q ss_pred CCcchHHHHHHHHHHCCCCCCHh--------------hHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCcHHHHHHHHH
Q 037409 130 GITSGAFVVLGRILRSCFTPNTV--------------TFNFLINGLCAEGRIMEAARLFKKLNVFA-CDPNVVTFNTLIN 194 (603)
Q Consensus 130 g~~~~a~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 194 (603)
|++++|...++++....+..... .....+..+...+.+.+|...|.+..+.. -..+...+..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999999988764321100 00111122334455666666666655432 1223455666666
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
.+...|++++|+..|++.+.. .+.+..+|..+...+...|++++|.+.|++..+.. +-+..+|..++.+|.+.|+
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhccccccccc----ccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCC
Confidence 677777777777777777665 24456666667777777777777777777666542 2245566667777777777
Q ss_pred HHHHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMD 287 (603)
Q Consensus 275 ~~~A~~~~~~~~~ 287 (603)
+++|+..|++.++
T Consensus 256 ~~~A~~~~~~al~ 268 (323)
T d1fcha_ 256 HREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.7e-12 Score=117.17 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=136.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 367 YNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG-NLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
++.+...+.+.+.+++|+.+++++++..+. +...|+....++...| ++++|+..++...+..+. +..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 444555566666777777777777665332 4556666666666654 467777777776655433 5666666677777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCC------
Q 037409 446 KNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQ------ 519 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------ 519 (603)
..|++++|+..++++.+.. +.+...|..++.++.+.|++++|...++++++.++. +...|+.++.++...+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 7777777777777777655 556777777777777777777777777777776555 66667766666655544
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 520 MDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 520 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
+++|++.+.++++.. |.+...|..+...+... ..+++.+.++...+..+.+.++..+..++.+|.
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 456777777777664 44566666666554433 346666667766665555345555556666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.1e-10 Score=106.13 Aligned_cols=209 Identities=12% Similarity=-0.010 Sum_probs=169.0
Q ss_pred hhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 53 DRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK-QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
+.+....+.+++|+..+++++..+|. +..+|+....++...| ++++|+..++.+++.. +-+..+|..+..++.+.|+
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhcc
Confidence 44445568899999999999999887 8899999999998877 5899999999998876 6678899999999999999
Q ss_pred cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC------hHHH
Q 037409 132 TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRN------TLVA 205 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 205 (603)
+++|+..+.++++..+. +..+|..+...+...|++++|++.++++.+.. +.+..+|+.+..++.+.+. +++|
T Consensus 128 ~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 128 PSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHh
Confidence 99999999999998655 78899999999999999999999999999875 5577889888877777665 5789
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-ChhhHHHHHHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINP-NVITYNSLICGFC 270 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 270 (603)
++.+.++++. .|.+...|+.+...+. ....+++.+.++...+....+ +...+..++..|.
T Consensus 206 i~~~~~al~~----~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 206 VQYTLEMIKL----VPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHH----STTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 9999999987 3567777877766554 444678888887776643222 3444555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=3.1e-10 Score=103.29 Aligned_cols=220 Identities=11% Similarity=0.041 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037409 62 SNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK--------------QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLC 127 (603)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (603)
.+.+..+|++++...|. +...|...+.-+...+ ..++|..+|++++....+.+...+...+..+.
T Consensus 32 ~~Rv~~vyerAl~~~~~-~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34577789998887655 6777877666543322 34677777777776544555566666777777
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHhcCChHHHH
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLING-LCRTRNTLVAL 206 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 206 (603)
..|+++.|..++++++...+.....+|...+..+.+.|+++.|+++|++..+.+ +.+...|...... +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHH
Confidence 777777777777777766444444567777777777777777777777776653 3333444443332 23356777777
Q ss_pred HHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 207 KLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRN-INPN--VITYNSLICGFCCVDDWKEAKCLFI 283 (603)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 283 (603)
.+|+.++.. .+.+...|...+..+...|+++.|..+|++..... ..|+ ...|...+..-...|+.+.+.++++
T Consensus 190 ~i~e~~l~~----~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 190 KIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHh----hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777776 34556677777777777777777777777766542 2222 2356666665566677777777666
Q ss_pred HHHH
Q 037409 284 EMMD 287 (603)
Q Consensus 284 ~~~~ 287 (603)
++.+
T Consensus 266 r~~~ 269 (308)
T d2onda1 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=7.9e-10 Score=103.27 Aligned_cols=294 Identities=12% Similarity=0.018 Sum_probs=157.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHH
Q 037409 304 NCKDGKMDKVNRLLELMIQRGVNPD----TVTYNSLMDGFCLVGRISRARELFVSMVSKGCR-HD----VYSYNILINAN 374 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~ 374 (603)
+...|++++|..++++.++.....+ ...+..+...+...|++++|...++++.+.... ++ ...+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3444444444444444444321111 112333444444555555555555544432100 00 12223334445
Q ss_pred HhcCChHHHHHHHHHHHhC----CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCHHhHHHHHHH
Q 037409 375 CKDQKVEDAVCLYREMLSE----RIRPS---VITYNTLLSGLFQVGNLGDALKLIDKMQLND----VVPDSFTFATYIDG 443 (603)
Q Consensus 375 ~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~ 443 (603)
...|++..+...+.+.... ..... ...+..+...+...|+++.+...+....... .......+......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 5555555555555544321 11111 1233445556666777777777766654321 11223344445555
Q ss_pred HHhCCCHHHHHHHHHHHHHcC--CCC----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC---HhHHHHHHHHH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCK--CEL----RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD---VVTCSTMIHWL 514 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 514 (603)
+...++...+...+.+..... ... ....+..+...+...|++++|...+++..+..+..+ ...+..++.++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 666677777777766654321 111 123455566677778888888888887766433322 33455677788
Q ss_pred HHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC---CCCHHHHHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAK----NCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLV---VSDLSLSSKVV 582 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~~~l~ 582 (603)
...|++++|...+++++.. +..|+ ..++..++.+|...|++++|.+.++++++. +.. .........+.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 8888888888888877632 32332 346777888888888888888888887643 111 01233455566
Q ss_pred HHHHcCCcHHHHHHH
Q 037409 583 DLLSKDKKYRECLNQ 597 (603)
Q Consensus 583 ~~~~~~g~~~eA~~~ 597 (603)
..+...|+.+|+...
T Consensus 342 ~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 342 RQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTTCSCHHHHH
T ss_pred HHHHhcCCChHHHHH
Confidence 667777877777543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=8.2e-10 Score=103.16 Aligned_cols=272 Identities=12% Similarity=0.044 Sum_probs=172.0
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPG----MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGL-FPD----LFVLN 120 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~ 120 (603)
.+.+.+....|++++|+..|++++...|..+ ..++..++.++...|++++|+..|+++.+... .++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 4566666778999999999999998876643 34677788899999999999999998865310 111 22445
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHC----CCCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC----CCCcHHHH
Q 037409 121 LLINCLCKMGITSGAFVVLGRILRS----CFTP---NTVTFNFLINGLCAEGRIMEAARLFKKLNVFA----CDPNVVTF 189 (603)
Q Consensus 121 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 189 (603)
.+...+...|++..+...+...... .... ....+..+...+...|+++.+...+++..... ......++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 5667788888888888888776542 1111 12345556677778888888888888776532 11223345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHH
Q 037409 190 NTLINGLCRTRNTLVALKLFEEMVNEFGAICKP---DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINP---NVITYN 263 (603)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 263 (603)
......+...++...+...+.+........... ....+..+...+...|++++|...+.......... ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 555667777888888888877766543111111 12234555666777788888887777765542221 123445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 264 SLICGFCCVDDWKEAKCLFIEMMDN----GVQPD-VVTFNAMINYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 264 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (603)
.+...+...|++++|...++..... +..|+ ...+..+...+...|++++|.+.+++.+
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5666777777777777777666431 22222 2345555556666666666666666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=4.6e-10 Score=102.07 Aligned_cols=224 Identities=9% Similarity=0.012 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC--------------ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037409 345 ISRARELFVSMVSKGCRHDVYSYNILINANCKDQ--------------KVEDAVCLYREMLSERIRPSVITYNTLLSGLF 410 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (603)
.+.+..+|++++..- +.+...|...+..+...+ ..++|..+|++.+....+.+...|...+..+.
T Consensus 32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455777787777652 234445555444443322 23667777777776544445566677777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH-HhCCChhHHH
Q 037409 411 QVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGL-CKMGRLKTAC 489 (603)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~ 489 (603)
..|+++.|..+++++...........+...+..+.+.|+++.|.++|+.+.+.. +.+...|...+... ...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHH
Confidence 777888888888777765443334466777777777777788888887777654 44455555444432 3356777788
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 490 KLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-CVP--SEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 490 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
.+|+.+.+..+. +...|..++..+...|+.+.|..+|+++++.. ..| ....|...+..-...|+.+.+.++++++.
T Consensus 190 ~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888777776444 56777777777777788888888888777653 122 23456666666667778888877777777
Q ss_pred HCCCC
Q 037409 567 AEKLV 571 (603)
Q Consensus 567 ~~~~~ 571 (603)
+.-+.
T Consensus 269 ~~~~~ 273 (308)
T d2onda1 269 TAFRE 273 (308)
T ss_dssp HHTTT
T ss_pred HHCcc
Confidence 65443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=3.2e-11 Score=111.62 Aligned_cols=234 Identities=8% Similarity=-0.023 Sum_probs=162.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHHHH
Q 037409 342 VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ--KVEDAVCLYREMLSERIRPSVITYN-TLLSGLFQVGNLGDA 418 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a 418 (603)
.|++++|+..++.+.+.. +.+...|..+..++...+ ++++|+..+.++...... +...+. .....+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 345677888888877764 335556666666666654 467888888887775333 444443 344566677888888
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 419 LKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
+..++.+...++. +...+..+...+...|++++|...++...+.. + . ...+...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~---~-~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL-L---K-ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH-H---H-HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH-H---H-HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 8888888776544 67777778888888888877765554443321 1 1 112333445567777888888888776
Q ss_pred CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHH
Q 037409 499 GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLS 578 (603)
Q Consensus 499 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 578 (603)
.+. +...+..++..+...|++++|+..+.+....+ +.+..++..++.++...|++++|.+.++++++..|. ....|
T Consensus 238 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~--~~~y~ 313 (334)
T d1dcea1 238 RAE-PLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM--RAAYL 313 (334)
T ss_dssp CCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG--GHHHH
T ss_pred Ccc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc--cHHHH
Confidence 544 55566677778888889999999998888764 445677888889999999999999999999886543 66777
Q ss_pred HHHHHHHHc
Q 037409 579 SKVVDLLSK 587 (603)
Q Consensus 579 ~~l~~~~~~ 587 (603)
..+...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 777766653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=6.6e-11 Score=105.09 Aligned_cols=222 Identities=11% Similarity=-0.069 Sum_probs=152.3
Q ss_pred CCHHHHHHHHHHHHHcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 037409 343 GRISRARELFVSMVSKGCRH---DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDAL 419 (603)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 419 (603)
.+.+.++..+++++...... ...++..+..+|.+.|++++|+..|++.+...+. +..+|..+..++...|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhh
Confidence 34667777777877653211 1245667788899999999999999999886443 6788999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC
Q 037409 420 KLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 499 (603)
..|+++.+..+. +..++..+..++...|++++|...++...+.. +.+......+...+.+.+..+.+..+........
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999999876543 55677788888999999999999999988765 4556665556666666666666666666665542
Q ss_pred CCCCHhHHHHHHHHHHHcCC----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 500 PIPDVVTCSTMIHWLCKEGQ----MDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 500 ~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.. ...++ ++..+..... .+.+...+....... +....++..++..|...|++++|.+.+++++..++.
T Consensus 170 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 170 KE--QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CC--STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hh--hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 22 22222 2222222111 222222222222211 112346777899999999999999999999986654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=2.9e-11 Score=111.90 Aligned_cols=233 Identities=8% Similarity=-0.018 Sum_probs=158.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCcchHH-HHHHHHHhcCChHHH
Q 037409 307 DGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVG--RISRARELFVSMVSKGCRHDVYSYN-ILINANCKDQKVEDA 383 (603)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A 383 (603)
.|.+++|...++.+.+..+. +...+..+..++...+ ++++|...+..+.... +++...+. .....+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 34566777777777766433 5555666655555544 4778888888877763 22334433 344566667888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 384 VCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
+..++.++..++. +...|..+...+...|++++|...+...... .|+ .......+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 8888887776543 6777777888888888877765555443321 111 112333445566777788888877765
Q ss_pred CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037409 464 KCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFC 543 (603)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 543 (603)
. +++...+..++..+...|+.++|...+.+..+.++. +..+|..++.++...|++++|++.++++++.+ |.+...|.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~ 314 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLD 314 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHH
Confidence 5 556666777778888889999999999998886554 66778888999999999999999999999864 33455666
Q ss_pred HHHHHHH
Q 037409 544 TLLRGFV 550 (603)
Q Consensus 544 ~l~~~~~ 550 (603)
.|...+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.2e-10 Score=101.62 Aligned_cols=152 Identities=10% Similarity=-0.104 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 60 ITSNEAVYFFDCMIKMKPSP---GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
+..+.|+..+++.+...+.. ....|..++.+|.+.|++++|+..|+++++.. |.++.++..++.++...|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 45667777888887653321 34578888899999999999999999999876 667888999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 137 VVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
..|+++++..+. +..++..+...+...|++++|...|++..+.. +.+......+.....+.+..+.+..+......
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 999999988654 56778888888999999999999999888763 33444444444455555555555555554444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.6e-09 Score=77.96 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=86.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.-+..+.+.|++++|+..|+++++..|. +...|..++.++...|++++|+..++++++.+ +.+...|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 3466778888888888888888887666 78888888888888888888888888888875 667888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 554 KKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
++++|+..+++.++..+. ++..+..+..+
T Consensus 86 ~~~~A~~~~~~a~~~~p~--~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEAN--NPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHHHTTCTT--CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence 888888888888876654 66666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1e-08 Score=82.39 Aligned_cols=102 Identities=10% Similarity=-0.053 Sum_probs=57.6
Q ss_pred HHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037409 476 INGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
+..|.+.|++++|+..|+++++.++. +...|..++.+|...|++++|+..|+++++.+ +.+..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34455566666666666666655444 55556666666666666666666666666553 34455556666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 556 SKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 556 ~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
++|...++++.+..+. ++.....+
T Consensus 95 ~eA~~~~~~a~~~~p~--~~~~~~~l 118 (159)
T d1a17a_ 95 RAALRDYETVVKVKPH--DKDAKMKY 118 (159)
T ss_dssp HHHHHHHHHHHHHSTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC--CHHHHHHH
Confidence 6666666666554443 44444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.8e-08 Score=82.43 Aligned_cols=124 Identities=11% Similarity=-0.059 Sum_probs=80.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
.+...|++++|++.|+++ .++++.++..++.+|...|++++|+..|++.++.++. +...|..++.++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 445666777776666543 2456666667777777777777777777777776555 56667777777777777777
Q ss_pred HHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 523 ANDLLLDMEAKNC--------------VP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 523 A~~~~~~~~~~~~--------------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
|+..|++++.... .. ...++..++.++.+.|++++|.+.++++.+..+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 7777777654310 00 1245566777777777777777777777765554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.3e-08 Score=73.71 Aligned_cols=107 Identities=11% Similarity=-0.079 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG 518 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 518 (603)
.-...+...|++++|+..|+++++.. |.++..|..+..+|.+.|++++|+..+.+.++.++. +...|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 34567788899999999999998876 778889999999999999999999999999988776 8888999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 519 QMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 519 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
++++|+..|++.++.. |.+...+..+.++
T Consensus 86 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~l 114 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 114 (117)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999874 4456666555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=7.2e-09 Score=87.45 Aligned_cols=100 Identities=14% Similarity=-0.042 Sum_probs=83.8
Q ss_pred CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHH
Q 037409 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMI 511 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 511 (603)
|+...+...+..+.+.|++++|+..|+++++.. |.++..|..++.+|.+.|++++|+..|+++++.++. +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 566777778888888899999999998888776 668888888888888899999999999888887665 677888888
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+|...|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888889999998888888764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.1e-07 Score=78.60 Aligned_cols=124 Identities=9% Similarity=-0.104 Sum_probs=83.9
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 52 NDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
.+......|+++.|+..|+++ .++++.+|..++.++...|++++|++.|+++++.+ +.+...+..++.++.+.|+
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhcc
Confidence 344445577888888888765 33466777788888888888888888888888776 5667777778888888888
Q ss_pred cchHHHHHHHHHHCCCCCC---------------HhhHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 037409 132 TSGAFVVLGRILRSCFTPN---------------TVTFNFLINGLCAEGRIMEAARLFKKLNVF 180 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 180 (603)
+++|...|++.+....... ..++..+..++.+.|++++|.+.++.....
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888877765321110 123444555566666666666666665544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.83 E-value=1.6e-08 Score=75.32 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 508 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
-.++..+.+.|++++|+..++++++.+ |.+..+|..++.++.+.|++++|+..++++++..+. +...+..++.+|..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc--cccchHHHHHHHHH
Confidence 345677888888888888888888875 556888888888888888888888888888886654 78888888888888
Q ss_pred CCcHHHHHHHHHhhc
Q 037409 588 DKKYRECLNQFRHLL 602 (603)
Q Consensus 588 ~g~~~eA~~~~~~~l 602 (603)
.|++++|++.+++.|
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888888888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=1.9e-08 Score=84.83 Aligned_cols=102 Identities=12% Similarity=-0.033 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
|+...+...+..+.+.|++++|+..|+++++.+|. +...|..++.+|.+.|++++|+..|+++++.. |-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 67778888999999999999999999999998776 88999999999999999999999999999875 55688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
.+|...|++++|...++++++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999986443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=9.2e-08 Score=76.68 Aligned_cols=121 Identities=7% Similarity=-0.125 Sum_probs=98.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE 517 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 517 (603)
......|.+.|++++|+..|+++.+.+ |.+...|..++.+|...|++++|...|+++++.++. +...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 344567889999999999999999887 778999999999999999999999999999998766 788999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHH
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF--VQNNKKSKVVVL 561 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 561 (603)
|++++|+..+++++... +.+...+..+..+. ...+.++++...
T Consensus 92 g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999875 44566665554443 334445555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=1.3e-07 Score=84.55 Aligned_cols=133 Identities=11% Similarity=-0.015 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---C--CChHHHHHHHHHHHh-CCChhHHHHHHHHHhhC----CCCC-CH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKC---E--LRIETYNCLINGLCK-MGRLKTACKLFHRLQHK----GPIP-DV 504 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~p-~~ 504 (603)
+|..+..+|.+.|++++|...+++..+... . ....++..++..|.. .|++++|...+++..+. +..+ -.
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 344444455555555555555544432100 0 012233344444422 35555555555544331 0000 02
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS------EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 505 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.++..++..+...|++++|++.++++........ ...+...+..+...|+++.|...++++.+.
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2344455555555555555555555554321100 012233334444555555555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.77 E-value=1.8e-05 Score=69.26 Aligned_cols=224 Identities=10% Similarity=-0.069 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHhhHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGAFVVLGRILRSCFTPNTVTFN 155 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (603)
|+..+..++..+.+.+++++|++.|+++.+.| +...+..|...|.. ..++..|...++.....+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566677777777788888888888877765 55666666666665 456667777777766654 334444
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCCChhhH
Q 037409 156 FLINGLCA----EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKPDVVTY 227 (603)
Q Consensus 156 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (603)
.+...+.. ..+.+.|...++.....| .......+...+.. ......+...+...... .+...+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~ 145 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------NDGDGC 145 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc------cccchh
Confidence 44444432 346677777777766654 22222233333322 33455566666655543 345556
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037409 228 NSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPDVVTFNA 299 (603)
Q Consensus 228 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 299 (603)
..+...+.. ..+...+...++...+.| +......+...|.. ..+.++|+.+|+...+.| ++..+..
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~ 219 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 219 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHH
Confidence 666666654 334455556666655543 44555555555543 446666777776666654 3445555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 300 MINYNCK----DGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 300 l~~~~~~----~~~~~~a~~~~~~~~~~~ 324 (603)
|...|.+ ..+.++|.++|++....|
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5555543 225666666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.73 E-value=3.4e-05 Score=67.37 Aligned_cols=223 Identities=11% Similarity=-0.052 Sum_probs=124.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK----DQKVEDAVCLYREMLSERIRPSVITYNTLL 406 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 406 (603)
.+..|...+...+++++|++.|++..+.| +...+..|..+|.. ..+...|...+......+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 33444444445555555555555555443 33444444444443 335555555555554432 222223332
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 037409 407 SGLFQ----VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC----KNGFVLEAVQVFQAIRNCKCELRIETYNCLING 478 (603)
Q Consensus 407 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 478 (603)
..+.. ..+.+.|...++.....+.. .....+...+. .......+...+..... ..+...+..+...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhhh
Confidence 22221 34556666666666554422 12222222222 23445566666665554 3355666667766
Q ss_pred HHh----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 479 LCK----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 479 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
+.. ..+...+...++...+.| +......++..+.. ..++++|+.+|++..+.| ++..+..|+..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 665 345667777777776643 55666666666665 567888888888888865 4566677777776
Q ss_pred h----cCCHHHHHHHHHHHHHCCCC
Q 037409 551 Q----NNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 551 ~----~g~~~~a~~~~~~~~~~~~~ 571 (603)
+ ..+.++|.++++++.+.|..
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 5 34778888888888877654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=3.5e-08 Score=74.31 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVPS-EVTFCTLLRG 548 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 548 (603)
..+++.+...+++++|++.|++.+..++. +..++..++.++.+.+ ++++|+.++++++..+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 44556666667777777777777776554 6666666777666544 33457777777666431122 2356667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
|.+.|++++|++.++++++..|.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhHHHHHHHHHHHHhCcC
Confidence 77777777777777777765543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.69 E-value=9.6e-08 Score=71.01 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
..++..+.+.|++++|...|+++++.++. +...|..++.++.+.|++++|+..++++++.. |.+..++..++.+|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 34566677777888888888877776655 67777777777888888888888888877765 55677777778888888
Q ss_pred CCHHHHHHHHHHHH
Q 037409 553 NKKSKVVVLLHKMA 566 (603)
Q Consensus 553 g~~~~a~~~~~~~~ 566 (603)
|++++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 88888877777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=2.7e-07 Score=74.60 Aligned_cols=85 Identities=6% Similarity=-0.099 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
+|+.++.+|.+.|++++|+..++++++.+ |.+..++..++.+|...|++++|...++++++..|. ++.+...+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~--n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 56667777888888888888888888765 557777888888888888888888888888876654 677776776666
Q ss_pred HcCCcHHH
Q 037409 586 SKDKKYRE 593 (603)
Q Consensus 586 ~~~g~~~e 593 (603)
.+.+...+
T Consensus 141 ~~~~~~~~ 148 (170)
T d1p5qa1 141 QRIRRQLA 148 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=5.1e-07 Score=80.58 Aligned_cols=174 Identities=10% Similarity=-0.130 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhCCChhHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC----KCE-LRIETYNCLINGLCKMGRLKTA 488 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A 488 (603)
++++|.++|.+ ....|...+++++|.+.|.++.+. +.+ ....+|..++.+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~---------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQ---------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHH---------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHH---------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45666666554 356788889999999999887653 211 1246789999999999999999
Q ss_pred HHHHHHHhhCCCC-----CCHhHHHHHHHHHHH-cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 037409 489 CKLFHRLQHKGPI-----PDVVTCSTMIHWLCK-EGQMDKANDLLLDMEAK----NCVP-SEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 489 ~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~ 557 (603)
...+++..+.... ....++..++..|.. .|++++|++.++++.+. +.++ -..++..++..+...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 9999987763111 114456677777755 59999999999998753 2111 13457889999999999999
Q ss_pred HHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 558 VVVLLHKMAAEKLVVSD-----LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 558 a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|...++++.......+. ...+...+.++...|+++.|...+++..
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999876544121 1345567778889999999999998864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.7e-07 Score=69.31 Aligned_cols=103 Identities=12% Similarity=0.032 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC---hhHHHHHHHHHhhCCCCCC-HhHHHHHHHH
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGR---LKTACKLFHRLQHKGPIPD-VVTCSTMIHW 513 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 513 (603)
..++..+...+++++|.+.|+.....+ |.++.++..++.++.+.++ +++|+.+++++...++.|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457778888899999999999999877 7788999999999987554 4569999999988665544 3478889999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
|.+.|++++|++.|+++++.. |.+....
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~-P~~~~A~ 109 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE-PQNNQAK 109 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhC-cCCHHHH
Confidence 999999999999999999965 3344443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=3.5e-07 Score=69.83 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS-------EVTFC 543 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 543 (603)
.+..++..+.+.|++++|+..|++.++.++. +...|..++.+|.+.|++++|++.++++++.. +.+ ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3456677778888888888888888877665 67777788888888888888888888877642 111 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHH
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLS 578 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 578 (603)
.++..+...+++++|+..+++.+ ... +++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal--~~~-~~~~~~ 115 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSL--AEH-RTPDVL 115 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--HHC-CCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH--hcC-CCHHHH
Confidence 67777777778888887777765 333 455443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.4e-06 Score=68.79 Aligned_cols=84 Identities=7% Similarity=-0.120 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
.+|+.+..+|.+.|++++|+..+++.++.+|. +...|..++.++...|++++|+..|+++++.+ |.+..+...+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 46778889999999999999999999998766 88899999999999999999999999999975 45677776666665
Q ss_pred HhcCCH
Q 037409 550 VQNNKK 555 (603)
Q Consensus 550 ~~~g~~ 555 (603)
.+.+..
T Consensus 141 ~~~~~~ 146 (170)
T d1p5qa1 141 QRIRRQ 146 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.46 E-value=3.1e-06 Score=68.05 Aligned_cols=93 Identities=9% Similarity=-0.048 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
+|..++.+|.+.|++++|+..++++++.+ |.+..+|..++.++...|++++|...++++++..|. +..+...+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~--n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 45567777778888888888888887765 567777788888888888888888888888776553 666766666666
Q ss_pred HcCCcHH-HHHHHHHhh
Q 037409 586 SKDKKYR-ECLNQFRHL 601 (603)
Q Consensus 586 ~~~g~~~-eA~~~~~~~ 601 (603)
.+.+... ...+.+.+|
T Consensus 143 ~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 5555443 334444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.46 E-value=2.6e-06 Score=67.15 Aligned_cols=79 Identities=11% Similarity=-0.070 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 505 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
.+|..++.+|.+.|++++|++.++++++.+ |.+..+|..++.++...|++++|...++++++..|. +..+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN--NLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence 467778888999999999999999998876 667888999999999999999999999999887664 66666665554
Q ss_pred HH
Q 037409 585 LS 586 (603)
Q Consensus 585 ~~ 586 (603)
..
T Consensus 145 ~~ 146 (153)
T d2fbna1 145 VN 146 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=2.7e-06 Score=68.61 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=72.6
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
+...|..++.++.+.|++++|+..+.++++.. +.+..+|..++.++...|++++|+..++++++..+. +..+...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~--n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 34567778888999999999999999999876 667888999999999999999999999999987654 777777777
Q ss_pred HHHHcCCcHHHH
Q 037409 583 DLLSKDKKYREC 594 (603)
Q Consensus 583 ~~~~~~g~~~eA 594 (603)
.+..+.....++
T Consensus 153 ~~~~~l~~~~~~ 164 (169)
T d1ihga1 153 KVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776665555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.9e-06 Score=65.60 Aligned_cols=107 Identities=8% Similarity=-0.012 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC-C-----HhHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP-D-----VVTCST 509 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-----~~~~~~ 509 (603)
.+..+...+...|++++|+..|++.++.+ |.+...+..+..+|.+.|++++|...++++++..+.. . ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34567778889999999999999998876 6688899999999999999999999999988743221 1 235667
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
++..+...+++++|++.|++.+.. .++......+
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 118 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 777888889999999999988875 3565554433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2.7e-07 Score=89.28 Aligned_cols=227 Identities=9% Similarity=-0.028 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHH
Q 037409 312 KVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDV-YSYNILINANCKDQKVEDAVCLYREM 390 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 390 (603)
+|.+.|+++.+.... ....+..+..++...+++++| |++++..+ |+. ...+ +........+..+++.++..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~--~e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK--VEQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT--HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh--HHHHHHHHHHHHHHHHHHHh
Confidence 577788887765221 234455566677777777665 66665542 111 1111 11111112245566677766
Q ss_pred HhCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 037409 391 LSERIRPSVITYNTLLSG--LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR 468 (603)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 468 (603)
......++..-....... ....+.++.++..+....... .++...+..+...+.+.|+.++|...++...... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 654433333322222211 223444555555444433322 2244556666777778888888887777665422 2
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+..++..+...|++++|...|+++.+..|. +...|+.++..+...|+..+|+..|.+.+... +|-..++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 356777888888888888888888888887665 67788888888888888888888888888775 6777778887777
Q ss_pred HHhc
Q 037409 549 FVQN 552 (603)
Q Consensus 549 ~~~~ 552 (603)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.34 E-value=7.1e-06 Score=64.59 Aligned_cols=77 Identities=10% Similarity=-0.111 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
.+|..++.+|.+.|++++|+..++++++.+|. +..+|..++.++...|++++|+..|++.++.+ |.+..+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 46788999999999999999999999998766 88999999999999999999999999999975 4456565555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.2e-07 Score=91.89 Aligned_cols=266 Identities=8% Similarity=-0.071 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 277 EAKCLFIEMMDNGVQPD-VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDT-VTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 277 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
+|.+.|++..+. +|+ ...+..+..++...++++++ +++++... |+. ...+.....+ ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHHH
Confidence 688888888764 343 44566677778778878765 67776552 211 1111111111 1123456677777
Q ss_pred HHHcCCCCCcchHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 037409 355 MVSKGCRHDVYSYNILI--NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVP 432 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 432 (603)
..+....++..-..... ......+.++.++..+....... +++...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 66554333333222222 22233455666666665544432 2355667778888889999999998887765421
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIH 512 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 512 (603)
....+..+...+...|++++|...|+++.+.. |.+...|+.++..+...|+..+|...|.+.+...+ |...++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHH
Confidence 13467778889999999999999999999876 77889999999999999999999999999998754 47788888887
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSE----VTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
.+.+..+..++. ...... ..+..+...+...+..++..++.+++.
T Consensus 229 ~~~~~~~~~~~~---------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 229 ALSKALESRDEV---------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHHHHTTSCCCC---------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred HHHHhhhhhhhh---------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 776544322110 011111 123444445566666666665555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.32 E-value=1.4e-05 Score=63.97 Aligned_cols=95 Identities=6% Similarity=-0.071 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
.+|..+..+|.+.|++++|+..+++.++.++. +..+|..++.++...|++++|+..|+++++.+ |.+..+...+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45777888999999999999999999998776 88899999999999999999999999999975 56677777766666
Q ss_pred HhcCCH-HHHHHHHHHHH
Q 037409 550 VQNNKK-SKVVVLLHKMA 566 (603)
Q Consensus 550 ~~~g~~-~~a~~~~~~~~ 566 (603)
...+.. +...+.+..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 555544 33445555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=6.7e-06 Score=66.15 Aligned_cols=83 Identities=11% Similarity=-0.071 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
....+..+..++.+.|++++|+..++++++.++. +...|..++.++...|++++|+..|+++++.. +.+..+...+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567788899999999999999999999998776 88899999999999999999999999999975 556666666665
Q ss_pred HHHhc
Q 037409 548 GFVQN 552 (603)
Q Consensus 548 ~~~~~ 552 (603)
+..+.
T Consensus 154 ~~~~l 158 (169)
T d1ihga1 154 VKQKI 158 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.18 E-value=2.7e-06 Score=66.21 Aligned_cols=70 Identities=9% Similarity=-0.057 Sum_probs=34.7
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC----------ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG----------RLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
.+.+.+++|...|+...+.. |.++.++..+..++...+ .+++|+..|+++++.+|. +..+|..++.+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence 34445566666666665554 455555555555554332 234444444444444333 444444444444
Q ss_pred HH
Q 037409 515 CK 516 (603)
Q Consensus 515 ~~ 516 (603)
..
T Consensus 86 ~~ 87 (145)
T d1zu2a1 86 TS 87 (145)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=0.0023 Score=56.58 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 302 (603)
|..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 333344455556666666666666654432 455566666666666666665443 14556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 303 YNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
.+.+......+ .+.......++.....++..|...|.++....+++...... ..+...++.++..|++.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 66665554332 11122223344444556666666666666666666654331 33444556666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.08 E-value=1.3e-05 Score=62.25 Aligned_cols=111 Identities=5% Similarity=-0.045 Sum_probs=67.5
Q ss_pred HHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 479 LCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----------EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
|-+.+.+++|...|+...+.+|. +..++..++.++.. .+.+++|+..|+++++.+ |.+..+|..++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 34455677777777777776655 66666666666653 344577777777777764 5566677777777
Q ss_pred HHhcCC-----------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHH
Q 037409 549 FVQNNK-----------KSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRE 593 (603)
Q Consensus 549 ~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 593 (603)
|...|+ +++|.+.|+++++..+. +......+.......+.+.+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~--~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD--NTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHTHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 665442 46677777777765543 44444445444433344444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.07 E-value=2.6e-06 Score=73.67 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=41.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG 111 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 111 (603)
..|++++|+..|++.++.+|. +...+..++..|...|++++|...|+.+.+..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 467888888888888877765 77778888888888888888888888877663
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.06 E-value=9.4e-05 Score=59.40 Aligned_cols=131 Identities=10% Similarity=0.013 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG 518 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 518 (603)
.........|++++|.+.|.+.+...-. +.. ......+-+...-..+... ....+..++.++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG-~~l---------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRG-PVL---------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCS-STT---------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc-ccc---------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 3445667788899998888888864211 100 0001111111111112211 2346778888899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCHHHHHHHHHHH
Q 037409 519 QMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA-----AEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 519 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 585 (603)
++++|+..++++++.. +-+...|..++.+|.+.|+.++|++.|+++. +.|+. |.+++-...-.++
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~-P~~~l~~l~~~il 151 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID-PGPTLRALNERIL 151 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC-CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHH
Confidence 9999999999999875 6688889999999999999999999999875 35888 7776644444433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.03 E-value=4.8e-06 Score=71.94 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=86.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
..+.|++++|+..+++.++.. |.+...+..++..++..|++++|...++...+..+. +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence 346788999999998888876 778888899999999999999999999988886554 455666666555544444333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 524 NDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..-.......+-+++...+...+..+...|+.++|.+.++++.+..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 322222111121222334455566788889999999999888876554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0043 Score=54.73 Aligned_cols=135 Identities=12% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 037409 114 PDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLI 193 (603)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
|+..-...++..|.+.|.++.|..++..+ .-|..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 45555555666666777777776666532 234455566666666666666655432 445666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
..+.+......|. +.... ...+......++..|...|.+++...+++..... -..+...++.++..|++.
T Consensus 77 ~~l~~~~e~~la~-----i~~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQ-----MCGLH---IVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHH-----HTTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHH-----HHHHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 6666555443321 11110 1223333445566666666666666666655432 123444555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.95 E-value=0.0002 Score=57.35 Aligned_cols=124 Identities=10% Similarity=-0.043 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC
Q 037409 404 TLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG 483 (603)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 483 (603)
.........|++++|...|.+...... .... ........+...-..+. +.....+..++.++.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence 344567889999999999999886421 1100 00011111111111121 123457788999999999
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 037409 484 RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA-----KNCVPSEVTF 542 (603)
Q Consensus 484 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 542 (603)
++++|...++++++.++. +...|..++.++...|+.++|++.|+++.+ .|+.|+..+-
T Consensus 82 ~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999999998777 899999999999999999999999999854 5888987663
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.78 E-value=5.1e-05 Score=59.78 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=55.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNC-VP----------SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK-----LVVS- 573 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~- 573 (603)
+..+...|++++|+..|++.++... .| ...+|..++.+|...|++++|...+++.++.. ..+.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445566777777777777665310 01 12456677777777777777777777766421 1100
Q ss_pred ---CHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 574 ---DLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 574 ---~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
....+..++.+|...|++++|++.|++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12245667777888888888887777643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.00011 Score=51.73 Aligned_cols=75 Identities=8% Similarity=-0.046 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKN-----CVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSS 579 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 579 (603)
.+-.++..+.+.|++++|+..|+++++.. ..++ ..++..++.++.+.|++++|+..++++++..|. ++.+..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~--~~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE--HQRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC--CHHHHH
Confidence 34456777777777777777777776531 1112 456777888888888888888888888776654 555555
Q ss_pred HHH
Q 037409 580 KVV 582 (603)
Q Consensus 580 ~l~ 582 (603)
.+.
T Consensus 85 Nl~ 87 (95)
T d1tjca_ 85 NLK 87 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.58 E-value=0.00061 Score=53.30 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=63.0
Q ss_pred HHHHHhCCChhHHHHHHHHHhhCCCC-C----------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC-
Q 037409 476 INGLCKMGRLKTACKLFHRLQHKGPI-P----------DVVTCSTMIHWLCKEGQMDKANDLLLDMEAK-----NCVPS- 538 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~- 538 (603)
+..+.+.|++++|+..|++.++..+. | ...+|+.++.+|...|++++|+..+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777776653211 1 1346777888888888888888888887653 11122
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 539 ----EVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 539 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
..++..++.+|...|++++|...|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22467788899999999999999998875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00063 Score=47.71 Aligned_cols=75 Identities=13% Similarity=-0.028 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCC-----CCCC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKG-----PIPD-VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFC 543 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 543 (603)
..+-.++..+.+.|++++|...|++..+.. ..++ ..+++.++.++.+.|++++|+..++++++.. |.+..++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 334455566666666666666666555421 1111 3456666777777777777777777776654 33444444
Q ss_pred HH
Q 037409 544 TL 545 (603)
Q Consensus 544 ~l 545 (603)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.05 E-value=0.012 Score=43.94 Aligned_cols=111 Identities=9% Similarity=-0.005 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----cCChhHHH
Q 037409 449 FVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----EGQMDKAN 524 (603)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 524 (603)
|+++|.++|++..+.+ ++.....|.. ....+.++|...+++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4455555555555444 1122222221 22345566666666666543 34444455555543 34566777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 037409 525 DLLLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 570 (603)
++|++..+.| ++.....|+..|.. ..+.++|.++++++.+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777776654 34445555555554 3466777777777766553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.98 E-value=0.01 Score=44.40 Aligned_cols=110 Identities=9% Similarity=-0.027 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGAF 136 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 136 (603)
|+++|+.+|+++.+.+. ...+..+.. ....+.++|+..+++..+.| ++.....+...|.. ..++++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56788888888776542 233333332 23456677777777776655 44555555555543 33455666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhcC
Q 037409 137 VVLGRILRSCFTPNTVTFNFLINGLCA----EGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 181 (603)
.+|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666665554 33444444444443 235555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.64 E-value=0.059 Score=38.13 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
...++..+..+..+|+-+.-.+++..+.+.+ .+++..+..++.+|-+.|...++.+++.++.+.|..
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3445666778888999999999999988866 889999999999999999999999999999998875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.029 Score=40.29 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=52.5
Q ss_pred CCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 500 PIPDVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVPSE-VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 500 ~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..|...+--.+++++.++. +.++++.+++++.+.+ +.+. ..+..|+-+|.+.|++++|.+.++++++..+.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3456667777788887664 4467888888888754 3343 57778888888889999998888888886654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.62 Score=42.82 Aligned_cols=348 Identities=10% Similarity=0.012 Sum_probs=182.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 193 INGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
+..+.+.+++...+..+. . .+.+...-.....+....|+.++|...+..+-..|.. .+
T Consensus 79 l~~L~~~~~w~~~~~~~~----~----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p------------- 136 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSP----E----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP------------- 136 (450)
T ss_dssp HHHHHHTTCHHHHHHHCC----S----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC-------------
T ss_pred HHHHHhccCHHHHHHhcc----C----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc-------------
Confidence 445556666554332221 1 2334444445566666777777777666665544321 11
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 273 DDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELF 352 (603)
Q Consensus 273 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 352 (603)
+.+..+|..+...| ..+...+-.-+......|++..|..+...+-.. ........+.......... .
T Consensus 137 ---~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~---~-- 203 (450)
T d1qsaa1 137 ---NACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVL---T-- 203 (450)
T ss_dssp ---THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHH---H--
T ss_pred ---hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHH---H--
Confidence 22233344444443 234444444455555667777777765543211 2223333333332222221 1
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHh
Q 037409 353 VSMVSKGCRHDVYSYNILINANCK--DQKVEDAVCLYREMLSERIRPSVITYNTLL----SGLFQVGNLGDALKLIDKMQ 426 (603)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~ 426 (603)
..... ..+......+..++.+ ..+.+.+..++......... +...+...- ......+..+.+...+....
T Consensus 204 -~~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~ 279 (450)
T d1qsaa1 204 -FARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (450)
T ss_dssp -HHHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred -HHhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc
Confidence 11111 1222222223333322 35778888888776654322 222222222 22234566777877777766
Q ss_pred hCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhH
Q 037409 427 LNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVT 506 (603)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 506 (603)
..+. +.......+......+++..+...++.+... ......-.-.++.++...|+.+.|...|..+... ++ -
T Consensus 280 ~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--f 351 (450)
T d1qsaa1 280 MRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--F 351 (450)
T ss_dssp HTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--H
T ss_pred cccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--h
Confidence 5543 3333344444556678888888887766432 1223455567888888899999999999888752 33 3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNC--VPSEV----TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSK 580 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 580 (603)
|..|... +.|..-. +..... .+... .-...+..+...|+...|...+..+... .++.-...
T Consensus 352 YG~LAa~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~----~~~~~~~~ 418 (450)
T d1qsaa1 352 YPMVAAQ--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS----KSKTEQAQ 418 (450)
T ss_dssp HHHHHHH--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CCHHHHHH
T ss_pred HHHHHHH--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC----CCHHHHHH
Confidence 3333222 1221100 000000 01110 0123356678899999999999988753 24556667
Q ss_pred HHHHHHcCCcHHHHHHHHHh
Q 037409 581 VVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 581 l~~~~~~~g~~~eA~~~~~~ 600 (603)
++....+.|.++.|+....+
T Consensus 419 la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHH
Confidence 88999999999999987655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.76 E-value=0.19 Score=35.52 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
...+..+..+|.-+.-.++++.+.+.+ ++++.....+..+|.+.|+..++-+++.++-+.|.
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444455555555555555544433 44555555555555555555555555555554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.032 Score=40.03 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNKK---SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++..+-..+++++.++.+. ++++.+++++.+.++. ...+.+..++-+|.+.|++++|+++++++|
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46778888899999887554 7899999999876543 234788899999999999999999999876
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=1.8 Score=39.62 Aligned_cols=170 Identities=8% Similarity=-0.013 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037409 342 VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKL 421 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 421 (603)
.+..+.+...+......+ .+.......+......+++..+...++.+... ........--+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 444555655555554442 12223333344445566777777766665432 111233334555666777777777777
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCh----HHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 422 IDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCE--LRI----ETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
|..+... ++ |...+.+ .+.|..-. +.....+ +.. ..-..-+..+...|....|...|..+
T Consensus 342 ~~~~a~~---~~---fYG~LAa-~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 342 LHQLMQQ---RG---FYPMVAA-QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHTS---CS---HHHHHHH-HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcC---CC---hHHHHHH-HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 7766531 22 2222211 12221100 0000000 000 00112345566788888888888877
Q ss_pred hhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 496 QHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 496 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
... .+......++....+.|.++.|+....+..
T Consensus 408 ~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 408 VKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 653 245556677777788888888887766654
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.08 E-value=4.3 Score=29.71 Aligned_cols=141 Identities=15% Similarity=0.022 Sum_probs=86.4
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 037409 446 KNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAND 525 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 525 (603)
..++.+-|.++ ..+.|.+-....|..-.+-+...|++++|.++.-...+.-.+ +..|.+.+-.+=...|...--+.
T Consensus 11 ~l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~giLR-t~~Ti~rFk~~~~~pGq~spLL~ 86 (157)
T d1bpoa1 11 VLQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILR-TPDTIRRFQSVPAQPGQTSPLLQ 86 (157)
T ss_dssp TTCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSC-SHHHHHHHTTSCCCTTSCCHHHH
T ss_pred ccCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCccccc-CHHHHHHHHcCCCCCCCCCHHHH
Confidence 34566666544 555676666677777777788888888888877665543233 66666555444344566677778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 526 LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
+|..+++.| ..+..-=.-+++.-...|+.+-..+++++ ..+. .+.+ +++ +.+.-+..-|..+|.+
T Consensus 87 YF~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~Wl~e---~KL~-~SEe----LGD-lv~~~d~~lAl~IY~k 151 (157)
T d1bpoa1 87 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLE-CSEE----LGD-LVKSVDPTLALSVYLR 151 (157)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSC-CCHH----HHH-HHHHHCSHHHHHHHHH
T ss_pred HHHHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHHHHc---CCcc-CcHH----HHH-HHHHcCHHHHHHHHHH
Confidence 888888776 55655445667777777877766666443 3343 2322 344 2233355667777654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.33 E-value=3.2 Score=27.57 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
+.-+..+-++.+...+..|++......+.+|.+.+++..|.++++.+...- .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 344555556666666667777777777777777777777777777666421 22344454443
|